Circos in Scientific Literature

1Alexander RP, Fang G, Rozowsky J et al. 2010 Annotating non-coding regions of the genome Nat Rev Genet 11 (8) 559-571.
2Baker M 2010 Epigenome: Mapping in Motion Nature Methods 7 (3) 181-186.
3Clark MJ, Homer N, O'Connor BD et al. 2010 U87MG decoded: the genomic sequence of a cytogenetically aberrant human cancer cell line PLoS Genet 6 (1) e1000832.
4Ding L, Ellis MJ, Li S et al. 2010 Genome remodelling in a basal-like breast cancer metastasis and xenograft Nature 464 (7291) 999-1005.
5Duan Z, Andronescu M, Schutz K et al. 2010 A three-dimensional model of the yeast genome Nature
7Hu Y, Wang K, He X et al. 2010 A Probabilistic Framework for Aligning Paired-end RNA-seq Data Bioinformatics
9Kwei KA, Kung Y, Salari K et al. 2010 Genomic instability in breast cancer: pathogenesis and clinical implications Mol Oncol 4 (3) 255-266.
10Lam HY, Mu XJ, Stutz AM et al. 2010 Nucleotide-resolution analysis of structural variants using BreakSeq and a breakpoint library Nature biotechnology 28 (1) 47-55.
11Ledford H 2010 Big science: The cancer genome challenge Nature 464 (7291) 972-974.
12Lee W, Jiang Z, Liu J et al. 2010 The mutation spectrum revealed by paired genome sequences from a lung cancer patient Nature 465 (7297) 473-477.
15Mandakova T, Joly S, Krzywinski M et al. 2010 Fast Diploidization in Close Mesopolyploid Relatives of Arabidopsis Plant Cell
16Martin JW, Yoshimoto M, Ludkovski O et al. 2010 Analysis of segmental duplications, mouse genome synteny and recurrent cancer-associated amplicons in human chromosome 6p21-p12 Cytogenet Genome Res 128 (4) 199-213.
17Nielsen CB, Cantor M, Dubchak I et al. 2010 Visualizing genomes: techniques and challenges Nat Methods 7 (3 Suppl) S5-S15.
18Paten B, Diekhans M, Earl D et al. 2010 Cactus Graphs for Genome Comparisons In Lecture notes in Computer Science, (ed. 410-425. Springer Berlin (Heidelberg).
20Pleasance ED, Cheetham RK, Stephens PJ et al. 2010 A comprehensive catalogue of somatic mutations from a human cancer genome Nature 463 (7278) 191-196.
21Pleasance ED, Stephens PJ, O'Meara S et al. 2010 A small-cell lung cancer genome with complex signatures of tobacco exposure Nature 463 (7278) 184-190.
22Procter JB, Thompson J, Letunic I et al. 2010 Visualization of multiple alignments, phylogenies and gene family evolution Nat Methods 7 (3 Suppl) S16-25.
23Ravin NV, Galachyants YP, Mardanov AV et al. 2010 Complete sequence of the mitochondrial genome of a diatom alga Synedra acus and comparative analysis of diatom mitochondrial genomes Curr Genet
24Schmutz J, Cannon SB, Schlueter J et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 463 (7278) 178-183.
26Sierra R, Rodriguez RL, Chaves D et al. 2010 Discovery of phytophthora infestans genes expressed in planta through mining of cDNA libraries PLoS One 5 (3) e9847.
27Tomljenovic-Berube AM, Mulder DT, Whiteside MD et al. 2010 Identification of the regulatory logic controlling Salmonella pathoadaptation by the SsrA-SsrB two-component system PLoS Genet 6 (3) e1000875.
28Vonholdt BM, Pollinger JP, Lohmueller KE et al. 2010 Genome-wide SNP and haplotype analyses reveal a rich history underlying dog domestication Nature 464 (7290) 898-902.
29Yasmin A, Kenny JG, Shankar J et al. 2010 Comparative genomics and transduction potential of Enterococcus faecalis temperate bacteriophages J Bacteriol 192 (4) 1122-1130.
30Zeitouni B, Boeva V, Janoueix-Lerosey I et al. 2010 SVDetect: a tool to identify genomic structural variations from paired-end and mate-pair sequencing data Bioinformatics 26 (15) 1895-1896.
32Campbell SJ, Gaulton A, Marshall J et al. 2009 Visualizing the drug target landscape Drug Discov Today 15 (1-2) 3-15.
33Carbone L, Harris RA, Vessere GM et al. 2009 Evolutionary breakpoints in the gibbon suggest association between cytosine methylation and karyotype evolution PLoS Genet 5 (6) e1000538.
34Carver T, Thomson N, Bleasby A et al. 2009 DNAPlotter: circular and linear interactive genome visualization Bioinformatics 25 (1) 119-120.
35Catchen JM, Conery JS, Postlethwait JH 2009 Automated identification of conserved synteny after whole-genome duplication Genome research 19 (8) 1497-1505.
36Cho BK, Zengler K, Qiu Y et al. 2009 The transcription unit architecture of the Escherichia coli genome Nature biotechnology 27 (11) 1043-1049.
37Costello JF, Krzywinski M, Marra MA 2009 A first look at entire human methylomes Nature biotechnology 27 (12) 1130-1132.
38Diguistini S, Liao NY, Platt D et al. 2009 De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data Genome Biol 10 (9) R94.
39Flannery MC 2009 Writing Across Rome The American Biology Teacher 71 (1) 52-55.
40Forbes SA, Tang G, Bindal N et al. 2009 COSMIC (the Catalogue of Somatic Mutations in Cancer): a resource to investigate acquired mutations in human cancer Nucleic Acids Res 38 (Database issue) D652-657.
41Freeman JD, Warren RL, Webb JR et al. 2009 Profiling the T-cell receptor beta-chain repertoire by massively parallel sequencing Genome research 19 (10) 1817-1824.
43Jaillon O, Aury JM, Wincker P 2009 "Changing by doubling", the impact of Whole Genome Duplications in the evolution of eukaryotes C R Biol 332 (2-3) 241-253.
44Krzywinski M, Schein J, Birol I et al. 2009 Circos: an information aesthetic for comparative genomics Genome research 19 (9) 1639-1645.
46Langridge GC, Phan MD, Turner DJ et al. 2009 Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants Genome research 19 (12) 2308-2316.
48McMurdie PJ, Behrens SF, Muller JA et al. 2009 Localized plasticity in the streamlined genomes of vinyl chloride respiring Dehalococcoides PLoS Genet 5 (11) e1000714.
49Meyer C, Kowarz E, Hofmann J et al. 2009 New insights to the MLL recombinome of acute leukemias Leukemia 23 (8) 1490-1499.
50Meyer M, Munzner T, Pfister H 2009 MizBee: a multiscale synteny browser IEEE Trans Vis Comput Graph 15 (6) 897-904.
51Peregrin-Alvarez JM, Xiong X, Su C et al. 2009 The Modular Organization of Protein Interactions in Escherichia coli PLoS Comput Biol 5 (10) e1000523.
52Quraishi UM, Abrouk M, Bolot S et al. 2009 Genomics in cereals: from genome-wide conserved orthologous set (COS) sequences to candidate genes for trait dissection Funct Integr Genomics 9 (4) 473-484.
53Salse J, Abrouk M, Murat F et al. 2009 Improved criteria and comparative genomics tool provide new insights into grass paleogenomics Brief Bioinform 10 (6) 619-630.
54Schnable PS Ware D Fulton RS et al. 2009 The B73 maize genome: complexity, diversity, and dynamics Science 326 (5956) 1112-1115.
55Stephens PJ, McBride DJ, Lin ML et al. 2009 Complex landscapes of somatic rearrangement in human breast cancer genomes Nature 462 (7276) 1005-1010.
57Throude M, Bolot S, Bosio M et al. 2009 Structure and expression analysis of rice paleo duplications Nucleic Acids Res 37 (4) 1248-1259.
61Amadou C, Pascal G, Mangenot S et al. 2008 Genome sequence of the beta-rhizobium Cupriavidus taiwanensis and comparative genomics of rhizobia Genome research 18 (9) 1472-1483.
62Campbell PJ, Stephens PJ, Pleasance ED et al. 2008 Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing Nat Genet
63Durrens P, Nikolski M, Sherman D 2008 Fusion and fission of genes define a metric between fungal genomes PLoS Comput Biol 4 (10) e1000200.
66Tobias CM, Sarath G, Twigg P et al. 2008 Comparative Genomics in Switchgrass Using 61,585 High-Quality Expressed Sequence Tags The Plant Genome 1 (2) 111-124.
68Gherman A, Chen PE, Teslovich TM et al. 2007 Population bottlenecks as a potential major shaping force of human genome architecture PLoS Genet 3 (7) e119.
69Jaillon O, Aury JM, Noel B et al. 2007 The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla Nature 449 (7161) 463-467.
71Lo I, Denef VJ, Verberkmoes NC et al. 2007 Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria Nature 446 (7135) 537-541.
72Moere AV 2007 Aesthetic Data Visualization as a Resource for Educating Creative Design In Computer-Aided Architectural Design Futures 2007: Proceedings of the 12th International CAADFutures Conference, (ed. A Dong, AV Moere, JS Gero), p. 71-84. Springer (Dordrecht).
73Ostrander EA 2007 Genetics and the Shape of Dogs American Scientist 95 (5) 406-413.
74Sirand-Pugnet P, Citti C, Barre A et al. 2007 Evolution of mollicutes: down a bumpy road with twists and turns Res Microbiol 158 (10) 754-766.
75Aury JM, Jaillon O, Duret L et al. 2006 Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia Nature 444 (7116) 171-178.
76Roest Crollius H, Weissenbach J 2005 Fish genomics and biology Genome research 15 (12) 1675-1682.