Martin Krzywinski / Genome Sciences Center / mkweb.bcgsc.ca Martin Krzywinski / Genome Sciences Center / mkweb.bcgsc.ca - contact me Martin Krzywinski / Genome Sciences Center / mkweb.bcgsc.ca on Twitter Martin Krzywinski / Genome Sciences Center / mkweb.bcgsc.ca - Lumondo Photography Martin Krzywinski / Genome Sciences Center / mkweb.bcgsc.ca - Pi Art Martin Krzywinski / Genome Sciences Center / mkweb.bcgsc.ca - Hilbertonians - Creatures on the Hilbert Curve
listen; there's a hell of a good universe next door: let's go.e.e. cummingsgo theremore quotes

In Silico Flurries: Computing a world of snow. Scientific American. 23 December 2017

design + visualization

VIZBI 2012

Visualization Principles Tutorial


This tutorial took place on Monday Mar 5th 2012 at VIZBI 2012 in Heidelberg Germany.

Introduction

Jessie Kennedy · We will present fundamental principles of graphic design and visual communication that will help you create more effective interactive and print visualizations. You will learn how the purposeful use of salience, color, consistency and layout can help communicate large data sets and complex ideas with greater immediacy and clarity.

Cydney Nielsen · We will illustrate how these principles were implemented in ABySS-Explorer to visualize genome assemblies, an example to show you ways to apply design ideas to your own project.

Martin Krzywinski · At the end of the tutorial, you will apply what you have learned in an interactive group session in which you will design a figure illustrating a biological process.

Agenda

Download agenda + participant list

9:30 – 10:15 45 min Jessie Kennedy
Principles
10:15 – 10:25 10 min break
10:25 – 11:10 45 min Cydney Nielsen
Design Process
11:10 – 11:20 10 min form teams + select figure to critique
11:20 – 11:30 10 min break
11:30 – 12:00 30 min Martin Krzywinski
Practical — Breakout session
download papers
12:00 – 13:00 60 min team presentations
Interactive
suggested solutions

It is not necessary to read the paper from which your figure was selected. I have included the papers only if you are interested in learning about the figure's context.

Visualization and Design Resources

Effect of resolution on sequence visualization

Principles of effective color selection

Designing effective visualizations in the biological sciences (PSA Genomics Workshop, Seattle, 12 July 2011)

Circos and Hive Plots: Challenging visualization paradigms in genomics and network analysis (PSA Genomics Workshop, Seattle, 12 July 2011)

Designing effective visualizations in the biological sciences (Genome Sciences Center bioinformatics seminar, 26 August 2011)

Drawing Data: Creaing information-rich, informative and appealing figures for publication and presentation (BCCA workshop, 8 Jun 2011)

Behind a great figure is a design principle (BCB Spring Seminar, Iowa State, 27 Feb 2012)

Visualizing Quantitative Information (Genome Sciences Center bioinformatics seminar)

Blast from the past

Linux and Genomics: Two Revolutions (USENIX 2004)

Visualization Principles VIZBI Book Chapter

Look for my chapter on visualization principles in the upcoming Visualizing Biological Data — a Practical Guide. This book is being written by VIZBI 2011 participants and edited by Sean O'Donoghue and Jim Procter.

VIEW ALL

news + thoughts

Molecular Case Studies Cover

Fri 06-07-2018

The theme of the April issue of Molecular Case Studies is precision oncogenomics. We have three papers in the issue based on work done in our Personalized Oncogenomics Program (POG).

The covers of Molecular Case Studies typically show microscopy images, with some shown in a more abstract fashion. There's also the occasional Circos plot.

I've previously taken a more fine-art approach to cover design, such for those of Nature, Genome Research and Trends in Genetics. I've used microscopy images to create a cover for PNAS—the one that made biology look like astrophysics—and thought that this is kind of material I'd start with for the MCS cover.

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
Cover design for Apr 2018 issue of Molecular Case Studies. (details)

Happy 2018 `\tau` Day—Art for everyone

Wed 27-06-2018
Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
You know what day it is. (details)

Universe Superclusters and Voids

Mon 25-06-2018

A map of the nearby superclusters and voids in the Unvierse.

By "nearby" I mean within 6,000 million light-years.

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
The Universe — Superclustesr and Voids. The two supergalactic hemispheres showing Abell clusters, superclusters and voids within a distance of 6,000 million light-years from the Milky Way. (details)

Datavis for your feet—the 178.75 lb socks

Sat 23-06-2018

In the past, I've been tangentially involved in fashion design. I've also been more directly involved in fashion photography.

It was now time to design my first ... pair of socks.

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
Some datavis for your feet: the 178.75 lb socks. (get some)

In collaboration with Flux Socks, the design features the colors and relative thicknesses of Rogue olympic weightlifting plates. The first four plates in the stack are the 55, 45, 35, and 25 competition plates. The top 4 plates are the 10, 5, 2.5 and 1.25 lb change plates.

The perceived weight of each sock is 178.75 lb and 357.5 lb for the pair.

The actual weight is much less.