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Trance opera—Spente le Stellebe dramaticmore quotes

c: 2


In Silico Flurries: Computing a world of snow. Scientific American. 23 December 2017


data visualization + art

If you like space, you'll love my 2017 Pi Day art which imagines the digits as a star catalogue. Meet the Quagga and Aurochs—the Constellations in this sky are extinct animals and plants.

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from an undefined
place,
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create (a place)
an account
of us
— Viorica Hrincu

Sometimes when you stare at the void, the void sends you a poem.

Universe—Superclusters and Voids

Universe - Superclusters and Voids / Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
The Universe — Superclustesr and Voids. The two supergalactic hemispheres showing Abell clusters (blue), superclusters (magenta) and voids (black) within a distance of 6,000 million light-years from the Milky Way.

The average density of the universe is about `10 \times 10^{-30} \text{ g/cm}^3` or about 6 protons per cubic meter. This should put some perspective in what we mean when we speak about voids as "underdense regions".

Before you delve into the background material for the map, calm the nerves and awaken the imagination with these space-themed tunes.

Perfect to listen to while perusing the map ... or the terrain.

Music

2 Wicky by Hooverphonic (Live at Koningin Elisabethzaal 2012)

Space walk by Lemon Jelly

Exploration by Karminsky Experience Inc.

100 Billion Stars by Lux

Journey through the Boötes Void by Scott Lawlor

Ok, now let's get to it.

Combined and parsed catalogues

The individual catalogues of objects (stars, clusters, superclusters, voids) shown on the map are available as a parsed single file.

      n TYPE
  ----- ------------
      2 quasar
   1024 supercluster
   2555 void
   5250 abell
   9096 hr
  18707 zwicky

Each element is represented by a single line and all objects start with the same fields:

TYPE ID CONSTELLATION NAME                  
  radec RA DEC                               
  lb GALACTIC_LONG GALACTGIC_LAT              
  sglb SUPERGALACTIC_LONG SUPERGALACTIC_LAT  
  z REDSHIFT d DISTANCE(Mly)                

For some objects the NAME is blank ("-").

In addition to these fields, each object type has additional information.

Abell cluters have the number of galaxies in them (N) and the IDs of the superclusters to which they belong listed.

abell ... count N mscc/sscc ID1,ID2,...

Superclusters have the number of galaxies in them (N), their size (SIZE) and the two constellation of the supercluster's Abell's clusters (same as CONSTELLATION if the supercluster's Abell clusters are all in the same constellation).

supercluster ... count N size SIZE(Mly) con_compound CON_COMPOUND

Voids have their size void ... size SIZE

The stars, taken from the Yale Catalogue of Bright Stars, do not have a distance or redshift but have a magnitude

hr ... mag MAGNITUDE

Individual catalogues

These are the individual catalogues from Vizier used in the map and to create the single parsed file above.

Stars

V/50 Bright Star Catalogue, 5th Revised Ed., Hoffleit+, 1991

Abell clusters

VII/110A Rich Clusters of Galaxies, Abell+, 1989

VII/4A Abell and Zwicky Clusters of Galaxies, Abell+, 1974

Abell redshifts

VII/56 Redshifts for Abell Clusters, Sarazin+, 1982

J/APJ/365/66 Redshifts of a sample of distant Abell clusters, Huchra+, 1990

VII/165A Measured Redshifts of Abell Clusters of Galaxies, Andernach, 1991

VII/177 Redshifts and Velocity Dispersions for Abell Clusters, Struble+, 1991

J/APJS/96/343 Redshifts of rich clusters of galaxies, Quintana+, 1995

J/A+A/310/8 The ESO Nearby Abell Cluster Survey I., Katgert+, 1996

J/A+A/310/31 The ESO Nearby Abell Cluster Survey. II., Mazure+, 1996

J/APJS/126/1 Abell clusters photometry, Quintana+, 2000

J/AJ/126/119 Optical and radio data for rich Abell clusters, Rizza+, 2003

Zwicky clusters

VII/190 Zwicky Galaxy Catalog, Zwicky+, 1968

J/PASP/111/438 Updated Zwicky catalog (UZC), Falco+, 1999

Superclusters

J/MNRAS/445/4073 Two catalogues of superclusters, Chow-Martinez+, 2014

Voids

J/APJ/744/82 Catalog of cosmic voids from the SDSS-DR7, Varela+, 2012

J/MNRAS/440/1248 SDSS DR7 voids and superclusters, Nadathur+, 2014

J/APJ/835/161 A cosmic void catalog of SDSS DR12 BOSS galaxies, Mao+, 2017

Constellations

VI/42 Identification of a Constellation From Position, Roman, 1987

Literature and online references

Good places to start your exploration of the Universe.

Stars

Hoffleit, D. & Warren, Jr., W.H. The Bright Star Catalog, 5th Revised Edition (Preliminary Version) (1991)

Constellations

Roman N.G. Identification of a constellation from a position Publications of the Astronomical Society of the Pacific 99 695–699 (1987)

Constellation list

To determine constellation shapes, I originally started with a list by Marc van der Sluys

BSC (Yale Catalogue of Bright Stars) constellation edges by Marc van der Sluys

However, many of these constellations were not the asterisms sanctioned by the IAU. I therefore corrected all the constellation shapes by manually examining the IAU map and cross-referencing the stars to the Yale Catalogue of Bright Stars. Ugh.

IAU Constellation shapes as edges between BSC stars (Yale Catalogue of Bright Stars) by Martin Krzywinski

For more details about the constellations see my IAU Constellation Shape Resources.

Clusters

Abell clusters [Wikipedia]

Abell, G.O. The distribution of rich clusters of galaxies. A catalog of 2712 rich clusters found on the National Geographic Society Palomar Observatory Sky Survey The Astrophysical Journal Supplement Series 3 211–88 (1958)

LC 1101: supergiant elliptical galaxy [Wikipedia]

Abell 2029 galaxy cluster [Wikipedia]

Superclusters

The universe within 2 billion light years. by Richard Powell

Voids

Finelli F. et al. Supervoids in the WISE–2MASS catalogue imprinting cold spots in the cosmic microwave background Monthly Notices of the Royal Astronomical Society 455 (2016)

Kopylov A.I. & Kopylova F.G. Search for streaming motion of galaxy clusters around the Giant Void Astronomy and Astrophysics 382 389–396 (2002)

Linder U. et al. The structure of supervoids. I. Void hierarchy in the Northern Local Supervoid. Astronomy and Astrophysics 329–347 (1995)

El-Ad H. & Piran T. Voids in the large-scale structure The Astrophysical Journal 491 421–435 (1997)

List of voids [Wikipedia]

Giant void [Wikipedia]

Boötes void [Wikipedia]

Northern local supervoid [Wikipedia]

Southern local supervoid [Wikipedia]

Eridanus supervoid (CMBR Cold spot) [Wikipedia]

Quasars

J1120+0641 [Wikipedia]

Mortlock D.J. et al A luminous quasar at a redshift of z = 7.085 474 616–619 (2011)

Bañados E. et al An 800-million-solar-mass black hole in a significantly neutral universe at a redshift of 7.5 Nature 553 (2018)

J1342+0928 [Wikipedia]

Coordinate systems

Celestial coordinate system [Wikipedia]

NASA/IPAC Extragalactic Database: Coordinate Transformation & Galactic Extinction Calculator

RA DEC flexible converter by Jan Skowron

Redshift

How far out in the universe can we see? by Harald Lang

Redshift and distance calculator by Edward Wright

Wright, E.L. The Publications of the Astronomical Society of the Pacific 118 1711–1715 (2006)

Loeb, A. Long-term future of extragalactic astronomy Physical Review D 65 047301.1–047301.4 (2002)

Bennett, C.L. et al The 1% Concordance Hubble Constant Astrophysical Journal 794 (2014)

VIEW ALL

news + thoughts

Find and snap to colors in an image

Sat 29-12-2018

One of my color tools, the colorsnap application snaps colors in an image to a set of reference colors and reports their proportion.

Below is Times Square rendered using the colors of the MTA subway lines.


Colors used by the New York MTA subway lines.

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
Times Square in New York City.
Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
Times Square in New York City rendered using colors of the MTA subway lines.
Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
Granger rainbow snapped to subway lines colors from four cities. (zoom)

Take your medicine ... now

Wed 19-12-2018

Drugs could be more effective if taken when the genetic proteins they target are most active.

Design tip: rediscover CMYK primaries.

More of my American Scientific Graphic Science designs

Ruben et al. A database of tissue-specific rhythmically expressed human genes has potential applications in circadian medicine Science Translational Medicine 10 Issue 458, eaat8806.

Predicting with confidence and tolerance

Wed 07-11-2018
I abhor averages. I like the individual case. —J.D. Brandeis.

We focus on the important distinction between confidence intervals, typically used to express uncertainty of a sampling statistic such as the mean and, prediction and tolerance intervals, used to make statements about the next value to be drawn from the population.

Confidence intervals provide coverage of a single point—the population mean—with the assurance that the probability of non-coverage is some acceptable value (e.g. 0.05). On the other hand, prediction and tolerance intervals both give information about typical values from the population and the percentage of the population expected to be in the interval. For example, a tolerance interval can be configured to tell us what fraction of sampled values (e.g. 95%) will fall into an interval some fraction of the time (e.g. 95%).

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
Nature Methods Points of Significance column: Predicting with confidence and tolerance. (read)

Altman, N. & Krzywinski, M. (2018) Points of significance: Predicting with confidence and tolerance Nature Methods 15:843–844.

Background reading

Krzywinski, M. & Altman, N. (2013) Points of significance: Importance of being uncertain. Nature Methods 10:809–810.

4-day Circos course

Wed 31-10-2018

A 4-day introductory course on genome data parsing and visualization using Circos. Prepared for the Bioinformatics and Genome Analysis course in Institut Pasteur Tunis, Tunis, Tunisia.

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
Composite of the kinds of images you will learn to make in this course.

Oryza longistaminata genome cake

Mon 24-09-2018

Data visualization should be informative and, where possible, tasty.

Stefan Reuscher from Bioscience and Biotechnology Center at Nagoya University celebrates a publication with a Circos cake.

The cake shows an overview of a de-novo assembled genome of a wild rice species Oryza longistaminata.

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
Circos cake celebrating Reuscher et al. 2018 publication of the Oryza longistaminata genome.

Optimal experimental design

Tue 31-07-2018
Customize the experiment for the setting instead of adjusting the setting to fit a classical design.

The presence of constraints in experiments, such as sample size restrictions, awkward blocking or disallowed treatment combinations may make using classical designs very difficult or impossible.

Optimal design is a powerful, general purpose alternative for high quality, statistically grounded designs under nonstandard conditions.

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
Nature Methods Points of Significance column: Optimal experimental design. (read)

We discuss two types of optimal designs (D-optimal and I-optimal) and show how it can be applied to a scenario with sample size and blocking constraints.

Smucker, B., Krzywinski, M. & Altman, N. (2018) Points of significance: Optimal experimental design Nature Methods 15:599–600.

Background reading

Krzywinski, M., Altman, N. (2014) Points of significance: Two factor designs. Nature Methods 11:1187–1188.

Krzywinski, M. & Altman, N. (2014) Points of significance: Analysis of variance (ANOVA) and blocking. Nature Methods 11:699–700.

Krzywinski, M. & Altman, N. (2014) Points of significance: Designing comparative experiments. Nature Methods 11:597–598.