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In your hiding, you're alone. Kept your treasures with my bones.Coeur de Piratecrawl somewhere bettermore quotes

english: exciting

EMBO Practical Course: Bioinformatics and Genome Analysis, 5–17 June 2017.

art + literature

daily quotation server archives

In the late 90’s I started (a good decade for starts) a daily quotation server project at The domain is now defunct—some pages are partially viewable at the Way Back Machine.

Below is the list of quotes I had collected by the end of the life of the project. Most are about love—duh—and a few are jolly jests from funny trenches. You know, that place where mustard gas makes your eyes water.

The quotes weren’t scraped from quote archives—each is meaningful and hand-picked.

the quote archive

And now for full list of 1,600 other things worth reading. Such as everything Dorothy Parker has written and ... yes, even the Pinky and Brain quotes, which are a special kind of special.

Quote collections about love, heart, desire, life, death, god, mind, science.

Feeling lucky? Read 10 random quotes. Well, will you, punk?

Quotes about mind

Shall any gazer see with mortal eyes,
Or any seeker know by mortal mind?
Veil after veil will lift — but there must be
Veil upon veil behind.
Sir Edwin Arnold
The Light of Asia, VIII
The mind has a thousand eyes,
And the heart but one;
Yet the light of a whole life dies,
When love is done.
Francis Bourdillon
I don’t mind sleeping on an empty stomach provided it isn’t my own.
Philip J. Simborg
All life is a struggle in the dark ... This dread and
darkness of the mind cannot be dispelled by the
sunbeams, the shining shafts of day, but only by
an understanding of the outward form and inner
workings of nature. And now to business,
I will explain ...
On the Nature of the Universe
Serious error.
All shortcuts have disappeared.
Screen. Mind. Both are blank.
A Haiku computer error message.
Friendship is almost always the union of a part of one mind with a part of another; people are friends in spots.
George Santayana
And, while with silent, lifting mind I’ve trod
The high untrespassed sanctity of space,
Put out my hand, and touched the face of God.
John Gillespie Magee, Jr.
A mind is like a parachute; it only works when it is open.
Sir James Dewar
Tact is the ability to tell a man he has an open mind when he has a hole in his head.
Get your mind out of the gutter—it’s blocking my view.
In the beginner’s mind there are many possibilities, but in the expert’s mind there are a few.
Shunryu Suzuki
There is a lady sweet and kind,
Was never a face so pleased my mind;
I did but see her passing by,
And yet I love her till I die.
With women the heart argues, not the mind.
Matthew Arnold
Merope, 1.341
In every cry of every Man,
In every Infants cry of fear,
In every voice: in every ban,
The mind-forg’d manacles I hear.
William Blake
Measure your mind’s height by the shade it casts.
Robert Browning
Paracelsus, pt. iii, i.363
I do not mind lying but I hate inaccuracy.
Samuel Butler
Note Books
That out of sight is out of mind
Is true of most we leave behind.
Arthur Hugh Clough
Songs in Absence, That Out of Sight
Beauty in things exists in the mind which contemplates them.
David Hume
Of Tragedy
Some experience of popular lecturing had convinced me that the necessity of making things plain to uninstructed people was one of the very best means of clearing up the obscure conrners in one’s own mind.
T.H. Huxley
Man’s Place in Nature
A fanatic is one who can’t change his mind and won’t change the subject.
Winston Churchill
Dans les champs de l’observation le hasard ne favorise que les esprits prepares.
[Where observation is concerned, chance favours only the prepared mind.]
Louis Pasteur
Years steal
Fire from the mind as vigor from the limb,
And life’s enchanted cup but sparkles near the brim.
Lord Byron
Childe Harold’s Pilgrimage
This have I known always: Love is no more
Than the wide blossom which the wind assails,
Than the great tide that treads the shifting shore,
Strewing fresh wreckage gathered in the gales:
Pity me that the heart is slow to learn
What the swift mind beholds at every turn.
Edna St. Vincent Millay
Sonnets, xxix
I know a man that’s a braver man
And twenty men as kind,
And what are you, that you should be
The one man in my mind?
Edna St. Vincent Millay
The Philosopher
Her mind lives tidily, apart
From cold and noise and pain,
And bolts the door against her heart,
Out wailing in the rain.
Dorothy Parker
Nothing contributes so much to tranquilizing the mind as a steady purpose—a point on which the soul may fix its intellectual eye.
Mary Wollstonecraft Shelley
So the old tunes float in my mind,
And go from me leaving no trace behind,
Like fragrance borne on the hush of the wind.
but in the instant the airs remain
I know the laughter and the pain
Of times that will not come again.
Sara Teasdale
Old Tunes
Remember me and beare in mind
A truthful friend is hard to find
The path of sorrow and that alone
Leads to a place where sorrow is unknown.
Anna Bowman
Autograph Albums and Bible of Ella Beaver Calhoun
Something made of nothing, tasting very sweet,
A most delicious compound, with ingredients complete;
But if, as on occasion, the heart and mind are sour,
It has no great significance, and loses half its power.
Mary. E. Buell
The Kiss

news + thoughts

Personal Oncogenomics Program 5 Year Anniversary Art

Wed 26-07-2017

The artwork was created in collaboration with my colleagues at the Genome Sciences Center to celebrate the 5 year anniversary of the Personalized Oncogenomics Program (POG).

Martin Krzywinski @MKrzywinski
5 Years of Personalized Oncogenomics Program at Canada's Michael Smith Genome Sciences Centre. The poster shows 545 cancer cases. (left) Cases ordered chronologically by case number. (right) Cases grouped by diagnosis (tissue type) and then by similarity within group.

The Personal Oncogenomics Program (POG) is a collaborative research study including many BC Cancer Agency oncologists, pathologists and other clinicians along with Canada's Michael Smith Genome Sciences Centre with support from BC Cancer Foundation.

The aim of the program is to sequence, analyze and compare the genome of each patient's cancer—the entire DNA and RNA inside tumor cells— in order to understand what is enabling it to identify less toxic and more effective treatment options.

Principal component analysis

Thu 06-07-2017
PCA helps you interpret your data, but it will not always find the important patterns.

Principal component analysis (PCA) simplifies the complexity in high-dimensional data by reducing its number of dimensions.

Martin Krzywinski @MKrzywinski
Nature Methods Points of Significance column: Principal component analysis. (read)

To retain trend and patterns in the reduced representation, PCA finds linear combinations of canonical dimensions that maximize the variance of the projection of the data.

PCA is helpful in visualizing high-dimensional data and scatter plots based on 2-dimensional PCA can reveal clusters.

Altman, N. & Krzywinski, M. (2017) Points of Significance: Principal component analysis. Nature Methods 14:641–642.

Background reading

Altman, N. & Krzywinski, M. (2017) Points of Significance: Clustering. Nature Methods 14:545–546.

...more about the Points of Significance column

`k` index: a weightlighting and Crossfit performance measure

Wed 07-06-2017

Similar to the `h` index in publishing, the `k` index is a measure of fitness performance.

To achieve a `k` index for a movement you must perform `k` unbroken reps at `k`% 1RM.

The expected value for the `k` index is probably somewhere in the range of `k = 26` to `k=35`, with higher values progressively more difficult to achieve.

In my `k` index introduction article I provide detailed explanation, rep scheme table and WOD example.

Dark Matter of the English Language—the unwords

Wed 07-06-2017

I've applied the char-rnn recurrent neural network to generate new words, names of drugs and countries.

The effect is intriguing and facetious—yes, those are real words.

But these are not: necronology, abobionalism, gabdologist, and nonerify.

These places only exist in the mind: Conchar and Pobacia, Hzuuland, New Kain, Rabibus and Megee Islands, Sentip and Sitina, Sinistan and Urzenia.

And these are the imaginary afflictions of the imagination: ictophobia, myconomascophobia, and talmatomania.

And these, of the body: ophalosis, icabulosis, mediatopathy and bellotalgia.

Want to name your baby? Or someone else's baby? Try Ginavietta Xilly Anganelel or Ferandulde Hommanloco Kictortick.

When taking new therapeutics, never mix salivac and labromine. And don't forget that abadarone is best taken on an empty stomach.

And nothing increases the chance of getting that grant funded than proposing the study of a new –ome! We really need someone to looking into the femome and manome.

Dark Matter of the Genome—the nullomers

Wed 31-05-2017

An exploration of things that are missing in the human genome. The nullomers.

Julia Herold, Stefan Kurtz and Robert Giegerich. Efficient computation of absent words in genomic sequences. BMC Bioinformatics (2008) 9:167