Martin Krzywinski / Canada's Michael Smith Genome Sciences Centre / mkweb.bcgsc.ca Martin Krzywinski / Canada's Michael Smith Genome Sciences Centre / mkweb.bcgsc.ca - contact me Martin Krzywinski / Canada's Michael Smith Genome Sciences Centre / mkweb.bcgsc.ca on Twitter Martin Krzywinski / Canada's Michael Smith Genome Sciences Centre / mkweb.bcgsc.ca - Lumondo Photography Martin Krzywinski / Canada's Michael Smith Genome Sciences Centre / mkweb.bcgsc.ca - Pi Art Martin Krzywinski / Canada's Michael Smith Genome Sciences Centre / mkweb.bcgsc.ca - Hilbertonians - Creatures on the Hilbert CurveMartin Krzywinski / Canada's Michael Smith Genome Sciences Centre / mkweb.bcgsc.ca - Pi Day 2020 - Piku
Where am I supposed to go? Where was I supposed to know?Violet Indianaget lost in questionsmore quotes

quotes: beautiful


Martin Krzywinski / Canada's Michael Smith Genome Sciences Centre / mkweb.bcgsc.ca
2020 `\pi` day art and the piku


art + literature

daily quotation server archives

In the late 90’s I started (a good decade for starts) a daily quotation server project at www.quoteserver.ca. The domain is now defunct—some pages are partially viewable at the Way Back Machine.

Below is the list of quotes I had collected by the end of the life of the project. Most are about love—duh—and a few are jolly jests from funny trenches. You know, that place where mustard gas makes your eyes water.

The quotes weren’t scraped from quote archives—each is meaningful and hand-picked.

the quote archive

And now for full list of 1,700+ other things worth reading. Such as everything Dorothy Parker has written and ... yes, even the Pinky and Brain quotes, which are a special kind of special.

Quote collections about love, heart, desire, life, death, god, mind, science.

Feeling lucky? Read 10 random quotes. Well, will you, punk?

Quotes about mind

21
Shall any gazer see with mortal eyes,
Or any seeker know by mortal mind?
Veil after veil will lift — but there must be
Veil upon veil behind.
Sir Edwin Arnold
The Light of Asia, VIII
36
The mind has a thousand eyes,
And the heart but one;
Yet the light of a whole life dies,
When love is done.
Francis Bourdillon
Light
166
I don’t mind sleeping on an empty stomach provided it isn’t my own.
Philip J. Simborg
286
All life is a struggle in the dark ... This dread and
darkness of the mind cannot be dispelled by the
sunbeams, the shining shafts of day, but only by
an understanding of the outward form and inner
workings of nature. And now to business,
I will explain ...
Lucretius
On the Nature of the Universe
345
Serious error.
All shortcuts have disappeared.
Screen. Mind. Both are blank.
A Haiku computer error message.
390
Friendship is almost always the union of a part of one mind with a part of another; people are friends in spots.
George Santayana
414
And, while with silent, lifting mind I’ve trod
The high untrespassed sanctity of space,
Put out my hand, and touched the face of God.
John Gillespie Magee, Jr.
437
A mind is like a parachute; it only works when it is open.
Sir James Dewar
444
Tact is the ability to tell a man he has an open mind when he has a hole in his head.
450
Get your mind out of the gutter—it’s blocking my view.
488
In the beginner’s mind there are many possibilities, but in the expert’s mind there are a few.
Shunryu Suzuki
612
There is a lady sweet and kind,
Was never a face so pleased my mind;
I did but see her passing by,
And yet I love her till I die.
617
With women the heart argues, not the mind.
Matthew Arnold
Merope, 1.341
674
In every cry of every Man,
In every Infants cry of fear,
In every voice: in every ban,
The mind-forg’d manacles I hear.
William Blake
London
696
Measure your mind’s height by the shade it casts.
Robert Browning
Paracelsus, pt. iii, i.363
708
I do not mind lying but I hate inaccuracy.
Samuel Butler
Note Books
743
That out of sight is out of mind
Is true of most we leave behind.
Arthur Hugh Clough
Songs in Absence, That Out of Sight
866
Beauty in things exists in the mind which contemplates them.
David Hume
Of Tragedy
871
Some experience of popular lecturing had convinced me that the necessity of making things plain to uninstructed people was one of the very best means of clearing up the obscure conrners in one’s own mind.
T.H. Huxley
Man’s Place in Nature
965
A fanatic is one who can’t change his mind and won’t change the subject.
Winston Churchill
983
Dans les champs de l’observation le hasard ne favorise que les esprits prepares.
[Where observation is concerned, chance favours only the prepared mind.]
Louis Pasteur
1137
Years steal
Fire from the mind as vigor from the limb,
And life’s enchanted cup but sparkles near the brim.
Lord Byron
Childe Harold’s Pilgrimage
1182
This have I known always: Love is no more
Than the wide blossom which the wind assails,
Than the great tide that treads the shifting shore,
Strewing fresh wreckage gathered in the gales:
Pity me that the heart is slow to learn
What the swift mind beholds at every turn.
Edna St. Vincent Millay
Sonnets, xxix
1195
I know a man that’s a braver man
And twenty men as kind,
And what are you, that you should be
The one man in my mind?
Edna St. Vincent Millay
The Philosopher
1317
Her mind lives tidily, apart
From cold and noise and pain,
And bolts the door against her heart,
Out wailing in the rain.
Dorothy Parker
Interior
1508
Nothing contributes so much to tranquilizing the mind as a steady purpose—a point on which the soul may fix its intellectual eye.
Mary Wollstonecraft Shelley
1547
So the old tunes float in my mind,
And go from me leaving no trace behind,
Like fragrance borne on the hush of the wind.
but in the instant the airs remain
I know the laughter and the pain
Of times that will not come again.
Sara Teasdale
Old Tunes
1584
Remember me and beare in mind
A truthful friend is hard to find
The path of sorrow and that alone
Leads to a place where sorrow is unknown.
Anna Bowman
Autograph Albums and Bible of Ella Beaver Calhoun
1634
Something made of nothing, tasting very sweet,
A most delicious compound, with ingredients complete;
But if, as on occasion, the heart and mind are sour,
It has no great significance, and loses half its power.
Mary. E. Buell
The Kiss

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news + thoughts

The Outbreak Poems

Tue 24-03-2020

I'm writing poetry daily to put my feelings into words more often during the COVID-19 outbreak.

Problems greet
us
in the morning.
Small voices
now
clear in silence.
Sound of trees
you
have always been
there.
Directions
are
all of forward
kind.

Read the poems and learn what a piku is.

Deadly Genomes: Genome Structure and Size of Harmful Bacteria and Viruses

Tue 17-03-2020

A poster full of epidemiological worry and statistics. Now updated with the genome of SARS-CoV-2 and COVID-19 case statistics as of 3 March 2020.

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
Deadly Genomes: Genome Structure and Size of Harmful Bacteria and Viruses (zoom)

Bacterial and viral genomes of various diseases are drawn as paths with color encoding local GC content and curvature encoding local repeat content. Position of the genome encodes prevalence and mortality rate.

The deadly genomes collection has been updated with a posters of the genomes of SARS-CoV-2, the novel coronavirus that causes COVID-19.

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
Genomes of 56 SARS-CoV-2 coronaviruses that causes COVID-19.
Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
Ball of 56 SARS-CoV-2 coronaviruses that causes COVID-19.
Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
The first SARS-CoV-2 genome (MT019529) to be sequenced appears first on the poster.

Using Circos in Galaxy Australia Workshop

Wed 04-03-2020

A workshop in using the Circos Galaxy wrapper by Hiltemann and Rasche. Event organized by Australian Biocommons.

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
Using Circos in Galaxy Australia workshop. (zoom)

Download workshop slides.

Galaxy wrapper training materials, Saskia Hiltemann, Helena Rasche, 2020 Visualisation with Circos (Galaxy Training Materials).

Essence of Data Visualization in Bioinformatics Webinar

Thu 20-02-2020

My webinar on fundamental concepts in data visualization and visual communication of scientific data and concepts. Event organized by Australian Biocommons.

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
Essence of Data Visualization in Bioinformatics webinar. (zoom)

Download webinar slides.

Markov models — training and evaluation of hidden Markov models

Thu 20-02-2020

With one eye you are looking at the outside world, while with the other you are looking within yourself.
—Amedeo Modigliani

Following up with our Markov Chain column and Hidden Markov model column, this month we look at how Markov models are trained using the example of biased coin.

We introduce the concepts of forward and backward probabilities and explicitly show how they are calculated in the training process using the Baum-Welch algorithm. We also discuss the value of ensemble models and the use of pseudocounts for cases where rare observations are expected but not necessarily seen.

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
Nature Methods Points of Significance column: Markov models — training and evaluation of hidden Markov models. (read)

Grewal, J., Krzywinski, M. & Altman, N. (2019) Points of significance: Markov models — training and evaluation of hidden Markov models. Nature Methods 17:121–122.

Background reading

Altman, N. & Krzywinski, M. (2019) Points of significance: Hidden Markov models. Nature Methods 16:795–796.

Altman, N. & Krzywinski, M. (2019) Points of significance: Markov Chains. Nature Methods 16:663–664.