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Twenty — minutes — maybe — more.Naomichoose four wordsmore quotes

words: fun


See you at Shonan Meeting 167 — Formalizing Biomedical Visualization


language + fiction

Dark Matter of the English Language—the unwords

Words are easy, like the wind;
Faithful friends are hard to find.
—William Shakespeare

unanimals

Critters that definitely don't exist but, perhaps, should.

The backal is probably a feisty biter while the cakmiran probably has a quizzical look. And I would completely avoid the fangol—he sounds like trouble.

A great exercise for kids and the comedic-at-heart would be to try to draw some of these. What would a gakrin look like? Or a gorderish?

Below are the alphabetically first 4–10 letter single-word unanimals for each letter. In some cases, no names of a given length were generated for a given letter.

—4—
aytt
bebe
bick
caen
calb
dalh
dlol
fibl
file
galg
gaon
haen
hale
ilpa
jang
kall
laot
laro
mard
mean
naal
neat
orot
oton
pate
peof
qaid
radc
ranl
saol
shal
tial
walr
weil
—5—
acter
alome
boloo
brata
cabal
capir
dacwo
daxol
fimat
fogon
gatey
geass
haore
heisa
ihire
kardo
kouse
lalpy
lante
malbe
morci
nlreg
nriwe
oacda
omita
paric
ponga
radka
ramep
saage
saako
teart
ufuse
wease
weatl
—6—
acukoe
agtalt
backal
banher
caidat
calepe
dearle
dolpin
eyrita
fangol
gafala
gakrin
haamet
hadnel
iykile
jacang
kagcet
kurdot
lalper
largoz
mamket
mander
narnla
oammim
ooceat
palyus
patble
rarman
ravlil
seaise
seikol
tarbaa
tonele
usrenl
valiss
waatir
whagit
—7—
amreron
apunaed
baadber
balsidd
cadtole
calfasf
daldaug
dalfiso
eolgeal
eomrarf
fondard
gallish
gamymly
hankrer
hokloru
itarato
jatfish
jatwoss
kaister
lamushe
leittoy
madarle
malfash
narddco
nhucasf
oncigut
ootfoto
pakline
parcata
qicsoor
raacbor
raipins
sablrod
sabrilr
tenlrit
tonmede
vansoar
vatkifh
waldfil
walslil
—8—
anlonfow
arnbwict
baieslel
barnnkor
caeffuse
cakmiran
disteale
erhadiol
geepbuwl
golshowo
halalale
hocscist
loicpalt
lruzgind
mannforl
marppuse
obberose
oosgerle
pandleie
perphist
raaldope
ragprerd
saelling
saistiet
tolrfish
valcunle
wadmfish
wasshail
—9—
anlfilher
beigartal
cacdockud
cagccride
gardefand
gorderish
ipilfoyor
keosildor
laechinee
lhallaeye
malpandie
maltreuge
okrerblon
pallanmer
penrhapor
shipopish
shorgeone
ugoflifes
waadarall
waamesder
—10—
asdrosquod
cackemorel
canzlitbar
gaotemtirh
gorofoshew
hirkaflarl
honkerfosh
mapobanadl
moalarfesg
nearretlee
qoarrorule
raccistech
sancockese
sealdhicnh
waagelidhe
weendefish
—11—
condlidilin
cotarleweer
galafonllar
geatingtink
rellswobgry
soridioatar
wolfendelad

Here are all some lists with common suffixes

*ish camfish gallish gawlish gohfish gurrish jatfish mipkish polmish wamfish gorderish shipopish slarmish soulfish tolrfish wadmfish weendefish

*ile halile iykile weadnrile cragiile file gile

*ale anmale calilale disteale halalale hale saale

*use bampuse caeffuse marppuse kouse ufuse

*her banher coocher lorsher anlfilher wher

*tar codtar mistar soridioatar wortautar

*ole rorole cadtole wurkole cole

*ise seaise shoise guceyrise

VIEW ALL

news + thoughts

Using Circos in Galaxy Australia Workshop

Thu 20-02-2020

A workshop in using the Circos Galaxy wrapper by Rasche and Hiltemann. Event organized by Australian Biocommons.

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
Using Circos in Galaxy Australia workshop. (zoom)

Download workshop slides.

Galaxy wrapper training materials, Saskia Hiltemann, Helena Rasche, 2020 Visualisation with Circos (Galaxy Training Materials).

Essence of Data Visualization in Bioinformatics Webinar

Thu 20-02-2020

My webinar on fundamental concepts in data visualization and visual communication of scientific data and concepts. Event organized by Australian Biocommons.

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
Essence of Data Visualization in Bioinformatics webinar. (zoom)

Download webinar slides.

Markov models — training and evaluation of hidden Markov models

Thu 20-02-2020

With one eye you are looking at the outside world, while with the other you are looking within yourself.
—Amedeo Modigliani

Following up with our Markov Chain column and Hidden Markov model column, this month we look at how Markov models are trained using the example of biased coin.

We introduce the concepts of forward and backward probabilities and explicitly show how they are calculated in the training process using the Baum-Welch algorithm. We also discuss the value of ensemble models and the use of pseudocounts for cases where rare observations are expected but not necessarily seen.

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
Nature Methods Points of Significance column: Markov models — training and evaluation of hidden Markov models. (read)

Grewal, J., Krzywinski, M. & Altman, N. (2019) Points of significance: Markov models — training and evaluation of hidden Markov models. Nature Methods 17:121–122.

Background reading

Altman, N. & Krzywinski, M. (2019) Points of significance: Hidden Markov models. Nature Methods 16:795–796.

Altman, N. & Krzywinski, M. (2019) Points of significance: Markov Chains. Nature Methods 16:663–664.

Genome Sciences Center 20th Anniversary Clothing, Music, Drinks and Art

Tue 28-01-2020

Science. Timeliness. Respect.

Read about the design of the clothing, music, drinks and art for the Genome Sciences Center 20th Anniversary Celebration, held on 15 November 2019.

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
Luke and Mayia wearing limited edition volunteer t-shirts. The pattern reproduces the human genome with chromosomes as spirals. (zoom)

As part of the celebration and with the help of our engineering team, we framed 48 flow cells from the lab.

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
Precisely engineered frame mounts of flow cells used to sequence genomes in our laboratory. (zoom)

Each flow cell was accompanied by an interpretive plaque explaining the technology behind the flow cell and the sample information and sequence content.

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
The plaque at the back of one of the framed Illumina flow cell. This one has sequence from a patient's lymph node diagnosed with Burkitt's lymphoma. (zoom)

Scientific data visualization: Aesthetic for diagrammatic clarity

Mon 13-01-2020

The scientific process works because all its output is empirically constrained.

My chapter from The Aesthetics of Scientific Data Representation, More than Pretty Pictures, in which I discuss the principles of data visualization and connect them to the concept of "quality" introduced by Robert Pirsig in Zen and the Art of Motorcycle Maintenance.

Yearning for the Infinite — Aleph 2

Mon 18-11-2019

Discover Cantor's transfinite numbers through my music video for the Aleph 2 track of Max Cooper's Yearning for the Infinite (album page, event page).

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
Yearning for the Infinite, Max Cooper at the Barbican Hall, London. Track Aleph 2. Video by Martin Krzywinski. Photo by Michal Augustini. (more)

I discuss the math behind the video and the system I built to create the video.