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Safe, fallen down this way, I want to be just what I am.Cocteau Twinssafe at lastmore quotes

See you at Shonan Meeting 167 — Formalizing Biomedical Visualization


language + fiction

Dark Matter of the English Language—the unwords

Words are easy, like the wind;
Faithful friends are hard to find.
—William Shakespeare

unwords

This is the biggest list—887,716 English unwords, generated from a list of 479,000 list of English words.

Medically compelling words, defined by some interesting suffixes (e.g. phobia), are presented in the undiseases section.

The list of unwords is filtered to exclude any hyphenation and apostrophes. I've made no attempt to stem the words—for example, to remove what appear to be plural forms.

—3—
abh
baf
cah
daf
ebz
fal
gaa
hea
ibb
jaa
kaa
laa
maq
nai
oaa
paa
qqu
raz
sbz
tah
uea
vae
wel
xni
yab
zaa
—4—
abae
bace
caak
dabn
eacc
faha
gaag
hadr
ibal
jabo
kaah
laep
maal
naan
oaah
paan
qeit
raef
sabm
taak
ubed
vace
wanr
xake
yada
zaac
—5—
ababo
babne
caang
dabna
eable
fadus
gaaba
habwe
iaced
jaacm
kaaab
ladde
maaco
naars
oaads
paabs
qeisa
radlo
sabil
tabal
udsel
vaard
wance
xibne
yebon
zaach
—6—
aachan
babold
caabah
dabnar
eables
facont
gaaada
habway
iacect
jaaday
kaadey
laclic
maakin
nabens
oaagee
paabay
quaben
raldos
sabane
taaque
udnygs
vabara
wamfly
xennis
yeamyl
zaaced
—7—
aamreid
bacadil
caamale
daajarg
eabemic
facomas
gaabags
habwest
iacects
jaabate
kabadis
laclics
maakite
naaquan
oaalake
paaband
qeitage
raemony
sabanal
tabater
ubecide
vabitat
walcama
xeaiate
yazoris
zaacure
—8—
aachtony
bacacree
caamahoo
dabnasas
eabidion
facomate
gaabacte
habwoofs
iaccuate
jaabarly
kabalion
lacloses
maaglive
nabaneer
oaaldiza
paabands
qeinator
ramaness
sabaless
tabakton
uangorin
vabipans
wameless
xeywords
ydneress
zaachner
—9—
abackiest
bacaiting
caambaria
dabnaring
eablishes
facomania
gaaadedia
habwuiter
iacectium
jaadneway
kaahajout
laclidian
maacchial
nabaneest
oabarfort
paachting
qeinatory
raemoning
sabalaryl
taabotzle
udnyglyph
vabippary
wandwares
xendomate
yeesonian
zaachnick
—10—
aadophanic
bacaitings
caamahooed
daakarillo
eabialysis
facolatine
gaabustail
hacchotest
iabiaceous
jaabarness
kaagnation
lacloparia
maagillism
naantalous
oaadrooter
paacrasses
qturegrasm
raemonetts
sabalidase
tabiricate
uaragrable
vabipagean
wandwatark
xickinfert
yebonesses
zaacricker
—11—
aadophacone
bachplasted
caamahooing
dabnationer
eabidiology
facoscophic
gaablerment
hacchotized
ibbicarized
jaacoughter
kabstomment
lacloparian
maagilineal
nabionmaker
oabatrophic
paalligeret
quacidioned
raemonetted
sabalidated
tabisteculi
ubedability
vabipparies
wandwauning
yennishness
zaadishness

—12—
aadophaliums
bachplasters
caamatoscope
dabnariolate
eablansmidal
facolubility
gaablikeness
hadeconwight
iaceulineson
jabification
kabheseeding
lacluntation
maachanavite
nabionership
oabatrophoic
paalodochord
quacefulness
raemonetting
sabalidation
tabjaceously
udnygromissi
vabippareism
wannachanced
yepenousness
zaachnickesh
—13—
abaugescibies
bachanoloical
caamatoscopia
dabnationency
eablamanchium
facontagonite
gaaldrimahedy
hadiaboroness
iachomaniasis
jabimarometer
kabromedizone
lacrusization
maagilinolity
nabitariously
oacantraceous
paanolypaline
quaculiferous
rambreaulowed
sabanucelican
tabjaceousies
uemanociation
vabipparyment
wannachancing
xickingerline
yeryllinemism
zenbhidievine
—14—
abascressionly
bacecification
caamatoscopian
dabnationistic
eacenfigenised
facolubilities
gaarolatically
hacchotization
ibbicarization
jabimarosacily
kaihowfuklench
ladoculsionism
maakursismally
nactualization
oachuloglosynt
paalojiglactry
qansinquirosis
raemoologition
sabracoethygen
tabjaceousness
udnygromoidium
vaceheartedner
wannefictingly
yepfyrotarical
zalaedritellay
—15—
aberyatheberter
badainderedness
caanomaticnatic
dabstologically
eablaneonareous
facophthillahid
gaannificalpous
harrigonishment
ibbicarizations
jaberotherapeus
kabaelesiculous
lamphosescenter
maakuristically
nadastifferling
oachanosophagia
paaminguasechos
quaddractionism
rastarizingness
sabridaboletric
tacdicalization
uemalameisarian
vaceheartedness
wanenolaphonous
ynderapodometer
—16—
abriladothronous
bakoographically
cabalothpization
dactalisingulate
eachematocarpous
fahfoiestheskule
gactiometrically
hadiaboastowning
ibbiographically
jabimoatalophesy
kawaddauriaceous
lamolatrological
maarographically
nadarogenesomacy
ochydramodenomic
paalodorrhaphrin
quaddractimation
rameocrasiferous
saconopasinectic
tachocroytograph
uemanobiological
vegonsculonizing
wandwatalvenwood
yermacographical

—17—
abyranchiatically
baeloazronahumian
cabritometrically
dabsomelscescence
eaticurlegittrial
failonesheeptress
gaarozooenciously
haudacycocetolite
iceiomorphization
jabufedereschilde
kawcayanganasasim
lamphophoraldumal
mabilioistarthine
naniquinpuffyaire
oachryptostecrous
pablinopolization
reaptillification
sabucetarculation
tachyphoschistomy
uemalodeativeness
vegonsculvinalize
whimsellepsitrify
zhonoussitization
—18—
abyinosteracysting
bagoquincification
caccopstherization
dalatosephostomies
eacenfiginembiasis
fantrofingerniness
gaeragotisalgialis
hecalocorpossomies
icemohydrosemuline
jacunceuralization
kaitcholenthythris
leitocartronograph
mabersanthropalous
necrotimoperitoric
oachryptosphorenal
padlandfactiveness
quebunouscephalous
rearmidephenolitic
secrotomyzographic
tachycardometyrous
uenitanisticalness
vellheolinguachure
wanpimmenabilities
yermahvoacetoscoma
—19—
aberyatheldocration
bahandaclionishness
cacethcoalyscraphic
dalanaphorrhachehic
eccolatibidological
fansomosacsimatical
gadiophoressessiric
hadiaboastripangous
icancraticulosality
kelocericostosthene
leliarystallization
mabersanthrological
nercrodyomeberation
odersotenographeral
palanreoncounterite
reconsosentializing
semidezalomolegneal
tagatomotheremotean
unberwrightenedness
velciarcomaryphitis
wenigrassiprulation
—20—
abyogloystelmoiditic
bedaginettaceousness
cachofigarpossometer
dactalismandolitrate
eachtrandrologistric
fedophosphotological
ganroldinocontonosus
henromycorrhhosoidal
iceiolarchythmiamoad
jabimoamordohechmood
kedipercustitalities
macalcromanchamiency
nondenchistentiation
ochyolorenentontagen
palnareoblothiameric
quebrobiogrhecartise
rerepervimestination
scartiometricolastic
talmacoparphocentone
undiffosoliopenazing
velluquithoreterical

—21—
accantosapherochiasis
bemicoloblacontomatic
cachoegnscophystomies
dalificationlessorate
eachygasonaryocarcour
fedorographistrolisan
gadicoarchioscopelous
hedetotypolorphograph
incentularsomoterasia
madychopheniaccuronal
nodaterationalization
octudioflorouphotopia
pechovobbintropnonaic
rechmodechmometrogamo
sabrilostehyricullite
tartosophazoloopellin
undyltracerbandenesol
vereurocerbordohycent
—22—
agniotrophocyclethrine
begipothranmaceraceous
caconsochnecoloscephal
danduocephalomosomeric
egyperyphopothermosate
frachipothostereinitis
gasciocatiosocrasilian
indaaldesitrehenalgian
malcuptisemothanculous
nercroplerographically
oecraumatressesthenibe
peaslothecamonometanic
quebrobiogrhecaryminal
reflesimomolithrosilic
secrotopoidontromastic
tatinochlogacyphologue
undongrensibiliatlemen
—23—
acaraertepitulpeptation
bembenocolbogistromatal
caciceptopomethyleneous
decletopyrrachystolmial
eiyandsceprinainization
galuardicolaristrolcoma
icetoplexistrosthhrenia
lucarucorynchomazintrin
macnchydrogeneumoseable
nonertertabolialization
orchopyrimosalgarositis
pantancoloideculaminone
tanacondrachonomethanic

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news + thoughts

Using Circos in Galaxy Australia Workshop

Thu 20-02-2020

A workshop in using the Circos Galaxy wrapper by Rasche and Hiltemann. Event organized by Australian Biocommons.

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
Using Circos in Galaxy Australia workshop. (zoom)

Download workshop slides.

Galaxy wrapper training materials, Saskia Hiltemann, Helena Rasche, 2020 Visualisation with Circos (Galaxy Training Materials).

Essence of Data Visualization in Bioinformatics Webinar

Thu 20-02-2020

My webinar on fundamental concepts in data visualization and visual communication of scientific data and concepts. Event organized by Australian Biocommons.

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
Essence of Data Visualization in Bioinformatics webinar. (zoom)

Download webinar slides.

Markov models — training and evaluation of hidden Markov models

Thu 20-02-2020

With one eye you are looking at the outside world, while with the other you are looking within yourself.
—Amedeo Modigliani

Following up with our Markov Chain column and Hidden Markov model column, this month we look at how Markov models are trained using the example of biased coin.

We introduce the concepts of forward and backward probabilities and explicitly show how they are calculated in the training process using the Baum-Welch algorithm. We also discuss the value of ensemble models and the use of pseudocounts for cases where rare observations are expected but not necessarily seen.

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
Nature Methods Points of Significance column: Markov models — training and evaluation of hidden Markov models. (read)

Grewal, J., Krzywinski, M. & Altman, N. (2019) Points of significance: Markov models — training and evaluation of hidden Markov models. Nature Methods 17:121–122.

Background reading

Altman, N. & Krzywinski, M. (2019) Points of significance: Hidden Markov models. Nature Methods 16:795–796.

Altman, N. & Krzywinski, M. (2019) Points of significance: Markov Chains. Nature Methods 16:663–664.

Genome Sciences Center 20th Anniversary Clothing, Music, Drinks and Art

Tue 28-01-2020

Science. Timeliness. Respect.

Read about the design of the clothing, music, drinks and art for the Genome Sciences Center 20th Anniversary Celebration, held on 15 November 2019.

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
Luke and Mayia wearing limited edition volunteer t-shirts. The pattern reproduces the human genome with chromosomes as spirals. (zoom)

As part of the celebration and with the help of our engineering team, we framed 48 flow cells from the lab.

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
Precisely engineered frame mounts of flow cells used to sequence genomes in our laboratory. (zoom)

Each flow cell was accompanied by an interpretive plaque explaining the technology behind the flow cell and the sample information and sequence content.

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
The plaque at the back of one of the framed Illumina flow cell. This one has sequence from a patient's lymph node diagnosed with Burkitt's lymphoma. (zoom)

Scientific data visualization: Aesthetic for diagrammatic clarity

Mon 13-01-2020

The scientific process works because all its output is empirically constrained.

My chapter from The Aesthetics of Scientific Data Representation, More than Pretty Pictures, in which I discuss the principles of data visualization and connect them to the concept of "quality" introduced by Robert Pirsig in Zen and the Art of Motorcycle Maintenance.

Yearning for the Infinite — Aleph 2

Mon 18-11-2019

Discover Cantor's transfinite numbers through my music video for the Aleph 2 track of Max Cooper's Yearning for the Infinite (album page, event page).

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
Yearning for the Infinite, Max Cooper at the Barbican Hall, London. Track Aleph 2. Video by Martin Krzywinski. Photo by Michal Augustini. (more)

I discuss the math behind the video and the system I built to create the video.