LOCUS CAKJZR010000000 1190 rc DNA linear INV 01-NOV-2021 DEFINITION Synanthedon vespiformis, whole genome shotgun sequencing project. ACCESSION CAKJZR000000000 VERSION CAKJZR000000000.1 DBLINK BioProject: PRJEB48302 BioSample: SAMEA7701494 KEYWORDS WGS. SOURCE Synanthedon vespiformis ORGANISM Synanthedon vespiformis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Sesioidea; Sesiidae; Sesiinae; Synanthedonini; Synanthedon. REFERENCE 1 (bases 1 to 1190) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (25-OCT-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Synanthedon vespiformis whole genome shotgun (WGS) project has the project accession CAKJZR000000000. This version of the project (01) has the accession number CAKJZR010000000, and consists of sequences CAKJZR010000001-CAKJZR010001190. The assembly ilSynVesp1.1 is based on 94x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Chromosome 23 contains a possible heterozygous inversion 1.45-4.5Mb. We cannot be sure of the orientation of the chromosome between these coordinates. FEATURES Location/Qualifiers source 1..1190 /organism="Synanthedon vespiformis" /mol_type="genomic DNA" /db_xref="taxon:1660703" WGS CAKJZR010000001-CAKJZR010001190 // LOCUS CAKJUZ010000000 4465 rc DNA linear INV 21-OCT-2021 DEFINITION Criorhina berberina, whole genome shotgun sequencing project. ACCESSION CAKJUZ000000000 VERSION CAKJUZ000000000.1 DBLINK BioProject: PRJEB48174 BioSample: SAMEA7701563 Sequence Read Archive: ERR6363267, ERR6363268, ERR6363269, ERR6363270, ERR6363271, ERR6436386 KEYWORDS WGS. SOURCE Criorhina berberina ORGANISM Criorhina berberina Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Syrphoidea; Syrphidae; Eristalinae; Xylotini; Criorhina. REFERENCE 1 (bases 1 to 4465) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (18-OCT-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Criorhina berberina whole genome shotgun (WGS) project has the project accession CAKJUZ000000000. This version of the project (01) has the accession number CAKJUZ010000000, and consists of sequences CAKJUZ010000001-CAKJUZ010004465. The assembly idCriBerb1.1 is based on 38x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Heterozygous inversion at Chromosome 1 - 38.53 - 44.62Mbp. FEATURES Location/Qualifiers source 1..4465 /organism="Criorhina berberina" /mol_type="genomic DNA" /db_xref="taxon:2663927" WGS CAKJUZ010000001-CAKJUZ010004465 // LOCUS CAKJUW010000000 771 rc DNA linear INV 21-OCT-2021 DEFINITION Limnephilus marmoratus, whole genome shotgun sequencing project. ACCESSION CAKJUW000000000 VERSION CAKJUW000000000.1 DBLINK BioProject: PRJEB48178 BioSample: SAMEA7520990 Sequence Read Archive: ERR6688485, ERR6688486, ERR6688487, ERR6688488, ERR6688489, ERR6688490, ERR6688491, ERR6688492, ERR6688493, ERR6688494, ERR6807999, ERR6939236 KEYWORDS WGS. SOURCE Limnephilus marmoratus ORGANISM Limnephilus marmoratus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Trichoptera; Integripalpia; Plenitentoria; Limnephiloidea; Limnephilidae; Limnephilinae; Limnephilini; Limnephilus. REFERENCE 1 (bases 1 to 771) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (18-OCT-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Limnephilus marmoratus whole genome shotgun (WGS) project has the project accession CAKJUW000000000. This version of the project (01) has the accession number CAKJUW010000000, and consists of sequences CAKJUW010000001-CAKJUW010000771. The assembly iiLimMarm1.1 is based on 28x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Chromosome 2 and 8 have a high level of shared Hi-C signal which seems likely to result from a high proportion of shared repeat. FEATURES Location/Qualifiers source 1..771 /organism="Limnephilus marmoratus" /mol_type="genomic DNA" /db_xref="taxon:1271730" WGS CAKJUW010000001-CAKJUW010000771 // LOCUS CAKJUV010000000 1250 rc DNA linear INV 21-OCT-2021 DEFINITION Selenia dentaria, whole genome shotgun sequencing project. ACCESSION CAKJUV000000000 VERSION CAKJUV000000000.1 DBLINK BioProject: PRJEB48176 BioSample: SAMEA7701559 Sequence Read Archive: ERR6688610, ERR6688611, ERR6688612, ERR6688613, ERR6688614, ERR6939252, ERR6939253 KEYWORDS WGS. SOURCE Selenia dentaria ORGANISM Selenia dentaria Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Ennominae; Selenia. REFERENCE 1 (bases 1 to 1250) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (18-OCT-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Selenia dentaria whole genome shotgun (WGS) project has the project accession CAKJUV000000000. This version of the project (01) has the accession number CAKJUV010000000, and consists of sequences CAKJUV010000001-CAKJUV010001250. The assembly ilSelDent1.1 is based on 25x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..1250 /organism="Selenia dentaria" /mol_type="genomic DNA" /db_xref="taxon:934894" WGS CAKJUV010000001-CAKJUV010001250 // LOCUS CAKJUN010000000 37 rc DNA linear INV 21-OCT-2021 DEFINITION Limnephilus marmoratus, whole genome shotgun sequencing project. ACCESSION CAKJUN000000000 VERSION CAKJUN000000000.1 DBLINK BioProject: PRJEB48179 BioSample: SAMEA7520990 Sequence Read Archive: ERR6688485, ERR6688486, ERR6688487, ERR6688488, ERR6688489, ERR6688490, ERR6688491, ERR6688492, ERR6688493, ERR6688494, ERR6807999, ERR6939236 KEYWORDS WGS. SOURCE Limnephilus marmoratus ORGANISM Limnephilus marmoratus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Trichoptera; Integripalpia; Plenitentoria; Limnephiloidea; Limnephilidae; Limnephilinae; Limnephilini; Limnephilus. REFERENCE 1 (bases 1 to 37) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (18-OCT-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Limnephilus marmoratus whole genome shotgun (WGS) project has the project accession CAKJUN000000000. This version of the project (01) has the accession number CAKJUN010000000, and consists of sequences CAKJUN010000001-CAKJUN010000037. The assembly iiLimMarm1.1 is based on 28x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Chromosome 2 and 8 have a high level of shared Hi-C signal which seems likely to result from a high proportion of shared repeat. FEATURES Location/Qualifiers source 1..37 /organism="Limnephilus marmoratus" /mol_type="genomic DNA" /db_xref="taxon:1271730" WGS CAKJUN010000001-CAKJUN010000037 // LOCUS CAKJUM010000000 37 rc DNA linear INV 21-OCT-2021 DEFINITION Selenia dentaria, whole genome shotgun sequencing project. ACCESSION CAKJUM000000000 VERSION CAKJUM000000000.1 DBLINK BioProject: PRJEB48177 BioSample: SAMEA7701559 Sequence Read Archive: ERR6688610, ERR6688611, ERR6688612, ERR6688613, ERR6688614, ERR6939252, ERR6939253 KEYWORDS WGS. SOURCE Selenia dentaria ORGANISM Selenia dentaria Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Ennominae; Selenia. REFERENCE 1 (bases 1 to 37) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (18-OCT-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Selenia dentaria whole genome shotgun (WGS) project has the project accession CAKJUM000000000. This version of the project (01) has the accession number CAKJUM010000000, and consists of sequences CAKJUM010000001-CAKJUM010000037. The assembly ilSelDent1.1 is based on 25x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..37 /organism="Selenia dentaria" /mol_type="genomic DNA" /db_xref="taxon:934894" WGS CAKJUM010000001-CAKJUM010000037 // LOCUS CAKJUL010000000 23 rc DNA linear INV 21-OCT-2021 DEFINITION Criorhina berberina, whole genome shotgun sequencing project. ACCESSION CAKJUL000000000 VERSION CAKJUL000000000.1 DBLINK BioProject: PRJEB48175 BioSample: SAMEA7701563 Sequence Read Archive: ERR6363267, ERR6363268, ERR6363269, ERR6363270, ERR6363271, ERR6436386 KEYWORDS WGS. SOURCE Criorhina berberina ORGANISM Criorhina berberina Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Syrphoidea; Syrphidae; Eristalinae; Xylotini; Criorhina. REFERENCE 1 (bases 1 to 23) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (18-OCT-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Criorhina berberina whole genome shotgun (WGS) project has the project accession CAKJUL000000000. This version of the project (01) has the accession number CAKJUL010000000, and consists of sequences CAKJUL010000001-CAKJUL010000023. The assembly idCriBerb1.1 is based on 38x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Heterozygous inversion at Chromosome 1 - 38.53 - 44.62Mbp. FEATURES Location/Qualifiers source 1..23 /organism="Criorhina berberina" /mol_type="genomic DNA" /db_xref="taxon:2663927" WGS CAKJUL010000001-CAKJUL010000023 // LOCUS CAJUYF020000000 2165 rc DNA linear VRT 01-NOV-2021 DEFINITION Pholis gunnellus, whole genome shotgun sequencing project. ACCESSION CAJUYF000000000 VERSION CAJUYF000000000.2 DBLINK BioProject: PRJEB45448 BioSample: SAMEA7522838 KEYWORDS WGS. SOURCE Pholis gunnellus (rock gunnel) ORGANISM Pholis gunnellus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Zoarcales; Pholidae; Pholis. REFERENCE 1 (bases 1 to 2165) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (04-JUN-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 2165) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (25-OCT-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT On Nov 18, 2021 this sequence version replaced CAJUYF000000000.1. The Pholis gunnellus whole genome shotgun (WGS) project has the project accession CAJUYF000000000. This version of the project (02) has the accession number CAJUYF020000000, and consists of sequences CAJUYF020000001-CAJUYF020002165. The assembly fPhoGun1.2 is based on 45x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..2165 /organism="Pholis gunnellus" /mol_type="genomic DNA" /db_xref="taxon:56726" WGS CAJUYF020000001-CAJUYF020002165 // LOCUS CAJUXR020000000 76 rc DNA linear VRT 01-NOV-2021 DEFINITION Pholis gunnellus, whole genome shotgun sequencing project. ACCESSION CAJUXR000000000 VERSION CAJUXR000000000.2 DBLINK BioProject: PRJEB45449 BioSample: SAMEA7522838 KEYWORDS WGS. SOURCE Pholis gunnellus (rock gunnel) ORGANISM Pholis gunnellus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Zoarcales; Pholidae; Pholis. REFERENCE 1 (bases 1 to 76) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (04-JUN-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 76) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (25-OCT-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT On Nov 18, 2021 this sequence version replaced CAJUXR000000000.1. The Pholis gunnellus whole genome shotgun (WGS) project has the project accession CAJUXR000000000. This version of the project (02) has the accession number CAJUXR020000000, and consists of sequences CAJUXR020000001-CAJUXR020000076. The assembly fPhoGun1.2 is based on 45x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..76 /organism="Pholis gunnellus" /mol_type="genomic DNA" /db_xref="taxon:56726" WGS CAJUXR020000001-CAJUXR020000076 // LOCUS CAJRBF020000000 24 rc DNA linear INV 01-NOV-2021 DEFINITION Zygaena filipendulae, whole genome shotgun sequencing project. ACCESSION CAJRBF000000000 VERSION CAJRBF000000000.2 DBLINK BioProject: PRJEB44634 BioSample: SAMEA7519846 KEYWORDS WGS. SOURCE Zygaena filipendulae ORGANISM Zygaena filipendulae Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Zygaenoidea; Zygaenidae; Zygaeninae; Zygaena. REFERENCE 1 (bases 1 to 24) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (29-APR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 24) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (25-OCT-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT On Nov 18, 2021 this sequence version replaced CAJRBF000000000.1. The Zygaena filipendulae whole genome shotgun (WGS) project has the project accession CAJRBF000000000. This version of the project (02) has the accession number CAJRBF020000000, and consists of sequences CAJRBF020000001-CAJRBF020000024. The assembly ilZygFili1.2 is based on 58x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..24 /organism="Zygaena filipendulae" /mol_type="genomic DNA" /db_xref="taxon:287375" WGS CAJRBF020000001-CAJRBF020000024 // LOCUS CAJRBE020000000 417 rc DNA linear INV 01-NOV-2021 DEFINITION Zygaena filipendulae, whole genome shotgun sequencing project. ACCESSION CAJRBE000000000 VERSION CAJRBE000000000.2 DBLINK BioProject: PRJEB44635 BioSample: SAMEA7519846 KEYWORDS WGS. SOURCE Zygaena filipendulae ORGANISM Zygaena filipendulae Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Zygaenoidea; Zygaenidae; Zygaeninae; Zygaena. REFERENCE 1 (bases 1 to 417) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (29-APR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 417) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (25-OCT-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT On Nov 18, 2021 this sequence version replaced CAJRBE000000000.1. The Zygaena filipendulae whole genome shotgun (WGS) project has the project accession CAJRBE000000000. This version of the project (02) has the accession number CAJRBE020000000, and consists of sequences CAJRBE020000001-CAJRBE020000417. The assembly ilZygFili1.2 is based on 58x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..417 /organism="Zygaena filipendulae" /mol_type="genomic DNA" /db_xref="taxon:287375" WGS CAJRBE020000001-CAJRBE020000417 // LOCUS CAJQFL020000000 20 rc DNA linear INV 01-NOV-2021 DEFINITION Hedya salicella, whole genome shotgun sequencing project. ACCESSION CAJQFL000000000 VERSION CAJQFL000000000.2 DBLINK BioProject: PRJEB43994 BioSample: SAMEA7520688 KEYWORDS WGS. SOURCE Hedya salicella ORGANISM Hedya salicella Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Tortricoidea; Tortricidae; Olethreutinae; Olethreutini; Hedya. REFERENCE 1 (bases 1 to 20) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (29-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 20) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (25-OCT-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT On Nov 18, 2021 this sequence version replaced CAJQFL000000000.1. The Hedya salicella whole genome shotgun (WGS) project has the project accession CAJQFL000000000. This version of the project (02) has the accession number CAJQFL020000000, and consists of sequences CAJQFL020000001-CAJQFL020000020. The assembly ilHedSali1.2 is based on 25x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..20 /organism="Hedya salicella" /mol_type="genomic DNA" /db_xref="taxon:1869985" WGS CAJQFL020000001-CAJQFL020000020 // LOCUS CAJQFJ020000000 1461 rc DNA linear INV 01-NOV-2021 DEFINITION Hedya salicella, whole genome shotgun sequencing project. ACCESSION CAJQFJ000000000 VERSION CAJQFJ000000000.2 DBLINK BioProject: PRJEB43995 BioSample: SAMEA7520688 KEYWORDS WGS. SOURCE Hedya salicella ORGANISM Hedya salicella Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Tortricoidea; Tortricidae; Olethreutinae; Olethreutini; Hedya. REFERENCE 1 (bases 1 to 1461) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (29-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 1461) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (25-OCT-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT On Nov 18, 2021 this sequence version replaced CAJQFJ000000000.1. The Hedya salicella whole genome shotgun (WGS) project has the project accession CAJQFJ000000000. This version of the project (02) has the accession number CAJQFJ020000000, and consists of sequences CAJQFJ020000001-CAJQFJ020001461. The assembly ilHedSali1.2 is based on 25x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..1461 /organism="Hedya salicella" /mol_type="genomic DNA" /db_xref="taxon:1869985" WGS CAJQFJ020000001-CAJQFJ020001461 // LOCUS CAKAOP010000000 1259 rc DNA linear INV 19-OCT-2021 DEFINITION Agrochola macilenta, whole genome shotgun sequencing project. ACCESSION CAKAOP000000000 VERSION CAKAOP000000000.1 DBLINK BioProject: PRJEB47750 BioSample: SAMEA8603207 KEYWORDS WGS. SOURCE Agrochola macilenta ORGANISM Agrochola macilenta Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Agrochola. REFERENCE 1 (bases 1 to 1259) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (29-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Agrochola macilenta whole genome shotgun (WGS) project has the project accession CAKAOP000000000. This version of the project (01) has the accession number CAKAOP010000000, and consists of sequences CAKAOP010000001-CAKAOP010001259. The assembly ilAgrMaci1.1 is based on 28x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..1259 /organism="Agrochola macilenta" /mol_type="genomic DNA" /db_xref="taxon:987872" WGS CAKAOP010000001-CAKAOP010001259 // LOCUS CAKAOO010000000 3 rc DNA linear INV 19-OCT-2021 DEFINITION Agrochola macilenta, whole genome shotgun sequencing project. ACCESSION CAKAOO000000000 VERSION CAKAOO000000000.1 DBLINK BioProject: PRJEB47751 BioSample: SAMEA8603207 KEYWORDS WGS. SOURCE Agrochola macilenta ORGANISM Agrochola macilenta Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Agrochola. REFERENCE 1 (bases 1 to 3) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (29-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Agrochola macilenta whole genome shotgun (WGS) project has the project accession CAKAOO000000000. This version of the project (01) has the accession number CAKAOO010000000, and consists of sequences CAKAOO010000001-CAKAOO010000003. The assembly ilAgrMaci1.1 is based on 28x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..3 /organism="Agrochola macilenta" /mol_type="genomic DNA" /db_xref="taxon:987872" WGS CAKAOO010000001-CAKAOO010000003 // LOCUS JAJIAZ010000000 1199 rc DNA linear MAM 10-NOV-2021 DEFINITION Diceros bicornis minor isolate mBicDic1, whole genome shotgun sequencing project. ACCESSION JAJIAZ000000000 VERSION JAJIAZ000000000.1 DBLINK BioProject: PRJNA773943 BioSample: SAMN22047685 KEYWORDS WGS. SOURCE Diceros bicornis minor ORGANISM Diceros bicornis minor Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Rhinocerotidae; Diceros. REFERENCE 1 (bases 1 to 1199) AUTHORS Koepfli,K.-P., Pukazhenthi,B., Formenti,G., Balacco,J., Mountcastle,J., Tracey,A., Sims,Y., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Diceros bicornis minor (Southern black rhinoceros), mBicDic1, paternal haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 1199) AUTHORS Koepfli,K.-P., Pukazhenthi,B., Formenti,G., Balacco,J., Mountcastle,J., Tracey,A., Sims,Y., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (30-OCT-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Diceros bicornis minor whole genome shotgun (WGS) project has the project accession JAJIAZ000000000. This version of the project (01) has the accession number JAJIAZ010000000, and consists of sequences JAJIAZ010000001-JAJIAZ010001199. ##Genome-Assembly-Data-START## Assembly Date :: 16-JUL-2021 Assembly Method :: Trio HiFiasm v. 0.15.1-r329; Bionano Solve v. 3.6.1_11162020; Salsa v. 2.2 Assembly Name :: mDicBic1.pat.decon Diploid :: Alternate Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 30.57x Sequencing Technology :: PacBio Sequel II HiFi; Bionano Genomics DLS; Illumina HiSeq; Arima Genomics Hi-C v2 ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1199 /organism="Diceros bicornis minor" /mol_type="genomic DNA" /isolate="mBicDic1" /sub_species="minor" /db_xref="taxon:77932" /sex="female" /tissue_type="blood" /dev_stage="juvenile" /country="USA" /lat_lon="32.1795 N 97.7972 W" /collected_by="Budhan Pukazhenthi" WGS JAJIAZ010000001-JAJIAZ010001199 // LOCUS JAJIAY010000000 1075 rc DNA linear MAM 10-NOV-2021 DEFINITION Diceros bicornis minor isolate mBicDic1, whole genome shotgun sequencing project. ACCESSION JAJIAY000000000 VERSION JAJIAY000000000.1 DBLINK BioProject: PRJNA773944 BioSample: SAMN22047685 KEYWORDS WGS. SOURCE Diceros bicornis minor ORGANISM Diceros bicornis minor Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Rhinocerotidae; Diceros. REFERENCE 1 (bases 1 to 1075) AUTHORS Koepfli,K.-P., Pukazhenthi,B., Formenti,G., Balacco,J., Mountcastle,J., Tracey,A., Sims,Y., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Diceros bicornis minor (Southern black rhinoceros), mBicDic1, maternal haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 1075) AUTHORS Koepfli,K.-P., Pukazhenthi,B., Formenti,G., Balacco,J., Mountcastle,J., Tracey,A., Sims,Y., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (30-OCT-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Diceros bicornis minor whole genome shotgun (WGS) project has the project accession JAJIAY000000000. This version of the project (01) has the accession number JAJIAY010000000, and consists of sequences JAJIAY010000001-JAJIAY010001075. ##Genome-Assembly-Data-START## Assembly Date :: 16-JUL-2021 Assembly Method :: Trio HiFiasm v. 0.15.1-r329; Bionano Solve v. 3.6.1_11162020; Salsa v. 2.2 Assembly Name :: mDicBic1.mat.cur Diploid :: Principal Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 30.57x Sequencing Technology :: PacBio Sequel II HiFi; Bionano Genomics DLS; Illumina HiSeq; Arima Genomics Hi-C v2 ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1075 /organism="Diceros bicornis minor" /mol_type="genomic DNA" /isolate="mBicDic1" /sub_species="minor" /db_xref="taxon:77932" /sex="female" /tissue_type="blood" /dev_stage="juvenile" /country="USA" /lat_lon="32.1795 N 97.7972 W" /collected_by="Budhan Pukazhenthi" WGS JAJIAY010000001-JAJIAY010001075 WGS_SCAFLD CM036946-CM036987 // LOCUS JAJHSZ010000000 178 rc DNA linear VRT 08-NOV-2021 DEFINITION Porphyrio hochstetteri isolate bPorHoc1, whole genome shotgun sequencing project. ACCESSION JAJHSZ000000000 VERSION JAJHSZ000000000.1 DBLINK BioProject: PRJNA774332 BioSample: SAMN22550412 KEYWORDS WGS. SOURCE Porphyrio hochstetteri (South Island takahe) ORGANISM Porphyrio hochstetteri Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Rallidae; Porphyrio. REFERENCE 1 (bases 1 to 178) AUTHORS Urban,L., Digby,A., Eason,D., Vercoe,D., Gemmell,N., Formenti,G., Balacco,J., Mountcastle,J., Fedrigo,O., Jarvis,E.D. and Takahe Recovery Program,P. TITLE Porphyrio hochstetteri (takahe) genome, bPorHoc1, paternal haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 178) AUTHORS Urban,L., Digby,A., Eason,D., Vercoe,D., Gemmell,N., Formenti,G., Balacco,J., Mountcastle,J., Fedrigo,O., Jarvis,E.D. and Takahe Recovery Program,P. TITLE Direct Submission JOURNAL Submitted (31-OCT-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Porphyrio hochstetteri whole genome shotgun (WGS) project has the project accession JAJHSZ000000000. This version of the project (01) has the accession number JAJHSZ010000000, and consists of sequences JAJHSZ010000001-JAJHSZ010000178. ##Genome-Assembly-Data-START## Assembly Date :: 20-JUL-2021 Assembly Method :: Trio HiFiasm v. 0.15.1-r329; purge_dups v. 1.2.5; Bionano Solve v. 3.6.1_11162020; Salsa v. 2.3; gEVAL manual curation v. 2021-07-20; cutadapt (done in beginning) v. 3.2 Assembly Name :: bPorHoc1.pat.decon Diploid :: Alternate Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 36.82x Sequencing Technology :: PacBio Sequel II HiFi; Bionano Genomics DLS; Illumina HiSeq; Arima Genomics Hi-C v2 ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..178 /organism="Porphyrio hochstetteri" /mol_type="genomic DNA" /isolate="bPorHoc1" /db_xref="taxon:439704" /sex="female" /tissue_type="blood" /dev_stage="juvenile" /country="New Zealand: Burwood" /lat_lon="43.499998 S 172.6999972 E" /collection_date="2020-02-13" /collected_by="Glen Greaves" WGS JAJHSZ010000001-JAJHSZ010000178 // LOCUS JAJHSY010000000 174 rc DNA linear VRT 08-NOV-2021 DEFINITION Porphyrio hochstetteri isolate bPorHoc1, whole genome shotgun sequencing project. ACCESSION JAJHSY000000000 VERSION JAJHSY000000000.1 DBLINK BioProject: PRJNA774331 BioSample: SAMN22550412 KEYWORDS WGS. SOURCE Porphyrio hochstetteri (South Island takahe) ORGANISM Porphyrio hochstetteri Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Rallidae; Porphyrio. REFERENCE 1 (bases 1 to 174) AUTHORS Urban,L., Digby,A., Eason,D., Vercoe,D., Gemmell,N., Formenti,G., Balacco,J., Mountcastle,J., Fedrigo,O., Jarvis,E.D. and Takahe Recovery Program,P. TITLE Porphyrio hochstetteri (takahe) genome, bPorHoc1, maternal + Z haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 174) AUTHORS Urban,L., Digby,A., Eason,D., Vercoe,D., Gemmell,N., Formenti,G., Balacco,J., Mountcastle,J., Fedrigo,O., Jarvis,E.D. and Takahe Recovery Program,P. TITLE Direct Submission JOURNAL Submitted (06-NOV-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Porphyrio hochstetteri whole genome shotgun (WGS) project has the project accession JAJHSY000000000. This version of the project (01) has the accession number JAJHSY010000000, and consists of sequences JAJHSY010000001-JAJHSY010000174. ##Genome-Assembly-Data-START## Assembly Date :: 06-NOV-2021 Assembly Method :: Trio HiFiasm v. 0.15.1-r329; purge_dups v. 1.2.5; Bionano Solve v. 3.6.1_11162020; Salsa v. 2.3; gEVAL manual curation v. 2021-07-20; VGP trio pipeline v. 2.0; cutadapt (done in beginning) v. 3.2; gEVAL manual curation v. 2021-11-06 Assembly Name :: bPorHoc1.mat.Z.cur Diploid :: Principal Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 36.82x Sequencing Technology :: PacBio Sequel II HiFi; Bionano Genomics DLS; Illumina HiSeq; Arima Genomics Hi-C v2 ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..174 /organism="Porphyrio hochstetteri" /mol_type="genomic DNA" /isolate="bPorHoc1" /db_xref="taxon:439704" /sex="female" /tissue_type="blood" /dev_stage="juvenile" /country="New Zealand: Burwood" /lat_lon="43.499998 S 172.6999972 E" /collection_date="2020-02-13" /collected_by="Glen Greaves" WGS JAJHSY010000001-JAJHSY010000174 WGS_SCAFLD CM036905-CM036939 // LOCUS JAJGRZ010000000 4000 rc DNA linear VRT 05-NOV-2021 DEFINITION Hemiscyllium ocellatum isolate sHemOce1, whole genome shotgun sequencing project. ACCESSION JAJGRZ000000000 VERSION JAJGRZ000000000.1 DBLINK BioProject: PRJNA774309 BioSample: SAMN22550098 KEYWORDS WGS. SOURCE Hemiscyllium ocellatum (epaulette shark) ORGANISM Hemiscyllium ocellatum Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Orectolobiformes; Hemiscylliidae; Hemiscyllium. REFERENCE 1 (bases 1 to 4000) AUTHORS Naylor,G., Burgess,S., Fedrigo,O., Schartl,M., Currie,P., Tulenko,F., Balacco,J., Mountcastle,J., Haase,B., Tracey,A., Sims,Y., Howe,K., Mullikin,J. and Jarvis,E.D. TITLE Hemiscyllium ocellatum (epaulette shark) genome, sHemOce1, maternal haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 4000) AUTHORS Naylor,G., Burgess,S., Fedrigo,O., Schartl,M., Currie,P., Tulenko,F., Balacco,J., Mountcastle,J., Haase,B., Tracey,A., Sims,Y., Howe,K., Mullikin,J. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (31-OCT-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Hemiscyllium ocellatum whole genome shotgun (WGS) project has the project accession JAJGRZ000000000. This version of the project (01) has the accession number JAJGRZ010000000, and consists of sequences JAJGRZ010000001-JAJGRZ010004000. ##Genome-Assembly-Data-START## Assembly Date :: 28-MAY-2021 Assembly Method :: TrioCanu v. 2.1; purge_dups v. 1.2.5; Scaff 10x v. 4.2; Bionano Solve v. 3.6.1_11162020; Salsa2 HiC v. 2.2; variantCaller v. 2.3.3; Longranger Align v. 2.2.2; Freebayes v. 1.3; gEVAL manual curation v. 2021-05-28; VGP pipeline v. 1.6 Assembly Name :: sHemOce1.mat.decon Diploid :: Alternate Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 148.57x Sequencing Technology :: PacBio Sequel II CLR; Illumina NovaSeq; Bionano Genomics DLS; Arima Genomics Hi-C v1 ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..4000 /organism="Hemiscyllium ocellatum" /mol_type="genomic DNA" /isolate="sHemOce1" /specimen_voucher="Juvenile #1654" /db_xref="taxon:170820" /sex="male" /tissue_type="spleen" /dev_stage="juvenile" /country="Australia: Clayton, Melbourne, Victoria" /lat_lon="37.9105 S 145.1293 E" /collection_date="2019-01-02" /collected_by="Frank Tulenko" WGS JAJGRZ010000001-JAJGRZ010004000 // LOCUS JAJGRY010000000 1963 rc DNA linear VRT 05-NOV-2021 DEFINITION Hemiscyllium ocellatum isolate sHemOce1, whole genome shotgun sequencing project. ACCESSION JAJGRY000000000 VERSION JAJGRY000000000.1 DBLINK BioProject: PRJNA774310 BioSample: SAMN22550098 KEYWORDS WGS. SOURCE Hemiscyllium ocellatum (epaulette shark) ORGANISM Hemiscyllium ocellatum Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Orectolobiformes; Hemiscylliidae; Hemiscyllium. REFERENCE 1 (bases 1 to 1963) AUTHORS Naylor,G., Burgess,S., Fedrigo,O., Schartl,M., Currie,P., Tulenko,F., Balacco,J., Mountcastle,J., Haase,B., Tracey,A., Sims,Y., Howe,K., Mullikin,J. and Jarvis,E.D. TITLE Hemiscyllium ocellatum (epaulette shark) genome, sHemOce1, paternal + X haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 1963) AUTHORS Naylor,G., Burgess,S., Fedrigo,O., Schartl,M., Currie,P., Tulenko,F., Balacco,J., Mountcastle,J., Haase,B., Tracey,A., Sims,Y., Howe,K., Mullikin,J. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (31-OCT-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Hemiscyllium ocellatum whole genome shotgun (WGS) project has the project accession JAJGRY000000000. This version of the project (01) has the accession number JAJGRY010000000, and consists of sequences JAJGRY010000001-JAJGRY010001963. ##Genome-Assembly-Data-START## Assembly Date :: 28-MAY-2021 Assembly Method :: TrioCanu v. 2.1; purge_dups v. 1.2.5; Scaff 10x v. 4.2; Bionano Solve v. 3.6.1_11162020; Salsa2 HiC v. 2.2; variantCaller v. 2.3.3; Longranger Align v. 2.2.2; Freebayes v. 1.3; gEVAL manual curation v. 2021-05-28; VGP Pipeline v. 1.6 Assembly Name :: sHemOce1.pat.X.cur. Diploid :: Principal Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 148.57x Sequencing Technology :: PacBio Sequel II CLR; Illumina NovaSeq; Bionano Genomics DLS; Arima Genomics Hi-C v1 ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1963 /organism="Hemiscyllium ocellatum" /mol_type="genomic DNA" /isolate="sHemOce1" /specimen_voucher="Juvenile #1654" /db_xref="taxon:170820" /sex="male" /tissue_type="spleen" /dev_stage="juvenile" /country="Australia: Clayton, Melbourne, Victoria" /lat_lon="37.9105 S 145.1293 E" /collection_date="2019-01-02" /collected_by="Frank Tulenko" WGS JAJGRY010000001-JAJGRY010001963 WGS_SCAFLD CM036659-CM036712 WGS_SCAFLD CM036752 // LOCUS JAJGRG010000000 1476 rc DNA linear VRT 05-NOV-2021 DEFINITION Tautogolabrus adspersus isolate fTauAds1, whole genome shotgun sequencing project. ACCESSION JAJGRG000000000 VERSION JAJGRG000000000.1 DBLINK BioProject: PRJNA774879 BioSample: SAMN22589422 KEYWORDS WGS. SOURCE Tautogolabrus adspersus (cunner) ORGANISM Tautogolabrus adspersus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Labriformes; Labridae; Tautogolabrus. REFERENCE 1 (bases 1 to 1476) AUTHORS Eindfelt,T., Jue,N., Young,H., Formenti,G., Balacco,J., Mountcastle,J., Collins,J., Sims,Y., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Tautogolabrus adspersus (cunner) genome, fTauAds1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 1476) AUTHORS Eindfelt,T., Jue,N., Young,H., Formenti,G., Balacco,J., Mountcastle,J., Collins,J., Sims,Y., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (31-OCT-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Tautogolabrus adspersus whole genome shotgun (WGS) project has the project accession JAJGRG000000000. This version of the project (01) has the accession number JAJGRG010000000, and consists of sequences JAJGRG010000001-JAJGRG010001476. ##Genome-Assembly-Data-START## Assembly Date :: 18-OCT-2021 Assembly Method :: FALCON v. 2018.31.08-03.06; FALCON unzip v. SMRTLink8, pbalign:0.3.2,; purge_dups v. 1.2.5; scaff10X v. 4.1.0; Bionano Solve DLS v. 3.4_06042019a; Arrow polishing and gap filling v. pbgcpp:1.9.0.1; Longranger Align v. 2.2.2; Deepvariant v. 1.1.0 Assembly Name :: fTauAds1.alt.cur Diploid :: Alternate Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 103.79x Sequencing Technology :: PacBio Sequel II CLR; 10X Gemonics linked reads; Bionano Genomics DLS; Arima Genomics Hi-C v1 ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1476 /organism="Tautogolabrus adspersus" /mol_type="genomic DNA" /isolate="fTauAds1" /db_xref="taxon:34787" /sex="male" /tissue_type="muscle" /dev_stage="adult" /country="Canada: Alderney Landing, Halifax" /lat_lon="44.66 N 63.57 W" /collection_date="2019-08-12" /collected_by="Tony Einfeldt" WGS JAJGRG010000001-JAJGRG010001476 // LOCUS JAJGRF010000000 64 rc DNA linear VRT 05-NOV-2021 DEFINITION Tautogolabrus adspersus isolate fTauAds1, whole genome shotgun sequencing project. ACCESSION JAJGRF000000000 VERSION JAJGRF000000000.1 DBLINK BioProject: PRJNA774878 BioSample: SAMN22589422 KEYWORDS WGS. SOURCE Tautogolabrus adspersus (cunner) ORGANISM Tautogolabrus adspersus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Labriformes; Labridae; Tautogolabrus. REFERENCE 1 (bases 1 to 64) AUTHORS Eindfelt,T., Jue,N., Young,H., Formenti,G., Balacco,J., Mountcastle,J., Collins,J., Sims,Y., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Tautogolabrus adspersus (cunner) genome, fTauAds1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 64) AUTHORS Eindfelt,T., Jue,N., Young,H., Formenti,G., Balacco,J., Mountcastle,J., Collins,J., Sims,Y., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (31-OCT-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Tautogolabrus adspersus whole genome shotgun (WGS) project has the project accession JAJGRF000000000. This version of the project (01) has the accession number JAJGRF010000000, and consists of sequences JAJGRF010000001-JAJGRF010000064. ##Genome-Assembly-Data-START## Assembly Date :: 18-OCT-2021 Assembly Method :: FALCON v. 2018.31.08-03.06; FALCON unzip v. SMRTLink8, pbalign:0.3.2,; purge_dups v. 1.2.5; scaff10X v. 4.1.0; Bionano Solve DLS v. 3.4_06042019a; Arrow polishing and gap filling v. pbgcpp:1.9.0.1; Longranger Align v. 2.2.2; Deepvariant v. 1.1.0 Assembly Name :: fTauAds1.pri.cur Diploid :: Principal Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 103.79x Sequencing Technology :: PacBio Sequel II CLR; 10X Gemonics linked reads; Bionano Genomics DLS; Arima Genomics Hi-C v1 ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..64 /organism="Tautogolabrus adspersus" /mol_type="genomic DNA" /isolate="fTauAds1" /db_xref="taxon:34787" /sex="male" /tissue_type="muscle" /dev_stage="adult" /country="Canada: Alderney Landing, Halifax" /lat_lon="44.66 N 63.57 W" /collection_date="2019-08-12" /collected_by="Tony Einfeldt" WGS JAJGRF010000001-JAJGRF010000064 WGS_SCAFLD CM036534-CM036557 WGS_SCAFLD CM036584 // LOCUS JAJGSU010000000 1535 rc DNA linear VRT 05-NOV-2021 DEFINITION Trogon surrucura isolate bTroSur1, whole genome shotgun sequencing project. ACCESSION JAJGSU000000000 VERSION JAJGSU000000000.1 DBLINK BioProject: PRJNA774296 BioSample: SAMN22550082 KEYWORDS WGS. SOURCE Trogon surrucura (Suruca trogon) ORGANISM Trogon surrucura Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Trogoniformes; Trogonidae; Trogon. REFERENCE 1 (bases 1 to 1535) AUTHORS Gilbert,M.T.P., Banin,D.A., Mountcastle,J., Balacco,J.R., Formenti,G., Tracey,A., Pointon,D.-L., Howe,K., Graves,G., Fedrigo,O. and Jarvis,E.D. TITLE Trogon surrucura (Surucua trogon) genome, bTroSur1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 1535) AUTHORS Gilbert,M.T.P., Banin,D.A., Mountcastle,J., Balacco,J.R., Formenti,G., Tracey,A., Pointon,D.-L., Howe,K., Graves,G., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (29-OCT-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Trogon surrucura whole genome shotgun (WGS) project has the project accession JAJGSU000000000. This version of the project (01) has the accession number JAJGSU010000000, and consists of sequences JAJGSU010000001-JAJGSU010001535. ##Genome-Assembly-Data-START## Assembly Date :: 25-MAY-2021 Assembly Method :: FALCON v. 2018.31.08-03.06; FALCON unzip v. 7.0.1.66975; purge_dups v. 1.2.5; scaff10X v. 4.1.0; Bionano solve v. 3.4.0; Salsa2 v. 2.2; Arrow polishing pbcpp v. 1.9.0.1; Longranger Align v. 2.2.2; Deep variant polishing v. 1.1.0; gEVAL manual curation v. 2021-09-24; VGP pipeline v. 1.7 Assembly Name :: bTroSur1.alt.cur Diploid :: Alternate Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 78.0x Sequencing Technology :: PacBio Sequel CLR; Illumina NovaSeq; Bionano Genomics Saphyr DLS; Arima Genomics Hi-C v1 ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1535 /organism="Trogon surrucura" /mol_type="genomic DNA" /isolate="bTroSur1" /specimen_voucher="USNM 620787" /bio_material="B05987" /db_xref="taxon:297711" /sex="female" /tissue_type="heart, muscle, liver" /dev_stage="adult" /country="Argentina: Posadas, Misiones" /lat_lon="26.955278 S 55.087778 W" /collection_date="1995-10-29" /collected_by="D. A. Banin" WGS JAJGSU010000001-JAJGSU010001535 // LOCUS JAJGQX010000000 2405 rc DNA linear VRT 05-NOV-2021 DEFINITION Hemiprocne comata isolate bHemCom1, whole genome shotgun sequencing project. ACCESSION JAJGQX000000000 VERSION JAJGQX000000000.1 DBLINK BioProject: PRJNA774830 BioSample: SAMN22588383 KEYWORDS WGS. SOURCE Hemiprocne comata ORGANISM Hemiprocne comata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Caprimulgimorphae; Apodiformes; Apodidae; Hemiprocninae; Hemiprocne. REFERENCE 1 (bases 1 to 2405) AUTHORS Gilbert,M.T.P., Gaige,J., Mountcastle,J., Formenti,G., Phelan,S., Sims,Y., Ross,C., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Hemiprocne comata (whiskered treeswift) genome, bHemCom1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 2405) AUTHORS Gilbert,M.T.P., Gaige,J., Mountcastle,J., Formenti,G., Phelan,S., Sims,Y., Ross,C., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (29-OCT-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Hemiprocne comata whole genome shotgun (WGS) project has the project accession JAJGQX000000000. This version of the project (01) has the accession number JAJGQX010000000, and consists of sequences JAJGQX010000001-JAJGQX010002405. ##Genome-Assembly-Data-START## Assembly Date :: 24-SEP-2021 Assembly Method :: FALCON v. 2018.31.08-03.06; FALCON unzip v. 7.0.1.66975; purge_dups v. 1.2.5; scaff10X v. 4.1.0; Bionano solve v. 3.4.0; Salsa2 v. 2.2; Arrow polishing pbcpp v. 1.9.0.1; Longranger Align v. 2.2.2; Deep variant polishing v. 1.1.0; gEVAL manual curation v. 2021-09-24; VGP pipeline v. 1.7 Assembly Name :: bHemCom1.alt.cur Diploid :: Alternate Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 80.12x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Bionano Genomics Saphyre DLS; Arima Genomics Hi-C v1 ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..2405 /organism="Hemiprocne comata" /mol_type="genomic DNA" /isolate="bHemCom1" /specimen_voucher="USNM 607338" /bio_material="B03790" /db_xref="taxon:243314" /sex="female" /tissue_type="heart, muscle, liver" /dev_stage="adult" /country="Philippines: Cagayan, Luzon Island (Barrio Via Sitio Hot Springs Baggao Mun.)" /lat_lon="17.85 N 121.98 E" /collection_date="1989-05-10" /collected_by="C. A. Ross" WGS JAJGQX010000001-JAJGQX010002405 // LOCUS JAJGSS010000000 749 rc DNA linear VRT 05-NOV-2021 DEFINITION Theristicus caerulescens isolate bTheCae1, whole genome shotgun sequencing project. ACCESSION JAJGSS000000000 VERSION JAJGSS000000000.1 DBLINK BioProject: PRJNA774321 BioSample: SAMN22550094 KEYWORDS WGS. SOURCE Theristicus caerulescens (plumbeous ibis) ORGANISM Theristicus caerulescens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Pelecaniformes; Threskiornithidae; Theristicus. REFERENCE 1 (bases 1 to 749) AUTHORS Gilbert,M.T.P., Milensky,C., Mountcastle,J., Balacco,J., Formenti,G., Pelan,S., Sims,Y., Fedrigo,O. and Jarvis,E.D. TITLE Theristicus caerulescens (plumbeous ibis) genome, bTheCae1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 749) AUTHORS Gilbert,M.T.P., Milensky,C., Mountcastle,J., Balacco,J., Formenti,G., Pelan,S., Sims,Y., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (29-OCT-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Theristicus caerulescens whole genome shotgun (WGS) project has the project accession JAJGSS000000000. This version of the project (01) has the accession number JAJGSS010000000, and consists of sequences JAJGSS010000001-JAJGSS010000749. ##Genome-Assembly-Data-START## Assembly Date :: 25-MAY-2021 Assembly Method :: FALCON v. 2018.31.08-03.06; FALCON unzip v. 7.0.1.66975; purge_dups v. 1.2.5; scaff10X v. 4.1.0; Bionano solve v. 3.4.0; Salsa2 v. 2.2; Arrow polishing pbcpp v. 1.9.0.1; Longranger Align v. 2.2.2; Deep variant polishing v. 1.1.0; gEVAL manual curation v. 2021-05-25; VGP pipeline v. 1.7 Assembly Name :: bTheCae1.alt.cur Diploid :: Alternate Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 123.5x Sequencing Technology :: PacBio Sequel CLR; Illumina NovaSeq; Bionano Genomics Saphyr DLS; Arima Genomics Hi-C v1 ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..749 /organism="Theristicus caerulescens" /mol_type="genomic DNA" /isolate="bTheCae1" /specimen_voucher="USNM 636095" /bio_material="B20749" /db_xref="taxon:1118847" /sex="female" /tissue_type="heart, muscle, liver" /dev_stage="juvenile chick" /country="Uruguay: Rocha" /lat_lon="33.741944 S 53.746111 W" /collection_date="2005-10-26" /collected_by="C. M. Milensky" WGS JAJGSS010000001-JAJGSS010000749 // LOCUS JAJGST010000000 182 rc DNA linear VRT 05-NOV-2021 DEFINITION Trogon surrucura isolate bTroSur1, whole genome shotgun sequencing project. ACCESSION JAJGST000000000 VERSION JAJGST000000000.1 DBLINK BioProject: PRJNA774295 BioSample: SAMN22550082 KEYWORDS WGS. SOURCE Trogon surrucura (Suruca trogon) ORGANISM Trogon surrucura Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Trogoniformes; Trogonidae; Trogon. REFERENCE 1 (bases 1 to 182) AUTHORS Gilbert,M.T.P., Banin,D.A., Mountcastle,J., Balacco,J.R., Formenti,G., Tracey,A., Pointon,D.-L., Howe,K., Graves,G., Fedrigo,O. and Jarvis,E.D. TITLE Trogon surrucura (Surucua trogon) genome, bTroSur1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 182) AUTHORS Gilbert,M.T.P., Banin,D.A., Mountcastle,J., Balacco,J.R., Formenti,G., Tracey,A., Pointon,D.-L., Howe,K., Graves,G., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (29-OCT-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Trogon surrucura whole genome shotgun (WGS) project has the project accession JAJGST000000000. This version of the project (01) has the accession number JAJGST010000000, and consists of sequences JAJGST010000001-JAJGST010000182. ##Genome-Assembly-Data-START## Assembly Date :: 25-MAY-2021 Assembly Method :: FALCON v. 2018.31.08-03.06; FALCON-Unzip v. 7.0.1.66975; purge_dups v. 1.2.5; scaff10X v. 4.1.0; Bionano solve v. 3.4.0; Salsa2 v. 2.2; Arrow polishing pbcpp v. 1.9.0.1; Longranger Align v. 2.2.2; Deep variant polishing v. 1.1.0; gEVAL manual curation v. 2021-05-25; VGP pipeline v. 1.7 Assembly Name :: bTroSur1.pri.cur Diploid :: Principal Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 78.0x Sequencing Technology :: PacBio Sequel CLR; Illumina NovaSeq; Bionano Genomics Saphyr DLS; Arima Genomics Hi-C ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..182 /organism="Trogon surrucura" /mol_type="genomic DNA" /isolate="bTroSur1" /specimen_voucher="USNM 620787" /bio_material="B05987" /db_xref="taxon:297711" /sex="female" /tissue_type="heart, muscle, liver" /dev_stage="adult" /country="Argentina: Posadas, Misiones" /lat_lon="26.955278 S 55.087778 W" /collection_date="1995-10-29" /collected_by="D. A. Banin" WGS JAJGST010000001-JAJGST010000182 WGS_SCAFLD CM036617-CM036658 WGS_SCAFLD CM036751 // LOCUS JAJGQW010000000 146 rc DNA linear VRT 05-NOV-2021 DEFINITION Hemiprocne comata isolate bHemCom1, whole genome shotgun sequencing project. ACCESSION JAJGQW000000000 VERSION JAJGQW000000000.1 DBLINK BioProject: PRJNA774831 BioSample: SAMN22588383 KEYWORDS WGS. SOURCE Hemiprocne comata ORGANISM Hemiprocne comata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Caprimulgimorphae; Apodiformes; Apodidae; Hemiprocninae; Hemiprocne. REFERENCE 1 (bases 1 to 146) AUTHORS Gilbert,M.T.P., Gaige,J., Haase,B., Mountcastle,J., Formenti,G., Phelan,S., Sims,Y., Ross,C., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Hemiprocne comata (whiskered treeswift) genome, bHemCom1 JOURNAL Unpublished REFERENCE 2 (bases 1 to 146) AUTHORS Gilbert,M.T.P., Gaige,J., Haase,B., Mountcastle,J., Formenti,G., Phelan,S., Sims,Y., Ross,C., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (29-OCT-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Hemiprocne comata whole genome shotgun (WGS) project has the project accession JAJGQW000000000. This version of the project (01) has the accession number JAJGQW010000000, and consists of sequences JAJGQW010000001-JAJGQW010000146. ##Genome-Assembly-Data-START## Assembly Date :: 24-SEP-2021 Assembly Method :: FALCON v. 2018.31.08-03.06; FALCON unzip v. 7.0.1.66975; purge_dups v. 1.2.5; scaff10X v. 4.1.0; Bionano solve v. 3.4.0; Salsa2 v. 2.2; Arrow polishing pbcpp v. 1.9.0.1; Longranger Align v. 2.2.2; Deepvariant polishing v. 1.1.0; gEVAL manual curation v. 2021-09-24; VGP pipeline v. 1.7 Assembly Name :: bHemCom1.pri.cur Diploid :: Principal Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 80.12x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Bionano Genomics DLS; Arima Genomics Hi-C ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..146 /organism="Hemiprocne comata" /mol_type="genomic DNA" /isolate="bHemCom1" /specimen_voucher="USNM 607338" /bio_material="B03790" /db_xref="taxon:243314" /sex="female" /tissue_type="heart, muscle, liver" /dev_stage="adult" /country="Philippines: Cagayan, Luzon Island (Barrio Via Sitio Hot Springs Baggao Mun.)" /lat_lon="17.85 N 121.98 E" /collection_date="1989-05-10" /collected_by="C. A. Ross" WGS JAJGQW010000001-JAJGQW010000146 WGS_SCAFLD CM036586-CM036616 WGS_SCAFLD CM036713 // LOCUS JAJGSR010000000 88 rc DNA linear VRT 05-NOV-2021 DEFINITION Theristicus caerulescens isolate bTheCae1, whole genome shotgun sequencing project. ACCESSION JAJGSR000000000 VERSION JAJGSR000000000.1 DBLINK BioProject: PRJNA774297 BioSample: SAMN22550094 KEYWORDS WGS. SOURCE Theristicus caerulescens (plumbeous ibis) ORGANISM Theristicus caerulescens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Pelecaniformes; Threskiornithidae; Theristicus. REFERENCE 1 (bases 1 to 88) AUTHORS Gilbert,M.T.P., Milensky,C., Mountcastle,J., Balacco,J., Formenti,G., Pelan,S., Sims,Y., Fedrigo,O. and Jarvis,E.D. TITLE Theristicus caerulescens (plumbeous ibis) genome, bTheCae1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 88) AUTHORS Gilbert,M.T.P., Milensky,C., Mountcastle,J., Balacco,J., Formenti,G., Pelan,S., Sims,Y., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (29-OCT-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Theristicus caerulescens whole genome shotgun (WGS) project has the project accession JAJGSR000000000. This version of the project (01) has the accession number JAJGSR010000000, and consists of sequences JAJGSR010000001-JAJGSR010000088. ##Genome-Assembly-Data-START## Assembly Date :: 25-MAY-2021 Assembly Method :: FALCON v. 2018.31.08-03.06; FALCON unzip v. 7.0.1.66975; purge_dups v. 1.2.5; scaff10X v. 4.1.0; Bionano solve v. 3.4.0; Salsa2 v. 2.2; Arrow polishing pbcpp v. 1.9.0.1; Longranger Align v. 2.2.2; Deep variant polishing v. 1.1.0; gEVAL manual curation v. 2021-05-25; VGP pipeline v. 1.7 Assembly Name :: bTheCae1.pri.cur Diploid :: Principal Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 123.5x Sequencing Technology :: PacBio Sequel CLR; Illumina NovaSeq; Bionano Genomics Saphyr DLS; Arima Genomics Hi-C v1 ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..88 /organism="Theristicus caerulescens" /mol_type="genomic DNA" /isolate="bTheCae1" /specimen_voucher="USNM 636095" /bio_material="B20749" /db_xref="taxon:1118847" /sex="female" /tissue_type="heart, muscle, liver" /dev_stage="juvenile chick" /country="Uruguay: Rocha" /lat_lon="33.741944 S 53.746111 W" /collection_date="2005-10-26" /collected_by="C. M. Milensky" WGS JAJGSR010000001-JAJGSR010000088 WGS_SCAFLD CM036558-CM036583 WGS_SCAFLD CM036585 // LOCUS JAJGSB010000000 508 rc DNA linear ROD 03-NOV-2021 DEFINITION Jaculus jaculus isolate mJacJac1, whole genome shotgun sequencing project. ACCESSION JAJGSB000000000 VERSION JAJGSB000000000.1 DBLINK BioProject: PRJNA773798 BioSample: SAMN20391724 KEYWORDS WGS. SOURCE Jaculus jaculus (lesser Egyptian jerboa) ORGANISM Jaculus jaculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Dipodoidea; Dipodidae; Dipodinae; Jaculus. REFERENCE 1 (bases 1 to 508) AUTHORS Copper,K., Brown,T., Winkler,S., Tracey,A., Sims,Y., Howe,K., Fedrigo,O., Jarvis,E.D. and Myers,G. TITLE Jaculus jaculus (Lesser Egyptian jerboa) genome, mJacJac1, paternal haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 508) AUTHORS Copper,K., Brown,T., Winkler,S., Tracey,A., Sims,Y., Howe,K., Fedrigo,O., Jarvis,E.D. and Myers,G. TITLE Direct Submission JOURNAL Submitted (01-NOV-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Jaculus jaculus whole genome shotgun (WGS) project has the project accession JAJGSB000000000. This version of the project (01) has the accession number JAJGSB010000000, and consists of sequences JAJGSB010000001-JAJGSB010000508. ##Genome-Assembly-Data-START## Assembly Date :: 2021 Assembly Method :: Trio HiCanu v. 2.1; purge_dups v. 1.2.3; Scaff10x v. 4.2; Bionano Solve v. 3.5.1; bwa v. 0.7.17; gcpp v. 1.9.0; Longranger Align v. 2.2.2; Freebayes v. 1.3.2; gEVAL manual curation v. 2021-05--07 Assembly Name :: mJacJac1.pat.decon Diploid :: Alternate Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 40.0x Sequencing Technology :: PacBio Sequel II CLR 101X; 10X Gemonics linked reads 78X; Bionano Genomics DLS 182X; Arima Genomics Hi-C v1 60X ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..508 /organism="Jaculus jaculus" /mol_type="genomic DNA" /isolate="mJacJac1" /db_xref="taxon:51337" /sex="male" /tissue_type="liver, spleen" /dev_stage="adult" /country="USA: San Diego" /lat_lon="32.72 N 117.17 W" /collection_date="2021-06-15" /collected_by="Kimberly Cooper" WGS JAJGSB010000001-JAJGSB010000508 // LOCUS JAJGSA010000000 159 rc DNA linear ROD 04-NOV-2021 DEFINITION Jaculus jaculus isolate mJacJac1, whole genome shotgun sequencing project. ACCESSION JAJGSA000000000 VERSION JAJGSA000000000.1 DBLINK BioProject: PRJNA773797 BioSample: SAMN20391724 KEYWORDS WGS. SOURCE Jaculus jaculus (lesser Egyptian jerboa) ORGANISM Jaculus jaculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Dipodoidea; Dipodidae; Dipodinae; Jaculus. REFERENCE 1 (bases 1 to 159) AUTHORS Cooper,K., Brown,T., Winkler,S., Tracey,A., Sims,Y., Howe,K., Fedrigo,O., Jarvis,E.D. and Myers,G. TITLE Jaculus jaculus (Lesser Egyptian jerboa) genome, mJacJac1, maternal + Y haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 159) AUTHORS Cooper,K., Brown,T., Winkler,S., Tracey,A., Sims,Y., Howe,K., Fedrigo,O., Jarvis,E.D. and Myers,G. TITLE Direct Submission JOURNAL Submitted (01-NOV-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Jaculus jaculus whole genome shotgun (WGS) project has the project accession JAJGSA000000000. This version of the project (01) has the accession number JAJGSA010000000, and consists of sequences JAJGSA010000001-JAJGSA010000159. ##Genome-Assembly-Data-START## Assembly Date :: 2021 Assembly Method :: Trio HiCanu v. 2.1; purge_dups v. 1.2.3; Scaff10x v. 4.2; Bionano Solve v. 3.5.1; bwa v. 0.7.17; gcpp v. 1.9.0; Longranger Align v. 2.2.2; Freebayes v. 1.3.2; gEVAL manual curation v. 2021-05--07 Assembly Name :: mJacJac1.mat.Y.cur Diploid :: Principal Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 61.0x Sequencing Technology :: PacBio Sequel II CLR 101X; 10X Gemonics linked reads 78X; Bionano Genomics DLS 182X; Arima Genomics Hi-C v1 60X ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..159 /organism="Jaculus jaculus" /mol_type="genomic DNA" /isolate="mJacJac1" /db_xref="taxon:51337" /sex="male" /tissue_type="liver, spleen" /dev_stage="adult" /country="USA: San Diego" /lat_lon="32.72 N 117.17 W" /collection_date="2021-06-15" /collected_by="Kimberly Cooper" WGS JAJGSA010000001-JAJGSA010000159 WGS_SCAFLD CM036389-CM036413 // LOCUS JAJGRB010000000 7527 rc DNA linear MAM 03-NOV-2021 DEFINITION Rhinolophus sinicus isolate mRhiSin1, whole genome shotgun sequencing project. ACCESSION JAJGRB000000000 VERSION JAJGRB000000000.1 DBLINK BioProject: PRJNA776468 BioSample: SAMN22787411 KEYWORDS WGS. SOURCE Rhinolophus sinicus (Chinese rufous horseshoe bat) ORGANISM Rhinolophus sinicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Rhinolophidae; Rhinolophinae; Rhinolophus. REFERENCE 1 (bases 1 to 7527) AUTHORS Lu,J., Gao,D., Hu,Y., Huang,J., Collins,J., Sims,Y., Zhang,L., He,X., Liu,J., Fedrigo,O. and Jarvis,E.D. TITLE Rhinolophus sinicus (Chinese rufous horseshoe bat) genome, mRhiSin1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 7527) AUTHORS Lu,J., Gao,D., Hu,Y., Huang,J., Collins,J., Sims,Y., Zhang,L., He,X., Liu,J., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (30-OCT-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Rhinolophus sinicus whole genome shotgun (WGS) project has the project accession JAJGRB000000000. This version of the project (01) has the accession number JAJGRB010000000, and consists of sequences JAJGRB010000001-JAJGRB010007527. ##Genome-Assembly-Data-START## Assembly Date :: 20-SEP-2021 Assembly Method :: HiFiasm v. 0.12-r304; purge_dups v. 1.2.5; Bionano Solve v. 3.6.1_11162020; Salsa v. 2.2; gEVAL manual curation v. 2021--09-20; VGP pipeline v. 2.0 Assembly Name :: mRhiSin1.alt.cur Diploid :: Alternate Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 30.71x Sequencing Technology :: PacBio Sequel II HiFi; Bionano Genomics DLS; Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..7527 /organism="Rhinolophus sinicus" /mol_type="genomic DNA" /isolate="mRhiSin1" /db_xref="taxon:89399" /sex="female" /tissue_type="muscle" /dev_stage="adult" /country="China: Conghua, Guangzhou" /lat_lon="23.737583 N 113.842219 E" /collection_date="2020-02-13" /collected_by="Libiao Zhang" WGS JAJGRB010000001-JAJGRB010007527 // LOCUS JAJGSZ010000000 2762 rc DNA linear VRT 03-NOV-2021 DEFINITION Corvus hawaiiensis isolate bCorHaw1, whole genome shotgun sequencing project. ACCESSION JAJGSZ000000000 VERSION JAJGSZ000000000.1 DBLINK BioProject: PRJNA774316 BioSample: SAMN22550278 KEYWORDS WGS. SOURCE Corvus hawaiiensis (hawaiian crow) ORGANISM Corvus hawaiiensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Corvidae; Corvus. REFERENCE 1 (bases 1 to 2762) AUTHORS Grosser,S., Sutton,J., Masuda,B., Datlof,E., Ryder,O., Grueber,C., Formenti,G., Tracey,A., Pointon,D.-L., Wood,J., Balacco,J., Mountcastle,J., Fedrigo,O., Jarvis,E.D. and Robertson,B. TITLE Corvus hawaiiensis (Hawaiian crow) genome, bCorHaw1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 2762) AUTHORS Grosser,S., Sutton,J., Masuda,B., Datlof,E., Ryder,O., Grueber,C., Formenti,G., Tracey,A., Pointon,D.-L., Wood,J., Balacco,J., Mountcastle,J., Fedrigo,O., Jarvis,E.D. and Robertson,B. TITLE Direct Submission JOURNAL Submitted (01-NOV-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Corvus hawaiiensis whole genome shotgun (WGS) project has the project accession JAJGSZ000000000. This version of the project (01) has the accession number JAJGSZ010000000, and consists of sequences JAJGSZ010000001-JAJGSZ010002762. ##Genome-Assembly-Data-START## Assembly Date :: 20-SEP-2021 Assembly Method :: HiFiasm v. 0.15.4+galaxy; purge_dups v. 1.2.5+galaxy3; Bionano Solve v. 3.6.1+galaxy2; Salsa v. 2.3+galaxy0; gEVAL manual curation v. 2021-09-20; VGP pipeline v. 2.0 Assembly Name :: bCorHaw1.alt.cur Diploid :: Alternate Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 29.61x Sequencing Technology :: PacBio Sequel II HiFi; Illumina NovaSeq; Bionano Genomics DLS; Arima Genomics Hi-C v2 ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..2762 /organism="Corvus hawaiiensis" /mol_type="genomic DNA" /isolate="bCorHaw1" /db_xref="taxon:134902" /sex="female" /tissue_type="blood" /dev_stage="adult" /country="USA: University of Hawaii at Manoa" /lat_lon="21.297467 N 157.818261 W" /collection_date="2020-08-08" /collected_by="Bryce Masuda" WGS JAJGSZ010000001-JAJGSZ010002762 // LOCUS JAJGQZ010000000 1697 rc DNA linear VRT 03-NOV-2021 DEFINITION Apus apus isolate bApuApu2, whole genome shotgun sequencing project. ACCESSION JAJGQZ000000000 VERSION JAJGQZ000000000.1 DBLINK BioProject: PRJNA776337 BioSample: SAMN22785356 KEYWORDS WGS. SOURCE Apus apus (common swift) ORGANISM Apus apus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Caprimulgimorphae; Apodiformes; Apodidae; Apodinae; Apus. REFERENCE 1 (bases 1 to 1697) AUTHORS Hiller,M., Baldwin,M.W., Winkler,S., Ballerstaedt,N., Osipova,E., Sadanandan,K., Ko,M.-C., Sackton,T., Brown,T.F., Pippel,M., Tracey,A., Sims,Y., Fedrigo,O. and Jarvis,E.D. TITLE Apus apus (common swift) genome, bApuApu2, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 1697) AUTHORS Hiller,M., Baldwin,M.W., Winkler,S., Ballerstaedt,N., Osipova,E., Sadanandan,K., Ko,M.-C., Sackton,T., Brown,T.F., Pippel,M., Tracey,A., Sims,Y., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (29-OCT-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Apus apus whole genome shotgun (WGS) project has the project accession JAJGQZ000000000. This version of the project (01) has the accession number JAJGQZ010000000, and consists of sequences JAJGQZ010000001-JAJGQZ010001697. ##Genome-Assembly-Data-START## Assembly Date :: 17-JUN-2021 Assembly Method :: FALCON-kit v. 1.8.1; FALCON-Unzip v. 1.3.7; purge-dups v. 0.0.3; Longranger v. 2.2.2; scaff10X v. 4.2; Bionano solve v. 3.5.1; Salsa2 v. 2.2.0; dentist v. 1.0.0; Freebays v. 1.3.2; gEVAL manual curation v. 2021-06-17 Assembly Name :: bApuApu2.alt.cur Diploid :: Alternate Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 103.36x Sequencing Technology :: PacBio Sequel I CLR; Bionano Genomics DLS; Arima Genomics Hi-C; 10X Genomics linked reads ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1697 /organism="Apus apus" /mol_type="genomic DNA" /isolate="bApuApu2" /db_xref="taxon:8895" /sex="female" /tissue_type="Blood, muscle" /dev_stage="adult" /country="Germany: Tutzing" /lat_lon="47.969789 N 11.297823 E" /collection_date="2017-06-07" /collected_by="Maude W. Baldwin" WGS JAJGQZ010000001-JAJGQZ010001697 // LOCUS JAJGSY010000000 187 rc DNA linear VRT 04-NOV-2021 DEFINITION Corvus hawaiiensis isolate bCorHaw1, whole genome shotgun sequencing project. ACCESSION JAJGSY000000000 VERSION JAJGSY000000000.1 DBLINK BioProject: PRJNA774314 BioSample: SAMN22550278 KEYWORDS WGS. SOURCE Corvus hawaiiensis (hawaiian crow) ORGANISM Corvus hawaiiensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Corvidae; Corvus. REFERENCE 1 (bases 1 to 187) AUTHORS Grosser,S., Sutton,J., Masuda,B., Datlof,E., Ryder,O., Grueber,C., Formenti,G., Tracey,A., Pointon,D.-L., Wood,J., Balacco,J., Mountcastle,J., Fedrigo,O., Jarvis,E.D. and Robertson,B. TITLE Corvus hawaiiensis (Hawaiian crow) genome, bCorHaw1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 187) AUTHORS Grosser,S., Sutton,J., Masuda,B., Datlof,E., Ryder,O., Grueber,C., Formenti,G., Tracey,A., Pointon,D.-L., Wood,J., Balacco,J., Mountcastle,J., Fedrigo,O., Jarvis,E.D. and Robertson,B. TITLE Direct Submission JOURNAL Submitted (30-OCT-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Corvus hawaiiensis whole genome shotgun (WGS) project has the project accession JAJGSY000000000. This version of the project (01) has the accession number JAJGSY010000000, and consists of sequences JAJGSY010000001-JAJGSY010000187. ##Genome-Assembly-Data-START## Assembly Date :: 20-SEP-2021 Assembly Method :: HiFiasm v. 0.15.4+galaxy; purge_dups v. 1.2.5+galaxy3; Bionano Solve v. 3.6.1+galaxy2; Salsa v. 2.3+galaxy0; gEVAL manual curation v. 2021-09-20; VGP pipeline v. 2.0 Assembly Name :: bCorHaw1.pri.cur Diploid :: Principal Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 29.61x Sequencing Technology :: PacBio Sequel II HiFi; Illumina NovaSeq; Bionano Genomics Saphyr DLS; Arima Genomics Hi-C v2 ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..187 /organism="Corvus hawaiiensis" /mol_type="genomic DNA" /isolate="bCorHaw1" /db_xref="taxon:134902" /sex="female" /tissue_type="blood" /dev_stage="adult" /country="USA: University of Hawaii at Manoa" /lat_lon="21.297467 N 157.818261 W" /collection_date="2020-08-08" /collected_by="Bryce Masuda" WGS JAJGSY010000001-JAJGSY010000187 WGS_SCAFLD CM036346-CM036388 // LOCUS JAJGRA010000000 69 rc DNA linear MAM 04-NOV-2021 DEFINITION Rhinolophus sinicus isolate mRhiSin1, whole genome shotgun sequencing project. ACCESSION JAJGRA000000000 VERSION JAJGRA000000000.1 DBLINK BioProject: PRJNA776471 BioSample: SAMN22787411 KEYWORDS WGS. SOURCE Rhinolophus sinicus (Chinese rufous horseshoe bat) ORGANISM Rhinolophus sinicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Rhinolophidae; Rhinolophinae; Rhinolophus. REFERENCE 1 (bases 1 to 69) AUTHORS Lu,J., Gao,D., Hu,Y., Huang,J., Collins,J., Sims,Y., Zhang,L., He,X., Liu,J., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Rhinolophus sinicus (Chinese rufous horseshoe bat) genome, mRhiSin1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 69) AUTHORS Lu,J., Gao,D., Hu,Y., Huang,J., Collins,J., Sims,Y., Zhang,L., He,X., Liu,J., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (30-OCT-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Rhinolophus sinicus whole genome shotgun (WGS) project has the project accession JAJGRA000000000. This version of the project (01) has the accession number JAJGRA010000000, and consists of sequences JAJGRA010000001-JAJGRA010000069. ##Genome-Assembly-Data-START## Assembly Date :: 20-SEP-2021 Assembly Method :: HiFiasm v. 0.12-r304; purge_dups v. 1.2.5; Bionano Solve v. 3.6.1_11162020; Salsa v. 2.2; gEVAL manual curation v. 2021--09-20; VGP pipeline v. 2.0 Assembly Name :: mRhiSin1.pri.cur Diploid :: Principal Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 30.71x Sequencing Technology :: PacBio Sequel II HiFi; Bionano Genomics DLS; Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..69 /organism="Rhinolophus sinicus" /mol_type="genomic DNA" /isolate="mRhiSin1" /db_xref="taxon:89399" /sex="female" /tissue_type="muscle" /dev_stage="adult" /country="China: Conghua, Guangzhou" /lat_lon="23.737583 N 113.842219 E" /collection_date="2020-02-13" /collected_by="Libiao Zhang" WGS JAJGRA010000001-JAJGRA010000069 WGS_SCAFLD CM036414-CM036431 // LOCUS JAJGPZ010000000 312 rc DNA linear PRI 03-NOV-2021 DEFINITION Lemur catta isolate mLemCat1, whole genome shotgun sequencing project. ACCESSION JAJGPZ000000000 VERSION JAJGPZ000000000.1 DBLINK BioProject: PRJNA561950 BioSample: SAMN12621102 KEYWORDS WGS. SOURCE Lemur catta (Ring-tailed lemur) ORGANISM Lemur catta Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Lemuridae; Lemur. REFERENCE 1 (bases 1 to 312) AUTHORS Marques,T., Balacco,J., Formenti,G., Palmada,M., Orkin,J., Kuderna,L., Mountcastle,J., Haase,B., Bertelsen,M., Gilbert,M.T.P., Sims,Y., Wood,J., Fedrigo,O. and Jarvis,E.D. TITLE Lemur catta (Ring-tailed lemur) genome, mLemCat1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 312) AUTHORS Marques,T., Balacco,J., Formenti,G., Palmada,M., Orkin,J., Kuderna,L., Mountcastle,J., Haase,B., Bertelsen,M., Gilbert,M.T.P., Sims,Y., Wood,J., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (23-OCT-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Lemur catta whole genome shotgun (WGS) project has the project accession JAJGPZ000000000. This version of the project (01) has the accession number JAJGPZ010000000, and consists of sequences JAJGPZ010000001-JAJGPZ010000312. ##Genome-Assembly-Data-START## Assembly Date :: 16-JUL-2021 Assembly Method :: hifiasm v. 0.12-r304; purge_dups v. 1.2.5; bionano_solve Solve v. 3.6.1; salsa2 v. v2.2; gEVAL manual curation v. 2021-07-16 Assembly Name :: mLemCat1.alt Diploid :: Alternate Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 20.81x Sequencing Technology :: Pacbio Sequel II CCS; 10X Genomics linked reads; Bionano Genomics DLS; Arima Genomics v1 Hi-C ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..312 /organism="Lemur catta" /mol_type="genomic DNA" /isolate="mLemCat1" /db_xref="taxon:9447" /sex="male" /tissue_type="spleen" /dev_stage="juvenile" /country="Denmark: Copenhagen Zoo" /lat_lon="55.67278 N 12.52139 E" /collection_date="2015-12-16" /collected_by="Mads Bertelsen" WGS JAJGPZ010000001-JAJGPZ010000312 // LOCUS JAJGPY010000000 185 rc DNA linear PRI 04-NOV-2021 DEFINITION Lemur catta isolate mLemCat1, whole genome shotgun sequencing project. ACCESSION JAJGPY000000000 VERSION JAJGPY000000000.1 DBLINK BioProject: PRJNA561949 BioSample: SAMN12621102 KEYWORDS WGS. SOURCE Lemur catta (Ring-tailed lemur) ORGANISM Lemur catta Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Lemuridae; Lemur. REFERENCE 1 (bases 1 to 185) AUTHORS Marques,T., Balacco,J., Formenti,G., Palmada,M., Orkin,J., Kuderna,L., Mountcastle,J., Haase,B., Bertelsen,M., Gilbert,M.T.P., Tracey,A., Sims,Y., Wood,J., Fedrigo,O. and Jarvis,E.D. TITLE Lemur catta (Ring-tailed lemur) genome, mLemCat1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 185) AUTHORS Marques,T., Balacco,J., Formenti,G., Palmada,M., Orkin,J., Kuderna,L., Mountcastle,J., Haase,B., Bertelsen,M., Gilbert,M.T.P., Tracey,A., Sims,Y., Wood,J., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (28-OCT-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Lemur catta whole genome shotgun (WGS) project has the project accession JAJGPY000000000. This version of the project (01) has the accession number JAJGPY010000000, and consists of sequences JAJGPY010000001-JAJGPY010000185. ##Genome-Assembly-Data-START## Assembly Date :: 16-JUL-2021 Assembly Method :: hifiasm v. 0.12-r304; purge_dups v. 1.2.5; bionano_solve v. Solve3.6.1_11162020; salsa2 v. v2.2; gEVAL manual curation v. 2021-07-16 Assembly Name :: mLemCat1.pri Diploid :: Principal Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 20.81x Sequencing Technology :: Pacbio Sequel II CCS; 10X Genomics linked reads; Bionano Genomics DLS; Arima Genomics v1 Hi-C ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..185 /organism="Lemur catta" /mol_type="genomic DNA" /isolate="mLemCat1" /db_xref="taxon:9447" /sex="male" /tissue_type="spleen" /dev_stage="juvenile" /country="Denmark: Copenhagen Zoo" /lat_lon="55.67278 N 12.52139 E" /collection_date="2015-12-16" /collected_by="Mads Bertelsen" WGS JAJGPY010000001-JAJGPY010000185 WGS_SCAFLD CM036472-CM036500 WGS_SCAFLD CM036502 // LOCUS JAJGQY010000000 109 rc DNA linear VRT 04-NOV-2021 DEFINITION Apus apus isolate bApuApu2, whole genome shotgun sequencing project. ACCESSION JAJGQY000000000 VERSION JAJGQY000000000.1 DBLINK BioProject: PRJNA776336 BioSample: SAMN22785356 KEYWORDS WGS. SOURCE Apus apus (common swift) ORGANISM Apus apus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Caprimulgimorphae; Apodiformes; Apodidae; Apodinae; Apus. REFERENCE 1 (bases 1 to 109) AUTHORS Hiller,M., Baldwin,M.W., Winkler,S., Ballerstaedt,N., Osipova,E., Sadanandan,K., Ko,M.-C., Sackton,T., Brown,T.F., Pippel,M., Tracey,A., Sims,Y., Fedrigo,O. and Jarvis,E.D. TITLE Apus apus (common swift) genome, bApuApu2, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 109) AUTHORS Hiller,M., Baldwin,M.W., Winkler,S., Ballerstaedt,N., Osipova,E., Sadanandan,K., Ko,M.-C., Sackton,T., Brown,T.F., Pippel,M., Tracey,A., Sims,Y., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (29-OCT-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Apus apus whole genome shotgun (WGS) project has the project accession JAJGQY000000000. This version of the project (01) has the accession number JAJGQY010000000, and consists of sequences JAJGQY010000001-JAJGQY010000109. ##Genome-Assembly-Data-START## Assembly Date :: 17-JUN-2021 Assembly Method :: FALCON-kit v. 1.8.1; FALCON-Unzip v. 1.3.7; purge-dups v. 0.0.3; Longranger v. 2.2.2; scaff10X v. 4.2; Bionano solve v. 3.5.1; Salsa2 v. 2.2.0; dentist v. 1.0.0; Freebays v. 1.3.2; gEVAL manual curation v. 2021-06-17 Assembly Name :: bApuApu2.pri.cur Diploid :: Principal Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 103.36x Sequencing Technology :: PacBio Sequel I CLR; Bionano Genomics DLS; Arima Genomics Hi-C; 10X Genomics linked reads ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..109 /organism="Apus apus" /mol_type="genomic DNA" /isolate="bApuApu2" /db_xref="taxon:8895" /sex="female" /tissue_type="Blood, muscle" /dev_stage="adult" /country="Germany: Tutzing" /lat_lon="47.969789 N 11.297823 E" /collection_date="2017-06-07" /collected_by="Maude W. Baldwin" WGS JAJGQY010000001-JAJGQY010000109 WGS_SCAFLD CM036503-CM036533 // LOCUS WPOB02000000 3096 rc DNA linear MAM 02-NOV-2021 DEFINITION Zalophus californianus isolate mZalCal1, whole genome shotgun sequencing project. ACCESSION WPOB00000000 VERSION WPOB00000000.2 DBLINK BioProject: PRJNA559674 BioSample: SAMN12368149 KEYWORDS WGS. SOURCE Zalophus californianus (California sea lion) ORGANISM Zalophus californianus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Otariidae; Zalophus. REFERENCE 1 (bases 1 to 3096) AUTHORS Peart,C.R., Williams,C., Pophaly,S.D., Neely,B.A., Gulland,F.M.D., Adams,D.J., Ng,B.L., Cheng,W., Goebel,M.E., Fedrigo,O., Haase,B., Mountcastle,J., Fungtammasan,A., Formenti,G., Collins,J., Wood,J., Sims,Y., Torrance,J., Tracey,A., Howe,K., Rhie,A., Hoffman,J.I., Johnson,J., Jarvis,E.D., Breen,M. and Wolf,J.B.W. TITLE Hi-C scaffolded short- and long-read genome assemblies of the California sea lion are broadly consistent for syntenic inference across 45 million years of evolution JOURNAL Mol Ecol Resour 21 (7), 2455-2470 (2021) PUBMED 34097816 REFERENCE 2 (bases 1 to 3096) AUTHORS Wolf,J., Fedrigo,O., Haase,B., Mountcastle,J., Fungtammasan,A., Formenti,G., Gulland,F., Mcclain,A., Peart,C., Tracey,A., Sims,Y., Howe,K., Rhie,A. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (29-NOV-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA REFERENCE 3 (bases 1 to 3096) AUTHORS Wolf,J., Fedrigo,O., Haase,B., Mountcastle,J., Fungtammasan,A., Formenti,G., Gulland,F., Mcclain,A., Peart,C., Tracey,A., Sims,Y., Howe,K., Rhie,A. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (31-MAY-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT On Jun 12, 2020 this sequence version replaced WPOB00000000.1. The Zalophus californianus whole genome shotgun (WGS) project has the project accession WPOB00000000. This version of the project (02) has the accession number WPOB02000000, and consists of sequences WPOB02000001-WPOB02003096. This assembly represents the alternate haplotype of the diploid genome Zalophus californianus. The principal haplotype sequences are in WGS project WPOA00000000. ##Genome-Assembly-Data-START## Assembly Date :: 13-MAR-2020 Assembly Method :: FALCON v. 2018.31.08-03.06; FALCON-Unzip v. 7.0.1.66975; purge_dups v. v1; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. SMRTLink7.0.1; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2020-03-13; VGP assembly pipeline individual v. 1.6 Assembly Name :: mZalCal1.alt.v2 Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 80.51x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..3096 /organism="Zalophus californianus" /mol_type="genomic DNA" /isolate="mZalCal1" /db_xref="taxon:9704" /sex="male" /tissue_type="blood" /country="USA: California" /lat_lon="37.858768 N 122.484010 W" /collection_date="07-Jul-2018" /collected_by="Frances Gulland and Jochen Wolf" WGS WPOB02000001-WPOB02003096 // LOCUS WPOA02000000 47 rc DNA linear MAM 02-NOV-2021 DEFINITION Zalophus californianus isolate mZalCal1, whole genome shotgun sequencing project. ACCESSION WPOA00000000 VERSION WPOA00000000.2 DBLINK BioProject: PRJNA559673 BioSample: SAMN12368149 KEYWORDS WGS. SOURCE Zalophus californianus (California sea lion) ORGANISM Zalophus californianus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Otariidae; Zalophus. REFERENCE 1 (bases 1 to 47) AUTHORS Peart,C.R., Williams,C., Pophaly,S.D., Neely,B.A., Gulland,F.M.D., Adams,D.J., Ng,B.L., Cheng,W., Goebel,M.E., Fedrigo,O., Haase,B., Mountcastle,J., Fungtammasan,A., Formenti,G., Collins,J., Wood,J., Sims,Y., Torrance,J., Tracey,A., Howe,K., Rhie,A., Hoffman,J.I., Johnson,J., Jarvis,E.D., Breen,M. and Wolf,J.B.W. TITLE Hi-C scaffolded short- and long-read genome assemblies of the California sea lion are broadly consistent for syntenic inference across 45 million years of evolution JOURNAL Mol Ecol Resour 21 (7), 2455-2470 (2021) PUBMED 34097816 REFERENCE 2 (bases 1 to 47) AUTHORS Wolf,J., Fedrigo,O., Haase,B., Mountcastle,J., Fungtammasan,A., Formenti,G., Gulland,F., Mcclain,A., Peart,C., Tracey,A., Sims,Y., Howe,K., Rhie,A. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (29-NOV-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA REFERENCE 3 (bases 1 to 47) AUTHORS Wolf,J., Fedrigo,O., Haase,B., Mountcastle,J., Fungtammasan,A., Formenti,G., Gulland,F., Mcclain,A., Peart,C., Tracey,A., Sims,Y., Howe,K., Rhie,A. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (05-JUN-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT On Jun 12, 2020 this sequence version replaced WPOA00000000.1. The Zalophus californianus whole genome shotgun (WGS) project has the project accession WPOA00000000. This version of the project (02) has the accession number WPOA02000000, and consists of sequences WPOA02000001-WPOA02000047. This assembly represents the principal haplotype of the diploid genome Zalophus californianus and includes the chromosomes. The alternate haplotype sequences are in WGS project WPOB00000000. ##Genome-Assembly-Data-START## Assembly Date :: 13-MAR-2020 Assembly Method :: FALCON v. 2018.31.08-03.06; FALCON-Unzip v. 7.0.1.66975; purge_dups v. v1; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. SMRTLink7.0.1; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2020-03-13; VGP assembly pipeline individual v. 1.6 Assembly Name :: mZalCal1.pri.v2 Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 80.51x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..47 /organism="Zalophus californianus" /mol_type="genomic DNA" /isolate="mZalCal1" /db_xref="taxon:9704" /sex="male" /tissue_type="blood" /country="USA: California" /lat_lon="37.858768 N 122.484010 W" /collection_date="07-Jul-2018" /collected_by="Frances Gulland and Jochen Wolf" WGS WPOA02000001-WPOA02000047 WGS_SCAFLD CM019802-CM019821 // LOCUS CAKJTE010000000 158 rc DNA linear INV 14-OCT-2021 DEFINITION Limnephilus lunatus, whole genome shotgun sequencing project. ACCESSION CAKJTE000000000 VERSION CAKJTE000000000.1 DBLINK BioProject: PRJEB48033 BioSample: SAMEA7521206 Sequence Read Archive: ERR6688475, ERR6688476, ERR6688477, ERR6688478, ERR6688479, ERR6688481, ERR6688482, ERR6688483, ERR6688484, ERR6907853, ERR6939235 KEYWORDS WGS. SOURCE Limnephilus lunatus ORGANISM Limnephilus lunatus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Trichoptera; Integripalpia; Plenitentoria; Limnephiloidea; Limnephilidae; Limnephilinae; Limnephilini; Limnephilus. REFERENCE 1 (bases 1 to 158) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (12-OCT-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Limnephilus lunatus whole genome shotgun (WGS) project has the project accession CAKJTE000000000. This version of the project (01) has the accession number CAKJTE010000000, and consists of sequences CAKJTE010000001-CAKJTE010000158. The assembly iiLimLuna2.1 is based on 36x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Inversions between haplotypes observed on chromosome 3 104.64-110.84mb, chromosome 11 2.56-20.55mb. FEATURES Location/Qualifiers source 1..158 /organism="Limnephilus lunatus" /mol_type="genomic DNA" /db_xref="taxon:1218281" WGS CAKJTE010000001-CAKJTE010000158 // LOCUS CAJHXC020000000 927 rc DNA linear INV 13-OCT-2021 DEFINITION Xestia xanthographa, whole genome shotgun sequencing project. ACCESSION CAJHXC000000000 VERSION CAJHXC000000000.2 DBLINK BioProject: PRJEB41958 BioSample: SAMEA7520195 KEYWORDS WGS. SOURCE Xestia xanthographa ORGANISM Xestia xanthographa Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Noctuinae; Noctuini; Xestia. REFERENCE 1 (bases 1 to 927) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (14-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 927) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (24-AUG-2021) SC, Wellcome Sanger Institute, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT On Oct 15, 2021 this sequence version replaced CAJHXC000000000.1. The Xestia xanthographa whole genome shotgun (WGS) project has the project accession CAJHXC000000000. This version of the project (02) has the accession number CAJHXC020000000, and consists of sequences CAJHXC020000001-CAJHXC020000927. The assembly ilXesXant1.2 is based on 27x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..927 /organism="Xestia xanthographa" /mol_type="genomic DNA" /db_xref="taxon:988049" WGS CAJHXC020000001-CAJHXC020000927 // LOCUS CAKJSY010000000 596 rc DNA linear INV 13-OCT-2021 DEFINITION Dryobotodes eremita, whole genome shotgun sequencing project. ACCESSION CAKJSY000000000 VERSION CAKJSY000000000.1 DBLINK BioProject: PRJEB48056 BioSample: SAMEA8603190 Sequence Read Archive: ERR6688524, ERR6688525, ERR6688526, ERR6688527, ERR6688528, ERR6808003 KEYWORDS WGS. SOURCE Dryobotodes eremita ORGANISM Dryobotodes eremita Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Dryobotodes. REFERENCE 1 (bases 1 to 596) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (11-OCT-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Dryobotodes eremita whole genome shotgun (WGS) project has the project accession CAKJSY000000000. This version of the project (01) has the accession number CAKJSY010000000, and consists of sequences CAKJSY010000001-CAKJSY010000596. The assembly ilDryErem1.1 is based on 28x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..596 /organism="Dryobotodes eremita" /mol_type="genomic DNA" /db_xref="taxon:988106" WGS CAKJSY010000001-CAKJSY010000596 // LOCUS CAKJSX010000000 341 rc DNA linear INV 13-OCT-2021 DEFINITION Orgyia antiqua, whole genome shotgun sequencing project. ACCESSION CAKJSX000000000 VERSION CAKJSX000000000.1 DBLINK BioProject: PRJEB47959 BioSample: SAMEA7524390 KEYWORDS WGS. SOURCE Orgyia antiqua (rusty tussock moth) ORGANISM Orgyia antiqua Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Erebidae; Lymantriinae; Orgyia. REFERENCE 1 (bases 1 to 341) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (06-OCT-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Orgyia antiqua whole genome shotgun (WGS) project has the project accession CAKJSX000000000. This version of the project (01) has the accession number CAKJSX010000000, and consists of sequences CAKJSX010000001-CAKJSX010000341. The assembly ilOrgAnti1.1 is based on 14x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..341 /organism="Orgyia antiqua" /mol_type="genomic DNA" /db_xref="taxon:335469" WGS CAKJSX010000001-CAKJSX010000341 // LOCUS CAKJTB010000000 2677 rc DNA linear INV 13-OCT-2021 DEFINITION Ichneumon xanthorius, whole genome shotgun sequencing project. ACCESSION CAKJTB000000000 VERSION CAKJTB000000000.1 DBLINK BioProject: PRJEB48053 BioSample: SAMEA7746465 Sequence Read Archive: ERR6688585, ERR6688586, ERR6688587, ERR6688588, ERR6688589, ERR6808013 KEYWORDS WGS. SOURCE Ichneumon xanthorius ORGANISM Ichneumon xanthorius Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Parasitoida; Ichneumonoidea; Ichneumonidae; Ichneumoninae; Ichneumon. REFERENCE 1 (bases 1 to 2677) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (11-OCT-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Ichneumon xanthorius whole genome shotgun (WGS) project has the project accession CAKJTB000000000. This version of the project (01) has the accession number CAKJTB010000000, and consists of sequences CAKJTB010000001-CAKJTB010002677. The assembly iyIchXant1.1 is based on 55x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. The orientation of chromosome 10 1.08-1.74mb cannot be determined from available data. FEATURES Location/Qualifiers source 1..2677 /organism="Ichneumon xanthorius" /mol_type="genomic DNA" /db_xref="taxon:2795680" WGS CAKJTB010000001-CAKJTB010002677 // LOCUS CAKJTD010000000 138 rc DNA linear INV 13-OCT-2021 DEFINITION Ichneumon xanthorius, whole genome shotgun sequencing project. ACCESSION CAKJTD000000000 VERSION CAKJTD000000000.1 DBLINK BioProject: PRJEB48052 BioSample: SAMEA7746465 Sequence Read Archive: ERR6688585, ERR6688586, ERR6688587, ERR6688588, ERR6688589, ERR6808013 KEYWORDS WGS. SOURCE Ichneumon xanthorius ORGANISM Ichneumon xanthorius Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Parasitoida; Ichneumonoidea; Ichneumonidae; Ichneumoninae; Ichneumon. REFERENCE 1 (bases 1 to 138) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (11-OCT-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Ichneumon xanthorius whole genome shotgun (WGS) project has the project accession CAKJTD000000000. This version of the project (01) has the accession number CAKJTD010000000, and consists of sequences CAKJTD010000001-CAKJTD010000138. The assembly iyIchXant1.1 is based on 55x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. The orientation of chromosome 10 1.08-1.74mb cannot be determined from available data. FEATURES Location/Qualifiers source 1..138 /organism="Ichneumon xanthorius" /mol_type="genomic DNA" /db_xref="taxon:2795680" WGS CAKJTD010000001-CAKJTD010000138 // LOCUS CAJYYF010000000 27 rc DNA linear INV 13-OCT-2021 DEFINITION Seladonia tumulorum, whole genome shotgun sequencing project. ACCESSION CAJYYF000000000 VERSION CAJYYF000000000.1 DBLINK BioProject: PRJEB47128 BioSample: SAMEA7746445 KEYWORDS WGS. SOURCE Seladonia tumulorum ORGANISM Seladonia tumulorum Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Halictidae; Halictinae; Halictini; Seladonia. REFERENCE 1 (bases 1 to 27) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (23-AUG-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Seladonia tumulorum whole genome shotgun (WGS) project has the project accession CAJYYF000000000. This version of the project (01) has the accession number CAJYYF010000000, and consists of sequences CAJYYF010000001-CAJYYF010000027. The assembly iySelTumu1.1 is based on 58x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. HiC associations between chromosome arms were very faint leaving some room for potentially missing joins. No karyotype was found, leaving a small amount of uncertainty over the final number of chromosome we identified. FEATURES Location/Qualifiers source 1..27 /organism="Seladonia tumulorum" /mol_type="genomic DNA" /db_xref="taxon:115100" WGS CAJYYF010000001-CAJYYF010000027 // LOCUS CAJYYH010000000 109 rc DNA linear INV 13-OCT-2021 DEFINITION Seladonia tumulorum, whole genome shotgun sequencing project. ACCESSION CAJYYH000000000 VERSION CAJYYH000000000.1 DBLINK BioProject: PRJEB47129 BioSample: SAMEA7746445 KEYWORDS WGS. SOURCE Seladonia tumulorum ORGANISM Seladonia tumulorum Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Halictidae; Halictinae; Halictini; Seladonia. REFERENCE 1 (bases 1 to 109) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (23-AUG-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Seladonia tumulorum whole genome shotgun (WGS) project has the project accession CAJYYH000000000. This version of the project (01) has the accession number CAJYYH010000000, and consists of sequences CAJYYH010000001-CAJYYH010000109. The assembly iySelTumu1.1 is based on 58x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. HiC associations between chromosome arms were very faint leaving some room for potentially missing joins. No karyotype was found, leaving a small amount of uncertainty over the final number of chromosome we identified. FEATURES Location/Qualifiers source 1..109 /organism="Seladonia tumulorum" /mol_type="genomic DNA" /db_xref="taxon:115100" WGS CAJYYH010000001-CAJYYH010000109 // LOCUS CAKJTC010000000 285 rc DNA linear INV 13-OCT-2021 DEFINITION Mimumesa dahlbomi, whole genome shotgun sequencing project. ACCESSION CAKJTC000000000 VERSION CAKJTC000000000.1 DBLINK BioProject: PRJEB48054 BioSample: SAMEA8603165 Sequence Read Archive: ERR6688575, ERR6688576, ERR6688577, ERR6688578, ERR6688579, ERR6808011 KEYWORDS WGS. SOURCE Mimumesa dahlbomi ORGANISM Mimumesa dahlbomi Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Spheciformes; Crabronidae; Pemphredoninae; Psenini; Mimumesa. REFERENCE 1 (bases 1 to 285) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (11-OCT-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Mimumesa dahlbomi whole genome shotgun (WGS) project has the project accession CAKJTC000000000. This version of the project (01) has the accession number CAKJTC010000000, and consists of sequences CAKJTC010000001-CAKJTC010000285. The assembly iyMimDahl1.1 is based on 52x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..285 /organism="Mimumesa dahlbomi" /mol_type="genomic DNA" /db_xref="taxon:2495085" WGS CAKJTC010000001-CAKJTC010000285 // LOCUS CAJYYI010000000 375 rc DNA linear INV 13-OCT-2021 DEFINITION Sphecodes monilicornis, whole genome shotgun sequencing project. ACCESSION CAJYYI000000000 VERSION CAJYYI000000000.1 DBLINK BioProject: PRJEB47131 BioSample: SAMEA7746755 KEYWORDS WGS. SOURCE Sphecodes monilicornis ORGANISM Sphecodes monilicornis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Halictidae; Halictinae; Sphecodini; Sphecodes. REFERENCE 1 (bases 1 to 375) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (23-AUG-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Sphecodes monilicornis whole genome shotgun (WGS) project has the project accession CAJYYI000000000. This version of the project (01) has the accession number CAJYYI010000000, and consists of sequences CAJYYI010000001-CAJYYI010000375. The assembly iySphMoni1.1 is based on 34x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..375 /organism="Sphecodes monilicornis" /mol_type="genomic DNA" /db_xref="taxon:1190790" WGS CAJYYI010000001-CAJYYI010000375 // LOCUS CAKJTF010000000 51 rc DNA linear INV 14-OCT-2021 DEFINITION Limnephilus lunatus, whole genome shotgun sequencing project. ACCESSION CAKJTF000000000 VERSION CAKJTF000000000.1 DBLINK BioProject: PRJEB48032 BioSample: SAMEA7521206 Sequence Read Archive: ERR6688475, ERR6688476, ERR6688477, ERR6688478, ERR6688479, ERR6688481, ERR6688482, ERR6688483, ERR6688484, ERR6907853, ERR6939235 KEYWORDS WGS. SOURCE Limnephilus lunatus ORGANISM Limnephilus lunatus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Trichoptera; Integripalpia; Plenitentoria; Limnephiloidea; Limnephilidae; Limnephilinae; Limnephilini; Limnephilus. REFERENCE 1 (bases 1 to 51) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (12-OCT-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Limnephilus lunatus whole genome shotgun (WGS) project has the project accession CAKJTF000000000. This version of the project (01) has the accession number CAKJTF010000000, and consists of sequences CAKJTF010000001-CAKJTF010000051. The assembly iiLimLuna2.1 is based on 36x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Inversions between haplotypes observed on chromosome 3 104.64-110.84mb, chromosome 11 2.56-20.55mb. FEATURES Location/Qualifiers source 1..51 /organism="Limnephilus lunatus" /mol_type="genomic DNA" /db_xref="taxon:1218281" WGS CAKJTF010000001-CAKJTF010000051 // LOCUS CAKJSZ010000000 35 rc DNA linear INV 13-OCT-2021 DEFINITION Dryobotodes eremita, whole genome shotgun sequencing project. ACCESSION CAKJSZ000000000 VERSION CAKJSZ000000000.1 DBLINK BioProject: PRJEB48057 BioSample: SAMEA8603190 Sequence Read Archive: ERR6688524, ERR6688525, ERR6688526, ERR6688527, ERR6688528, ERR6808003 KEYWORDS WGS. SOURCE Dryobotodes eremita ORGANISM Dryobotodes eremita Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Dryobotodes. REFERENCE 1 (bases 1 to 35) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (11-OCT-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Dryobotodes eremita whole genome shotgun (WGS) project has the project accession CAKJSZ000000000. This version of the project (01) has the accession number CAKJSZ010000000, and consists of sequences CAKJSZ010000001-CAKJSZ010000035. The assembly ilDryErem1.1 is based on 28x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..35 /organism="Dryobotodes eremita" /mol_type="genomic DNA" /db_xref="taxon:988106" WGS CAKJSZ010000001-CAKJSZ010000035 // LOCUS CAKJTA010000000 59 rc DNA linear INV 13-OCT-2021 DEFINITION Mimumesa dahlbomi, whole genome shotgun sequencing project. ACCESSION CAKJTA000000000 VERSION CAKJTA000000000.1 DBLINK BioProject: PRJEB48055 BioSample: SAMEA8603165 Sequence Read Archive: ERR6688575, ERR6688576, ERR6688577, ERR6688578, ERR6688579, ERR6808011 KEYWORDS WGS. SOURCE Mimumesa dahlbomi ORGANISM Mimumesa dahlbomi Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Spheciformes; Crabronidae; Pemphredoninae; Psenini; Mimumesa. REFERENCE 1 (bases 1 to 59) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (11-OCT-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Mimumesa dahlbomi whole genome shotgun (WGS) project has the project accession CAKJTA000000000. This version of the project (01) has the accession number CAKJTA010000000, and consists of sequences CAKJTA010000001-CAKJTA010000059. The assembly iyMimDahl1.1 is based on 52x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..59 /organism="Mimumesa dahlbomi" /mol_type="genomic DNA" /db_xref="taxon:2495085" WGS CAKJTA010000001-CAKJTA010000059 // LOCUS CAJYYG010000000 180 rc DNA linear INV 13-OCT-2021 DEFINITION Sphecodes monilicornis, whole genome shotgun sequencing project. ACCESSION CAJYYG000000000 VERSION CAJYYG000000000.1 DBLINK BioProject: PRJEB47130 BioSample: SAMEA7746755 KEYWORDS WGS. SOURCE Sphecodes monilicornis ORGANISM Sphecodes monilicornis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Halictidae; Halictinae; Sphecodini; Sphecodes. REFERENCE 1 (bases 1 to 180) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (23-AUG-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Sphecodes monilicornis whole genome shotgun (WGS) project has the project accession CAJYYG000000000. This version of the project (01) has the accession number CAJYYG010000000, and consists of sequences CAJYYG010000001-CAJYYG010000180. The assembly iySphMoni1.1 is based on 34x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..180 /organism="Sphecodes monilicornis" /mol_type="genomic DNA" /db_xref="taxon:1190790" WGS CAJYYG010000001-CAJYYG010000180 // LOCUS CAJHXD020000000 27 rc DNA linear INV 13-OCT-2021 DEFINITION Xestia xanthographa, whole genome shotgun sequencing project. ACCESSION CAJHXD000000000 VERSION CAJHXD000000000.2 DBLINK BioProject: PRJEB41957 BioSample: SAMEA7520195 KEYWORDS WGS. SOURCE Xestia xanthographa ORGANISM Xestia xanthographa Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Noctuinae; Noctuini; Xestia. REFERENCE 1 (bases 1 to 27) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (14-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 27) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (24-AUG-2021) SC, Wellcome Sanger Institute, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT On Oct 15, 2021 this sequence version replaced CAJHXD000000000.1. The Xestia xanthographa whole genome shotgun (WGS) project has the project accession CAJHXD000000000. This version of the project (02) has the accession number CAJHXD020000000, and consists of sequences CAJHXD020000001-CAJHXD020000027. The assembly ilXesXant1.2 is based on 27x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..27 /organism="Xestia xanthographa" /mol_type="genomic DNA" /db_xref="taxon:988049" WGS CAJHXD020000001-CAJHXD020000027 // LOCUS JAJAQG010000000 21417 rc DNA linear VRT 15-OCT-2021 DEFINITION Pholidichthys leucotaenia isolate fPhoLeu1, whole genome shotgun sequencing project. ACCESSION JAJAQG000000000 VERSION JAJAQG000000000.1 DBLINK BioProject: PRJNA749576 BioSample: SAMN12623617 KEYWORDS WGS. SOURCE Pholidichthys leucotaenia ORGANISM Pholidichthys leucotaenia Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Pholidichthyidae; Pholidichthys. REFERENCE 1 (bases 1 to 21417) AUTHORS Myers,G., Brown,T., Wrinkler,S., Tracey,A., Sims,Y., Wood,J., Byrappa,V., Fedrigo,O., Jarvis,E.D. and Durbin,R. TITLE Pholidichthys leucotaenia (Convict blenny) genome, fPhoLeu1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 21417) AUTHORS Myers,G., Brown,T., Wrinkler,S., Tracey,A., Sims,Y., Wood,J., Byrappa,V., Fedrigo,O., Jarvis,E.D. and Durbin,R. TITLE Direct Submission JOURNAL Submitted (02-OCT-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Pholidichthys leucotaenia whole genome shotgun (WGS) project has the project accession JAJAQG000000000. This version of the project (01) has the accession number JAJAQG010000000, and consists of sequences JAJAQG010000001-JAJAQG010021417. ##Genome-Assembly-Data-START## Assembly Date :: 16-JUL-2021 Assembly Method :: falcon-kit v. 1.3.0; FALCON-Unzip v. 1.2.0; purge_dups v. 1.2.3; scaff10X v. 4.2; bionano Solve Solve v. 3.5_12162019; Salsa2 HiC v. 2.2; Longranger Align v. 2.2.2; pbmm2 v. 1.4.0; gcpp v. 1.0.0-1807624; bcftools v. 1.12-21-ga865a16; merfin v. 09c026d; deepvariant v. 1.1.0; gEVAL manual curation v. 2021-07-16 Assembly Name :: fPhoLeu1.alt Diploid :: Alternate Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 98.18x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..21417 /organism="Pholidichthys leucotaenia" /mol_type="genomic DNA" /isolate="fPhoLeu1" /db_xref="taxon:390368" /tissue_type="whole body" /dev_stage="adult" /country="Singapore" /lat_lon="1.3521 N 103.8198 E" /collection_date="2018-08-23" /collected_by="Byrappa Venkatesh" WGS JAJAQG010000001-JAJAQG010021417 // LOCUS JAJAQF010000000 512 rc DNA linear VRT 15-OCT-2021 DEFINITION Pholidichthys leucotaenia isolate fPhoLeu1, whole genome shotgun sequencing project. ACCESSION JAJAQF000000000 VERSION JAJAQF000000000.1 DBLINK BioProject: PRJNA749575 BioSample: SAMN12623617 KEYWORDS WGS. SOURCE Pholidichthys leucotaenia ORGANISM Pholidichthys leucotaenia Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Pholidichthyidae; Pholidichthys. REFERENCE 1 (bases 1 to 512) AUTHORS Myers,G., Brown,T., Wrinkler,S., Tracey,A., Sims,Y., Wood,J., Fedrigo,O., Jarvis,E.D. and Durbin,R. TITLE Pholidichthys leucotaenia (Convict blenny) genome, fPhoLeu1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 512) AUTHORS Myers,G., Brown,T., Wrinkler,S., Tracey,A., Sims,Y., Wood,J., Fedrigo,O., Jarvis,E.D. and Durbin,R. TITLE Direct Submission JOURNAL Submitted (02-OCT-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Pholidichthys leucotaenia whole genome shotgun (WGS) project has the project accession JAJAQF000000000. This version of the project (01) has the accession number JAJAQF010000000, and consists of sequences JAJAQF010000001-JAJAQF010000512. ##Genome-Assembly-Data-START## Assembly Date :: 16-JUL-2021 Assembly Method :: falcon-kit v. 1.3.0; FALCON-Unzip v. 1.2.0; purge_dups v. 1.2.3; scaff10X v. 4.2; bionano Solve Solve v. 3.5_12162019; Salsa2 HiC v. 2.2; Longranger Align v. 2.2.2; pbmm2 v. 1.4.0; gcpp v. 1.0.0-1807624; bcftools v. 1.12-21-ga865a16; merfin v. 09c026d; deepvariant v. 1.1.0; gEVAL manual curation v. 2021-07-16 Assembly Name :: fPhoLeu1.pri Diploid :: Principal Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 98.18x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..512 /organism="Pholidichthys leucotaenia" /mol_type="genomic DNA" /isolate="fPhoLeu1" /db_xref="taxon:390368" /tissue_type="whole body" /dev_stage="adult" /country="Singapore" /lat_lon="1.3521 N 103.8198 E" /collection_date="2018-08-23" /collected_by="Byrappa Venkatesh" WGS JAJAQF010000001-JAJAQF010000512 WGS_SCAFLD CM035836-CM035850 // LOCUS CAKJPO010000000 1529 rc DNA linear INV 11-OCT-2021 DEFINITION Patella pellucida, whole genome shotgun sequencing project. ACCESSION CAKJPO000000000 VERSION CAKJPO000000000.1 DBLINK BioProject: PRJEB47995 BioSample: SAMEA7522851 Sequence Read Archive: ERR6054924, ERR6054925, ERR6054926, ERR6054927, ERR6054928, ERR6054929, ERR6412040 KEYWORDS WGS. SOURCE Patella pellucida ORGANISM Patella pellucida Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Gastropoda; Patellogastropoda; Patelloidea; Patellidae; Patella. REFERENCE 1 (bases 1 to 1529) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (08-OCT-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Patella pellucida whole genome shotgun (WGS) project has the project accession CAKJPO000000000. This version of the project (01) has the accession number CAKJPO010000000, and consists of sequences CAKJPO010000001-CAKJPO010001529. The assembly xgPatPell1.1 is based on 31x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Chromosome 2 contains an large inversion between sister chromatids at approximately 15.43-87.97Mb. The inversion spans the majority of the chromosome 91.75Mb chromosome. FEATURES Location/Qualifiers source 1..1529 /organism="Patella pellucida" /mol_type="genomic DNA" /db_xref="taxon:88005" WGS CAKJPO010000001-CAKJPO010001529 // LOCUS CAKAVL010000000 371 rc DNA linear INV 11-OCT-2021 DEFINITION Erebia ligea, whole genome shotgun sequencing project. ACCESSION CAKAVL000000000 VERSION CAKAVL000000000.1 DBLINK BioProject: PRJEB47966 BioSample: SAMEA7523313 KEYWORDS WGS. SOURCE Erebia ligea (Arran brown butterfly) ORGANISM Erebia ligea Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Satyrinae; Erebiini; Erebia. REFERENCE 1 (bases 1 to 371) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (07-OCT-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Erebia ligea whole genome shotgun (WGS) project has the project accession CAKAVL000000000. This version of the project (01) has the accession number CAKAVL010000000, and consists of sequences CAKAVL010000001-CAKAVL010000371. The assembly ilEreLige1.1 is based on 34x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..371 /organism="Erebia ligea" /mol_type="genomic DNA" /db_xref="taxon:111903" WGS CAKAVL010000001-CAKAVL010000371 // LOCUS CAKJPM010000000 75 rc DNA linear INV 11-OCT-2021 DEFINITION Athalia rosae, whole genome shotgun sequencing project. ACCESSION CAKJPM000000000 VERSION CAKJPM000000000.1 DBLINK BioProject: PRJEB47994 BioSample: SAMEA7520481 Sequence Read Archive: ERR6054977, ERR6054978, ERR6054979, ERR6054980, ERR6054981, ERR6548410 KEYWORDS WGS. SOURCE Athalia rosae (coleseed sawfly) ORGANISM Athalia rosae Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Tenthredinoidea; Tenthredinidae; Allantinae; Athalia. REFERENCE 1 (bases 1 to 75) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (08-OCT-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Athalia rosae whole genome shotgun (WGS) project has the project accession CAKJPM000000000. This version of the project (01) has the accession number CAKJPM010000000, and consists of sequences CAKJPM010000001-CAKJPM010000075. The assembly iyAthRosa1.1 is based on 103x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..75 /organism="Athalia rosae" /mol_type="genomic DNA" /db_xref="taxon:37344" WGS CAKJPM010000001-CAKJPM010000075 // LOCUS JAIZDN010000000 48 rc DNA linear VRT 13-OCT-2021 DEFINITION Scatophagus argus isolate fScaArg1, whole genome shotgun sequencing project. ACCESSION JAIZDN000000000 VERSION JAIZDN000000000.1 DBLINK BioProject: PRJNA749579 BioSample: SAMN12623616 KEYWORDS WGS. SOURCE Scatophagus argus ORGANISM Scatophagus argus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Scatophagidae; Scatophagus. REFERENCE 1 (bases 1 to 48) AUTHORS Myers,G., Pippel,M., Wrinkler,S., Tracey,A., Sims,Y., Wood,J., Fedrigo,O., Bryappa,V., Jarvis,E.D. and Durbin,R. TITLE Scatophagus argus (Spotted scat) genome, fScaArg1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 48) AUTHORS Myers,G., Pippel,M., Wrinkler,S., Tracey,A., Sims,Y., Wood,J., Fedrigo,O., Bryappa,V., Jarvis,E.D. and Durbin,R. TITLE Direct Submission JOURNAL Submitted (04-OCT-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Scatophagus argus whole genome shotgun (WGS) project has the project accession JAIZDN000000000. This version of the project (01) has the accession number JAIZDN010000000, and consists of sequences JAIZDN010000001-JAIZDN010000048. ##Genome-Assembly-Data-START## Assembly Date :: 16-JUL-2021 Assembly Method :: falcon-kit v. 1.3.0; FALCON-Unzip v. 1.2.0; purge_dups v. 1.2.3; scaff10X v. 4.2; bionano Solve v. Solve3.5_12162019; Salsa2 HiC v. 2.2; Longranger Align v. 2.2.2; pbmm2 v. 1.4.0; gcpp v. 1.0.0-1807624; bcftools v. 1.12-21-ga865a16; merfin v. 09c026d; deepvariant v. 1.1.0; gEVAL manual curation v. 2021-07-16 Assembly Name :: fScaArg1.pri Diploid :: Principal Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 92.59x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..48 /organism="Scatophagus argus" /mol_type="genomic DNA" /isolate="fScaArg1" /db_xref="taxon:75038" /tissue_type="muscle" /dev_stage="adult" /country="Singapore" /lat_lon="1.3521 N 103.8198 E" /collection_date="2018-08-06" /collected_by="Byrappa Venkatesh" WGS JAIZDN010000001-JAIZDN010000048 WGS_SCAFLD CM035567-CM035590 WGS_SCAFLD CM035598 // LOCUS CAKJPN010000000 53 rc DNA linear INV 11-OCT-2021 DEFINITION Patella pellucida, whole genome shotgun sequencing project. ACCESSION CAKJPN000000000 VERSION CAKJPN000000000.1 DBLINK BioProject: PRJEB47996 BioSample: SAMEA7522851 Sequence Read Archive: ERR6054924, ERR6054925, ERR6054926, ERR6054927, ERR6054928, ERR6054929, ERR6412040 KEYWORDS WGS. SOURCE Patella pellucida ORGANISM Patella pellucida Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Gastropoda; Patellogastropoda; Patelloidea; Patellidae; Patella. REFERENCE 1 (bases 1 to 53) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (08-OCT-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Patella pellucida whole genome shotgun (WGS) project has the project accession CAKJPN000000000. This version of the project (01) has the accession number CAKJPN010000000, and consists of sequences CAKJPN010000001-CAKJPN010000053. The assembly xgPatPell1.1 is based on 31x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Chromosome 2 contains an large inversion between sister chromatids at approximately 15.43-87.97Mb. The inversion spans the majority of the chromosome 91.75Mb chromosome. FEATURES Location/Qualifiers source 1..53 /organism="Patella pellucida" /mol_type="genomic DNA" /db_xref="taxon:88005" WGS CAKJPN010000001-CAKJPN010000053 // LOCUS CAKJPL010000000 6 rc DNA linear INV 11-OCT-2021 DEFINITION Athalia rosae, whole genome shotgun sequencing project. ACCESSION CAKJPL000000000 VERSION CAKJPL000000000.1 DBLINK BioProject: PRJEB47993 BioSample: SAMEA7520481 Sequence Read Archive: ERR6054977, ERR6054978, ERR6054979, ERR6054980, ERR6054981, ERR6548410 KEYWORDS WGS. SOURCE Athalia rosae (coleseed sawfly) ORGANISM Athalia rosae Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Tenthredinoidea; Tenthredinidae; Allantinae; Athalia. REFERENCE 1 (bases 1 to 6) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (08-OCT-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Athalia rosae whole genome shotgun (WGS) project has the project accession CAKJPL000000000. This version of the project (01) has the accession number CAKJPL010000000, and consists of sequences CAKJPL010000001-CAKJPL010000006. The assembly iyAthRosa1.1 is based on 103x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..6 /organism="Athalia rosae" /mol_type="genomic DNA" /db_xref="taxon:37344" WGS CAKJPL010000001-CAKJPL010000006 // LOCUS CAKAVA010000000 14 rc DNA linear INV 11-OCT-2021 DEFINITION Erebia ligea, whole genome shotgun sequencing project. ACCESSION CAKAVA000000000 VERSION CAKAVA000000000.1 DBLINK BioProject: PRJEB47965 BioSample: SAMEA7523313 KEYWORDS WGS. SOURCE Erebia ligea (Arran brown butterfly) ORGANISM Erebia ligea Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Satyrinae; Erebiini; Erebia. REFERENCE 1 (bases 1 to 14) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (07-OCT-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Erebia ligea whole genome shotgun (WGS) project has the project accession CAKAVA000000000. This version of the project (01) has the accession number CAKAVA010000000, and consists of sequences CAKAVA010000001-CAKAVA010000014. The assembly ilEreLige1.1 is based on 34x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..14 /organism="Erebia ligea" /mol_type="genomic DNA" /db_xref="taxon:111903" WGS CAKAVA010000001-CAKAVA010000014 // LOCUS CAKASR010000000 4 rc DNA linear INV 11-OCT-2021 DEFINITION Orgyia antiqua, whole genome shotgun sequencing project. ACCESSION CAKASR000000000 VERSION CAKASR000000000.1 DBLINK BioProject: PRJEB47958 BioSample: SAMEA7524390 KEYWORDS WGS. SOURCE Orgyia antiqua (rusty tussock moth) ORGANISM Orgyia antiqua Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Erebidae; Lymantriinae; Orgyia. REFERENCE 1 (bases 1 to 4) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (06-OCT-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Orgyia antiqua whole genome shotgun (WGS) project has the project accession CAKASR000000000. This version of the project (01) has the accession number CAKASR010000000, and consists of sequences CAKASR010000001-CAKASR010000004. The assembly ilOrgAnti1.1 is based on 14x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..4 /organism="Orgyia antiqua" /mol_type="genomic DNA" /db_xref="taxon:335469" WGS CAKASR010000001-CAKASR010000004 // LOCUS JAIZDO010000000 1592 rc DNA linear VRT 07-OCT-2021 DEFINITION Scatophagus argus isolate fScaArg1, whole genome shotgun sequencing project. ACCESSION JAIZDO000000000 VERSION JAIZDO000000000.1 DBLINK BioProject: PRJNA749580 BioSample: SAMN12623616 KEYWORDS WGS. SOURCE Scatophagus argus ORGANISM Scatophagus argus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Scatophagidae; Scatophagus. REFERENCE 1 (bases 1 to 1592) AUTHORS Myers,G., Pippel,M., Wrinkler,S., Tracey,A., Sims,Y., Wood,J., Fedrigo,O., Bryappa,V., Jarvis,E.D. and Durbin,R. TITLE Scatophagus argus (Spotted scat) genome, fScaArg1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 1592) AUTHORS Myers,G., Pippel,M., Wrinkler,S., Tracey,A., Sims,Y., Wood,J., Fedrigo,O., Bryappa,V., Jarvis,E.D. and Durbin,R. TITLE Direct Submission JOURNAL Submitted (04-OCT-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Scatophagus argus whole genome shotgun (WGS) project has the project accession JAIZDO000000000. This version of the project (01) has the accession number JAIZDO010000000, and consists of sequences JAIZDO010000001-JAIZDO010001592. ##Genome-Assembly-Data-START## Assembly Date :: 16-JUL-2021 Assembly Method :: falcon-kit v. 1.3.0; FALCON-Unzip v. 1.2.0; purge_dups v. 1.2.3; scaff10X v. 4.2; bionano Solve Solve v. 3.5_12162019; Salsa2 HiC v. 2.2; Longranger Align v. 2.2.2; pbmm2 v. 1.4.0; gcpp v. 1.0.0-1807624; bcftools v. 1.12-21-ga865a16; merfin v. 09c026d; deepvariant v. 1.1.0; gEVAL manual curation v. 2021-07-16 Assembly Name :: fScaArg1.alt Diploid :: Alternate Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 92.59x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1592 /organism="Scatophagus argus" /mol_type="genomic DNA" /isolate="fScaArg1" /db_xref="taxon:75038" /tissue_type="muscle" /dev_stage="adult" /country="Singapore" /lat_lon="1.3521 N 103.8198 E" /collection_date="2018-08-06" /collected_by="Byrappa Venkatesh" WGS JAIZDO010000001-JAIZDO010001592 // LOCUS JAENSL010000000 685 rc DNA linear VRT 01-OCT-2021 DEFINITION Gallus gallus breed Cross of Broiler mother + white leghorn layer father isolate bGalGal1, whole genome shotgun sequencing project. ACCESSION JAENSL000000000 VERSION JAENSL000000000.1 DBLINK BioProject: PRJNA660758 BioSample: SAMN15960293 KEYWORDS WGS. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE 1 (bases 1 to 685) AUTHORS Warren,W., Formenti,G., Fedrigo,O., Haase,B., Mountcastle,J., Balacco,J., Tracey,A., Schneider,V., Okimoto,R., Cheng,H., Hawken,R., Howe,K. and Jarvis,E.D. TITLE Gallus gallus (Chicken) genome, bGalGal1, GRCg7w, paternal haplotype autosomes JOURNAL Unpublished REFERENCE 2 (bases 1 to 685) AUTHORS Warren,W., Formenti,G., Fedrigo,O., Haase,B., Mountcastle,J., Balacco,J., Tracey,A., Schneider,V., Okimoto,R., Cheng,H., Hawken,R., Howe,K. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (14-NOV-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA REFERENCE 3 (bases 1 to 685) AUTHORS Warren,W., Formenti,G., Fedrigo,O., Haase,B., Mountcastle,J., Balacco,J., Tracey,A., Schneider,V., Okimoto,R., Cheng,H., Hawken,R., Howe,K. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (04-SEP-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT On Oct 1, 2021 this sequence version replaced gi:1955616402. The Gallus gallus whole genome shotgun (WGS) project has the project accession JAENSL000000000. This version of the project (01) has the accession number JAENSL010000000, and consists of sequences JAENSL010000001-JAENSL010000685. Contigs JAENSL010000510-JAENSL010000685 were added to the assembly in September 2021. They are copies of the sequences of the sex chromosomes W and Z from the corresponding maternal haplotype assembly JAENSK000000000 (bGalGal1.mat.broiler.GRCg7b, GCA_016699485.1). Therefore, this updated assembly bGalGal1.pat.whiteleghornlayer.GRCg7w_WZ (GCA_016700215.2) represents the male/paternal haplotype assembly plus the female/maternal haplotype assembly's sex chromosomes. ##Genome-Assembly-Data-START## Assembly Date :: 09-JUL-2020 Assembly Method :: TrioCanu v. 1.8; purge_dups v. 1.0.0; Scaff 10x v. 4.1.0; Bionano solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow polishing and gap filling v. SMRTLink7.0.1; Freebayes v. 1.3.1; gEVAL manual curation v. 2020-07-09; VGP trio assembly pipeline v. 1.6 Assembly Name :: bGalGal1.pat.whiteleghornlayer.GRCg7w_WZ Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 102.01x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..685 /organism="Gallus gallus" /mol_type="genomic DNA" /isolate="bGalGal1" /db_xref="taxon:9031" /sex="female" /tissue_type="blood" /country="USA:Fayetteville, Arkansas" /lat_lon="36.0822 N 94.1719 W" /collection_date="20-May-2019" /collected_by="Nick Anthony" /note="breed: Cross of Broiler mother + white leghorn layer father" WGS JAENSL010000001-JAENSL010000685 WGS_SCAFLD CM028523-CM028561 WGS_SCAFLD CM035081-CM035082 WGS_SCAFLD MU179280-MU179296 WGS_SCAFLD MU255142-MU255145 // LOCUS CAKAJO010000000 2229 rc DNA linear INV 30-SEP-2021 DEFINITION Steromphala cineraria, whole genome shotgun sequencing project. ACCESSION CAKAJO000000000 VERSION CAKAJO000000000.1 DBLINK BioProject: PRJEB47763 BioSample: SAMEA7536348 KEYWORDS WGS. SOURCE Steromphala cineraria ORGANISM Steromphala cineraria Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Gastropoda; Vetigastropoda; Trochida; Trochoidea; Trochidae; Cantharidinae; Steromphala. REFERENCE 1 (bases 1 to 2229) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Steromphala cineraria whole genome shotgun (WGS) project has the project accession CAKAJO000000000. This version of the project (01) has the accession number CAKAJO010000000, and consists of sequences CAKAJO010000001-CAKAJO010002229. The assembly xgSteCine2.1 is based on 42x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Large inversions between sister chromatids can be seen on chromosome 5 29.7-60.7mb and chromosome 11 17.7-39.7mb. Possible inversions on chromosome 11 3.4-39.4 and 18-66mb. FEATURES Location/Qualifiers source 1..2229 /organism="Steromphala cineraria" /mol_type="genomic DNA" /db_xref="taxon:216125" WGS CAKAJO010000001-CAKAJO010002229 // LOCUS QXTK01000000 22244 rc DNA linear MAM 01-OCT-2021 DEFINITION Ursus arctos horribilis isolate GAN/ISIS:MIG12-29695490/34125, whole genome shotgun sequencing project. ACCESSION QXTK00000000 VERSION QXTK00000000.1 DBLINK BioProject: PRJNA487641 BioSample: SAMN09907428 KEYWORDS WGS. SOURCE Ursus arctos horribilis ORGANISM Ursus arctos horribilis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus. REFERENCE 1 (bases 1 to 22244) AUTHORS Taylor,G.A., Kirk,H., Coombe,L., Jackman,S.D., Chu,J., Tse,K., Cheng,D., Chuah,E., Pandoh,P., Carlsen,R., Zhao,Y., Mungall,A.J., Moore,R., Birol,I., Franke,M., Marra,M.A., Dutton,C. and Jones,S.J.M. TITLE The Genome of the North American Brown Bear or Grizzly: Ursus arctos ssp. horribilis JOURNAL Genes (Basel) 9 (12), E598 (2018) PUBMED 30513700 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 22244) AUTHORS Taylor,G.A., Kirk,H., Tse,K., Cheung,D., Chuah,E., Pandoh,P., Thorne,R., Zhao,Y., Mungall,A.J., Moore,R., Maria,F., Marra,M., Dutton,C. and Jones,S.J. TITLE Direct Submission JOURNAL Submitted (29-AUG-2018) Genome Sciences Centre, BC Cancer Agency, Canada's Michael Smith Genome Sciences Centre, 100-570 West 7th Ave, Vancouver, BC V5Z-4S6, Canada COMMENT The Ursus arctos horribilis whole genome shotgun (WGS) project has the project accession QXTK00000000. This version of the project (01) has the accession number QXTK01000000, and consists of sequences QXTK01000001-QXTK01022244. The mitochondrial genome record CM035080 was created in October 2021 when contig QXTK01022244 was recognized as being mitochondrial. This correction caused the assembly's accession to be updated to GCA_003584765.2. ##Genome-Assembly-Data-START## Assembly Date :: JUL-2018 Assembly Method :: Supernova v. 2.0.1 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 50.0x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..22244 /organism="Ursus arctos horribilis" /mol_type="genomic DNA" /isolate="GAN/ISIS:MIG12-29695490/34125" /sub_species="horribilis" /db_xref="taxon:116960" /sex="male" /tissue_type="blood" /dev_stage="adult" WGS QXTK01000001-QXTK01022244 WGS_SCAFLD CM035080 WGS_SCAFLD KZ986268-KZ987398 // LOCUS CAKAJM010000000 1136 rc DNA linear INV 30-SEP-2021 DEFINITION Mesoligia furuncula, whole genome shotgun sequencing project. ACCESSION CAKAJM000000000 VERSION CAKAJM000000000.1 DBLINK BioProject: PRJEB47755 BioSample: SAMEA7701289 KEYWORDS WGS. SOURCE Mesoligia furuncula ORGANISM Mesoligia furuncula Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Mesoligia. REFERENCE 1 (bases 1 to 1136) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Mesoligia furuncula whole genome shotgun (WGS) project has the project accession CAKAJM000000000. This version of the project (01) has the accession number CAKAJM010000000, and consists of sequences CAKAJM010000001-CAKAJM010001136. The assembly ilMesFuru1.1 is based on 24x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Linkage has been observed in the Hi-C map between chromosomes 8 and 25. This linkage is specific, such that an alternative karyotype could be constructed {8A:8B,25A:25B} and {8B:25A,8A,25B}. No support for this fusion between chromosome 8 and 25 can be seen in the PacBio reads which derive from a different sample to the Hi-C. FEATURES Location/Qualifiers source 1..1136 /organism="Mesoligia furuncula" /mol_type="genomic DNA" /db_xref="taxon:997551" WGS CAKAJM010000001-CAKAJM010001136 // LOCUS CAKAJV010000000 301 rc DNA linear INV 30-SEP-2021 DEFINITION Xestia c-nigrum, whole genome shotgun sequencing project. ACCESSION CAKAJV000000000 VERSION CAKAJV000000000.1 DBLINK BioProject: PRJEB47752 BioSample: SAMEA8239458 KEYWORDS WGS. SOURCE Xestia c-nigrum (spotted cutworm) ORGANISM Xestia c-nigrum Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Noctuinae; Noctuini; Xestia. REFERENCE 1 (bases 1 to 301) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Xestia c-nigrum whole genome shotgun (WGS) project has the project accession CAKAJV000000000. This version of the project (01) has the accession number CAKAJV010000000, and consists of sequences CAKAJV010000001-CAKAJV010000301. The assembly ilXesCnig1.1 is based on 35x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..301 /organism="Xestia c-nigrum" /mol_type="genomic DNA" /db_xref="taxon:987431" WGS CAKAJV010000001-CAKAJV010000301 // LOCUS CAKAJD010000000 2093 rc DNA linear INV 30-SEP-2021 DEFINITION Gymnosoma rotundatum, whole genome shotgun sequencing project. ACCESSION CAKAJD000000000 VERSION CAKAJD000000000.1 DBLINK BioProject: PRJEB47733 BioSample: SAMEA7849381 KEYWORDS WGS. SOURCE Gymnosoma rotundatum ORGANISM Gymnosoma rotundatum Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Oestroidea; Tachinidae; Phasiinae; Gymnosomatini; Gymnosoma. REFERENCE 1 (bases 1 to 2093) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Gymnosoma rotundatum whole genome shotgun (WGS) project has the project accession CAKAJD000000000. This version of the project (01) has the accession number CAKAJD010000000, and consists of sequences CAKAJD010000001-CAKAJD010002093. The assembly idGymRotn1.1 is based on 31x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. The X chromosome has been identified based on half diploid coverage. There are a large amount of spare scaffolds which may be X or may be Y as we are uncertain whether the karyotype is XO or XY. FEATURES Location/Qualifiers source 1..2093 /organism="Gymnosoma rotundatum" /mol_type="genomic DNA" /db_xref="taxon:569046" WGS CAKAJD010000001-CAKAJD010002093 // LOCUS CAKAJF010000000 2490 rc DNA linear INV 30-SEP-2021 DEFINITION Griposia aprilina, whole genome shotgun sequencing project. ACCESSION CAKAJF000000000 VERSION CAKAJF000000000.1 DBLINK BioProject: PRJEB47742 BioSample: SAMEA8603200 KEYWORDS WGS. SOURCE Griposia aprilina ORGANISM Griposia aprilina Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Griposia. REFERENCE 1 (bases 1 to 2490) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Griposia aprilina whole genome shotgun (WGS) project has the project accession CAKAJF000000000. This version of the project (01) has the accession number CAKAJF010000000, and consists of sequences CAKAJF010000001-CAKAJF010002490. The assembly ilGriApri1.1 is based on 31x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..2490 /organism="Griposia aprilina" /mol_type="genomic DNA" /db_xref="taxon:1101106" WGS CAKAJF010000001-CAKAJF010002490 // LOCUS CAKAIW010000000 1694 rc DNA linear INV 30-SEP-2021 DEFINITION Omphaloscelis lunosa, whole genome shotgun sequencing project. ACCESSION CAKAIW000000000 VERSION CAKAIW000000000.1 DBLINK BioProject: PRJEB47744 BioSample: SAMEA8603195 KEYWORDS WGS. SOURCE Omphaloscelis lunosa ORGANISM Omphaloscelis lunosa Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Omphaloscelis. REFERENCE 1 (bases 1 to 1694) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Omphaloscelis lunosa whole genome shotgun (WGS) project has the project accession CAKAIW000000000. This version of the project (01) has the accession number CAKAIW010000000, and consists of sequences CAKAIW010000001-CAKAIW010001694. The assembly ilOmpLuno1.1 is based on 29x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. W chromosome identified based on approximately half diploid coverage level in some parts, and based on grouping by Hi-C data. The named W-scaffolds appear very repetitive as we would expect and therefore have an erratic coverage profile. Attempts to confirm as W via sequence homology with other lepidoptera were unsuccessful. 2 of the largest unassigned scaffolds place equally well on the ends of chromosome 27 and chromosome 28. FEATURES Location/Qualifiers source 1..1694 /organism="Omphaloscelis lunosa" /mol_type="genomic DNA" /db_xref="taxon:2492375" WGS CAKAIW010000001-CAKAIW010001694 // LOCUS CAKAJQ010000000 765 rc DNA linear PLN 30-SEP-2021 DEFINITION Malus domestica, whole genome shotgun sequencing project. ACCESSION CAKAJQ000000000 VERSION CAKAJQ000000000.1 DBLINK BioProject: PRJEB47760 BioSample: SAMEA9239977 KEYWORDS WGS. SOURCE Malus domestica (apple) ORGANISM Malus domestica Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus. REFERENCE 1 (bases 1 to 765) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Malus domestica whole genome shotgun (WGS) project has the project accession CAKAJQ000000000. This version of the project (01) has the accession number CAKAJQ010000000, and consists of sequences CAKAJQ010000001-CAKAJQ010000765. The assembly drMalDome58.1 is based on 24x PacBio data, 10X Genomics Chromium data, and Arima2 Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds are named by synteny based on Malus domestica (apple) GCA_004115385.1. Inversions between haplotypes observed in chromosomes 1 5.49-7.32mb, 11 31.38-33.79mb, 12 10.26-14.45mb, 13 34.66-35.91mb and 17 22.1-25.48mb. FEATURES Location/Qualifiers source 1..765 /organism="Malus domestica" /mol_type="genomic DNA" /db_xref="taxon:3750" WGS CAKAJQ010000001-CAKAJQ010000765 // LOCUS CAKAJP010000000 434 rc DNA linear PLN 30-SEP-2021 DEFINITION Malus domestica, whole genome shotgun sequencing project. ACCESSION CAKAJP000000000 VERSION CAKAJP000000000.1 DBLINK BioProject: PRJEB47757 BioSample: SAMEA9197674 KEYWORDS WGS. SOURCE Malus domestica (apple) ORGANISM Malus domestica Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus. REFERENCE 1 (bases 1 to 434) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Malus domestica whole genome shotgun (WGS) project has the project accession CAKAJP000000000. This version of the project (01) has the accession number CAKAJP010000000, and consists of sequences CAKAJP010000001-CAKAJP010000434. The assembly drMalDome11.1 is based on 26x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds are named by synteny based on Malus domestica (apple) GCA_004115385.1. Shared sequences between chromosomes are visible in the Hi-C map in agreement with the findings of https://doi.org/10.1038/ng.654. Evidence of inversions between haplotypes from the Hi-C map in chromosome 1 1.28-7.73mb and chromosome 5 14.88-16.83mb. FEATURES Location/Qualifiers source 1..434 /organism="Malus domestica" /mol_type="genomic DNA" /db_xref="taxon:3750" WGS CAKAJP010000001-CAKAJP010000434 // LOCUS CAKAJS010000000 873 rc DNA linear PLN 30-SEP-2021 DEFINITION Malus domestica, whole genome shotgun sequencing project. ACCESSION CAKAJS000000000 VERSION CAKAJS000000000.1 DBLINK BioProject: PRJEB47759 BioSample: SAMEA8717325 KEYWORDS WGS. SOURCE Malus domestica (apple) ORGANISM Malus domestica Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus. REFERENCE 1 (bases 1 to 873) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Malus domestica whole genome shotgun (WGS) project has the project accession CAKAJS000000000. This version of the project (01) has the accession number CAKAJS010000000, and consists of sequences CAKAJS010000001-CAKAJS010000873. The assembly drMalDome5.1 is based on 25x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds are named by synteny based on Malus domestica (apple) GCA_004115385.1. From the Hi-C data, inversions between haplotypes can be seen on chromosome 4 11.13-14.86mb, chromosome 6 13.34-17.21mb, chromosome 11 22.9-24.24mb and 30.06-32.57mb, chromosome 12 10.9-11.98mb, chromosome 13 34-37mb. FEATURES Location/Qualifiers source 1..873 /organism="Malus domestica" /mol_type="genomic DNA" /db_xref="taxon:3750" WGS CAKAJS010000001-CAKAJS010000873 // LOCUS CAKAJG010000000 3090 rc DNA linear INV 30-SEP-2021 DEFINITION Eristalis arbustorum, whole genome shotgun sequencing project. ACCESSION CAKAJG000000000 VERSION CAKAJG000000000.1 DBLINK BioProject: PRJEB47735 BioSample: SAMEA7520036 KEYWORDS WGS. SOURCE Eristalis arbustorum ORGANISM Eristalis arbustorum Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Syrphoidea; Syrphidae; Eristalinae; Eristalini; Eristalis. REFERENCE 1 (bases 1 to 3090) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Eristalis arbustorum whole genome shotgun (WGS) project has the project accession CAKAJG000000000. This version of the project (01) has the accession number CAKAJG010000000, and consists of sequences CAKAJG010000001-CAKAJG010003090. The assembly idEriArbu1.1 is based on 19x PacBio data, 10X Genomics Chromium data, and Qiagen Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Based on published karyotype potential micro-chromosomes have not been recovered in the curated assembly (Rozek,M et al (1995) Folia Biologica. C-banding patterns in chromosome of four species of syrphid flies (Diptera, Syrphidae)). FEATURES Location/Qualifiers source 1..3090 /organism="Eristalis arbustorum" /mol_type="genomic DNA" /db_xref="taxon:1124515" WGS CAKAJG010000001-CAKAJG010003090 // LOCUS CAKAJC010000000 1444 rc DNA linear INV 30-SEP-2021 DEFINITION Lasioglossum lativentre, whole genome shotgun sequencing project. ACCESSION CAKAJC000000000 VERSION CAKAJC000000000.1 DBLINK BioProject: PRJEB47728 BioSample: SAMEA7746765 KEYWORDS WGS. SOURCE Lasioglossum lativentre ORGANISM Lasioglossum lativentre Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Halictidae; Halictinae; Halictini; Lasioglossum; Lasioglossum. REFERENCE 1 (bases 1 to 1444) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Lasioglossum lativentre whole genome shotgun (WGS) project has the project accession CAKAJC000000000. This version of the project (01) has the accession number CAKAJC010000000, and consists of sequences CAKAJC010000001-CAKAJC010001444. The assembly iyLasLatv2.1 is based on 34x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..1444 /organism="Lasioglossum lativentre" /mol_type="genomic DNA" /db_xref="taxon:88531" WGS CAKAJC010000001-CAKAJC010001444 // LOCUS CAKAIY010000000 590 rc DNA linear INV 30-SEP-2021 DEFINITION Lasioglossum morio, whole genome shotgun sequencing project. ACCESSION CAKAIY000000000 VERSION CAKAIY000000000.1 DBLINK BioProject: PRJEB47730 BioSample: SAMEA7746456 KEYWORDS WGS. SOURCE Lasioglossum morio ORGANISM Lasioglossum morio Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Halictidae; Halictinae; Halictini; Lasioglossum; Dialictus. REFERENCE 1 (bases 1 to 590) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Lasioglossum morio whole genome shotgun (WGS) project has the project accession CAKAIY000000000. This version of the project (01) has the accession number CAKAIY010000000, and consists of sequences CAKAIY010000001-CAKAIY010000590. The assembly iyLasMori1.1 is based on 35x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Several repeat types can be seen to cluster by Hi-C yet have no association with the defined chromosomes. These repeats make up a large proportion of the assembly. FEATURES Location/Qualifiers source 1..590 /organism="Lasioglossum morio" /mol_type="genomic DNA" /db_xref="taxon:88514" WGS CAKAIY010000001-CAKAIY010000590 // LOCUS CAKAIX010000000 774 rc DNA linear INV 30-SEP-2021 DEFINITION Cheilosia vulpina, whole genome shotgun sequencing project. ACCESSION CAKAIX000000000 VERSION CAKAIX000000000.1 DBLINK BioProject: PRJEB47737 BioSample: SAMEA7746587 KEYWORDS WGS. SOURCE Cheilosia vulpina ORGANISM Cheilosia vulpina Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Syrphoidea; Syrphidae; Eristalinae; Rhingiini; Cheilosia. REFERENCE 1 (bases 1 to 774) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Cheilosia vulpina whole genome shotgun (WGS) project has the project accession CAKAIX000000000. This version of the project (01) has the accession number CAKAIX010000000, and consists of sequences CAKAIX010000001-CAKAIX010000774. The assembly idCheVulp2.1 is based on 51x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..774 /organism="Cheilosia vulpina" /mol_type="genomic DNA" /db_xref="taxon:273409" WGS CAKAIX010000001-CAKAIX010000774 // LOCUS CAKAJJ010000000 860 rc DNA linear INV 30-SEP-2021 DEFINITION Haliclystus octoradiatus, whole genome shotgun sequencing project. ACCESSION CAKAJJ000000000 VERSION CAKAJJ000000000.1 DBLINK BioProject: PRJEB47764 BioSample: SAMEA7522858 KEYWORDS WGS. SOURCE Haliclystus octoradiatus ORGANISM Haliclystus octoradiatus Eukaryota; Metazoa; Cnidaria; Staurozoa; Stauromedusae; Myostaurida; Haliclystidae; Haliclystus. REFERENCE 1 (bases 1 to 860) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Haliclystus octoradiatus whole genome shotgun (WGS) project has the project accession CAKAJJ000000000. This version of the project (01) has the accession number CAKAJJ010000000, and consists of sequences CAKAJJ010000001-CAKAJJ010000860. The assembly jrHalOcto1.1 is based on 68x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..860 /organism="Haliclystus octoradiatus" /mol_type="genomic DNA" /db_xref="taxon:313498" WGS CAKAJJ010000001-CAKAJJ010000860 // LOCUS CAKAJX010000000 205 rc DNA linear INV 30-SEP-2021 DEFINITION Emmelina monodactyla, whole genome shotgun sequencing project. ACCESSION CAKAJX000000000 VERSION CAKAJX000000000.1 DBLINK BioProject: PRJEB47748 BioSample: SAMEA8603203 KEYWORDS WGS. SOURCE Emmelina monodactyla (morning-glory plume moth) ORGANISM Emmelina monodactyla Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pterophoroidea; Pterophoridae; Pterophorinae; Emmelina. REFERENCE 1 (bases 1 to 205) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Emmelina monodactyla whole genome shotgun (WGS) project has the project accession CAKAJX000000000. This version of the project (01) has the accession number CAKAJX010000000, and consists of sequences CAKAJX010000001-CAKAJX010000205. The assembly ilEmmMono1.1 is based on 38x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..205 /organism="Emmelina monodactyla" /mol_type="genomic DNA" /db_xref="taxon:467774" WGS CAKAJX010000001-CAKAJX010000205 // LOCUS CAKAJE010000000 2141 rc DNA linear INV 30-SEP-2021 DEFINITION Macropis europaea, whole genome shotgun sequencing project. ACCESSION CAKAJE000000000 VERSION CAKAJE000000000.1 DBLINK BioProject: PRJEB47740 BioSample: SAMEA7746440 KEYWORDS WGS. SOURCE Macropis europaea ORGANISM Macropis europaea Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Melittinae; Macropis. REFERENCE 1 (bases 1 to 2141) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Macropis europaea whole genome shotgun (WGS) project has the project accession CAKAJE000000000. This version of the project (01) has the accession number CAKAJE010000000, and consists of sequences CAKAJE010000001-CAKAJE010002141. The assembly iyMacEuro1.1 is based on 30x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. We see an unusually large proportion of satellite repeat in this assembly which is unplaceable using the Hi-C map. FEATURES Location/Qualifiers source 1..2141 /organism="Macropis europaea" /mol_type="genomic DNA" /db_xref="taxon:253715" WGS CAKAJE010000001-CAKAJE010002141 // LOCUS CAKAJA010000000 542 rc DNA linear INV 30-SEP-2021 DEFINITION Lasioglossum morio, whole genome shotgun sequencing project. ACCESSION CAKAJA000000000 VERSION CAKAJA000000000.1 DBLINK BioProject: PRJEB47731 BioSample: SAMEA7746456 KEYWORDS WGS. SOURCE Lasioglossum morio ORGANISM Lasioglossum morio Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Halictidae; Halictinae; Halictini; Lasioglossum; Dialictus. REFERENCE 1 (bases 1 to 542) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Lasioglossum morio whole genome shotgun (WGS) project has the project accession CAKAJA000000000. This version of the project (01) has the accession number CAKAJA010000000, and consists of sequences CAKAJA010000001-CAKAJA010000542. The assembly iyLasMori1.1 is based on 35x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Several repeat types can be seen to cluster by Hi-C yet have no association with the defined chromosomes. These repeats make up a large proportion of the assembly. FEATURES Location/Qualifiers source 1..542 /organism="Lasioglossum morio" /mol_type="genomic DNA" /db_xref="taxon:88514" WGS CAKAJA010000001-CAKAJA010000542 // LOCUS CAKAJI010000000 1129 rc DNA linear INV 30-SEP-2021 DEFINITION Lasioglossum lativentre, whole genome shotgun sequencing project. ACCESSION CAKAJI000000000 VERSION CAKAJI000000000.1 DBLINK BioProject: PRJEB47729 BioSample: SAMEA7746765 KEYWORDS WGS. SOURCE Lasioglossum lativentre ORGANISM Lasioglossum lativentre Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Halictidae; Halictinae; Halictini; Lasioglossum; Lasioglossum. REFERENCE 1 (bases 1 to 1129) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Lasioglossum lativentre whole genome shotgun (WGS) project has the project accession CAKAJI000000000. This version of the project (01) has the accession number CAKAJI010000000, and consists of sequences CAKAJI010000001-CAKAJI010001129. The assembly iyLasLatv2.1 is based on 34x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..1129 /organism="Lasioglossum lativentre" /mol_type="genomic DNA" /db_xref="taxon:88531" WGS CAKAJI010000001-CAKAJI010001129 // LOCUS CAKAJB010000000 421 rc DNA linear INV 30-SEP-2021 DEFINITION Gymnosoma rotundatum, whole genome shotgun sequencing project. ACCESSION CAKAJB000000000 VERSION CAKAJB000000000.1 DBLINK BioProject: PRJEB47732 BioSample: SAMEA7849381 KEYWORDS WGS. SOURCE Gymnosoma rotundatum ORGANISM Gymnosoma rotundatum Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Oestroidea; Tachinidae; Phasiinae; Gymnosomatini; Gymnosoma. REFERENCE 1 (bases 1 to 421) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Gymnosoma rotundatum whole genome shotgun (WGS) project has the project accession CAKAJB000000000. This version of the project (01) has the accession number CAKAJB010000000, and consists of sequences CAKAJB010000001-CAKAJB010000421. The assembly idGymRotn1.1 is based on 31x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. The X chromosome has been identified based on half diploid coverage. There are a large amount of spare scaffolds which may be X or may be Y as we are uncertain whether the karyotype is XO or XY. FEATURES Location/Qualifiers source 1..421 /organism="Gymnosoma rotundatum" /mol_type="genomic DNA" /db_xref="taxon:569046" WGS CAKAJB010000001-CAKAJB010000421 // LOCUS CAKAIZ010000000 512 rc DNA linear INV 30-SEP-2021 DEFINITION Eristalis arbustorum, whole genome shotgun sequencing project. ACCESSION CAKAIZ000000000 VERSION CAKAIZ000000000.1 DBLINK BioProject: PRJEB47734 BioSample: SAMEA7520036 KEYWORDS WGS. SOURCE Eristalis arbustorum ORGANISM Eristalis arbustorum Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Syrphoidea; Syrphidae; Eristalinae; Eristalini; Eristalis. REFERENCE 1 (bases 1 to 512) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Eristalis arbustorum whole genome shotgun (WGS) project has the project accession CAKAIZ000000000. This version of the project (01) has the accession number CAKAIZ010000000, and consists of sequences CAKAIZ010000001-CAKAIZ010000512. The assembly idEriArbu1.1 is based on 19x PacBio data, 10X Genomics Chromium data, and Qiagen Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Based on published karyotype potential micro-chromosomes have not been recovered in the curated assembly (Rozek,M et al (1995) Folia Biologica. C-banding patterns in chromosome of four species of syrphid flies (Diptera, Syrphidae)). FEATURES Location/Qualifiers source 1..512 /organism="Eristalis arbustorum" /mol_type="genomic DNA" /db_xref="taxon:1124515" WGS CAKAIZ010000001-CAKAIZ010000512 // LOCUS CAKAJN010000000 265 rc DNA linear INV 30-SEP-2021 DEFINITION Steromphala cineraria, whole genome shotgun sequencing project. ACCESSION CAKAJN000000000 VERSION CAKAJN000000000.1 DBLINK BioProject: PRJEB47762 BioSample: SAMEA7536348 KEYWORDS WGS. SOURCE Steromphala cineraria ORGANISM Steromphala cineraria Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Gastropoda; Vetigastropoda; Trochida; Trochoidea; Trochidae; Cantharidinae; Steromphala. REFERENCE 1 (bases 1 to 265) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Steromphala cineraria whole genome shotgun (WGS) project has the project accession CAKAJN000000000. This version of the project (01) has the accession number CAKAJN010000000, and consists of sequences CAKAJN010000001-CAKAJN010000265. The assembly xgSteCine2.1 is based on 42x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Large inversions between sister chromatids can be seen on chromosome 5 29.7-60.7mb and chromosome 11 17.7-39.7mb. Possible inversions on chromosome 11 3.4-39.4 and 18-66mb. FEATURES Location/Qualifiers source 1..265 /organism="Steromphala cineraria" /mol_type="genomic DNA" /db_xref="taxon:216125" WGS CAKAJN010000001-CAKAJN010000265 // LOCUS CAKAIT010000000 17 rc DNA linear INV 30-SEP-2021 DEFINITION Omphaloscelis lunosa, whole genome shotgun sequencing project. ACCESSION CAKAIT000000000 VERSION CAKAIT000000000.1 DBLINK BioProject: PRJEB47743 BioSample: SAMEA8603195 KEYWORDS WGS. SOURCE Omphaloscelis lunosa ORGANISM Omphaloscelis lunosa Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Omphaloscelis. REFERENCE 1 (bases 1 to 17) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Omphaloscelis lunosa whole genome shotgun (WGS) project has the project accession CAKAIT000000000. This version of the project (01) has the accession number CAKAIT010000000, and consists of sequences CAKAIT010000001-CAKAIT010000017. The assembly ilOmpLuno1.1 is based on 29x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. W chromosome identified based on approximately half diploid coverage level in some parts, and based on grouping by Hi-C data. The named W-scaffolds appear very repetitive as we would expect and therefore have an erratic coverage profile. Attempts to confirm as W via sequence homology with other lepidoptera were unsuccessful. 2 of the largest unassigned scaffolds place equally well on the ends of chromosome 27 and chromosome 28. FEATURES Location/Qualifiers source 1..17 /organism="Omphaloscelis lunosa" /mol_type="genomic DNA" /db_xref="taxon:2492375" WGS CAKAIT010000001-CAKAIT010000017 // LOCUS CAKAJH010000000 121 rc DNA linear INV 30-SEP-2021 DEFINITION Macropis europaea, whole genome shotgun sequencing project. ACCESSION CAKAJH000000000 VERSION CAKAJH000000000.1 DBLINK BioProject: PRJEB47739 BioSample: SAMEA7746440 KEYWORDS WGS. SOURCE Macropis europaea ORGANISM Macropis europaea Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Melittinae; Macropis. REFERENCE 1 (bases 1 to 121) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Macropis europaea whole genome shotgun (WGS) project has the project accession CAKAJH000000000. This version of the project (01) has the accession number CAKAJH010000000, and consists of sequences CAKAJH010000001-CAKAJH010000121. The assembly iyMacEuro1.1 is based on 30x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. We see an unusually large proportion of satellite repeat in this assembly which is unplaceable using the Hi-C map. FEATURES Location/Qualifiers source 1..121 /organism="Macropis europaea" /mol_type="genomic DNA" /db_xref="taxon:253715" WGS CAKAJH010000001-CAKAJH010000121 // LOCUS CAKAJU010000000 44 rc DNA linear PLN 30-SEP-2021 DEFINITION Malus domestica, whole genome shotgun sequencing project. ACCESSION CAKAJU000000000 VERSION CAKAJU000000000.1 DBLINK BioProject: PRJEB47761 BioSample: SAMEA9239977 KEYWORDS WGS. SOURCE Malus domestica (apple) ORGANISM Malus domestica Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus. REFERENCE 1 (bases 1 to 44) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Malus domestica whole genome shotgun (WGS) project has the project accession CAKAJU000000000. This version of the project (01) has the accession number CAKAJU010000000, and consists of sequences CAKAJU010000001-CAKAJU010000044. The assembly drMalDome58.1 is based on 24x PacBio data, 10X Genomics Chromium data, and Arima2 Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds are named by synteny based on Malus domestica (apple) GCA_004115385.1. Inversions between haplotypes observed in chromosomes 1 5.49-7.32mb, 11 31.38-33.79mb, 12 10.26-14.45mb, 13 34.66-35.91mb and 17 22.1-25.48mb. FEATURES Location/Qualifiers source 1..44 /organism="Malus domestica" /mol_type="genomic DNA" /db_xref="taxon:3750" WGS CAKAJU010000001-CAKAJU010000044 // LOCUS CAKAIV010000000 10 rc DNA linear INV 30-SEP-2021 DEFINITION Griposia aprilina, whole genome shotgun sequencing project. ACCESSION CAKAIV000000000 VERSION CAKAIV000000000.1 DBLINK BioProject: PRJEB47741 BioSample: SAMEA8603200 KEYWORDS WGS. SOURCE Griposia aprilina ORGANISM Griposia aprilina Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Griposia. REFERENCE 1 (bases 1 to 10) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Griposia aprilina whole genome shotgun (WGS) project has the project accession CAKAIV000000000. This version of the project (01) has the accession number CAKAIV010000000, and consists of sequences CAKAIV010000001-CAKAIV010000010. The assembly ilGriApri1.1 is based on 31x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..10 /organism="Griposia aprilina" /mol_type="genomic DNA" /db_xref="taxon:1101106" WGS CAKAIV010000001-CAKAIV010000010 // LOCUS CAKAJR010000000 62 rc DNA linear INV 30-SEP-2021 DEFINITION Mesoligia furuncula, whole genome shotgun sequencing project. ACCESSION CAKAJR000000000 VERSION CAKAJR000000000.1 DBLINK BioProject: PRJEB47754 BioSample: SAMEA7701289 KEYWORDS WGS. SOURCE Mesoligia furuncula ORGANISM Mesoligia furuncula Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Mesoligia. REFERENCE 1 (bases 1 to 62) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Mesoligia furuncula whole genome shotgun (WGS) project has the project accession CAKAJR000000000. This version of the project (01) has the accession number CAKAJR010000000, and consists of sequences CAKAJR010000001-CAKAJR010000062. The assembly ilMesFuru1.1 is based on 24x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Linkage has been observed in the Hi-C map between chromosomes 8 and 25. This linkage is specific, such that an alternative karyotype could be constructed {8A:8B,25A:25B} and {8B:25A,8A,25B}. No support for this fusion between chromosome 8 and 25 can be seen in the PacBio reads which derive from a different sample to the Hi-C. FEATURES Location/Qualifiers source 1..62 /organism="Mesoligia furuncula" /mol_type="genomic DNA" /db_xref="taxon:997551" WGS CAKAJR010000001-CAKAJR010000062 // LOCUS CAKAJK010000000 24 rc DNA linear INV 30-SEP-2021 DEFINITION Haliclystus octoradiatus, whole genome shotgun sequencing project. ACCESSION CAKAJK000000000 VERSION CAKAJK000000000.1 DBLINK BioProject: PRJEB47765 BioSample: SAMEA7522858 KEYWORDS WGS. SOURCE Haliclystus octoradiatus ORGANISM Haliclystus octoradiatus Eukaryota; Metazoa; Cnidaria; Staurozoa; Stauromedusae; Myostaurida; Haliclystidae; Haliclystus. REFERENCE 1 (bases 1 to 24) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Haliclystus octoradiatus whole genome shotgun (WGS) project has the project accession CAKAJK000000000. This version of the project (01) has the accession number CAKAJK010000000, and consists of sequences CAKAJK010000001-CAKAJK010000024. The assembly jrHalOcto1.1 is based on 68x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..24 /organism="Haliclystus octoradiatus" /mol_type="genomic DNA" /db_xref="taxon:313498" WGS CAKAJK010000001-CAKAJK010000024 // LOCUS CAKAJL010000000 12 rc DNA linear PLN 30-SEP-2021 DEFINITION Malus domestica, whole genome shotgun sequencing project. ACCESSION CAKAJL000000000 VERSION CAKAJL000000000.1 DBLINK BioProject: PRJEB47756 BioSample: SAMEA9197674 KEYWORDS WGS. SOURCE Malus domestica (apple) ORGANISM Malus domestica Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus. REFERENCE 1 (bases 1 to 12) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Malus domestica whole genome shotgun (WGS) project has the project accession CAKAJL000000000. This version of the project (01) has the accession number CAKAJL010000000, and consists of sequences CAKAJL010000001-CAKAJL010000012. The assembly drMalDome11.1 is based on 26x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds are named by synteny based on Malus domestica (apple) GCA_004115385.1. Shared sequences between chromosomes are visible in the Hi-C map in agreement with the findings of https://doi.org/10.1038/ng.654. Evidence of inversions between haplotypes from the Hi-C map in chromosome 1 1.28-7.73mb and chromosome 5 14.88-16.83mb. FEATURES Location/Qualifiers source 1..12 /organism="Malus domestica" /mol_type="genomic DNA" /db_xref="taxon:3750" WGS CAKAJL010000001-CAKAJL010000012 // LOCUS CAKAJT010000000 9 rc DNA linear PLN 30-SEP-2021 DEFINITION Malus domestica, whole genome shotgun sequencing project. ACCESSION CAKAJT000000000 VERSION CAKAJT000000000.1 DBLINK BioProject: PRJEB47758 BioSample: SAMEA8717325 KEYWORDS WGS. SOURCE Malus domestica (apple) ORGANISM Malus domestica Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus. REFERENCE 1 (bases 1 to 9) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Malus domestica whole genome shotgun (WGS) project has the project accession CAKAJT000000000. This version of the project (01) has the accession number CAKAJT010000000, and consists of sequences CAKAJT010000001-CAKAJT010000009. The assembly drMalDome5.1 is based on 25x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds are named by synteny based on Malus domestica (apple) GCA_004115385.1. From the Hi-C data, inversions between haplotypes can be seen on chromosome 4 11.13-14.86mb, chromosome 6 13.34-17.21mb, chromosome 11 22.9-24.24mb and 30.06-32.57mb, chromosome 12 10.9-11.98mb, chromosome 13 34-37mb. FEATURES Location/Qualifiers source 1..9 /organism="Malus domestica" /mol_type="genomic DNA" /db_xref="taxon:3750" WGS CAKAJT010000001-CAKAJT010000009 // LOCUS CAKAJW010000000 12 rc DNA linear INV 30-SEP-2021 DEFINITION Xestia c-nigrum, whole genome shotgun sequencing project. ACCESSION CAKAJW000000000 VERSION CAKAJW000000000.1 DBLINK BioProject: PRJEB47753 BioSample: SAMEA8239458 KEYWORDS WGS. SOURCE Xestia c-nigrum (spotted cutworm) ORGANISM Xestia c-nigrum Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Noctuinae; Noctuini; Xestia. REFERENCE 1 (bases 1 to 12) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Xestia c-nigrum whole genome shotgun (WGS) project has the project accession CAKAJW000000000. This version of the project (01) has the accession number CAKAJW010000000, and consists of sequences CAKAJW010000001-CAKAJW010000012. The assembly ilXesCnig1.1 is based on 35x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..12 /organism="Xestia c-nigrum" /mol_type="genomic DNA" /db_xref="taxon:987431" WGS CAKAJW010000001-CAKAJW010000012 // LOCUS CAKAIU010000000 14 rc DNA linear INV 30-SEP-2021 DEFINITION Cheilosia vulpina, whole genome shotgun sequencing project. ACCESSION CAKAIU000000000 VERSION CAKAIU000000000.1 DBLINK BioProject: PRJEB47738 BioSample: SAMEA7746587 KEYWORDS WGS. SOURCE Cheilosia vulpina ORGANISM Cheilosia vulpina Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Syrphoidea; Syrphidae; Eristalinae; Rhingiini; Cheilosia. REFERENCE 1 (bases 1 to 14) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Cheilosia vulpina whole genome shotgun (WGS) project has the project accession CAKAIU000000000. This version of the project (01) has the accession number CAKAIU010000000, and consists of sequences CAKAIU010000001-CAKAIU010000014. The assembly idCheVulp2.1 is based on 51x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..14 /organism="Cheilosia vulpina" /mol_type="genomic DNA" /db_xref="taxon:273409" WGS CAKAIU010000001-CAKAIU010000014 // LOCUS CAKAJY010000000 4 rc DNA linear INV 30-SEP-2021 DEFINITION Emmelina monodactyla, whole genome shotgun sequencing project. ACCESSION CAKAJY000000000 VERSION CAKAJY000000000.1 DBLINK BioProject: PRJEB47749 BioSample: SAMEA8603203 KEYWORDS WGS. SOURCE Emmelina monodactyla (morning-glory plume moth) ORGANISM Emmelina monodactyla Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pterophoroidea; Pterophoridae; Pterophorinae; Emmelina. REFERENCE 1 (bases 1 to 4) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Emmelina monodactyla whole genome shotgun (WGS) project has the project accession CAKAJY000000000. This version of the project (01) has the accession number CAKAJY010000000, and consists of sequences CAKAJY010000001-CAKAJY010000004. The assembly ilEmmMono1.1 is based on 38x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..4 /organism="Emmelina monodactyla" /mol_type="genomic DNA" /db_xref="taxon:467774" WGS CAKAJY010000001-CAKAJY010000004 // LOCUS CAJZCT010000000 659 rc DNA linear INV 24-SEP-2021 DEFINITION Eilema sororculum, whole genome shotgun sequencing project. ACCESSION CAJZCT000000000 VERSION CAJZCT000000000.1 DBLINK BioProject: PRJEB47352 BioSample: SAMEA7631555 KEYWORDS WGS. SOURCE Eilema sororculum ORGANISM Eilema sororculum Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Erebidae; Arctiinae; Eilema. REFERENCE 1 (bases 1 to 659) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (06-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Eilema sororculum whole genome shotgun (WGS) project has the project accession CAJZCT000000000. This version of the project (01) has the accession number CAJZCT010000000, and consists of sequences CAJZCT010000001-CAJZCT010000659. The assembly ilEilSoro1.1 is based on 43x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..659 /organism="Eilema sororculum" /mol_type="genomic DNA" /db_xref="taxon:987424" WGS CAJZCT010000001-CAJZCT010000659 // LOCUS CAJHWU020000000 252 rc DNA linear INV 24-SEP-2021 DEFINITION Vanessa atalanta, whole genome shotgun sequencing project. ACCESSION CAJHWU000000000 VERSION CAJHWU000000000.2 DBLINK BioProject: PRJEB41955 BioSample: SAMEA7523145 KEYWORDS WGS. SOURCE Vanessa atalanta (red admiral) ORGANISM Vanessa atalanta Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Nymphalinae; Vanessa. REFERENCE 1 (bases 1 to 252) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (14-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 252) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (09-SEP-2021) SC, Wellcome Sanger Institute, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT On Sep 28, 2021 this sequence version replaced CAJHWU000000000.1. The Vanessa atalanta whole genome shotgun (WGS) project has the project accession CAJHWU000000000. This version of the project (02) has the accession number CAJHWU020000000, and consists of sequences CAJHWU020000001-CAJHWU020000252. The assembly ilVanAtal1.2 is based on 34x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..252 /organism="Vanessa atalanta" /mol_type="genomic DNA" /db_xref="taxon:42275" WGS CAJHWU020000001-CAJHWU020000252 // LOCUS CAJHWX020000000 109 rc DNA linear INV 24-SEP-2021 DEFINITION Vanessa atalanta, whole genome shotgun sequencing project. ACCESSION CAJHWX000000000 VERSION CAJHWX000000000.2 DBLINK BioProject: PRJEB41956 BioSample: SAMEA7523145 KEYWORDS WGS. SOURCE Vanessa atalanta (red admiral) ORGANISM Vanessa atalanta Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Nymphalinae; Vanessa. REFERENCE 1 (bases 1 to 109) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (14-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 109) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (09-SEP-2021) SC, Wellcome Sanger Institute, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT On Sep 28, 2021 this sequence version replaced CAJHWX000000000.1. The Vanessa atalanta whole genome shotgun (WGS) project has the project accession CAJHWX000000000. This version of the project (02) has the accession number CAJHWX020000000, and consists of sequences CAJHWX020000001-CAJHWX020000109. The assembly ilVanAtal1.2 is based on 34x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..109 /organism="Vanessa atalanta" /mol_type="genomic DNA" /db_xref="taxon:42275" WGS CAJHWX020000001-CAJHWX020000109 // LOCUS CAJZCU010000000 10 rc DNA linear INV 24-SEP-2021 DEFINITION Eilema sororculum, whole genome shotgun sequencing project. ACCESSION CAJZCU000000000 VERSION CAJZCU000000000.1 DBLINK BioProject: PRJEB47353 BioSample: SAMEA7631555 KEYWORDS WGS. SOURCE Eilema sororculum ORGANISM Eilema sororculum Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Erebidae; Arctiinae; Eilema. REFERENCE 1 (bases 1 to 10) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (06-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Eilema sororculum whole genome shotgun (WGS) project has the project accession CAJZCU000000000. This version of the project (01) has the accession number CAJZCU010000000, and consists of sequences CAJZCU010000001-CAJZCU010000010. The assembly ilEilSoro1.1 is based on 43x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..10 /organism="Eilema sororculum" /mol_type="genomic DNA" /db_xref="taxon:987424" WGS CAJZCU010000001-CAJZCU010000010 // LOCUS CAJVDD010000000 895 rc DNA linear VRT 21-SEP-2021 DEFINITION Thunnus maccoyii, whole genome shotgun sequencing project. ACCESSION CAJVDD000000000 VERSION CAJVDD000000000.1 DBLINK BioProject: PRJEB46020 BioSample: SAMEA8654747 KEYWORDS WGS. SOURCE Thunnus maccoyii (southern bluefin tuna) ORGANISM Thunnus maccoyii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Pelagiaria; Scombriformes; Scombridae; Thunnus. REFERENCE 1 (bases 1 to 895) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (01-JUL-2021) SC, Wellcome Sanger Institute, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Thunnus maccoyii whole genome shotgun (WGS) project has the project accession CAJVDD000000000. This version of the project (01) has the accession number CAJVDD010000000, and consists of sequences CAJVDD010000001-CAJVDD010000895. The assembly fThuMac1.1 is based on 46x PacBio data, 46x 10X Genomics Chromium data, BioNano data and Arima Hi-C data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Chromosome 1 contains a large inversion between sister chromatids at approximately 2.7-9.5Mb. FEATURES Location/Qualifiers source 1..895 /organism="Thunnus maccoyii" /mol_type="genomic DNA" /db_xref="taxon:8240" WGS CAJVDD010000001-CAJVDD010000895 // LOCUS CAJZLI010000000 1192 rc DNA linear INV 18-SEP-2021 DEFINITION Platycheirus albimanus, whole genome shotgun sequencing project. ACCESSION CAJZLI000000000 VERSION CAJZLI000000000.1 DBLINK BioProject: PRJEB47513 BioSample: SAMEA7520157 Sequence Read Archive: ERR6054919, ERR6054920, ERR6054921, ERR6054922, ERR6054923, ERR6606791, ERR6606792 KEYWORDS WGS. SOURCE Platycheirus albimanus ORGANISM Platycheirus albimanus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Syrphoidea; Syrphidae; Syrphinae; Melanostomini; Platycheirus. REFERENCE 1 (bases 1 to 1192) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (13-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Platycheirus albimanus whole genome shotgun (WGS) project has the project accession CAJZLI000000000. This version of the project (01) has the accession number CAJZLI010000000, and consists of sequences CAJZLI010000001-CAJZLI010001192. The assembly idPlaAlba1.1 is based on 50x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. The very large repetitive region of chromosome 1, spanning 119.95mb-193.61mb is less certain than the rest of the assembly. It has been assembled to best fit the Hi-C data. FEATURES Location/Qualifiers source 1..1192 /organism="Platycheirus albimanus" /mol_type="genomic DNA" /db_xref="taxon:414846" WGS CAJZLI010000001-CAJZLI010001192 // LOCUS CAJZLQ010000000 1200 rc DNA linear INV 18-SEP-2021 DEFINITION Bellardia pandia, whole genome shotgun sequencing project. ACCESSION CAJZLQ000000000 VERSION CAJZLQ000000000.1 DBLINK BioProject: PRJEB47512 BioSample: SAMEA7746779 KEYWORDS WGS. SOURCE Bellardia pandia ORGANISM Bellardia pandia Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Oestroidea; Calliphoridae; Calliphorinae; Bellardia. REFERENCE 1 (bases 1 to 1200) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (13-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Bellardia pandia whole genome shotgun (WGS) project has the project accession CAJZLQ000000000. This version of the project (01) has the accession number CAJZLQ010000000, and consists of sequences CAJZLQ010000001-CAJZLQ010001200. The assembly idBelPand1.1 is based on 54x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Several repetitive scaffolds remain unassigned to chromosomes. These are likely to belong to the X chromosome but a definitive placement cannot be made with current methods. FEATURES Location/Qualifiers source 1..1200 /organism="Bellardia pandia" /mol_type="genomic DNA" /db_xref="taxon:2795671" WGS CAJZLQ010000001-CAJZLQ010001200 // LOCUS CAJZLB010000000 2355 rc DNA linear PLN 18-SEP-2021 DEFINITION Malus sylvestris, whole genome shotgun sequencing project. ACCESSION CAJZLB000000000 VERSION CAJZLB000000000.1 DBLINK BioProject: PRJEB47503 BioSample: SAMEA9197672 KEYWORDS WGS. SOURCE Malus sylvestris ORGANISM Malus sylvestris Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus. REFERENCE 1 (bases 1 to 2355) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (13-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Malus sylvestris whole genome shotgun (WGS) project has the project accession CAJZLB000000000. This version of the project (01) has the accession number CAJZLB010000000, and consists of sequences CAJZLB010000001-CAJZLB010002355. The assembly drMalSylv7.1 is based on 15x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds are named by synteny based on Malus domestica (apple) GCA_004115385.1. Shared sequences between chromosomes are visible in the Hi-C map in agreement with the findings of https://doi.org/10.1038/ng.654 for Malus domestica. The Hi-C map provides evidence of inversions between haplotypes in chromosome 2 - 24.82-26.19Mb, and chromosome 11 - 17.06-19.05Mb. There are several scaffolds that it was possible to localize to a chromosome but not place, these have been labelled as unloc. Two of the largest unlocalised scaffolds -SUPER_4_unloc_1 and SUPER_14_unloc_1 - appear to be larger haplotypes of two specific loci; Chromosome 4 at 26.13-26.31Mb and Chromosome 14 at 782kb respectively. From the Hi-C it appears that these loci currently represent the shorter haplotype. As there is some uncertainty over these unloc scaffolds they have been left in the primary assembly. FEATURES Location/Qualifiers source 1..2355 /organism="Malus sylvestris" /mol_type="genomic DNA" /db_xref="taxon:3752" WGS CAJZLB010000001-CAJZLB010002355 // LOCUS CAJZHQ010000000 600 rc DNA linear PLN 18-SEP-2021 DEFINITION Malus domestica, whole genome shotgun sequencing project. ACCESSION CAJZHQ000000000 VERSION CAJZHQ000000000.1 DBLINK BioProject: PRJEB47506 BioSample: SAMEA9197673 KEYWORDS WGS. SOURCE Malus domestica (apple) ORGANISM Malus domestica Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus. REFERENCE 1 (bases 1 to 600) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (13-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Malus domestica whole genome shotgun (WGS) project has the project accession CAJZHQ000000000. This version of the project (01) has the accession number CAJZHQ010000000, and consists of sequences CAJZHQ010000001-CAJZHQ010000600. The assembly drMalDome10.1 is based on 31x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds are named by synteny based on Malus domestica (apple) GCA_004115385.1. Shared sequences between chromosomes are visible in the Hi-C map in agreement with the findings of https://doi.org/10.1038/ng.654. Evidence of inversions between haplotypes from the Hi-C map in chromosome 4 21.72-23.32mb, chromosome 5 14.44-16.4mb and chromosome 11 30.76-33.27. FEATURES Location/Qualifiers source 1..600 /organism="Malus domestica" /mol_type="genomic DNA" /db_xref="taxon:3750" WGS CAJZHQ010000001-CAJZHQ010000600 // LOCUS CAJZHO010000000 949 rc DNA linear INV 18-SEP-2021 DEFINITION Spilarctia lutea, whole genome shotgun sequencing project. ACCESSION CAJZHO000000000 VERSION CAJZHO000000000.1 DBLINK BioProject: PRJEB47510 BioSample: SAMEA7631557 KEYWORDS WGS. SOURCE Spilarctia lutea ORGANISM Spilarctia lutea Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Erebidae; Arctiinae; Spilarctia. REFERENCE 1 (bases 1 to 949) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (13-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Spilarctia lutea whole genome shotgun (WGS) project has the project accession CAJZHO000000000. This version of the project (01) has the accession number CAJZHO010000000, and consists of sequences CAJZHO010000001-CAJZHO010000949. The assembly ilSpiLutu1.1 is based on 28x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..949 /organism="Spilarctia lutea" /mol_type="genomic DNA" /db_xref="taxon:875881" WGS CAJZHO010000001-CAJZHO010000949 // LOCUS CAJZHN010000000 1720 rc DNA linear INV 18-SEP-2021 DEFINITION Sacculina carcini, whole genome shotgun sequencing project. ACCESSION CAJZHN000000000 VERSION CAJZHN000000000.1 DBLINK BioProject: PRJEB47497 BioSample: SAMEA7522840 Sequence Read Archive: ERR6286729, ERR6286730, ERR6286731, ERR6286732, ERR6286733, ERR6412044 KEYWORDS WGS. SOURCE Sacculina carcini ORGANISM Sacculina carcini Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Hexanauplia; Cirripedia; Rhizocephala; Sacculinidae; Sacculina. REFERENCE 1 (bases 1 to 1720) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (13-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Sacculina carcini whole genome shotgun (WGS) project has the project accession CAJZHN000000000. This version of the project (01) has the accession number CAJZHN010000000, and consists of sequences CAJZHN010000001-CAJZHN010001720. The assembly qxSacCarc1.1 is based on 58x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..1720 /organism="Sacculina carcini" /mol_type="genomic DNA" /db_xref="taxon:51650" WGS CAJZHN010000001-CAJZHN010001720 // LOCUS CAJZKA010000000 227 rc DNA linear INV 18-SEP-2021 DEFINITION Ancistrocerus nigricornis, whole genome shotgun sequencing project. ACCESSION CAJZKA000000000 VERSION CAJZKA000000000.1 DBLINK BioProject: PRJEB47508 BioSample: SAMEA7746762 KEYWORDS WGS. SOURCE Ancistrocerus nigricornis ORGANISM Ancistrocerus nigricornis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Vespoidea; Vespidae; Eumeninae; Ancistrocerus. REFERENCE 1 (bases 1 to 227) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (13-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Ancistrocerus nigricornis whole genome shotgun (WGS) project has the project accession CAJZKA000000000. This version of the project (01) has the accession number CAJZKA010000000, and consists of sequences CAJZKA010000001-CAJZKA010000227. The assembly iyAncNigr1.1 is based on 69x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. We are uncertain of the order and orientation of scaffolds on chromosome 1 between 15.0-21.1mb, although Hi-C shows that they localise to this repetitive centromeric/per-centromeric region. FEATURES Location/Qualifiers source 1..227 /organism="Ancistrocerus nigricornis" /mol_type="genomic DNA" /db_xref="taxon:76990" WGS CAJZKA010000001-CAJZKA010000227 // LOCUS CAJZHU010000000 68 rc DNA linear INV 18-SEP-2021 DEFINITION Bellardia pandia, whole genome shotgun sequencing project. ACCESSION CAJZHU000000000 VERSION CAJZHU000000000.1 DBLINK BioProject: PRJEB47511 BioSample: SAMEA7746779 KEYWORDS WGS. SOURCE Bellardia pandia ORGANISM Bellardia pandia Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Oestroidea; Calliphoridae; Calliphorinae; Bellardia. REFERENCE 1 (bases 1 to 68) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (13-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Bellardia pandia whole genome shotgun (WGS) project has the project accession CAJZHU000000000. This version of the project (01) has the accession number CAJZHU010000000, and consists of sequences CAJZHU010000001-CAJZHU010000068. The assembly idBelPand1.1 is based on 54x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Several repetitive scaffolds remain unassigned to chromosomes. These are likely to belong to the X chromosome but a definitive placement cannot be made with current methods. FEATURES Location/Qualifiers source 1..68 /organism="Bellardia pandia" /mol_type="genomic DNA" /db_xref="taxon:2795671" WGS CAJZHU010000001-CAJZHU010000068 // LOCUS CAJZLN010000000 9 rc DNA linear PLN 18-SEP-2021 DEFINITION Malus domestica, whole genome shotgun sequencing project. ACCESSION CAJZLN000000000 VERSION CAJZLN000000000.1 DBLINK BioProject: PRJEB47505 BioSample: SAMEA9197673 KEYWORDS WGS. SOURCE Malus domestica (apple) ORGANISM Malus domestica Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus. REFERENCE 1 (bases 1 to 9) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (13-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Malus domestica whole genome shotgun (WGS) project has the project accession CAJZLN000000000. This version of the project (01) has the accession number CAJZLN010000000, and consists of sequences CAJZLN010000001-CAJZLN010000009. The assembly drMalDome10.1 is based on 31x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds are named by synteny based on Malus domestica (apple) GCA_004115385.1. Shared sequences between chromosomes are visible in the Hi-C map in agreement with the findings of https://doi.org/10.1038/ng.654. Evidence of inversions between haplotypes from the Hi-C map in chromosome 4 21.72-23.32mb, chromosome 5 14.44-16.4mb and chromosome 11 30.76-33.27. FEATURES Location/Qualifiers source 1..9 /organism="Malus domestica" /mol_type="genomic DNA" /db_xref="taxon:3750" WGS CAJZLN010000001-CAJZLN010000009 // LOCUS CAJZLR010000000 91 rc DNA linear INV 18-SEP-2021 DEFINITION Platycheirus albimanus, whole genome shotgun sequencing project. ACCESSION CAJZLR000000000 VERSION CAJZLR000000000.1 DBLINK BioProject: PRJEB47514 BioSample: SAMEA7520157 Sequence Read Archive: ERR6054919, ERR6054920, ERR6054921, ERR6054922, ERR6054923, ERR6606791, ERR6606792 KEYWORDS WGS. SOURCE Platycheirus albimanus ORGANISM Platycheirus albimanus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Syrphoidea; Syrphidae; Syrphinae; Melanostomini; Platycheirus. REFERENCE 1 (bases 1 to 91) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (13-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Platycheirus albimanus whole genome shotgun (WGS) project has the project accession CAJZLR000000000. This version of the project (01) has the accession number CAJZLR010000000, and consists of sequences CAJZLR010000001-CAJZLR010000091. The assembly idPlaAlba1.1 is based on 50x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. The very large repetitive region of chromosome 1, spanning 119.95mb-193.61mb is less certain than the rest of the assembly. It has been assembled to best fit the Hi-C data. FEATURES Location/Qualifiers source 1..91 /organism="Platycheirus albimanus" /mol_type="genomic DNA" /db_xref="taxon:414846" WGS CAJZLR010000001-CAJZLR010000091 // LOCUS CAJZHC010000000 9 rc DNA linear INV 18-SEP-2021 DEFINITION Spilarctia lutea, whole genome shotgun sequencing project. ACCESSION CAJZHC000000000 VERSION CAJZHC000000000.1 DBLINK BioProject: PRJEB47509 BioSample: SAMEA7631557 KEYWORDS WGS. SOURCE Spilarctia lutea ORGANISM Spilarctia lutea Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Erebidae; Arctiinae; Spilarctia. REFERENCE 1 (bases 1 to 9) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (13-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Spilarctia lutea whole genome shotgun (WGS) project has the project accession CAJZHC000000000. This version of the project (01) has the accession number CAJZHC010000000, and consists of sequences CAJZHC010000001-CAJZHC010000009. The assembly ilSpiLutu1.1 is based on 28x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..9 /organism="Spilarctia lutea" /mol_type="genomic DNA" /db_xref="taxon:875881" WGS CAJZHC010000001-CAJZHC010000009 // LOCUS CAJZIA010000000 17 rc DNA linear INV 18-SEP-2021 DEFINITION Sacculina carcini, whole genome shotgun sequencing project. ACCESSION CAJZIA000000000 VERSION CAJZIA000000000.1 DBLINK BioProject: PRJEB47498 BioSample: SAMEA7522840 Sequence Read Archive: ERR6286729, ERR6286730, ERR6286731, ERR6286732, ERR6286733, ERR6412044 KEYWORDS WGS. SOURCE Sacculina carcini ORGANISM Sacculina carcini Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Hexanauplia; Cirripedia; Rhizocephala; Sacculinidae; Sacculina. REFERENCE 1 (bases 1 to 17) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (13-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Sacculina carcini whole genome shotgun (WGS) project has the project accession CAJZIA000000000. This version of the project (01) has the accession number CAJZIA010000000, and consists of sequences CAJZIA010000001-CAJZIA010000017. The assembly qxSacCarc1.1 is based on 58x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..17 /organism="Sacculina carcini" /mol_type="genomic DNA" /db_xref="taxon:51650" WGS CAJZIA010000001-CAJZIA010000017 // LOCUS CAJZHM010000000 16 rc DNA linear PLN 18-SEP-2021 DEFINITION Malus sylvestris, whole genome shotgun sequencing project. ACCESSION CAJZHM000000000 VERSION CAJZHM000000000.1 DBLINK BioProject: PRJEB47504 BioSample: SAMEA9197672 KEYWORDS WGS. SOURCE Malus sylvestris ORGANISM Malus sylvestris Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus. REFERENCE 1 (bases 1 to 16) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (13-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Malus sylvestris whole genome shotgun (WGS) project has the project accession CAJZHM000000000. This version of the project (01) has the accession number CAJZHM010000000, and consists of sequences CAJZHM010000001-CAJZHM010000016. The assembly drMalSylv7.1 is based on 15x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds are named by synteny based on Malus domestica (apple) GCA_004115385.1. Shared sequences between chromosomes are visible in the Hi-C map in agreement with the findings of https://doi.org/10.1038/ng.654 for Malus domestica. The Hi-C map provides evidence of inversions between haplotypes in chromosome 2 - 24.82-26.19Mb, and chromosome 11 - 17.06-19.05Mb. There are several scaffolds that it was possible to localize to a chromosome but not place, these have been labelled as unloc. Two of the largest unlocalised scaffolds -SUPER_4_unloc_1 and SUPER_14_unloc_1 - appear to be larger haplotypes of two specific loci; Chromosome 4 at 26.13-26.31Mb and Chromosome 14 at 782kb respectively. From the Hi-C it appears that these loci currently represent the shorter haplotype. As there is some uncertainty over these unloc scaffolds they have been left in the primary assembly. FEATURES Location/Qualifiers source 1..16 /organism="Malus sylvestris" /mol_type="genomic DNA" /db_xref="taxon:3752" WGS CAJZHM010000001-CAJZHM010000016 // LOCUS CAJVDC010000000 33 rc DNA linear VRT 21-SEP-2021 DEFINITION Thunnus maccoyii, whole genome shotgun sequencing project. ACCESSION CAJVDC000000000 VERSION CAJVDC000000000.1 DBLINK BioProject: PRJEB46021 BioSample: SAMEA8654747 KEYWORDS WGS. SOURCE Thunnus maccoyii (southern bluefin tuna) ORGANISM Thunnus maccoyii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Pelagiaria; Scombriformes; Scombridae; Thunnus. REFERENCE 1 (bases 1 to 33) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (01-JUL-2021) SC, Wellcome Sanger Institute, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Thunnus maccoyii whole genome shotgun (WGS) project has the project accession CAJVDC000000000. This version of the project (01) has the accession number CAJVDC010000000, and consists of sequences CAJVDC010000001-CAJVDC010000033. The assembly fThuMac1.1 is based on 46x PacBio data, 46x 10X Genomics Chromium data, BioNano data and Arima Hi-C data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Chromosome 1 contains a large inversion between sister chromatids at approximately 2.7-9.5Mb. FEATURES Location/Qualifiers source 1..33 /organism="Thunnus maccoyii" /mol_type="genomic DNA" /db_xref="taxon:8240" WGS CAJVDC010000001-CAJVDC010000033 // LOCUS CAJZBH010000000 5712 rc DNA linear INV 11-SEP-2021 DEFINITION Coremacera marginata, whole genome shotgun sequencing project. ACCESSION CAJZBH000000000 VERSION CAJZBH000000000.1 DBLINK BioProject: PRJEB47369 BioSample: SAMEA7521524 KEYWORDS WGS. SOURCE Coremacera marginata ORGANISM Coremacera marginata Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Sciomyzoidea; Sciomyzidae; Coremacera. REFERENCE 1 (bases 1 to 5712) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Coremacera marginata whole genome shotgun (WGS) project has the project accession CAJZBH000000000. This version of the project (01) has the accession number CAJZBH010000000, and consists of sequences CAJZBH010000001-CAJZBH010005712. The assembly idCorMarg1.1 is based on 25x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..5712 /organism="Coremacera marginata" /mol_type="genomic DNA" /db_xref="taxon:1226616" WGS CAJZBH010000001-CAJZBH010005712 // LOCUS CAJZAY010000000 640 rc DNA linear VRT 11-SEP-2021 DEFINITION Thunnus albacares, whole genome shotgun sequencing project. ACCESSION CAJZAY000000000 VERSION CAJZAY000000000.1 DBLINK BioProject: PRJEB47266 BioSample: SAMEA8654749 KEYWORDS WGS. SOURCE Thunnus albacares (yellowfin tuna) ORGANISM Thunnus albacares Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Pelagiaria; Scombriformes; Scombridae; Thunnus. REFERENCE 1 (bases 1 to 640) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (31-AUG-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Thunnus albacares whole genome shotgun (WGS) project has the project accession CAJZAY000000000. This version of the project (01) has the accession number CAJZAY010000000, and consists of sequences CAJZAY010000001-CAJZAY010000640. The assembly fThuAlb1.1 is based on 45x PacBio data, 42x 10X Genomics Chromium data, and Arima Hi-C data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..640 /organism="Thunnus albacares" /mol_type="genomic DNA" /db_xref="taxon:8236" WGS CAJZAY010000001-CAJZAY010000640 // LOCUS CAJZBV010000000 521 rc DNA linear INV 11-SEP-2021 DEFINITION Melanostoma mellinum, whole genome shotgun sequencing project. ACCESSION CAJZBV000000000 VERSION CAJZBV000000000.1 DBLINK BioProject: PRJEB47342 BioSample: SAMEA7520051 KEYWORDS WGS. SOURCE Melanostoma mellinum ORGANISM Melanostoma mellinum Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Syrphoidea; Syrphidae; Syrphinae; Melanostomini; Melanostoma. REFERENCE 1 (bases 1 to 521) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Melanostoma mellinum whole genome shotgun (WGS) project has the project accession CAJZBV000000000. This version of the project (01) has the accession number CAJZBV010000000, and consists of sequences CAJZBV010000001-CAJZBV010000521. The assembly idMelMell2.1 is based on 26x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..521 /organism="Melanostoma mellinum" /mol_type="genomic DNA" /db_xref="taxon:653684" WGS CAJZBV010000001-CAJZBV010000521 // LOCUS CAJZBY010000000 910 rc DNA linear INV 11-SEP-2021 DEFINITION Thecocarcelia acutangulata, whole genome shotgun sequencing project. ACCESSION CAJZBY000000000 VERSION CAJZBY000000000.1 DBLINK BioProject: PRJEB47350 BioSample: SAMEA7746598 KEYWORDS WGS. SOURCE Thecocarcelia acutangulata ORGANISM Thecocarcelia acutangulata Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Oestroidea; Tachinidae; Exoristinae; Eryciini; Thecocarcelia. REFERENCE 1 (bases 1 to 910) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Thecocarcelia acutangulata whole genome shotgun (WGS) project has the project accession CAJZBY000000000. This version of the project (01) has the accession number CAJZBY010000000, and consists of sequences CAJZBY010000001-CAJZBY010000910. The assembly idTheAcut1.1 is based on 40x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..910 /organism="Thecocarcelia acutangulata" /mol_type="genomic DNA" /db_xref="taxon:1918310" WGS CAJZBY010000001-CAJZBY010000910 // LOCUS CAJZBP010000000 590 rc DNA linear INV 11-SEP-2021 DEFINITION Eilema depressum, whole genome shotgun sequencing project. ACCESSION CAJZBP000000000 VERSION CAJZBP000000000.1 DBLINK BioProject: PRJEB47359 BioSample: SAMEA7746611 KEYWORDS WGS. SOURCE Eilema depressum ORGANISM Eilema depressum Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Erebidae; Arctiinae; Eilema. REFERENCE 1 (bases 1 to 590) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Eilema depressum whole genome shotgun (WGS) project has the project accession CAJZBP000000000. This version of the project (01) has the accession number CAJZBP010000000, and consists of sequences CAJZBP010000001-CAJZBP010000590. The assembly ilEilDepe1.1 is based on 54x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..590 /organism="Eilema depressum" /mol_type="genomic DNA" /db_xref="taxon:987419" WGS CAJZBP010000001-CAJZBP010000590 // LOCUS CAJZBI010000000 139 rc DNA linear INV 11-SEP-2021 DEFINITION Agrochola circellaris, whole genome shotgun sequencing project. ACCESSION CAJZBI000000000 VERSION CAJZBI000000000.1 DBLINK BioProject: PRJEB47363 BioSample: SAMEA8603201 KEYWORDS WGS. SOURCE Agrochola circellaris ORGANISM Agrochola circellaris Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Agrochola. REFERENCE 1 (bases 1 to 139) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Agrochola circellaris whole genome shotgun (WGS) project has the project accession CAJZBI000000000. This version of the project (01) has the accession number CAJZBI010000000, and consists of sequences CAJZBI010000001-CAJZBI010000139. The assembly ilAgrCirc1.1 is based on 33x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..139 /organism="Agrochola circellaris" /mol_type="genomic DNA" /db_xref="taxon:987866" WGS CAJZBI010000001-CAJZBI010000139 // LOCUS CAJZBE010000000 369 rc DNA linear INV 11-SEP-2021 DEFINITION Hydraecia micacea, whole genome shotgun sequencing project. ACCESSION CAJZBE000000000 VERSION CAJZBE000000000.1 DBLINK BioProject: PRJEB47368 BioSample: SAMEA8603188 KEYWORDS WGS. SOURCE Hydraecia micacea (rosy rustic) ORGANISM Hydraecia micacea Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Noctuinae; Apameini; Hydraecia. REFERENCE 1 (bases 1 to 369) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Hydraecia micacea whole genome shotgun (WGS) project has the project accession CAJZBE000000000. This version of the project (01) has the accession number CAJZBE010000000, and consists of sequences CAJZBE010000001-CAJZBE010000369. The assembly ilHydMica1.1 is based on 30x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..369 /organism="Hydraecia micacea" /mol_type="genomic DNA" /db_xref="taxon:214171" WGS CAJZBE010000001-CAJZBE010000369 // LOCUS CAJZBZ010000000 3981 rc DNA linear INV 11-SEP-2021 DEFINITION Sesia apiformis, whole genome shotgun sequencing project. ACCESSION CAJZBZ000000000 VERSION CAJZBZ000000000.1 DBLINK BioProject: PRJEB47346 BioSample: SAMEA7701281 KEYWORDS WGS. SOURCE Sesia apiformis ORGANISM Sesia apiformis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Sesioidea; Sesiidae; Sesiinae; Sesiini; Sesia. REFERENCE 1 (bases 1 to 3981) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Sesia apiformis whole genome shotgun (WGS) project has the project accession CAJZBZ000000000. This version of the project (01) has the accession number CAJZBZ010000000, and consists of sequences CAJZBZ010000001-CAJZBZ010003981. The assembly ilSesApif2.1 is based on 26x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..3981 /organism="Sesia apiformis" /mol_type="genomic DNA" /db_xref="taxon:748215" WGS CAJZBZ010000001-CAJZBZ010003981 // LOCUS CAJZBK010000000 550 rc DNA linear INV 11-SEP-2021 DEFINITION Agriopis aurantiaria, whole genome shotgun sequencing project. ACCESSION CAJZBK000000000 VERSION CAJZBK000000000.1 DBLINK BioProject: PRJEB47362 BioSample: SAMEA8603214 KEYWORDS WGS. SOURCE Agriopis aurantiaria ORGANISM Agriopis aurantiaria Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Ennominae; Agriopis. REFERENCE 1 (bases 1 to 550) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Agriopis aurantiaria whole genome shotgun (WGS) project has the project accession CAJZBK000000000. This version of the project (01) has the accession number CAJZBK010000000, and consists of sequences CAJZBK010000001-CAJZBK010000550. The assembly ilAgrAura1.1 is based on 35x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..550 /organism="Agriopis aurantiaria" /mol_type="genomic DNA" /db_xref="taxon:104476" WGS CAJZBK010000001-CAJZBK010000550 // LOCUS CAJZBO010000000 1215 rc DNA linear INV 11-SEP-2021 DEFINITION Anoplius nigerrimus, whole genome shotgun sequencing project. ACCESSION CAJZBO000000000 VERSION CAJZBO000000000.1 DBLINK BioProject: PRJEB47349 BioSample: SAMEA7746764 KEYWORDS WGS. SOURCE Anoplius nigerrimus ORGANISM Anoplius nigerrimus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Pompiloidea; Pompilidae; Pompilinae; Anoplius. REFERENCE 1 (bases 1 to 1215) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Anoplius nigerrimus whole genome shotgun (WGS) project has the project accession CAJZBO000000000. This version of the project (01) has the accession number CAJZBO010000000, and consists of sequences CAJZBO010000001-CAJZBO010001215. The assembly iyAnoNige1.1 is based on 29x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..1215 /organism="Anoplius nigerrimus" /mol_type="genomic DNA" /db_xref="taxon:1667466" WGS CAJZBO010000001-CAJZBO010001215 // LOCUS CAJZBJ010000000 165 rc DNA linear INV 11-SEP-2021 DEFINITION Eupsilia transversa, whole genome shotgun sequencing project. ACCESSION CAJZBJ000000000 VERSION CAJZBJ000000000.1 DBLINK BioProject: PRJEB47365 BioSample: SAMEA8563699 KEYWORDS WGS. SOURCE Eupsilia transversa (satellite moth) ORGANISM Eupsilia transversa Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Ipimorphinae; Eupsilia. REFERENCE 1 (bases 1 to 165) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Eupsilia transversa whole genome shotgun (WGS) project has the project accession CAJZBJ000000000. This version of the project (01) has the accession number CAJZBJ010000000, and consists of sequences CAJZBJ010000001-CAJZBJ010000165. The assembly ilEupTran1.1 is based on 29x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..165 /organism="Eupsilia transversa" /mol_type="genomic DNA" /db_xref="taxon:116130" WGS CAJZBJ010000001-CAJZBJ010000165 // LOCUS CAJZBD010000000 418 rc DNA linear INV 11-SEP-2021 DEFINITION Harmonia axyridis, whole genome shotgun sequencing project. ACCESSION CAJZBD000000000 VERSION CAJZBD000000000.1 DBLINK BioProject: PRJEB47374 BioSample: SAMEA7520208 KEYWORDS WGS. SOURCE Harmonia axyridis ORGANISM Harmonia axyridis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Coccinellidae; Coccinellinae; Coccinellini; Harmonia. REFERENCE 1 (bases 1 to 418) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Harmonia axyridis whole genome shotgun (WGS) project has the project accession CAJZBD000000000. This version of the project (01) has the accession number CAJZBD010000000, and consists of sequences CAJZBD010000001-CAJZBD010000418. The assembly icHarAxyr1.1 is based on 53x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. 7 curated autosomes and 1 allosome (X) curated for Harmonia axyridis. Some scaffolds remain unplaced due to repetitive content giving ambiguous HiC signal. Large cluster of rDNA sequences placed on X using HiC data only. FEATURES Location/Qualifiers source 1..418 /organism="Harmonia axyridis" /mol_type="genomic DNA" /db_xref="taxon:115357" WGS CAJZBD010000001-CAJZBD010000418 // LOCUS CAJZBM010000000 177 rc DNA linear INV 11-SEP-2021 DEFINITION Ptilodon capucinus, whole genome shotgun sequencing project. ACCESSION CAJZBM000000000 VERSION CAJZBM000000000.1 DBLINK BioProject: PRJEB47356 BioSample: SAMEA7746620 KEYWORDS WGS. SOURCE Ptilodon capucinus ORGANISM Ptilodon capucinus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Notodontidae; Ptilodontinae; Ptilodon. REFERENCE 1 (bases 1 to 177) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Ptilodon capucinus whole genome shotgun (WGS) project has the project accession CAJZBM000000000. This version of the project (01) has the accession number CAJZBM010000000, and consists of sequences CAJZBM010000001-CAJZBM010000177. The assembly ilPtiCapc1.1 is based on 55x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..177 /organism="Ptilodon capucinus" /mol_type="genomic DNA" /db_xref="taxon:987449" WGS CAJZBM010000001-CAJZBM010000177 // LOCUS CAJZBF010000000 278 rc DNA linear INV 11-SEP-2021 DEFINITION Membranipora membranacea, whole genome shotgun sequencing project. ACCESSION CAJZBF000000000 VERSION CAJZBF000000000.1 DBLINK BioProject: PRJEB47371 BioSample: SAMEA7536681 KEYWORDS WGS. SOURCE Membranipora membranacea ORGANISM Membranipora membranacea Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Bryozoa; Gymnolaemata; Cheilostomatida; Malacostegina; Membraniporoidea; Membraniporidae; Membranipora. REFERENCE 1 (bases 1 to 278) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Membranipora membranacea whole genome shotgun (WGS) project has the project accession CAJZBF000000000. This version of the project (01) has the accession number CAJZBF010000000, and consists of sequences CAJZBF010000001-CAJZBF010000278. The assembly tzMemMemb1.1 is based on 66x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..278 /organism="Membranipora membranacea" /mol_type="genomic DNA" /db_xref="taxon:95170" WGS CAJZBF010000001-CAJZBF010000278 // LOCUS CAJZBT010000000 407 rc DNA linear INV 11-SEP-2021 DEFINITION Tenthredo notha, whole genome shotgun sequencing project. ACCESSION CAJZBT000000000 VERSION CAJZBT000000000.1 DBLINK BioProject: PRJEB47354 BioSample: SAMEA7746761 KEYWORDS WGS. SOURCE Tenthredo notha ORGANISM Tenthredo notha Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Tenthredinoidea; Tenthredinidae; Tenthredininae; Tenthredo. REFERENCE 1 (bases 1 to 407) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Tenthredo notha whole genome shotgun (WGS) project has the project accession CAJZBT000000000. This version of the project (01) has the accession number CAJZBT010000000, and consists of sequences CAJZBT010000001-CAJZBT010000407. The assembly iyTenNoth1.1 is based on 77x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..407 /organism="Tenthredo notha" /mol_type="genomic DNA" /db_xref="taxon:362091" WGS CAJZBT010000001-CAJZBT010000407 // LOCUS CAJZBX010000000 1187 rc DNA linear INV 11-SEP-2021 DEFINITION Anoplius nigerrimus, whole genome shotgun sequencing project. ACCESSION CAJZBX000000000 VERSION CAJZBX000000000.1 DBLINK BioProject: PRJEB47348 BioSample: SAMEA7746764 KEYWORDS WGS. SOURCE Anoplius nigerrimus ORGANISM Anoplius nigerrimus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Pompiloidea; Pompilidae; Pompilinae; Anoplius. REFERENCE 1 (bases 1 to 1187) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Anoplius nigerrimus whole genome shotgun (WGS) project has the project accession CAJZBX000000000. This version of the project (01) has the accession number CAJZBX010000000, and consists of sequences CAJZBX010000001-CAJZBX010001187. The assembly iyAnoNige1.1 is based on 29x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..1187 /organism="Anoplius nigerrimus" /mol_type="genomic DNA" /db_xref="taxon:1667466" WGS CAJZBX010000001-CAJZBX010001187 // LOCUS CAJZBA010000000 266 rc DNA linear PLN 11-SEP-2021 DEFINITION Dunaliella primolecta, whole genome shotgun sequencing project. ACCESSION CAJZBA000000000 VERSION CAJZBA000000000.1 DBLINK BioProject: PRJEB47343 BioSample: SAMEA8100039 KEYWORDS WGS. SOURCE Dunaliella primolecta ORGANISM Dunaliella primolecta Eukaryota; Viridiplantae; Chlorophyta; core chlorophytes; Chlorophyceae; CS clade; Chlamydomonadales; Dunaliellaceae; Dunaliella. REFERENCE 1 (bases 1 to 266) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Dunaliella primolecta whole genome shotgun (WGS) project has the project accession CAJZBA000000000. This version of the project (01) has the accession number CAJZBA010000000, and consists of sequences CAJZBA010000001-CAJZBA010000266. The assembly ucDunPrim2.1 is based on 40x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..266 /organism="Dunaliella primolecta" /mol_type="genomic DNA" /db_xref="taxon:257627" WGS CAJZBA010000001-CAJZBA010000266 // LOCUS CAJZBB010000000 9 rc DNA linear PLN 11-SEP-2021 DEFINITION Dunaliella primolecta, whole genome shotgun sequencing project. ACCESSION CAJZBB000000000 VERSION CAJZBB000000000.1 DBLINK BioProject: PRJEB47344 BioSample: SAMEA8100039 KEYWORDS WGS. SOURCE Dunaliella primolecta ORGANISM Dunaliella primolecta Eukaryota; Viridiplantae; Chlorophyta; core chlorophytes; Chlorophyceae; CS clade; Chlamydomonadales; Dunaliellaceae; Dunaliella. REFERENCE 1 (bases 1 to 9) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Dunaliella primolecta whole genome shotgun (WGS) project has the project accession CAJZBB000000000. This version of the project (01) has the accession number CAJZBB010000000, and consists of sequences CAJZBB010000001-CAJZBB010000009. The assembly ucDunPrim2.1 is based on 40x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..9 /organism="Dunaliella primolecta" /mol_type="genomic DNA" /db_xref="taxon:257627" WGS CAJZBB010000001-CAJZBB010000009 // LOCUS CAJZBU010000000 71 rc DNA linear INV 11-SEP-2021 DEFINITION Melanostoma mellinum, whole genome shotgun sequencing project. ACCESSION CAJZBU000000000 VERSION CAJZBU000000000.1 DBLINK BioProject: PRJEB47341 BioSample: SAMEA7520051 KEYWORDS WGS. SOURCE Melanostoma mellinum ORGANISM Melanostoma mellinum Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Syrphoidea; Syrphidae; Syrphinae; Melanostomini; Melanostoma. REFERENCE 1 (bases 1 to 71) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Melanostoma mellinum whole genome shotgun (WGS) project has the project accession CAJZBU000000000. This version of the project (01) has the accession number CAJZBU010000000, and consists of sequences CAJZBU010000001-CAJZBU010000071. The assembly idMelMell2.1 is based on 26x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..71 /organism="Melanostoma mellinum" /mol_type="genomic DNA" /db_xref="taxon:653684" WGS CAJZBU010000001-CAJZBU010000071 // LOCUS CAJZCA010000000 47 rc DNA linear INV 11-SEP-2021 DEFINITION Thecocarcelia acutangulata, whole genome shotgun sequencing project. ACCESSION CAJZCA000000000 VERSION CAJZCA000000000.1 DBLINK BioProject: PRJEB47351 BioSample: SAMEA7746598 KEYWORDS WGS. SOURCE Thecocarcelia acutangulata ORGANISM Thecocarcelia acutangulata Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Oestroidea; Tachinidae; Exoristinae; Eryciini; Thecocarcelia. REFERENCE 1 (bases 1 to 47) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Thecocarcelia acutangulata whole genome shotgun (WGS) project has the project accession CAJZCA000000000. This version of the project (01) has the accession number CAJZCA010000000, and consists of sequences CAJZCA010000001-CAJZCA010000047. The assembly idTheAcut1.1 is based on 40x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..47 /organism="Thecocarcelia acutangulata" /mol_type="genomic DNA" /db_xref="taxon:1918310" WGS CAJZCA010000001-CAJZCA010000047 // LOCUS CAJZBS010000000 54 rc DNA linear INV 11-SEP-2021 DEFINITION Coremacera marginata, whole genome shotgun sequencing project. ACCESSION CAJZBS000000000 VERSION CAJZBS000000000.1 DBLINK BioProject: PRJEB47370 BioSample: SAMEA7521524 KEYWORDS WGS. SOURCE Coremacera marginata ORGANISM Coremacera marginata Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Sciomyzoidea; Sciomyzidae; Coremacera. REFERENCE 1 (bases 1 to 54) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Coremacera marginata whole genome shotgun (WGS) project has the project accession CAJZBS000000000. This version of the project (01) has the accession number CAJZBS010000000, and consists of sequences CAJZBS010000001-CAJZBS010000054. The assembly idCorMarg1.1 is based on 25x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..54 /organism="Coremacera marginata" /mol_type="genomic DNA" /db_xref="taxon:1226616" WGS CAJZBS010000001-CAJZBS010000054 // LOCUS CAJZAX010000000 44 rc DNA linear VRT 11-SEP-2021 DEFINITION Thunnus albacares, whole genome shotgun sequencing project. ACCESSION CAJZAX000000000 VERSION CAJZAX000000000.1 DBLINK BioProject: PRJEB47267 BioSample: SAMEA8654749 KEYWORDS WGS. SOURCE Thunnus albacares (yellowfin tuna) ORGANISM Thunnus albacares Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Pelagiaria; Scombriformes; Scombridae; Thunnus. REFERENCE 1 (bases 1 to 44) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (31-AUG-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Thunnus albacares whole genome shotgun (WGS) project has the project accession CAJZAX000000000. This version of the project (01) has the accession number CAJZAX010000000, and consists of sequences CAJZAX010000001-CAJZAX010000044. The assembly fThuAlb1.1 is based on 45x PacBio data, 42x 10X Genomics Chromium data, and Arima Hi-C data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..44 /organism="Thunnus albacares" /mol_type="genomic DNA" /db_xref="taxon:8236" WGS CAJZAX010000001-CAJZAX010000044 // LOCUS CAJZBN010000000 5 rc DNA linear INV 11-SEP-2021 DEFINITION Harmonia axyridis, whole genome shotgun sequencing project. ACCESSION CAJZBN000000000 VERSION CAJZBN000000000.1 DBLINK BioProject: PRJEB47373 BioSample: SAMEA7520208 KEYWORDS WGS. SOURCE Harmonia axyridis ORGANISM Harmonia axyridis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Coccinellidae; Coccinellinae; Coccinellini; Harmonia. REFERENCE 1 (bases 1 to 5) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Harmonia axyridis whole genome shotgun (WGS) project has the project accession CAJZBN000000000. This version of the project (01) has the accession number CAJZBN010000000, and consists of sequences CAJZBN010000001-CAJZBN010000005. The assembly icHarAxyr1.1 is based on 53x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. 7 curated autosomes and 1 allosome (X) curated for Harmonia axyridis. Some scaffolds remain unplaced due to repetitive content giving ambiguous HiC signal. Large cluster of rDNA sequences placed on X using HiC data only. FEATURES Location/Qualifiers source 1..5 /organism="Harmonia axyridis" /mol_type="genomic DNA" /db_xref="taxon:115357" WGS CAJZBN010000001-CAJZBN010000005 // LOCUS CAJZBL010000000 7 rc DNA linear INV 11-SEP-2021 DEFINITION Tenthredo notha, whole genome shotgun sequencing project. ACCESSION CAJZBL000000000 VERSION CAJZBL000000000.1 DBLINK BioProject: PRJEB47355 BioSample: SAMEA7746761 KEYWORDS WGS. SOURCE Tenthredo notha ORGANISM Tenthredo notha Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Tenthredinoidea; Tenthredinidae; Tenthredininae; Tenthredo. REFERENCE 1 (bases 1 to 7) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Tenthredo notha whole genome shotgun (WGS) project has the project accession CAJZBL000000000. This version of the project (01) has the accession number CAJZBL010000000, and consists of sequences CAJZBL010000001-CAJZBL010000007. The assembly iyTenNoth1.1 is based on 77x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..7 /organism="Tenthredo notha" /mol_type="genomic DNA" /db_xref="taxon:362091" WGS CAJZBL010000001-CAJZBL010000007 // LOCUS CAJZBG010000000 4 rc DNA linear INV 11-SEP-2021 DEFINITION Agrochola circellaris, whole genome shotgun sequencing project. ACCESSION CAJZBG000000000 VERSION CAJZBG000000000.1 DBLINK BioProject: PRJEB47364 BioSample: SAMEA8603201 KEYWORDS WGS. SOURCE Agrochola circellaris ORGANISM Agrochola circellaris Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Agrochola. REFERENCE 1 (bases 1 to 4) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Agrochola circellaris whole genome shotgun (WGS) project has the project accession CAJZBG000000000. This version of the project (01) has the accession number CAJZBG010000000, and consists of sequences CAJZBG010000001-CAJZBG010000004. The assembly ilAgrCirc1.1 is based on 33x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..4 /organism="Agrochola circellaris" /mol_type="genomic DNA" /db_xref="taxon:987866" WGS CAJZBG010000001-CAJZBG010000004 // LOCUS CAJZBW010000000 10 rc DNA linear INV 11-SEP-2021 DEFINITION Membranipora membranacea, whole genome shotgun sequencing project. ACCESSION CAJZBW000000000 VERSION CAJZBW000000000.1 DBLINK BioProject: PRJEB47372 BioSample: SAMEA7536681 KEYWORDS WGS. SOURCE Membranipora membranacea ORGANISM Membranipora membranacea Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Bryozoa; Gymnolaemata; Cheilostomatida; Malacostegina; Membraniporoidea; Membraniporidae; Membranipora. REFERENCE 1 (bases 1 to 10) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Membranipora membranacea whole genome shotgun (WGS) project has the project accession CAJZBW000000000. This version of the project (01) has the accession number CAJZBW010000000, and consists of sequences CAJZBW010000001-CAJZBW010000010. The assembly tzMemMemb1.1 is based on 66x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..10 /organism="Membranipora membranacea" /mol_type="genomic DNA" /db_xref="taxon:95170" WGS CAJZBW010000001-CAJZBW010000010 // LOCUS CAJZBR010000000 4 rc DNA linear INV 11-SEP-2021 DEFINITION Sesia apiformis, whole genome shotgun sequencing project. ACCESSION CAJZBR000000000 VERSION CAJZBR000000000.1 DBLINK BioProject: PRJEB47347 BioSample: SAMEA7701281 KEYWORDS WGS. SOURCE Sesia apiformis ORGANISM Sesia apiformis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Sesioidea; Sesiidae; Sesiinae; Sesiini; Sesia. REFERENCE 1 (bases 1 to 4) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Sesia apiformis whole genome shotgun (WGS) project has the project accession CAJZBR000000000. This version of the project (01) has the accession number CAJZBR010000000, and consists of sequences CAJZBR010000001-CAJZBR010000004. The assembly ilSesApif2.1 is based on 26x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..4 /organism="Sesia apiformis" /mol_type="genomic DNA" /db_xref="taxon:748215" WGS CAJZBR010000001-CAJZBR010000004 // LOCUS CAJZBC010000000 3 rc DNA linear INV 11-SEP-2021 DEFINITION Hydraecia micacea, whole genome shotgun sequencing project. ACCESSION CAJZBC000000000 VERSION CAJZBC000000000.1 DBLINK BioProject: PRJEB47367 BioSample: SAMEA8603188 KEYWORDS WGS. SOURCE Hydraecia micacea (rosy rustic) ORGANISM Hydraecia micacea Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Noctuinae; Apameini; Hydraecia. REFERENCE 1 (bases 1 to 3) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-SEP-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Hydraecia micacea whole genome shotgun (WGS) project has the project accession CAJZBC000000000. This version of the project (01) has the accession number CAJZBC010000000, and consists of sequences CAJZBC010000001-CAJZBC010000003. The assembly ilHydMica1.1 is based on 30x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..3 /organism="Hydraecia micacea" /mol_type="genomic DNA" /db_xref="taxon:214171" WGS CAJZBC010000001-CAJZBC010000003 // LOCUS JAHSPX010000000 2350 rc DNA linear PLN 14-SEP-2021 DEFINITION Arctostaphylos glauca isolate GLNDR_RDG_Rd-6, whole genome shotgun sequencing project. ACCESSION JAHSPX000000000 VERSION JAHSPX000000000.1 DBLINK BioProject: PRJNA735272 BioSample: SAMN19489519 KEYWORDS WGS. SOURCE Arctostaphylos glauca ORGANISM Arctostaphylos glauca Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Ericaceae; Arbutoideae; Arctostaphylos. REFERENCE 1 (bases 1 to 2350) AUTHORS Escalona,M., Huang,Y., Morrison,G., Litt,A. and Toffelmeier,E. TITLE Reference genome assembly of the Big Berry Manzanita (Arctostaphylos glauca) JOURNAL Unpublished REFERENCE 2 (bases 1 to 2350) AUTHORS Escalona,M., Huang,Y., Morrison,G., Litt,A. and Toffelmeier,E. TITLE Direct Submission JOURNAL Submitted (24-JUN-2021) Ecology and Evolutionary Biology, UCLA, 610 Charles Young Drive South, Los Angeles, CA 90095, USA COMMENT The Arctostaphylos glauca whole genome shotgun (WGS) project has the project accession JAHSPX000000000. This version of the project (01) has the accession number JAHSPX010000000, and consists of sequences JAHSPX010000001-JAHSPX010002350. ##Genome-Assembly-Data-START## Assembly Date :: 04-JUN-2021 Assembly Method :: HiFiasm v. 0.13-r308; purge_dups v. 1.2.5; SALSA v. 2.1 Assembly Name :: ddArcGlau1.0.a Diploid :: Alternate Pseudohaplotype Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 45x Sequencing Technology :: PacBio HiFi (Sequel II); Dovetail HiC ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..2350 /organism="Arctostaphylos glauca" /mol_type="genomic DNA" /isolate="GLNDR_RDG_Rd-6" /specimen_voucher="Morrison 13" /db_xref="taxon:89197" /tissue_type="Floral buds" /dev_stage="flowering" /country="USA: Glendora Ridge Rd, San Gabriel Mountain, California" /lat_lon="34.20649 N 117.78815 W" /collection_date="2018-02-19" /collected_by="Glen Morrison, Yi Huang, Amy Litt" WGS JAHSPX010000001-JAHSPX010002350 // LOCUS JAHSPW010000000 271 rc DNA linear PLN 14-SEP-2021 DEFINITION Arctostaphylos glauca isolate GLNDR_RDG_Rd-6, whole genome shotgun sequencing project. ACCESSION JAHSPW000000000 VERSION JAHSPW000000000.1 DBLINK BioProject: PRJNA735273 BioSample: SAMN19489519 KEYWORDS WGS. SOURCE Arctostaphylos glauca ORGANISM Arctostaphylos glauca Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Ericaceae; Arbutoideae; Arctostaphylos. REFERENCE 1 (bases 1 to 271) AUTHORS Escalona,M., Huang,Y., Morrison,G., Litt,A. and Toffelmeier,E. TITLE Reference genome assembly of the Big Berry Manzanita (Arctostaphylos glauca) JOURNAL Unpublished REFERENCE 2 (bases 1 to 271) AUTHORS Escalona,M., Huang,Y., Morrison,G., Litt,A. and Toffelmeier,E. TITLE Direct Submission JOURNAL Submitted (16-JUN-2021) Ecology and Evolutionary Biology, UCLA, 610 Charles Young Drive South, Los Angeles, CA 90095, USA COMMENT The Arctostaphylos glauca whole genome shotgun (WGS) project has the project accession JAHSPW000000000. This version of the project (01) has the accession number JAHSPW010000000, and consists of sequences JAHSPW010000001-JAHSPW010000271. ##Genome-Assembly-Data-START## Assembly Date :: 04-JUN-2021 Assembly Method :: HiFiasm v. 0.13-r308; purge_dups v. 1.2.5; SALSA v. 2.1 Assembly Name :: ddArcGlau1.0.p Diploid :: Principal Pseudohaplotype Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 45x Sequencing Technology :: PacBio HiFi (Sequel II); Dovetail HiC ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..271 /organism="Arctostaphylos glauca" /mol_type="genomic DNA" /isolate="GLNDR_RDG_Rd-6" /specimen_voucher="Morrison 13" /db_xref="taxon:89197" /tissue_type="Floral buds" /dev_stage="flowering" /country="USA: Glendora Ridge Rd, San Gabriel Mountain, California" /lat_lon="34.20649 N 117.78815 W" /collection_date="2018-02-19" /collected_by="Glen Morrison, Yi Huang, Amy Litt" WGS JAHSPW010000001-JAHSPW010000271 // LOCUS WSPL04000000 41 rc DNA linear VRT 25-AUG-2021 DEFINITION Dermochelys coriacea isolate rDerCor1, whole genome shotgun sequencing project. ACCESSION WSPL00000000 VERSION WSPL00000000.4 DBLINK BioProject: PRJNA561993 BioSample: SAMN12629498 KEYWORDS WGS. SOURCE Dermochelys coriacea (leatherback sea turtle) ORGANISM Dermochelys coriacea Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Dermochelyidae; Dermochelys. REFERENCE 1 (bases 1 to 41) AUTHORS Komoroske,L., Fedrigo,O., Mountcastle,J., Uliano Da Silva,M., Haase,B., Formenti,G., Chow,W., Howe,K., Gilbert,M.T.P., Flicek,P., Gemmell,N., Marques,T., Scott,A., Murphy,R., Bjorndal,K., Braun,E., Rhie,A., Tracey,A., Sims,Y., Thibaud-Nissen,F., Phillippy,A. and Jarvis,E.D. TITLE (UPDATE) Dermochelys coriacea (Leatherback Sea Turtle) genome, rDerCor1, primary haplotype, v4 JOURNAL Unpublished REFERENCE 2 (bases 1 to 41) AUTHORS Komoroske,L., Fedrigo,O., Mountcastle,J., Uliano Da Silva,M., Haase,B., Formenti,G., Chow,W., Howe,K., Gilbert,M.T.P., Flicek,P., Gemmell,N., Marques,T., Scott,A., Murphy,R., Bjorndal,K., Braun,E., Rhie,A., Phillippy,A. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (05-DEC-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA REFERENCE 3 (bases 1 to 41) AUTHORS Komoroske,L., Fedrigo,O., Mountcastle,J., Uliano Da Silva,M., Haase,B., Formenti,G., Chow,W., Howe,K., Gilbert,M.T.P., Flicek,P., Gemmell,N., Marques,T., Scott,A., Murphy,R., Bjorndal,K., Braun,E., Rhie,A., Tracey,A., Sims,Y., Thibaud-Nissen,F., Phillippy,A. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (25-JUL-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT On Aug 16, 2021 this sequence version replaced WSPL00000000.3. The Dermochelys coriacea whole genome shotgun (WGS) project has the project accession WSPL00000000. This version of the project (04) has the accession number WSPL04000000, and consists of sequences WSPL04000001-WSPL04000041. ##Genome-Assembly-Data-START## Assembly Date :: 24-MAY-2021 Assembly Method :: FALCON DNANexus v. 1.9.0; FALCON-Unzip DNANexus v. 1.0.6; purge_dups v. v1; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2021-05-24; VGP assembly pipeline individual v. 1.6 Assembly Name :: rDerCor1.pri.v4 Diploid :: Principal Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 63.68x Sequencing Technology :: PacBio Sequel I CLR; llumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..41 /organism="Dermochelys coriacea" /mol_type="genomic DNA" /isolate="rDerCor1" /db_xref="taxon:27794" /sex="male" /tissue_type="blood" /dev_stage="adult" /country="USA: Half Moon Bay, California" /lat_lon="37.46311 N 122.4293 W" /collection_date="2017-09-26" /collected_by="Lisa Komoroske" WGS WSPL04000001-WSPL04000041 WGS_SCAFLD CM019935-CM019962 WGS_SCAFLD CM019965 // LOCUS CAJVWD010000000 199 rc DNA linear INV 18-AUG-2021 DEFINITION Hydriomena furcata, whole genome shotgun sequencing project. ACCESSION CAJVWD000000000 VERSION CAJVWD000000000.1 DBLINK BioProject: PRJEB47025 BioSample: SAMEA7701301 KEYWORDS WGS. SOURCE Hydriomena furcata ORGANISM Hydriomena furcata Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Larentiinae; Hydriomena. REFERENCE 1 (bases 1 to 199) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (16-AUG-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Hydriomena furcata whole genome shotgun (WGS) project has the project accession CAJVWD000000000. This version of the project (01) has the accession number CAJVWD010000000, and consists of sequences CAJVWD010000001-CAJVWD010000199. The assembly ilHydFurc1.1 is based on 42x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..199 /organism="Hydriomena furcata" /mol_type="genomic DNA" /db_xref="taxon:104460" WGS CAJVWD010000001-CAJVWD010000199 // LOCUS CAJVWE010000000 341 rc DNA linear INV 18-AUG-2021 DEFINITION Campaea margaritaria, whole genome shotgun sequencing project. ACCESSION CAJVWE000000000 VERSION CAJVWE000000000.1 DBLINK BioProject: PRJEB47022 BioSample: SAMEA7701535 KEYWORDS WGS. SOURCE Campaea margaritaria ORGANISM Campaea margaritaria Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Ennominae; Campaea. REFERENCE 1 (bases 1 to 341) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (16-AUG-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Campaea margaritaria whole genome shotgun (WGS) project has the project accession CAJVWE000000000. This version of the project (01) has the accession number CAJVWE010000000, and consists of sequences CAJVWE010000001-CAJVWE010000341. The assembly ilCamMarg1.1 is based on 48x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..341 /organism="Campaea margaritaria" /mol_type="genomic DNA" /db_xref="taxon:934813" WGS CAJVWE010000001-CAJVWE010000341 // LOCUS CAJVWB010000000 36 rc DNA linear INV 18-AUG-2021 DEFINITION Papilio machaon, whole genome shotgun sequencing project. ACCESSION CAJVWB000000000 VERSION CAJVWB000000000.1 DBLINK BioProject: PRJEB47026 BioSample: SAMEA7523121 KEYWORDS WGS. SOURCE Papilio machaon (common yellow swallowtail) ORGANISM Papilio machaon Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio. REFERENCE 1 (bases 1 to 36) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (16-AUG-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Papilio machaon whole genome shotgun (WGS) project has the project accession CAJVWB000000000. This version of the project (01) has the accession number CAJVWB010000000, and consists of sequences CAJVWB010000001-CAJVWB010000036. The assembly ilPapMach1.1 is based on 99x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..36 /organism="Papilio machaon" /mol_type="genomic DNA" /db_xref="taxon:76193" WGS CAJVWB010000001-CAJVWB010000036 // LOCUS CAJVWA010000000 130 rc DNA linear INV 18-AUG-2021 DEFINITION Aporia crataegi, whole genome shotgun sequencing project. ACCESSION CAJVWA000000000 VERSION CAJVWA000000000.1 DBLINK BioProject: PRJEB47021 BioSample: SAMEA7523355 KEYWORDS WGS. SOURCE Aporia crataegi ORGANISM Aporia crataegi Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Pieridae; Pierinae; Aporia. REFERENCE 1 (bases 1 to 130) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (16-AUG-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Aporia crataegi whole genome shotgun (WGS) project has the project accession CAJVWA000000000. This version of the project (01) has the accession number CAJVWA010000000, and consists of sequences CAJVWA010000001-CAJVWA010000130. The assembly ilApoCrat1.1 is based on 101x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..130 /organism="Aporia crataegi" /mol_type="genomic DNA" /db_xref="taxon:129397" WGS CAJVWA010000001-CAJVWA010000130 // LOCUS CAJVWF010000000 6 rc DNA linear INV 18-AUG-2021 DEFINITION Hydriomena furcata, whole genome shotgun sequencing project. ACCESSION CAJVWF000000000 VERSION CAJVWF000000000.1 DBLINK BioProject: PRJEB47024 BioSample: SAMEA7701301 KEYWORDS WGS. SOURCE Hydriomena furcata ORGANISM Hydriomena furcata Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Larentiinae; Hydriomena. REFERENCE 1 (bases 1 to 6) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (16-AUG-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Hydriomena furcata whole genome shotgun (WGS) project has the project accession CAJVWF000000000. This version of the project (01) has the accession number CAJVWF010000000, and consists of sequences CAJVWF010000001-CAJVWF010000006. The assembly ilHydFurc1.1 is based on 42x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..6 /organism="Hydriomena furcata" /mol_type="genomic DNA" /db_xref="taxon:104460" WGS CAJVWF010000001-CAJVWF010000006 // LOCUS CAJVWC010000000 2 rc DNA linear INV 18-AUG-2021 DEFINITION Papilio machaon, whole genome shotgun sequencing project. ACCESSION CAJVWC000000000 VERSION CAJVWC000000000.1 DBLINK BioProject: PRJEB47027 BioSample: SAMEA7523121 KEYWORDS WGS. SOURCE Papilio machaon (common yellow swallowtail) ORGANISM Papilio machaon Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio. REFERENCE 1 (bases 1 to 2) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (16-AUG-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Papilio machaon whole genome shotgun (WGS) project has the project accession CAJVWC000000000. This version of the project (01) has the accession number CAJVWC010000000, and consists of sequences CAJVWC010000001-CAJVWC010000002. The assembly ilPapMach1.1 is based on 99x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..2 /organism="Papilio machaon" /mol_type="genomic DNA" /db_xref="taxon:76193" WGS CAJVWC010000001-CAJVWC010000002 // LOCUS CAJHXB020000000 2586 rc DNA linear INV 16-AUG-2021 DEFINITION Phalera bucephala, whole genome shotgun sequencing project. ACCESSION CAJHXB000000000 VERSION CAJHXB000000000.2 DBLINK BioProject: PRJEB41947 BioSample: SAMEA7519921 KEYWORDS WGS. SOURCE Phalera bucephala ORGANISM Phalera bucephala Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Notodontidae; Phalerinae; Phalera. REFERENCE 1 (bases 1 to 2586) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (14-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 2586) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (13-AUG-2021) SC, Wellcome Sanger Institute, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT On Aug 16, 2021 this sequence version replaced CAJHXB000000000.1. The Phalera bucephala whole genome shotgun (WGS) project has the project accession CAJHXB000000000. This version of the project (02) has the accession number CAJHXB020000000, and consists of sequences CAJHXB020000001-CAJHXB020002586. The assembly ilPhaBuce1.2 is based on 34x PacBio data, 10X Genomics Chromium data, and Qiagen Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..2586 /organism="Phalera bucephala" /mol_type="genomic DNA" /db_xref="taxon:753216" WGS CAJHXB020000001-CAJHXB020002586 // LOCUS CAJHXA020000000 85 rc DNA linear INV 16-AUG-2021 DEFINITION Phalera bucephala, whole genome shotgun sequencing project. ACCESSION CAJHXA000000000 VERSION CAJHXA000000000.2 DBLINK BioProject: PRJEB41948 BioSample: SAMEA7519921 KEYWORDS WGS. SOURCE Phalera bucephala ORGANISM Phalera bucephala Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Notodontidae; Phalerinae; Phalera. REFERENCE 1 (bases 1 to 85) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (14-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 85) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (13-AUG-2021) SC, Wellcome Sanger Institute, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT On Aug 16, 2021 this sequence version replaced CAJHXA000000000.1. The Phalera bucephala whole genome shotgun (WGS) project has the project accession CAJHXA000000000. This version of the project (02) has the accession number CAJHXA020000000, and consists of sequences CAJHXA020000001-CAJHXA020000085. The assembly ilPhaBuce1.2 is based on 34x PacBio data, 10X Genomics Chromium data, and Qiagen Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..85 /organism="Phalera bucephala" /mol_type="genomic DNA" /db_xref="taxon:753216" WGS CAJHXA020000001-CAJHXA020000085 // LOCUS CAJVVO010000000 739 rc DNA linear INV 14-AUG-2021 DEFINITION Vespa velutina, whole genome shotgun sequencing project. ACCESSION CAJVVO000000000 VERSION CAJVVO000000000.1 DBLINK BioProject: PRJEB46980 BioSample: SAMEA5248726 KEYWORDS WGS. SOURCE Vespa velutina ORGANISM Vespa velutina Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Vespoidea; Vespidae; Vespinae; Vespa. REFERENCE 1 (bases 1 to 739) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (12-AUG-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Vespa velutina whole genome shotgun (WGS) project has the project accession CAJVVO000000000. This version of the project (01) has the accession number CAJVVO010000000, and consists of sequences CAJVVO010000001-CAJVVO010000739. The assembly iVesVel2.1 is based on 56x PacBio data and 94x 10X Genomics Chromium data generated at the Wellcome Sanger Institute, and Hi-C data generated at the Baylor College of Medicine. The assembly process included the following sequence of steps: palindromic read correction with pbclip, initial PacBio assembly generation with Falcon-unzip, retained haplotig separation with purge_dups, Hi-C based scaffolding with SALSA2, Arrow polishing, and short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger. The mitochondrial assembly was produced using mitoVGP. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..739 /organism="Vespa velutina" /mol_type="genomic DNA" /db_xref="taxon:202808" WGS CAJVVO010000001-CAJVVO010000739 // LOCUS CAJVVP010000000 17 rc DNA linear INV 14-AUG-2021 DEFINITION Vespa velutina, whole genome shotgun sequencing project. ACCESSION CAJVVP000000000 VERSION CAJVVP000000000.1 DBLINK BioProject: PRJEB46979 BioSample: SAMEA5248726 KEYWORDS WGS. SOURCE Vespa velutina ORGANISM Vespa velutina Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Vespoidea; Vespidae; Vespinae; Vespa. REFERENCE 1 (bases 1 to 17) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (12-AUG-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Vespa velutina whole genome shotgun (WGS) project has the project accession CAJVVP000000000. This version of the project (01) has the accession number CAJVVP010000000, and consists of sequences CAJVVP010000001-CAJVVP010000017. The assembly iVesVel2.1 is based on 56x PacBio data and 94x 10X Genomics Chromium data generated at the Wellcome Sanger Institute, and Hi-C data generated at the Baylor College of Medicine. The assembly process included the following sequence of steps: palindromic read correction with pbclip, initial PacBio assembly generation with Falcon-unzip, retained haplotig separation with purge_dups, Hi-C based scaffolding with SALSA2, Arrow polishing, and short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger. The mitochondrial assembly was produced using mitoVGP. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..17 /organism="Vespa velutina" /mol_type="genomic DNA" /db_xref="taxon:202808" WGS CAJVVP010000001-CAJVVP010000017 // LOCUS RRCC02000000 1646 rc DNA linear VRT 11-AUG-2021 DEFINITION Taeniopygia guttata isolate Black17, whole genome shotgun sequencing project. ACCESSION RRCC00000000 VERSION RRCC00000000.2 DBLINK BioProject: PRJNA489099 BioSample: SAMN02981239 KEYWORDS WGS. SOURCE Taeniopygia guttata (zebra finch) ORGANISM Taeniopygia guttata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia. REFERENCE 1 (bases 1 to 1646) AUTHORS Warren,W.C., Clayton,D.F., Ellegren,H., Arnold,A.P., Hillier,L.W., Kunstner,A., Searle,S., White,S., Vilella,A.J., Fairley,S., Heger,A., Kong,L., Ponting,C.P., Jarvis,E.D., Mello,C.V., Minx,P., Lovell,P., Velho,T.A., Ferris,M., Balakrishnan,C.N., Sinha,S., Blatti,C., London,S.E., Li,Y., Lin,Y.C., George,J., Sweedler,J., Southey,B., Gunaratne,P., Watson,M., Nam,K., Backstrom,N., Smeds,L., Nabholz,B., Itoh,Y., Whitney,O., Pfenning,A.R., Howard,J., Volker,M., Skinner,B.M., Griffin,D.K., Ye,L., McLaren,W.M., Flicek,P., Quesada,V., Velasco,G., Lopez-Otin,C., Puente,X.S., Olender,T., Lancet,D., Smit,A.F., Hubley,R., Konkel,M.K., Walker,J.A., Batzer,M.A., Gu,W., Pollock,D.D., Chen,L., Cheng,Z., Eichler,E.E., Stapley,J., Slate,J., Ekblom,R., Birkhead,T., Burke,T., Burt,D., Scharff,C., Adam,I., Richard,H., Sultan,M., Soldatov,A., Lehrach,H., Edwards,S.V., Yang,S.P., Li,X., Graves,T., Fulton,L., Nelson,J., Chinwalla,A., Hou,S., Mardis,E.R. and Wilson,R.K. TITLE The genome of a songbird JOURNAL Nature 464 (7289), 757-762 (2010) PUBMED 20360741 REFERENCE 2 (bases 1 to 1646) AUTHORS Korlach,J., Gedman,G., Kingan,S.B., Chin,C.S., Howard,J.T., Audet,J.N., Cantin,L. and Jarvis,E.D. TITLE De novo PacBio long-read and phased avian genome assemblies correct and add to reference genes generated with intermediate and short reads JOURNAL Gigascience 6 (10), 1-16 (2017) PUBMED 29020750 REFERENCE 3 (bases 1 to 1646) AUTHORS Rhie,A., McCarthy,S.A., Fedrigo,O., Damas,J., Formenti,G., Koren,S., Uliano-Silva,M., Chow,W., Fungtammasan,A., Kim,J., Lee,C., Ko,B.J., Chaisson,M., Gedman,G.L., Cantin,L.J., Thibaud-Nissen,F., Haggerty,L., Bista,I., Smith,M., Haase,B., Mountcastle,J., Winkler,S., Paez,S., Howard,J., Vernes,S.C., Lama,T.M., Grutzner,F., Warren,W.C., Balakrishnan,C.N., Burt,D., George,J.M., Biegler,M.T., Iorns,D., Digby,A., Eason,D., Robertson,B., Edwards,T., Wilkinson,M., Turner,G., Meyer,A., Kautt,A.F., Franchini,P., Detrich,H.W. III, Svardal,H., Wagner,M., Naylor,G.J.P., Pippel,M., Malinsky,M., Mooney,M., Simbirsky,M., Hannigan,B.T., Pesout,T., Houck,M., Misuraca,A., Kingan,S.B., Hall,R., Kronenberg,Z., Sovic,I., Dunn,C., Ning,Z., Hastie,A., Lee,J., Selvaraj,S., Green,R.E., Putnam,N.H., Gut,I., Ghurye,J., Garrison,E., Sims,Y., Collins,J., Pelan,S., Torrance,J., Tracey,A., Wood,J., Dagnew,R.E., Guan,D., London,S.E., Clayton,D.F., Mello,C.V., Friedrich,S.R., Lovell,P.V., Osipova,E., Al-Ajli,F.O., Secomandi,S., Kim,H., Theofanopoulou,C., Hiller,M., Zhou,Y., Harris,R.S., Makova,K.D., Medvedev,P., Hoffman,J., Masterson,P., Clark,K., Martin,F., Howe,K., Flicek,P., Walenz,B.P., Kwak,W., Clawson,H., Diekhans,M., Nassar,L., Paten,B., Kraus,R.H.S., Crawford,A.J., Gilbert,M.T.P., Zhang,G., Venkatesh,B., Murphy,R.W., Koepfli,K.P., Shapiro,B., Johnson,W.E., Di Palma,F., Marques-Bonet,T., Teeling,E.C., Warnow,T., Graves,J.M., Ryder,O.A., Haussler,D., O'Brien,S.J., Korlach,J., Lewin,H.A., Howe,K., Myers,E.W., Durbin,R., Phillippy,A.M. and Jarvis,E.D. TITLE Towards complete and error-free genome assemblies of all vertebrate species JOURNAL Nature 592 (7856), 737-746 (2021) PUBMED 33911273 REFERENCE 4 (bases 1 to 1646) AUTHORS Jarvis,E.D., Rhie,A., Korlach,J., Fedrigo,O., Mountcastle,J., Haase,B., Koren,S., Howe,K., Wood,J., Lewin,H., Damas,J., Balakrishnan,C., Clayton,D., London,S., George,J., Burt,D., Warren,W., Selvaraj,S., Mello,C.V. and Phillippy,A. TITLE Direct Submission JOURNAL Submitted (06-NOV-2018) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA REFERENCE 5 (bases 1 to 1646) AUTHORS Jarvis,E.D., Rhie,A., Korlach,J., Formenti,G., Mountcastle,J., Koren,S., Howe,K., Chow,W., Wood,J., Lewin,H., Damas,J., Balakrishnan,C., Clayton,D., London,S., George,J., Haase,B., Burt,D., Warren,W., Selvaraj,S., Mello,C.V., Brown,S. and Fedrigo,O. TITLE Direct Submission JOURNAL Submitted (23-APR-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT On Apr 28, 2021 this sequence version replaced RRCC00000000.1. The Taeniopygia guttata whole genome shotgun (WGS) project has the project accession RRCC00000000. This version of the project (02) has the accession number RRCC02000000, and consists of sequences RRCC02000001-RRCC02001646. ##Genome-Assembly-Data-START## Assembly Date :: 09-APR-2021 Assembly Method :: FALCON v. 5.1.1; FALCON unzip v. Nov2017(uc4); Purge_dups v. 1.0.1; Scaff10X v. 3.2.1; Bionano Solve BspQI/BssSI v. 3.4; Salsa2 v. 2.2; Arrow polishing v. variantCaller 2.3.3; Merfin filtering v. 0.1; longranger align v. 2.2.2; freebayes polishing v. 1.3.1; gEVAL manual curation v. 2021-04-09; VGP pipeline v. 1.7 Assembly Name :: bTaeGut1.4.alt Diploid :: Alternate Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 88.2x Sequencing Technology :: PacBio RSII; 10X Genomics linked reads; Bionano Genomics DLS; Arima Genomics HiC ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1646 /organism="Taeniopygia guttata" /mol_type="genomic DNA" /isolate="Black17" /db_xref="taxon:59729" /sex="male" WGS RRCC02000001-RRCC02001646 // LOCUS RRCB02000000 198 rc DNA linear VRT 11-AUG-2021 DEFINITION Taeniopygia guttata isolate Black17, whole genome shotgun sequencing project. ACCESSION RRCB00000000 VERSION RRCB00000000.2 DBLINK BioProject: PRJNA489098 BioSample: SAMN02981239 KEYWORDS WGS. SOURCE Taeniopygia guttata (zebra finch) ORGANISM Taeniopygia guttata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia. REFERENCE 1 (bases 1 to 198) AUTHORS Rhie,A., McCarthy,S.A., Fedrigo,O., Damas,J., Formenti,G., Koren,S., Uliano-Silva,M., Chow,W., Fungtammasan,A., Kim,J., Lee,C., Ko,B.J., Chaisson,M., Gedman,G.L., Cantin,L.J., Thibaud-Nissen,F., Haggerty,L., Bista,I., Smith,M., Haase,B., Mountcastle,J., Winkler,S., Paez,S., Howard,J., Vernes,S.C., Lama,T.M., Grutzner,F., Warren,W.C., Balakrishnan,C.N., Burt,D., George,J.M., Biegler,M.T., Iorns,D., Digby,A., Eason,D., Robertson,B., Edwards,T., Wilkinson,M., Turner,G., Meyer,A., Kautt,A.F., Franchini,P., Detrich,H.W. III, Svardal,H., Wagner,M., Naylor,G.J.P., Pippel,M., Malinsky,M., Mooney,M., Simbirsky,M., Hannigan,B.T., Pesout,T., Houck,M., Misuraca,A., Kingan,S.B., Hall,R., Kronenberg,Z., Sovic,I., Dunn,C., Ning,Z., Hastie,A., Lee,J., Selvaraj,S., Green,R.E., Putnam,N.H., Gut,I., Ghurye,J., Garrison,E., Sims,Y., Collins,J., Pelan,S., Torrance,J., Tracey,A., Wood,J., Dagnew,R.E., Guan,D., London,S.E., Clayton,D.F., Mello,C.V., Friedrich,S.R., Lovell,P.V., Osipova,E., Al-Ajli,F.O., Secomandi,S., Kim,H., Theofanopoulou,C., Hiller,M., Zhou,Y., Harris,R.S., Makova,K.D., Medvedev,P., Hoffman,J., Masterson,P., Clark,K., Martin,F., Howe,K., Flicek,P., Walenz,B.P., Kwak,W., Clawson,H., Diekhans,M., Nassar,L., Paten,B., Kraus,R.H.S., Crawford,A.J., Gilbert,M.T.P., Zhang,G., Venkatesh,B., Murphy,R.W., Koepfli,K.P., Shapiro,B., Johnson,W.E., Di Palma,F., Marques-Bonet,T., Teeling,E.C., Warnow,T., Graves,J.M., Ryder,O.A., Haussler,D., O'Brien,S.J., Korlach,J., Lewin,H.A., Howe,K., Myers,E.W., Durbin,R., Phillippy,A.M. and Jarvis,E.D. TITLE Towards complete and error-free genome assemblies of all vertebrate species JOURNAL Nature 592 (7856), 737-746 (2021) PUBMED 33911273 REFERENCE 2 (bases 1 to 198) AUTHORS Formenti,G., Rhie,A., Balacco,J., Haase,B., Mountcastle,J., Fedrigo,O., Brown,S., Capodiferro,M.R., Al-Ajli,F.O., Ambrosini,R., Houde,P., Koren,S., Oliver,K., Smith,M., Skelton,J., Betteridge,E., Dolucan,J., Corton,C., Bista,I., Torrance,J., Tracey,A., Wood,J., Uliano-Silva,M., Howe,K., McCarthy,S., Winkler,S., Kwak,W., Korlach,J., Fungtammasan,A., Fordham,D., Costa,V., Mayes,S., Chiara,M., Horner,D.S., Myers,E., Durbin,R., Achilli,A., Braun,E.L., Phillippy,A.M. and Jarvis,E.D. CONSRTM Vertebrate Genomes Project Consortium TITLE Complete vertebrate mitogenomes reveal widespread repeats and gene duplications JOURNAL Genome Biol 22 (1), 120 (2021) PUBMED 33910595 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 198) AUTHORS Jarvis,E.D., Rhie,A., Korlach,J., Fedrigo,O., Mountcastle,J., Koren,S., Howe,K., Wood,J., Lewin,H., Damas,J., Balakrishnan,C., Clayton,D., London,S., George,J., Haase,B., Burt,D., Warren,W., Selvaraj,S. and Mello,C.V. TITLE Direct Submission JOURNAL Submitted (06-NOV-2018) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA REFERENCE 4 (bases 1 to 198) AUTHORS Jarvis,E.D., Rhie,A., Korlach,J., Formenti,G., Mountcastle,J., Koren,S., Howe,K., Chow,W., Wood,J., Lewin,H., Damas,J., Balakrishnan,C., Clayton,D., London,S., George,J., Haase,B., Burt,D., Warren,W., Selvaraj,S., Mello,C.V., Brown,S. and Fedrigo,O. TITLE Direct Submission JOURNAL Submitted (23-APR-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT On Apr 28, 2021 this sequence version replaced RRCB00000000.1. The Taeniopygia guttata whole genome shotgun (WGS) project has the project accession RRCB00000000. This version of the project (02) has the accession number RRCB02000000, and consists of sequences RRCB02000001-RRCB02000198. This assembly, bTaeGut1.4.pri, is a revised version 4 assembly of the male zebra finch bTaeGut1, using the VGP pipeline v1.7 to remove more false gene duplications, increase genome assembly continguity, and identify additional chromosomes. It includes the W sex chromosome accession CM018260.2 from the assembly of female bTaeGut2 (GCA_008822105.2) to include the W and Z sex chromosomes in the same assembly. ##Genome-Assembly-Data-START## Assembly Date :: 09-APR-2021 Assembly Method :: FALCON v. 5.1.1; FALCON unzip v. Nov2017(uc4); Purge_dups v. 1.0.1; Scaff10X v. 4.1.0; Bionano Solve BspQI/BssSI v. 3.4; Salsa2 v. 2.2.; Arrow polishing v. variantCaller 2.3.3; Merfin filtering v. 0.1; longranger align v. 2.2.2; freebayes polishing v. 1.3.1; gEVAL manual curation v. 2021-04-09; VGP pipeline v. 1.7 Assembly Name :: bTaeGut1.4.pri Diploid :: Principal Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 88.2x Sequencing Technology :: PacBio RSII; 10X Genomics linked reads; Bionano Genomics two enzymes; Arima Genomics Hi-C ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..198 /organism="Taeniopygia guttata" /mol_type="genomic DNA" /isolate="Black17" /db_xref="taxon:59729" /sex="male" WGS RRCB02000001-RRCB02000198 WGS_SCAFLD CM012081-CM012113 WGS_SCAFLD CM016613 WGS_SCAFLD CM025860-CM025865 WGS_SCAFLD CM030979 // LOCUS VHLE02000000 55 rc DNA linear MAM 11-AUG-2021 DEFINITION Lynx canadensis isolate LIC74, whole genome shotgun sequencing project. ACCESSION VHLE00000000 VERSION VHLE00000000.2 DBLINK BioProject: PRJNA489107 BioSample: SAMN09948483 KEYWORDS WGS. SOURCE Lynx canadensis (Canada lynx) ORGANISM Lynx canadensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Lynx. REFERENCE 1 (bases 1 to 55) AUTHORS Rhie,A., McCarthy,S.A., Fedrigo,O., Damas,J., Formenti,G., Koren,S., Uliano-Silva,M., Chow,W., Fungtammasan,A., Kim,J., Lee,C., Ko,B.J., Chaisson,M., Gedman,G.L., Cantin,L.J., Thibaud-Nissen,F., Haggerty,L., Bista,I., Smith,M., Haase,B., Mountcastle,J., Winkler,S., Paez,S., Howard,J., Vernes,S.C., Lama,T.M., Grutzner,F., Warren,W.C., Balakrishnan,C.N., Burt,D., George,J.M., Biegler,M.T., Iorns,D., Digby,A., Eason,D., Robertson,B., Edwards,T., Wilkinson,M., Turner,G., Meyer,A., Kautt,A.F., Franchini,P., Detrich,H.W. III, Svardal,H., Wagner,M., Naylor,G.J.P., Pippel,M., Malinsky,M., Mooney,M., Simbirsky,M., Hannigan,B.T., Pesout,T., Houck,M., Misuraca,A., Kingan,S.B., Hall,R., Kronenberg,Z., Sovic,I., Dunn,C., Ning,Z., Hastie,A., Lee,J., Selvaraj,S., Green,R.E., Putnam,N.H., Gut,I., Ghurye,J., Garrison,E., Sims,Y., Collins,J., Pelan,S., Torrance,J., Tracey,A., Wood,J., Dagnew,R.E., Guan,D., London,S.E., Clayton,D.F., Mello,C.V., Friedrich,S.R., Lovell,P.V., Osipova,E., Al-Ajli,F.O., Secomandi,S., Kim,H., Theofanopoulou,C., Hiller,M., Zhou,Y., Harris,R.S., Makova,K.D., Medvedev,P., Hoffman,J., Masterson,P., Clark,K., Martin,F., Howe,K., Flicek,P., Walenz,B.P., Kwak,W., Clawson,H., Diekhans,M., Nassar,L., Paten,B., Kraus,R.H.S., Crawford,A.J., Gilbert,M.T.P., Zhang,G., Venkatesh,B., Murphy,R.W., Koepfli,K.P., Shapiro,B., Johnson,W.E., Di Palma,F., Marques-Bonet,T., Teeling,E.C., Warnow,T., Graves,J.M., Ryder,O.A., Haussler,D., O'Brien,S.J., Korlach,J., Lewin,H.A., Howe,K., Myers,E.W., Durbin,R., Phillippy,A.M. and Jarvis,E.D. TITLE Towards complete and error-free genome assemblies of all vertebrate species JOURNAL Nature 592 (7856), 737-746 (2021) PUBMED 33911273 REFERENCE 2 (bases 1 to 55) AUTHORS Formenti,G., Rhie,A., Balacco,J., Haase,B., Mountcastle,J., Fedrigo,O., Brown,S., Capodiferro,M.R., Al-Ajli,F.O., Ambrosini,R., Houde,P., Koren,S., Oliver,K., Smith,M., Skelton,J., Betteridge,E., Dolucan,J., Corton,C., Bista,I., Torrance,J., Tracey,A., Wood,J., Uliano-Silva,M., Howe,K., McCarthy,S., Winkler,S., Kwak,W., Korlach,J., Fungtammasan,A., Fordham,D., Costa,V., Mayes,S., Chiara,M., Horner,D.S., Myers,E., Durbin,R., Achilli,A., Braun,E.L., Phillippy,A.M. and Jarvis,E.D. CONSRTM Vertebrate Genomes Project Consortium TITLE Complete vertebrate mitogenomes reveal widespread repeats and gene duplications JOURNAL Genome Biol 22 (1), 120 (2021) PUBMED 33910595 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 55) AUTHORS Lama,T., Johnson,W., Organ,J.F., Vashon,J., Fedrigo,O., Mountcastle,J., Haase,B., Rhie,A., Koren,S., Phillippy,A., Collins,J., Chow,W., Howe,K., Lewin,H., Durbin,R., Myers,G., O'Brien,S., Koepfli,K.-P., Ryder,O., Damas,J., Formenti,G. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (21-JUN-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA REFERENCE 4 (bases 1 to 55) AUTHORS Lama,T., Johnson,W., Organ,J.F., Vashon,J., Fedrigo,O., Mountcastle,J., Haase,B., Rhie,A., Koren,S., Phillippy,A., Collins,J., Chow,W., Howe,K., Lewin,H., Durbin,R., Myers,G., O'Brien,S., Koepfli,K.-P., Ryder,O., Damas,J., Formenti,G. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (08-JUN-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT On Jun 16, 2020 this sequence version replaced VHLE00000000.1. The Lynx canadensis whole genome shotgun (WGS) project has the project accession VHLE00000000. This version of the project (02) has the accession number VHLE02000000, and consists of sequences VHLE02000001-VHLE02000055. This assembly represents the principal haplotype of the diploid genome Lynx canadensis and includes the chromosomes. The alternate haplotype sequences are in WGS project VHLF00000000. ##Genome-Assembly-Data-START## Assembly Date :: 03-APR-2020 Assembly Method :: FALCON v. 5.1.1; FALCON-Unzip v. 1.0.2; purge_haplotigs v. bitbucket 7.10.2018; scaff10x v. 2.1; Bionano Solve 2 enzyme v. 3.2.1; Salsa2 v. 2.2; Arrow v. 5.1.0.26412; longranger align v. 2.2.2; freebayes v. 1.2.0; gEVAL manual curation v. 2020-04-03; VGP standard assembly pipeline v. 1.5 Assembly Name :: mLynCan4.pri.v2 Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 72.0x Sequencing Technology :: PacBio Sequel I; 10X genome; Bionano Genomics; Arima Genomics Hi-C ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..55 /organism="Lynx canadensis" /mol_type="genomic DNA" /isolate="LIC74" /db_xref="taxon:61383" /sex="male" /tissue_type="muscle, distal limb" /country="USA: Aroostook County, Maine" /lat_lon="42.2466 N 71.6746 W" /collection_date="2017-12-05" /collected_by="Tanya Lama" WGS VHLE02000001-VHLE02000055 WGS_SCAFLD CM017329-CM017348 WGS_SCAFLD CM023961 // LOCUS RXPB02000000 10857 rc DNA linear MAM 11-AUG-2021 DEFINITION Phyllostomus discolor isolate MPI-MPIP mPhyDis1, whole genome shotgun sequencing project. ACCESSION RXPB00000000 VERSION RXPB00000000.2 DBLINK BioProject: PRJNA489142 BioSample: SAMN09948786 KEYWORDS WGS. SOURCE Phyllostomus discolor (pale spear-nosed bat) ORGANISM Phyllostomus discolor Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Phyllostomidae; Phyllostominae; Phyllostomus. REFERENCE 1 (bases 1 to 10857) AUTHORS Koepfli,K.P., Paten,B. and O'Brien,S.J. CONSRTM Genome 10K Community of Scientists TITLE The Genome 10K Project: a way forward JOURNAL Annu Rev Anim Biosci 3, 57-111 (2015) PUBMED 25689317 REFERENCE 2 (bases 1 to 10857) AUTHORS Teeling,E.C., Vernes,S.C., Davalos,L.M., Ray,D.A., Gilbert,M.T.P. and Myers,E. CONSRTM Bat1K Consortium TITLE Bat Biology, Genomes, and the Bat1K Project: To Generate Chromosome-Level Genomes for All Living Bat Species JOURNAL Annu Rev Anim Biosci 6, 23-46 (2018) PUBMED 29166127 REFERENCE 3 (bases 1 to 10857) AUTHORS Jebb,D., Huang,Z., Pippel,M., Hughes,G.M., Lavrichenko,K., Devanna,P., Winkler,S., Jermiin,L.S., Skirmuntt,E.C., Katzourakis,A., Burkitt-Gray,L., Ray,D.A., Sullivan,K.A.M., Roscito,J.G., Kirilenko,B.M., Davalos,L.M., Corthals,A.P., Power,M.L., Jones,G., Ransome,R.D., Dechmann,D.K.N., Locatelli,A.G., Puechmaille,S.J., Fedrigo,O., Jarvis,E.D., Hiller,M., Vernes,S.C., Myers,E.W. and Teeling,E.C. TITLE Six reference-quality genomes reveal evolution of bat adaptations JOURNAL Nature 583 (7817), 578-584 (2020) PUBMED 32699395 REFERENCE 4 (bases 1 to 10857) AUTHORS Rhie,A., McCarthy,S.A., Fedrigo,O., Damas,J., Formenti,G., Koren,S., Uliano-Silva,M., Chow,W., Fungtammasan,A., Kim,J., Lee,C., Ko,B.J., Chaisson,M., Gedman,G.L., Cantin,L.J., Thibaud-Nissen,F., Haggerty,L., Bista,I., Smith,M., Haase,B., Mountcastle,J., Winkler,S., Paez,S., Howard,J., Vernes,S.C., Lama,T.M., Grutzner,F., Warren,W.C., Balakrishnan,C.N., Burt,D., George,J.M., Biegler,M.T., Iorns,D., Digby,A., Eason,D., Robertson,B., Edwards,T., Wilkinson,M., Turner,G., Meyer,A., Kautt,A.F., Franchini,P., Detrich,H.W. III, Svardal,H., Wagner,M., Naylor,G.J.P., Pippel,M., Malinsky,M., Mooney,M., Simbirsky,M., Hannigan,B.T., Pesout,T., Houck,M., Misuraca,A., Kingan,S.B., Hall,R., Kronenberg,Z., Sovic,I., Dunn,C., Ning,Z., Hastie,A., Lee,J., Selvaraj,S., Green,R.E., Putnam,N.H., Gut,I., Ghurye,J., Garrison,E., Sims,Y., Collins,J., Pelan,S., Torrance,J., Tracey,A., Wood,J., Dagnew,R.E., Guan,D., London,S.E., Clayton,D.F., Mello,C.V., Friedrich,S.R., Lovell,P.V., Osipova,E., Al-Ajli,F.O., Secomandi,S., Kim,H., Theofanopoulou,C., Hiller,M., Zhou,Y., Harris,R.S., Makova,K.D., Medvedev,P., Hoffman,J., Masterson,P., Clark,K., Martin,F., Howe,K., Flicek,P., Walenz,B.P., Kwak,W., Clawson,H., Diekhans,M., Nassar,L., Paten,B., Kraus,R.H.S., Crawford,A.J., Gilbert,M.T.P., Zhang,G., Venkatesh,B., Murphy,R.W., Koepfli,K.P., Shapiro,B., Johnson,W.E., Di Palma,F., Marques-Bonet,T., Teeling,E.C., Warnow,T., Graves,J.M., Ryder,O.A., Haussler,D., O'Brien,S.J., Korlach,J., Lewin,H.A., Howe,K., Myers,E.W., Durbin,R., Phillippy,A.M. and Jarvis,E.D. TITLE Towards complete and error-free genome assemblies of all vertebrate species JOURNAL Nature 592 (7856), 737-746 (2021) PUBMED 33911273 REFERENCE 5 (bases 1 to 10857) AUTHORS Formenti,G., Rhie,A., Balacco,J., Haase,B., Mountcastle,J., Fedrigo,O., Brown,S., Capodiferro,M.R., Al-Ajli,F.O., Ambrosini,R., Houde,P., Koren,S., Oliver,K., Smith,M., Skelton,J., Betteridge,E., Dolucan,J., Corton,C., Bista,I., Torrance,J., Tracey,A., Wood,J., Uliano-Silva,M., Howe,K., McCarthy,S., Winkler,S., Kwak,W., Korlach,J., Fungtammasan,A., Fordham,D., Costa,V., Mayes,S., Chiara,M., Horner,D.S., Myers,E., Durbin,R., Achilli,A., Braun,E.L., Phillippy,A.M. and Jarvis,E.D. CONSRTM Vertebrate Genomes Project Consortium TITLE Complete vertebrate mitogenomes reveal widespread repeats and gene duplications JOURNAL Genome Biol 22 (1), 120 (2021) PUBMED 33910595 REMARK Publication Status: Online-Only REFERENCE 6 (bases 1 to 10857) AUTHORS Vernes,S., Fedrigo,O., Teeling,E., Myers,G., Mountcastle,J., Haase,B., Rhie,A., Koren,S., Phillippy,A., Lewin,H., Damas,J., Howe,K. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (17-DEC-2018) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA REFERENCE 7 (bases 1 to 10857) AUTHORS Vernes,S., Fedrigo,O., Teeling,E., Myers,G., Mountcastle,J., Haase,B., Rhie,A., Koren,S., Phillippy,A., Lewin,H., Damas,J., Howe,K., Formenti,G. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (05-MAY-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT On May 11, 2020 this sequence version replaced RXPB00000000.1. The Phyllostomus discolor whole genome shotgun (WGS) project has the project accession RXPB00000000. This version of the project (02) has the accession number RXPB02000000, and consists of sequences RXPB02000001-RXPB02010857. This assembly represents the alternate haplotype of the diploid genome Phyllostomus discolor. The principal haplotype sequences are in WGS project RXPA00000000. ##Genome-Assembly-Data-START## Assembly Date :: 29-NOV-2019 Assembly Method :: FALCON v. 5.1.1; FALCON-Unzip 1.0.2 v. 1.0.2; scaff10X v. git 4.28.2018; Bionano Solve B spQI/BssSI v. 3.2.1; Salsa2 HiC v. 2.0; smrtanalysis Arrow polishing & gap filling v. 5.1.0.26412; longranger align v. 2.2.2; freebayes v. 1.2.0; purge_haplotigs v. bit 7.10.2018 Assembly Name :: mPhyDis1.alti.v3 Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 65.8x Sequencing Technology :: PacBio Sequel; 10X Genomics linked reads; Bioanano Genomics 2 enzyme; Arima Genomics HiC ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..10857 /organism="Phyllostomus discolor" /mol_type="genomic DNA" /isolate="MPI-MPIP mPhyDis1" /db_xref="taxon:89673" /sex="male" /tissue_type="muscle" /country="Germany: Munich, Collected from captive colony, LMU" /collection_date="25-Oct-2016" /collected_by="Pedro Rodenas-Cuadrado, Uwe Firzlaff, Sonja Vernes" WGS RXPB02000001-RXPB02010857 // LOCUS RXPA02000000 78 rc DNA linear MAM 11-AUG-2021 DEFINITION Phyllostomus discolor isolate MPI-MPIP mPhyDis1, whole genome shotgun sequencing project. ACCESSION RXPA00000000 VERSION RXPA00000000.2 DBLINK BioProject: PRJNA489141 BioSample: SAMN09948786 KEYWORDS WGS. SOURCE Phyllostomus discolor (pale spear-nosed bat) ORGANISM Phyllostomus discolor Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Phyllostomidae; Phyllostominae; Phyllostomus. REFERENCE 1 (bases 1 to 78) AUTHORS Jebb,D., Huang,Z., Pippel,M., Hughes,G.M., Lavrichenko,K., Devanna,P., Winkler,S., Jermiin,L.S., Skirmuntt,E.C., Katzourakis,A., Burkitt-Gray,L., Ray,D.A., Sullivan,K.A.M., Roscito,J.G., Kirilenko,B.M., Davalos,L.M., Corthals,A.P., Power,M.L., Jones,G., Ransome,R.D., Dechmann,D.K.N., Locatelli,A.G., Puechmaille,S.J., Fedrigo,O., Jarvis,E.D., Hiller,M., Vernes,S.C., Myers,E.W. and Teeling,E.C. TITLE Six reference-quality genomes reveal evolution of bat adaptations JOURNAL Nature 583 (7817), 578-584 (2020) PUBMED 32699395 REFERENCE 2 (bases 1 to 78) AUTHORS Rhie,A., McCarthy,S.A., Fedrigo,O., Damas,J., Formenti,G., Koren,S., Uliano-Silva,M., Chow,W., Fungtammasan,A., Kim,J., Lee,C., Ko,B.J., Chaisson,M., Gedman,G.L., Cantin,L.J., Thibaud-Nissen,F., Haggerty,L., Bista,I., Smith,M., Haase,B., Mountcastle,J., Winkler,S., Paez,S., Howard,J., Vernes,S.C., Lama,T.M., Grutzner,F., Warren,W.C., Balakrishnan,C.N., Burt,D., George,J.M., Biegler,M.T., Iorns,D., Digby,A., Eason,D., Robertson,B., Edwards,T., Wilkinson,M., Turner,G., Meyer,A., Kautt,A.F., Franchini,P., Detrich,H.W. III, Svardal,H., Wagner,M., Naylor,G.J.P., Pippel,M., Malinsky,M., Mooney,M., Simbirsky,M., Hannigan,B.T., Pesout,T., Houck,M., Misuraca,A., Kingan,S.B., Hall,R., Kronenberg,Z., Sovic,I., Dunn,C., Ning,Z., Hastie,A., Lee,J., Selvaraj,S., Green,R.E., Putnam,N.H., Gut,I., Ghurye,J., Garrison,E., Sims,Y., Collins,J., Pelan,S., Torrance,J., Tracey,A., Wood,J., Dagnew,R.E., Guan,D., London,S.E., Clayton,D.F., Mello,C.V., Friedrich,S.R., Lovell,P.V., Osipova,E., Al-Ajli,F.O., Secomandi,S., Kim,H., Theofanopoulou,C., Hiller,M., Zhou,Y., Harris,R.S., Makova,K.D., Medvedev,P., Hoffman,J., Masterson,P., Clark,K., Martin,F., Howe,K., Flicek,P., Walenz,B.P., Kwak,W., Clawson,H., Diekhans,M., Nassar,L., Paten,B., Kraus,R.H.S., Crawford,A.J., Gilbert,M.T.P., Zhang,G., Venkatesh,B., Murphy,R.W., Koepfli,K.P., Shapiro,B., Johnson,W.E., Di Palma,F., Marques-Bonet,T., Teeling,E.C., Warnow,T., Graves,J.M., Ryder,O.A., Haussler,D., O'Brien,S.J., Korlach,J., Lewin,H.A., Howe,K., Myers,E.W., Durbin,R., Phillippy,A.M. and Jarvis,E.D. TITLE Towards complete and error-free genome assemblies of all vertebrate species JOURNAL Nature 592 (7856), 737-746 (2021) PUBMED 33911273 REFERENCE 3 (bases 1 to 78) AUTHORS Formenti,G., Rhie,A., Balacco,J., Haase,B., Mountcastle,J., Fedrigo,O., Brown,S., Capodiferro,M.R., Al-Ajli,F.O., Ambrosini,R., Houde,P., Koren,S., Oliver,K., Smith,M., Skelton,J., Betteridge,E., Dolucan,J., Corton,C., Bista,I., Torrance,J., Tracey,A., Wood,J., Uliano-Silva,M., Howe,K., McCarthy,S., Winkler,S., Kwak,W., Korlach,J., Fungtammasan,A., Fordham,D., Costa,V., Mayes,S., Chiara,M., Horner,D.S., Myers,E., Durbin,R., Achilli,A., Braun,E.L., Phillippy,A.M. and Jarvis,E.D. CONSRTM Vertebrate Genomes Project Consortium TITLE Complete vertebrate mitogenomes reveal widespread repeats and gene duplications JOURNAL Genome Biol 22 (1), 120 (2021) PUBMED 33910595 REMARK Publication Status: Online-Only REFERENCE 4 (bases 1 to 78) AUTHORS Vernes,S., Fedrigo,O., Teeling,E., Myers,G., Mountcastle,J., Haase,B., Rhie,A., Koren,S., Phillippy,A., Lewin,H., Damas,J., Howe,K. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (17-DEC-2018) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA REFERENCE 5 (bases 1 to 78) AUTHORS Vernes,S., Fedrigo,O., Teeling,E., Myers,G., Mountcastle,J., Haase,B., Rhie,A., Koren,S., Phillippy,A., Lewin,H., Damas,J., Howe,K., Formenti,G. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (05-MAY-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT On May 11, 2020 this sequence version replaced RXPA00000000.1. The Phyllostomus discolor whole genome shotgun (WGS) project has the project accession RXPA00000000. This version of the project (02) has the accession number RXPA02000000, and consists of sequences RXPA02000001-RXPA02000078. This assembly represents the principal haplotype of the diploid genome Phyllostomus discolor and includes the chromosomes. The alternate haplotype sequences are in WGS project RXPB00000000. ##Genome-Assembly-Data-START## Assembly Date :: 29-NOV-2019 Assembly Method :: FALCON v. 5.1.1; FALCON-Unzip v. 1.0.2; scaff10X v. git 4.28.2018; Bionano Solve B v. spQI/BssSI 3.2.1; Salsa2 HiC v. 2.0; smrtanalysis Arrow polishing & gap filling v. 5.1.0.26412; longranger align v. 2.2.2; freebayes v. 1.2.0; purge_haplotigs v. bit 7.10.2018; gEVAL manual curation v. 2019-11-29 Assembly Name :: mPhyDis1.pri.v3 Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 65.8x Sequencing Technology :: PacBio Sequel; 10X Genomics linked reads; Bioanano Genomics 2 enzyme; Arima Genomics HiC ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..78 /organism="Phyllostomus discolor" /mol_type="genomic DNA" /isolate="MPI-MPIP mPhyDis1" /db_xref="taxon:89673" /sex="male" /tissue_type="muscle" /country="Germany: Munich, Collected from captive colony, LMU" /collection_date="25-Oct-2016" /collected_by="Pedro Rodenas-Cuadrado, Uwe Firzlaff, Sonja Vernes" WGS RXPA02000001-RXPA02000078 WGS_SCAFLD CM014254-CM014268 WGS_SCAFLD CM016611 WGS_SCAFLD CM023025-CM023026 // LOCUS RZJU02000000 5843 rc DNA linear MAM 11-AUG-2021 DEFINITION Ornithorhynchus anatinus isolate Pmale09, whole genome shotgun sequencing project. ACCESSION RZJU00000000 VERSION RZJU00000000.2 DBLINK BioProject: PRJNA489115 BioSample: SAMN08537700 KEYWORDS WGS. SOURCE Ornithorhynchus anatinus (platypus) ORGANISM Ornithorhynchus anatinus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Monotremata; Ornithorhynchidae; Ornithorhynchus. REFERENCE 1 (bases 1 to 5843) AUTHORS Zhou,Y., Shearwin-Whyatt,L., Li,J., Song,Z., Hayakawa,T., Stevens,D., Fenelon,J.C., Peel,E., Cheng,Y., Pajpach,F., Bradley,N., Suzuki,H., Nikaido,M., Damas,J., Daish,T., Perry,T., Zhu,Z., Geng,Y., Rhie,A., Sims,Y., Wood,J., Haase,B., Mountcastle,J., Fedrigo,O., Li,Q., Yang,H., Wang,J., Johnston,S.D., Phillippy,A.M., Howe,K., Jarvis,E.D., Ryder,O.A., Kaessmann,H., Donnelly,P., Korlach,J., Lewin,H.A., Graves,J., Belov,K., Renfree,M.B., Grutzner,F., Zhou,Q. and Zhang,G. TITLE Platypus and echidna genomes reveal mammalian biology and evolution JOURNAL Nature 592 (7856), 756-762 (2021) PUBMED 33408411 REFERENCE 2 (bases 1 to 5843) AUTHORS Rhie,A., McCarthy,S.A., Fedrigo,O., Damas,J., Formenti,G., Koren,S., Uliano-Silva,M., Chow,W., Fungtammasan,A., Kim,J., Lee,C., Ko,B.J., Chaisson,M., Gedman,G.L., Cantin,L.J., Thibaud-Nissen,F., Haggerty,L., Bista,I., Smith,M., Haase,B., Mountcastle,J., Winkler,S., Paez,S., Howard,J., Vernes,S.C., Lama,T.M., Grutzner,F., Warren,W.C., Balakrishnan,C.N., Burt,D., George,J.M., Biegler,M.T., Iorns,D., Digby,A., Eason,D., Robertson,B., Edwards,T., Wilkinson,M., Turner,G., Meyer,A., Kautt,A.F., Franchini,P., Detrich,H.W. III, Svardal,H., Wagner,M., Naylor,G.J.P., Pippel,M., Malinsky,M., Mooney,M., Simbirsky,M., Hannigan,B.T., Pesout,T., Houck,M., Misuraca,A., Kingan,S.B., Hall,R., Kronenberg,Z., Sovic,I., Dunn,C., Ning,Z., Hastie,A., Lee,J., Selvaraj,S., Green,R.E., Putnam,N.H., Gut,I., Ghurye,J., Garrison,E., Sims,Y., Collins,J., Pelan,S., Torrance,J., Tracey,A., Wood,J., Dagnew,R.E., Guan,D., London,S.E., Clayton,D.F., Mello,C.V., Friedrich,S.R., Lovell,P.V., Osipova,E., Al-Ajli,F.O., Secomandi,S., Kim,H., Theofanopoulou,C., Hiller,M., Zhou,Y., Harris,R.S., Makova,K.D., Medvedev,P., Hoffman,J., Masterson,P., Clark,K., Martin,F., Howe,K., Flicek,P., Walenz,B.P., Kwak,W., Clawson,H., Diekhans,M., Nassar,L., Paten,B., Kraus,R.H.S., Crawford,A.J., Gilbert,M.T.P., Zhang,G., Venkatesh,B., Murphy,R.W., Koepfli,K.P., Shapiro,B., Johnson,W.E., Di Palma,F., Marques-Bonet,T., Teeling,E.C., Warnow,T., Graves,J.M., Ryder,O.A., Haussler,D., O'Brien,S.J., Korlach,J., Lewin,H.A., Howe,K., Myers,E.W., Durbin,R., Phillippy,A.M. and Jarvis,E.D. TITLE Towards complete and error-free genome assemblies of all vertebrate species JOURNAL Nature 592 (7856), 737-746 (2021) PUBMED 33911273 REFERENCE 3 (bases 1 to 5843) AUTHORS Formenti,G., Rhie,A., Balacco,J., Haase,B., Mountcastle,J., Fedrigo,O., Brown,S., Capodiferro,M.R., Al-Ajli,F.O., Ambrosini,R., Houde,P., Koren,S., Oliver,K., Smith,M., Skelton,J., Betteridge,E., Dolucan,J., Corton,C., Bista,I., Torrance,J., Tracey,A., Wood,J., Uliano-Silva,M., Howe,K., McCarthy,S., Winkler,S., Kwak,W., Korlach,J., Fungtammasan,A., Fordham,D., Costa,V., Mayes,S., Chiara,M., Horner,D.S., Myers,E., Durbin,R., Achilli,A., Braun,E.L., Phillippy,A.M. and Jarvis,E.D. CONSRTM Vertebrate Genomes Project Consortium TITLE Complete vertebrate mitogenomes reveal widespread repeats and gene duplications JOURNAL Genome Biol 22 (1), 120 (2021) PUBMED 33910595 REMARK Publication Status: Online-Only REFERENCE 4 (bases 1 to 5843) AUTHORS Zhang,G., Zhou,Y., Grultzner,F., Zhou,Q., Jarvis,E.D., Fedrigo,O., Howard,J., Korlach,J., Rhie,A., Howe,K., Woods,J., Damas,J., Lewin,H., Durbin,R. and Phillippy,A. TITLE Direct Submission JOURNAL Submitted (14-DEC-2018) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA REFERENCE 5 (bases 1 to 5843) AUTHORS Zhang,G., Zhou,Y., Grultzner,F., Zhou,Q., Jarvis,E.D., Fedrigo,O., Howard,J., Korlach,J., Rhie,A., Howe,K., Woods,J., Lewin,H., Durbin,R., Formenti,G. and Phillippy,A. TITLE Direct Submission JOURNAL Submitted (09-MAR-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT On Apr 6, 2020 this sequence version replaced RZJU00000000.1. The Ornithorhynchus anatinus whole genome shotgun (WGS) project has the project accession RZJU00000000. This version of the project (02) has the accession number RZJU02000000, and consists of sequences RZJU02000001-RZJU02005843. This assembly represents the alternate haplotype of the diploid genome Ornithorhynchus anatinus. The principal haplotype sequences are in WGS project RZJT00000000. ##Genome-Assembly-Data-START## Assembly Date :: 06-DEC-2019 Assembly Method :: FALCON v. 5.1.1; FALCON Unzip v. 1.0.2; purge_haplotigs v. bit 7.10.2018; scaff10X v. git 4.28.2018; Bionano Solve DLS v. 3.2.1; Salsa2 HiC v. 2.0; smrtanalysis Arrow polishing & gap filling v. 5.1.0.26412; longranger align v. 2.2.2; freebayes v. 1.2.0 Assembly Name :: mOrnAna1.alt.v3 Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 58.8x Sequencing Technology :: PacBio RSII; 10X Genomics linked reads; Bionano Genomics DLS; Dovetail Genomics HiC; Arima Genomics ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..5843 /organism="Ornithorhynchus anatinus" /mol_type="genomic DNA" /isolate="Pmale09" /db_xref="taxon:9258" /sex="male" /tissue_type="liver; muscle" WGS RZJU02000001-RZJU02005843 // LOCUS RZJT02000000 322 rc DNA linear MAM 11-AUG-2021 DEFINITION Ornithorhynchus anatinus isolate Pmale09, whole genome shotgun sequencing project. ACCESSION RZJT00000000 VERSION RZJT00000000.2 DBLINK BioProject: PRJNA489114 BioSample: SAMN08537700 KEYWORDS WGS. SOURCE Ornithorhynchus anatinus (platypus) ORGANISM Ornithorhynchus anatinus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Monotremata; Ornithorhynchidae; Ornithorhynchus. REFERENCE 1 (bases 1 to 322) AUTHORS Zhou,Y., Shearwin-Whyatt,L., Li,J., Song,Z., Hayakawa,T., Stevens,D., Fenelon,J.C., Peel,E., Cheng,Y., Pajpach,F., Bradley,N., Suzuki,H., Nikaido,M., Damas,J., Daish,T., Perry,T., Zhu,Z., Geng,Y., Rhie,A., Sims,Y., Wood,J., Haase,B., Mountcastle,J., Fedrigo,O., Li,Q., Yang,H., Wang,J., Johnston,S.D., Phillippy,A.M., Howe,K., Jarvis,E.D., Ryder,O.A., Kaessmann,H., Donnelly,P., Korlach,J., Lewin,H.A., Graves,J., Belov,K., Renfree,M.B., Grutzner,F., Zhou,Q. and Zhang,G. TITLE Platypus and echidna genomes reveal mammalian biology and evolution JOURNAL Nature 592 (7856), 756-762 (2021) PUBMED 33408411 REFERENCE 2 (bases 1 to 322) AUTHORS Rhie,A., McCarthy,S.A., Fedrigo,O., Damas,J., Formenti,G., Koren,S., Uliano-Silva,M., Chow,W., Fungtammasan,A., Kim,J., Lee,C., Ko,B.J., Chaisson,M., Gedman,G.L., Cantin,L.J., Thibaud-Nissen,F., Haggerty,L., Bista,I., Smith,M., Haase,B., Mountcastle,J., Winkler,S., Paez,S., Howard,J., Vernes,S.C., Lama,T.M., Grutzner,F., Warren,W.C., Balakrishnan,C.N., Burt,D., George,J.M., Biegler,M.T., Iorns,D., Digby,A., Eason,D., Robertson,B., Edwards,T., Wilkinson,M., Turner,G., Meyer,A., Kautt,A.F., Franchini,P., Detrich,H.W. III, Svardal,H., Wagner,M., Naylor,G.J.P., Pippel,M., Malinsky,M., Mooney,M., Simbirsky,M., Hannigan,B.T., Pesout,T., Houck,M., Misuraca,A., Kingan,S.B., Hall,R., Kronenberg,Z., Sovic,I., Dunn,C., Ning,Z., Hastie,A., Lee,J., Selvaraj,S., Green,R.E., Putnam,N.H., Gut,I., Ghurye,J., Garrison,E., Sims,Y., Collins,J., Pelan,S., Torrance,J., Tracey,A., Wood,J., Dagnew,R.E., Guan,D., London,S.E., Clayton,D.F., Mello,C.V., Friedrich,S.R., Lovell,P.V., Osipova,E., Al-Ajli,F.O., Secomandi,S., Kim,H., Theofanopoulou,C., Hiller,M., Zhou,Y., Harris,R.S., Makova,K.D., Medvedev,P., Hoffman,J., Masterson,P., Clark,K., Martin,F., Howe,K., Flicek,P., Walenz,B.P., Kwak,W., Clawson,H., Diekhans,M., Nassar,L., Paten,B., Kraus,R.H.S., Crawford,A.J., Gilbert,M.T.P., Zhang,G., Venkatesh,B., Murphy,R.W., Koepfli,K.P., Shapiro,B., Johnson,W.E., Di Palma,F., Marques-Bonet,T., Teeling,E.C., Warnow,T., Graves,J.M., Ryder,O.A., Haussler,D., O'Brien,S.J., Korlach,J., Lewin,H.A., Howe,K., Myers,E.W., Durbin,R., Phillippy,A.M. and Jarvis,E.D. TITLE Towards complete and error-free genome assemblies of all vertebrate species JOURNAL Nature 592 (7856), 737-746 (2021) PUBMED 33911273 REFERENCE 3 (bases 1 to 322) AUTHORS Formenti,G., Rhie,A., Balacco,J., Haase,B., Mountcastle,J., Fedrigo,O., Brown,S., Capodiferro,M.R., Al-Ajli,F.O., Ambrosini,R., Houde,P., Koren,S., Oliver,K., Smith,M., Skelton,J., Betteridge,E., Dolucan,J., Corton,C., Bista,I., Torrance,J., Tracey,A., Wood,J., Uliano-Silva,M., Howe,K., McCarthy,S., Winkler,S., Kwak,W., Korlach,J., Fungtammasan,A., Fordham,D., Costa,V., Mayes,S., Chiara,M., Horner,D.S., Myers,E., Durbin,R., Achilli,A., Braun,E.L., Phillippy,A.M. and Jarvis,E.D. CONSRTM Vertebrate Genomes Project Consortium TITLE Complete vertebrate mitogenomes reveal widespread repeats and gene duplications JOURNAL Genome Biol 22 (1), 120 (2021) PUBMED 33910595 REMARK Publication Status: Online-Only REFERENCE 4 (bases 1 to 322) AUTHORS Zhang,G., Zhou,Y., Grultzner,F., Zhou,Q., Jarvis,E.D., Fedrigo,O., Howard,J., Korlach,J., Rhie,A., Howe,K., Woods,J., Lewin,H., Durbin,R. and Phillippy,A. TITLE Direct Submission JOURNAL Submitted (18-DEC-2018) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA REFERENCE 5 (bases 1 to 322) AUTHORS Zhang,G., Zhou,Y., Grultzner,F., Zhou,Q., Jarvis,E.D., Fedrigo,O., Howard,J., Korlach,J., Rhie,A., Howe,K., Woods,J., Lewin,H., Durbin,R., Formenti,G. and Phillippy,A. TITLE Direct Submission JOURNAL Submitted (09-MAR-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT On Apr 6, 2020 this sequence version replaced RZJT00000000.1. The Ornithorhynchus anatinus whole genome shotgun (WGS) project has the project accession RZJT00000000. This version of the project (02) has the accession number RZJT02000000, and consists of sequences RZJT02000001-RZJT02000322. This assembly represents the principal haplotype of the diploid genome Ornithorhynchus anatinus and includes the chromosomes. The alternate haplotype sequences are in WGS project RZJU00000000. ##Genome-Assembly-Data-START## Assembly Date :: 06-DEC-2019 Assembly Method :: FALCON v. 5.1.1; FALCON Unzip v. 1.0.2; purge_haplotigs v. bit 7.10.2018; scaff10X v. git 4.28.2018; Bionano Solve DLS v. 3.2.1; Salsa2 HiC v. 2.0; smrtanalysis Arrow polishing & gap fillingt v. 5.1.0.26412; longranger align v. 2.2.2; freebayes v. 1.2.0; gEVAL manual curation v. 2019-12-06 Assembly Name :: mOrnAna1.pri.v4 Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 58.8x Sequencing Technology :: PacBio RSII; 10X Genomics linked reads; Bionano Genomics DLS; Dovetail Genomics HiC; Arima Genomics ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..322 /organism="Ornithorhynchus anatinus" /mol_type="genomic DNA" /isolate="Pmale09" /db_xref="taxon:9258" /sex="male" /tissue_type="liver; muscle" WGS RZJT02000001-RZJT02000322 WGS_SCAFLD CM014200-CM014225 WGS_SCAFLD CM016609 WGS_SCAFLD CM022557-CM022558 WGS_SCAFLD CM026824-CM026826 // LOCUS STFU02000000 541 rc DNA linear VRT 11-AUG-2021 DEFINITION Taeniopygia guttata isolate Blue55, whole genome shotgun sequencing project. ACCESSION STFU00000000 VERSION STFU00000000.2 DBLINK BioProject: PRJNA489186 BioSample: SAMN09946140 KEYWORDS WGS. SOURCE Taeniopygia guttata (zebra finch) ORGANISM Taeniopygia guttata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia. REFERENCE 1 (bases 1 to 541) AUTHORS Koepfli,K.P., Paten,B. and O'Brien,S.J. CONSRTM Genome 10K Community of Scientists TITLE The Genome 10K Project: a way forward JOURNAL Annu Rev Anim Biosci 3, 57-111 (2015) PUBMED 25689317 REFERENCE 2 (bases 1 to 541) AUTHORS Zhang,G., Rahbek,C., Graves,G.R., Lei,F., Jarvis,E.D. and Gilbert,M.T. TITLE Genomics: Bird sequencing project takes off JOURNAL Nature 522 (7554), 34 (2015) PUBMED 26040883 REFERENCE 3 (bases 1 to 541) AUTHORS Rhie,A., McCarthy,S.A., Fedrigo,O., Damas,J., Formenti,G., Koren,S., Uliano-Silva,M., Chow,W., Fungtammasan,A., Kim,J., Lee,C., Ko,B.J., Chaisson,M., Gedman,G.L., Cantin,L.J., Thibaud-Nissen,F., Haggerty,L., Bista,I., Smith,M., Haase,B., Mountcastle,J., Winkler,S., Paez,S., Howard,J., Vernes,S.C., Lama,T.M., Grutzner,F., Warren,W.C., Balakrishnan,C.N., Burt,D., George,J.M., Biegler,M.T., Iorns,D., Digby,A., Eason,D., Robertson,B., Edwards,T., Wilkinson,M., Turner,G., Meyer,A., Kautt,A.F., Franchini,P., Detrich,H.W. III, Svardal,H., Wagner,M., Naylor,G.J.P., Pippel,M., Malinsky,M., Mooney,M., Simbirsky,M., Hannigan,B.T., Pesout,T., Houck,M., Misuraca,A., Kingan,S.B., Hall,R., Kronenberg,Z., Sovic,I., Dunn,C., Ning,Z., Hastie,A., Lee,J., Selvaraj,S., Green,R.E., Putnam,N.H., Gut,I., Ghurye,J., Garrison,E., Sims,Y., Collins,J., Pelan,S., Torrance,J., Tracey,A., Wood,J., Dagnew,R.E., Guan,D., London,S.E., Clayton,D.F., Mello,C.V., Friedrich,S.R., Lovell,P.V., Osipova,E., Al-Ajli,F.O., Secomandi,S., Kim,H., Theofanopoulou,C., Hiller,M., Zhou,Y., Harris,R.S., Makova,K.D., Medvedev,P., Hoffman,J., Masterson,P., Clark,K., Martin,F., Howe,K., Flicek,P., Walenz,B.P., Kwak,W., Clawson,H., Diekhans,M., Nassar,L., Paten,B., Kraus,R.H.S., Crawford,A.J., Gilbert,M.T.P., Zhang,G., Venkatesh,B., Murphy,R.W., Koepfli,K.P., Shapiro,B., Johnson,W.E., Di Palma,F., Marques-Bonet,T., Teeling,E.C., Warnow,T., Graves,J.M., Ryder,O.A., Haussler,D., O'Brien,S.J., Korlach,J., Lewin,H.A., Howe,K., Myers,E.W., Durbin,R., Phillippy,A.M. and Jarvis,E.D. TITLE Towards complete and error-free genome assemblies of all vertebrate species JOURNAL Nature 592 (7856), 737-746 (2021) PUBMED 33911273 REFERENCE 4 (bases 1 to 541) AUTHORS Jarvis,E.D., Rhie,A., Fedrigo,O., Mountcastle,J., Biegler,M., Howe,K., Wood,J., Lewin,H., Damas,J., Balakrishnan,C., Clayton,D., London,S., George,J., Haase,B., Formenti,G., Burt,D., Warren,W., Mello,C.V. and Phillippy,A. TITLE Direct Submission JOURNAL Submitted (12-APR-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA REFERENCE 5 (bases 1 to 541) AUTHORS Jarvis,E.D., Rhie,A., Fedrigo,O., Mountcastle,J., Biegler,M., Howe,K., Wood,J., Lewin,H., Damas,J., Balakrishnan,C., Clayton,D., London,S., George,J., Haase,B., Formenti,G., Burt,D., Warren,W., Mello,C.V. and Phillippy,A. TITLE Direct Submission JOURNAL Submitted (09-MAR-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT On Mar 27, 2020 this sequence version replaced STFU00000000.1. The Taeniopygia guttata whole genome shotgun (WGS) project has the project accession STFU00000000. This version of the project (02) has the accession number STFU02000000, and consists of sequences STFU02000001-STFU02000541. This assembly represents the principal haplotype of the diploid genome Taeniopygia guttata and includes the chromosomes. The alternate haplotype sequences are in WGS project STFT00000000. ##Genome-Assembly-Data-START## Assembly Date :: 12-NOV-2019 Assembly Method :: FALCON v. 5.1.1; FALCON-Unzip v. 1.0.2; scaff10x v. 2.1; Bionano Solve 2 enzyme v. 3.2.1; Salsa2 v. 2.0; smrtanalysis Arrow polishing & gap filling v. 5.1.0.26412; longranger align v. 2.2.2; freebayes v. 1.2.0; gEVAL manual curation v. 2019-11-12; VGP standard assembly pipeline v. 1.0 Assembly Name :: bTaeGut2.pri.v2 Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 101.2x Sequencing Technology :: PacBio Sequel I; 10X genome; Bionano Genomics; Arima Genomics Hi-C ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..541 /organism="Taeniopygia guttata" /mol_type="genomic DNA" /isolate="Blue55" /db_xref="taxon:59729" /sex="female" /tissue_type="Muscle, blood, brain" /dev_stage="adult" /country="USA" /lat_lon="36.0014 N 78.9382 W" /collected_by="Matt Biegler, Duke University and Rockefeller University" WGS STFU02000001-STFU02000541 WGS_SCAFLD CM020832-CM020863 WGS_SCAFLD CM020865 // LOCUS VOHI02000000 205 rc DNA linear VRT 11-AUG-2021 DEFINITION Taeniopygia guttata isolate Blue55, whole genome shotgun sequencing project. ACCESSION VOHI00000000 VERSION VOHI00000000.2 DBLINK BioProject: PRJNA555095 BioSample: SAMN09946140 KEYWORDS WGS. SOURCE Taeniopygia guttata (zebra finch) ORGANISM Taeniopygia guttata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia. REFERENCE 1 (bases 1 to 205) AUTHORS Rhie,A., McCarthy,S.A., Fedrigo,O., Damas,J., Formenti,G., Koren,S., Uliano-Silva,M., Chow,W., Fungtammasan,A., Kim,J., Lee,C., Ko,B.J., Chaisson,M., Gedman,G.L., Cantin,L.J., Thibaud-Nissen,F., Haggerty,L., Bista,I., Smith,M., Haase,B., Mountcastle,J., Winkler,S., Paez,S., Howard,J., Vernes,S.C., Lama,T.M., Grutzner,F., Warren,W.C., Balakrishnan,C.N., Burt,D., George,J.M., Biegler,M.T., Iorns,D., Digby,A., Eason,D., Robertson,B., Edwards,T., Wilkinson,M., Turner,G., Meyer,A., Kautt,A.F., Franchini,P., Detrich,H.W. III, Svardal,H., Wagner,M., Naylor,G.J.P., Pippel,M., Malinsky,M., Mooney,M., Simbirsky,M., Hannigan,B.T., Pesout,T., Houck,M., Misuraca,A., Kingan,S.B., Hall,R., Kronenberg,Z., Sovic,I., Dunn,C., Ning,Z., Hastie,A., Lee,J., Selvaraj,S., Green,R.E., Putnam,N.H., Gut,I., Ghurye,J., Garrison,E., Sims,Y., Collins,J., Pelan,S., Torrance,J., Tracey,A., Wood,J., Dagnew,R.E., Guan,D., London,S.E., Clayton,D.F., Mello,C.V., Friedrich,S.R., Lovell,P.V., Osipova,E., Al-Ajli,F.O., Secomandi,S., Kim,H., Theofanopoulou,C., Hiller,M., Zhou,Y., Harris,R.S., Makova,K.D., Medvedev,P., Hoffman,J., Masterson,P., Clark,K., Martin,F., Howe,K., Flicek,P., Walenz,B.P., Kwak,W., Clawson,H., Diekhans,M., Nassar,L., Paten,B., Kraus,R.H.S., Crawford,A.J., Gilbert,M.T.P., Zhang,G., Venkatesh,B., Murphy,R.W., Koepfli,K.P., Shapiro,B., Johnson,W.E., Di Palma,F., Marques-Bonet,T., Teeling,E.C., Warnow,T., Graves,J.M., Ryder,O.A., Haussler,D., O'Brien,S.J., Korlach,J., Lewin,H.A., Howe,K., Myers,E.W., Durbin,R., Phillippy,A.M. and Jarvis,E.D. TITLE Towards complete and error-free genome assemblies of all vertebrate species JOURNAL Nature 592 (7856), 737-746 (2021) PUBMED 33911273 REFERENCE 2 (bases 1 to 205) AUTHORS Jarvis,E.D., Rhie,A., Mountcastle,J., Biegler,M., Howe,K., Wood,J., Lewin,H., Damas,J., Balakrishnan,C., Clayton,D., London,S., George,J., Haase,B., Formenti,G., Burt,D., Warren,W., Mello,C.V. and Phillippy,A. TITLE Direct Submission JOURNAL Submitted (10-SEP-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA REFERENCE 3 (bases 1 to 205) AUTHORS Jarvis,E.D., Rhie,A., Mountcastle,J., Biegler,M., Howe,K., Wood,J., Lewin,H., Damas,J., Balakrishnan,C., Clayton,D., London,S., George,J., Haase,B., Formenti,G., Burt,D., Warren,W., Mello,C.V. and Phillippy,A. TITLE Direct Submission JOURNAL Submitted (06-FEB-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT On Feb 10, 2020 this sequence version replaced VOHI00000000.1. The Taeniopygia guttata whole genome shotgun (WGS) project has the project accession VOHI00000000. This version of the project (02) has the accession number VOHI02000000, and consists of sequences VOHI02000001-VOHI02000205. This assembly represents the principal haplotype of the diploid genome Taeniopygia guttata. This is the VGP 1.5 trio assembly merged haplotype data and includes the chromosomes from the male as well as the female W chromosome and the mitochondrion. The alternate maternal and paternal haplotype sequences are in WGS projects VOHG00000000 and VOHH00000000 respectively. ##Genome-Assembly-Data-START## Assembly Date :: 24-JAN-2020 Assembly Method :: TrioCanu v. 1.7; Scaff10x 2.1 v. git 4.28.2018; Bionano Solve 2 enzyme v. 3.2.1; Salsa v. 2.2; Arrow v. 5.1.0.26412; gEVAL manual curation v. 2019-11-12; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; VGP Trio binning assembly pipeline v. 1.0 Assembly Name :: bTaeGut2.pat.W.v2 Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 82.5x Sequencing Technology :: PacBio Sequel I; 10X Genomics chromium; Bionano Genomics 2 enzyme; Arima Genomics Hi-C; Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..205 /organism="Taeniopygia guttata" /mol_type="genomic DNA" /isolate="Blue55" /db_xref="taxon:59729" /sex="female" /tissue_type="Muscle, blood, brain" /dev_stage="adult" /country="USA" /lat_lon="36.0014 N 78.9382 W" /collected_by="Matt Biegler, Duke University and Rockefeller University" WGS VOHI02000001-VOHI02000205 WGS_SCAFLD CM018229-CM018260 WGS_SCAFLD CM021175 // LOCUS VOHG03000000 206 rc DNA linear VRT 11-AUG-2021 DEFINITION Taeniopygia guttata isolate Blue55, whole genome shotgun sequencing project. ACCESSION VOHG00000000 VERSION VOHG00000000.3 DBLINK BioProject: PRJNA489100 BioSample: SAMN09946140 KEYWORDS WGS. SOURCE Taeniopygia guttata (zebra finch) ORGANISM Taeniopygia guttata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia. REFERENCE 1 (bases 1 to 206) AUTHORS Koepfli,K.P., Paten,B. and O'Brien,S.J. CONSRTM Genome 10K Community of Scientists TITLE The Genome 10K Project: a way forward JOURNAL Annu Rev Anim Biosci 3, 57-111 (2015) PUBMED 25689317 REFERENCE 2 (bases 1 to 206) AUTHORS Zhang,G., Rahbek,C., Graves,G.R., Lei,F., Jarvis,E.D. and Gilbert,M.T. TITLE Genomics: Bird sequencing project takes off JOURNAL Nature 522 (7554), 34 (2015) PUBMED 26040883 REFERENCE 3 (bases 1 to 206) AUTHORS Koren,S., Rhie,A., Walenz,B.P., Dilthey,A.T., Bickhart,D.M., Kingan,S.B., Hiendleder,S., Williams,J.L., Smith,T.P.L. and Phillippy,A.M. TITLE Complete assembly of parental haplotypes with trio binning JOURNAL bioRxiv (2018) In press REMARK DOI: 10.1101/271486 REFERENCE 4 (bases 1 to 206) AUTHORS Rhie,A., McCarthy,S.A., Fedrigo,O., Damas,J., Formenti,G., Koren,S., Uliano-Silva,M., Chow,W., Fungtammasan,A., Kim,J., Lee,C., Ko,B.J., Chaisson,M., Gedman,G.L., Cantin,L.J., Thibaud-Nissen,F., Haggerty,L., Bista,I., Smith,M., Haase,B., Mountcastle,J., Winkler,S., Paez,S., Howard,J., Vernes,S.C., Lama,T.M., Grutzner,F., Warren,W.C., Balakrishnan,C.N., Burt,D., George,J.M., Biegler,M.T., Iorns,D., Digby,A., Eason,D., Robertson,B., Edwards,T., Wilkinson,M., Turner,G., Meyer,A., Kautt,A.F., Franchini,P., Detrich,H.W. III, Svardal,H., Wagner,M., Naylor,G.J.P., Pippel,M., Malinsky,M., Mooney,M., Simbirsky,M., Hannigan,B.T., Pesout,T., Houck,M., Misuraca,A., Kingan,S.B., Hall,R., Kronenberg,Z., Sovic,I., Dunn,C., Ning,Z., Hastie,A., Lee,J., Selvaraj,S., Green,R.E., Putnam,N.H., Gut,I., Ghurye,J., Garrison,E., Sims,Y., Collins,J., Pelan,S., Torrance,J., Tracey,A., Wood,J., Dagnew,R.E., Guan,D., London,S.E., Clayton,D.F., Mello,C.V., Friedrich,S.R., Lovell,P.V., Osipova,E., Al-Ajli,F.O., Secomandi,S., Kim,H., Theofanopoulou,C., Hiller,M., Zhou,Y., Harris,R.S., Makova,K.D., Medvedev,P., Hoffman,J., Masterson,P., Clark,K., Martin,F., Howe,K., Flicek,P., Walenz,B.P., Kwak,W., Clawson,H., Diekhans,M., Nassar,L., Paten,B., Kraus,R.H.S., Crawford,A.J., Gilbert,M.T.P., Zhang,G., Venkatesh,B., Murphy,R.W., Koepfli,K.P., Shapiro,B., Johnson,W.E., Di Palma,F., Marques-Bonet,T., Teeling,E.C., Warnow,T., Graves,J.M., Ryder,O.A., Haussler,D., O'Brien,S.J., Korlach,J., Lewin,H.A., Howe,K., Myers,E.W., Durbin,R., Phillippy,A.M. and Jarvis,E.D. TITLE Towards complete and error-free genome assemblies of all vertebrate species JOURNAL Nature 592 (7856), 737-746 (2021) PUBMED 33911273 REFERENCE 5 (bases 1 to 206) AUTHORS Jarvis,E.D., Rhie,A., Fedrigo,O., Mountcastle,J., Biegler,M., Howe,K., Wood,J., Lewin,H., Damas,J., Balakrishnan,C., Clayton,D., London,S., George,J., Haase,B., Formenti,G., Burt,D., Warren,W., Mello,C.V. and Phillippy,A. TITLE Direct Submission JOURNAL Submitted (14-AUG-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA REFERENCE 6 (bases 1 to 206) AUTHORS Jarvis,E.D., Rhie,A., Mountcastle,J., Biegler,M., Howe,K., Wood,J., Lewin,H., Damas,J., Balakrishnan,C., Clayton,D., London,S., George,J., Haase,B., Formenti,G., Burt,D., Warren,W., Mello,C.V. and Phillippy,A. TITLE Direct Submission JOURNAL Submitted (06-FEB-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT On Feb 10, 2020 this sequence version replaced VOHG00000000.2. The Taeniopygia guttata whole genome shotgun (WGS) project has the project accession VOHG00000000. This version of the project (03) has the accession number VOHG03000000, and consists of sequences VOHG03000001-VOHG03000206. This assembly represents the maternal alternate haplotype of the diploid genome Taeniopygia guttata. The principal haplotype sequences of the VGP 1.5 trio assembly merged haplotype data are in WGS project VOHI00000000. The paternal alternate haploid sequences are in WGS project VOHH00000000. ##Genome-Assembly-Data-START## Assembly Date :: 24-JAN-2020 Assembly Method :: TrioCanu v. 1.7; Scaff10x v. 2.1 git 4.28.2018; Bionano Solve 2 enzyme v. 3.2.1; Salsa v. 2.2; Arrow v. 5.1.0.26412; gEVAL manual curation v. 2019-11-08; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; VGP Trio binning assembly pipeline v. 1.0 Assembly Name :: bTaeGut2.mat.v3 Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 82.5x Sequencing Technology :: PacBio Sequel I; 10X Genomics chromium; Bionano Genomics 2 enzyme; Arima Genomics Hi-C; Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..206 /organism="Taeniopygia guttata" /mol_type="genomic DNA" /isolate="Blue55" /db_xref="taxon:59729" /sex="female" /tissue_type="Muscle, blood, brain" /dev_stage="adult" /country="USA" /lat_lon="36.0014 N 78.9382 W" /collected_by="Matt Biegler, Duke University and Rockefeller University" WGS VOHG03000001-VOHG03000206 WGS_SCAFLD CM018261-CM018288 WGS_SCAFLD CM018802-CM018805 // LOCUS STFT01000000 4677 rc DNA linear VRT 11-AUG-2021 DEFINITION Taeniopygia guttata isolate Blue55, whole genome shotgun sequencing project. ACCESSION STFT00000000 VERSION STFT00000000.1 DBLINK BioProject: PRJNA489187 BioSample: SAMN09946140 KEYWORDS WGS. SOURCE Taeniopygia guttata (zebra finch) ORGANISM Taeniopygia guttata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia. REFERENCE 1 (bases 1 to 4677) AUTHORS Koepfli,K.P., Paten,B. and O'Brien,S.J. CONSRTM Genome 10K Community of Scientists TITLE The Genome 10K Project: a way forward JOURNAL Annu Rev Anim Biosci 3, 57-111 (2015) PUBMED 25689317 REFERENCE 2 (bases 1 to 4677) AUTHORS Zhang,G., Rahbek,C., Graves,G.R., Lei,F., Jarvis,E.D. and Gilbert,M.T. TITLE Genomics: Bird sequencing project takes off JOURNAL Nature 522 (7554), 34 (2015) PUBMED 26040883 REFERENCE 3 (bases 1 to 4677) AUTHORS Rhie,A., McCarthy,S.A., Fedrigo,O., Damas,J., Formenti,G., Koren,S., Uliano-Silva,M., Chow,W., Fungtammasan,A., Kim,J., Lee,C., Ko,B.J., Chaisson,M., Gedman,G.L., Cantin,L.J., Thibaud-Nissen,F., Haggerty,L., Bista,I., Smith,M., Haase,B., Mountcastle,J., Winkler,S., Paez,S., Howard,J., Vernes,S.C., Lama,T.M., Grutzner,F., Warren,W.C., Balakrishnan,C.N., Burt,D., George,J.M., Biegler,M.T., Iorns,D., Digby,A., Eason,D., Robertson,B., Edwards,T., Wilkinson,M., Turner,G., Meyer,A., Kautt,A.F., Franchini,P., Detrich,H.W. III, Svardal,H., Wagner,M., Naylor,G.J.P., Pippel,M., Malinsky,M., Mooney,M., Simbirsky,M., Hannigan,B.T., Pesout,T., Houck,M., Misuraca,A., Kingan,S.B., Hall,R., Kronenberg,Z., Sovic,I., Dunn,C., Ning,Z., Hastie,A., Lee,J., Selvaraj,S., Green,R.E., Putnam,N.H., Gut,I., Ghurye,J., Garrison,E., Sims,Y., Collins,J., Pelan,S., Torrance,J., Tracey,A., Wood,J., Dagnew,R.E., Guan,D., London,S.E., Clayton,D.F., Mello,C.V., Friedrich,S.R., Lovell,P.V., Osipova,E., Al-Ajli,F.O., Secomandi,S., Kim,H., Theofanopoulou,C., Hiller,M., Zhou,Y., Harris,R.S., Makova,K.D., Medvedev,P., Hoffman,J., Masterson,P., Clark,K., Martin,F., Howe,K., Flicek,P., Walenz,B.P., Kwak,W., Clawson,H., Diekhans,M., Nassar,L., Paten,B., Kraus,R.H.S., Crawford,A.J., Gilbert,M.T.P., Zhang,G., Venkatesh,B., Murphy,R.W., Koepfli,K.P., Shapiro,B., Johnson,W.E., Di Palma,F., Marques-Bonet,T., Teeling,E.C., Warnow,T., Graves,J.M., Ryder,O.A., Haussler,D., O'Brien,S.J., Korlach,J., Lewin,H.A., Howe,K., Myers,E.W., Durbin,R., Phillippy,A.M. and Jarvis,E.D. TITLE Towards complete and error-free genome assemblies of all vertebrate species JOURNAL Nature 592 (7856), 737-746 (2021) PUBMED 33911273 REFERENCE 4 (bases 1 to 4677) AUTHORS Jarvis,E.D., Rhie,A., Fedrigo,O., Mountcastle,J., Biegler,M., Howe,K., Wood,J., Lewin,H., Damas,J., Balakrishnan,C., Clayton,D., London,S., George,J., Haase,B., Formenti,G., Burt,D., Warren,W., Mello,C.V. and Phillippy,A. TITLE Direct Submission JOURNAL Submitted (12-APR-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Taeniopygia guttata whole genome shotgun (WGS) project has the project accession STFT00000000. This version of the project (01) has the accession number STFT01000000, and consists of sequences STFT01000001-STFT01004677. This assembly represents the alternate haplotype of the diploid genome Taeniopygia guttata. The principal haplotype sequences are in WGS project STFU00000000. ##Genome-Assembly-Data-START## Assembly Date :: 19-OCT-2018 Assembly Method :: FALCON v. 5.1.1; FALCON unzip v. 1.0.2; smrtanalysis Arrow polishing v. 5.1.026412; purge_haplotigs bit v. 7.10.2018; gEVAL manual curation v. 10.19.2018 Assembly Name :: bTaeGut2.p.v1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 82.5x Sequencing Technology :: PacBio Sequel I ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..4677 /organism="Taeniopygia guttata" /mol_type="genomic DNA" /isolate="Blue55" /db_xref="taxon:59729" /sex="female" /tissue_type="Muscle, blood, brain" /dev_stage="adult" /country="USA" /lat_lon="36.0014 N 78.9382 W" /collected_by="Matt Biegler, Duke University and Rockefeller University" WGS STFT01000001-STFT01004677 // LOCUS RXXE02000000 90 rc DNA linear VRT 11-AUG-2021 DEFINITION Strigops habroptila isolate Jane, whole genome shotgun sequencing project. ACCESSION RXXE00000000 VERSION RXXE00000000.2 DBLINK BioProject: PRJNA489135 BioSample: SAMN09948751 KEYWORDS WGS. SOURCE Strigops habroptila (Kakapo) ORGANISM Strigops habroptila Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Psittaciformes; Psittacidae; Strigops. REFERENCE 1 (bases 1 to 90) AUTHORS Rhie,A., McCarthy,S.A., Fedrigo,O., Damas,J., Formenti,G., Koren,S., Uliano-Silva,M., Chow,W., Fungtammasan,A., Kim,J., Lee,C., Ko,B.J., Chaisson,M., Gedman,G.L., Cantin,L.J., Thibaud-Nissen,F., Haggerty,L., Bista,I., Smith,M., Haase,B., Mountcastle,J., Winkler,S., Paez,S., Howard,J., Vernes,S.C., Lama,T.M., Grutzner,F., Warren,W.C., Balakrishnan,C.N., Burt,D., George,J.M., Biegler,M.T., Iorns,D., Digby,A., Eason,D., Robertson,B., Edwards,T., Wilkinson,M., Turner,G., Meyer,A., Kautt,A.F., Franchini,P., Detrich,H.W. III, Svardal,H., Wagner,M., Naylor,G.J.P., Pippel,M., Malinsky,M., Mooney,M., Simbirsky,M., Hannigan,B.T., Pesout,T., Houck,M., Misuraca,A., Kingan,S.B., Hall,R., Kronenberg,Z., Sovic,I., Dunn,C., Ning,Z., Hastie,A., Lee,J., Selvaraj,S., Green,R.E., Putnam,N.H., Gut,I., Ghurye,J., Garrison,E., Sims,Y., Collins,J., Pelan,S., Torrance,J., Tracey,A., Wood,J., Dagnew,R.E., Guan,D., London,S.E., Clayton,D.F., Mello,C.V., Friedrich,S.R., Lovell,P.V., Osipova,E., Al-Ajli,F.O., Secomandi,S., Kim,H., Theofanopoulou,C., Hiller,M., Zhou,Y., Harris,R.S., Makova,K.D., Medvedev,P., Hoffman,J., Masterson,P., Clark,K., Martin,F., Howe,K., Flicek,P., Walenz,B.P., Kwak,W., Clawson,H., Diekhans,M., Nassar,L., Paten,B., Kraus,R.H.S., Crawford,A.J., Gilbert,M.T.P., Zhang,G., Venkatesh,B., Murphy,R.W., Koepfli,K.P., Shapiro,B., Johnson,W.E., Di Palma,F., Marques-Bonet,T., Teeling,E.C., Warnow,T., Graves,J.M., Ryder,O.A., Haussler,D., O'Brien,S.J., Korlach,J., Lewin,H.A., Howe,K., Myers,E.W., Durbin,R., Phillippy,A.M. and Jarvis,E.D. TITLE Towards complete and error-free genome assemblies of all vertebrate species JOURNAL Nature 592 (7856), 737-746 (2021) PUBMED 33911273 REFERENCE 2 (bases 1 to 90) AUTHORS Jarvis,E.D., Howard,J., Rhie,A., Phillippy,A., Korlach,J., Digby,A., Iorns,D., Eason,D., Robertson,B., Raemaekers,T., Howe,K., Lewin,H., Damas,J., Hastie,A. and Fedrigo,O. TITLE Direct Submission JOURNAL Submitted (17-DEC-2018) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA REFERENCE 3 (bases 1 to 90) AUTHORS Jarvis,E.D., Howard,J., Rhie,A., Phillippy,A., Korlach,J., Digby,A., Iorns,D., Eason,D., Robertson,B., Raemaekers,T., Howe,K., Lewin,H., Damas,J., Hastie,A., Tracey,A., Chow,W. and Fedrigo,O. TITLE Direct Submission JOURNAL Submitted (24-NOV-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT On Dec 27, 2019 this sequence version replaced RXXE00000000.1. The Strigops habroptila whole genome shotgun (WGS) project has the project accession RXXE00000000. This version of the project (02) has the accession number RXXE02000000, and consists of sequences RXXE02000001-RXXE02000090. The chromosome names were updated in August 2019 when the sex chromosomes were identified. Former chromosome 3 is chromosome Z, former chromosome 13 is chromosome W, and the remaining former chromosomes 3-26 were renamed sequentially to chromosomes 4-24 (4-12 are now 3-11, and 14-26 are now 12-24, respectively). This is an updated assembly of GCA_004027225.1. New Hi-C mapping tools (HiGlass) and experience of the VGP with bird genomes were used to re-curate the assembly (using gEVAL), where nearly all previously unlocalized scaffolds are now assembled into their respective chromosomes This assembly represents the principal haplotype of the diploid genome Strigops habroptila and includes the chromosomes. The alternate haplotype sequences are in WGS project RXXF00000000. ##Genome-Assembly-Data-START## Assembly Date :: 08-NOV-2019 Assembly Method :: FALCON v. 5.1.1; FALCON unzip v. 1.0.2; scaff10X v. git 4.28.2018; Bionano Solve DLS v. 3.2.1; Salsa2 HiC v. 2.0; smrtanalysis Arrow polishing & gap filling v. 5.1.0.26412; longranger align v. 2.2.2; freebayes v. 1.2.0; purge_haplotigs v. bit 7.10.2018; gEVAL manual curation v. 2019-11-08 Assembly Name :: bStrHab1.2.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 76.1x Sequencing Technology :: PacBio RSII; 10X Genomics linked reads; Bionano Genomics DLS; Arima Genomics HiC ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..90 /organism="Strigops habroptila" /mol_type="genomic DNA" /isolate="Jane" /db_xref="taxon:2489341" /sex="female" /tissue_type="blood in lysis buffer or EtOH" /country="New Zealand: Anchor Island" /lat_lon="45.757406 S 166.504927 E" /collection_date="2013-04-13" /collected_by="Tim Raemaekers, Daryl Eason, Andrew Digby of Department of Conservation, New Zealand" WGS RXXE02000001-RXXE02000090 WGS_SCAFLD CM013761-CM013785 WGS_SCAFLD CM013787 // LOCUS VOHH01000000 202 rc DNA linear VRT 11-AUG-2021 DEFINITION Taeniopygia guttata isolate Blue55, whole genome shotgun sequencing project. ACCESSION VOHH00000000 VERSION VOHH00000000.1 DBLINK BioProject: PRJNA489101 BioSample: SAMN09946140 KEYWORDS WGS. SOURCE Taeniopygia guttata (zebra finch) ORGANISM Taeniopygia guttata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia. REFERENCE 1 (bases 1 to 202) AUTHORS Koepfli,K.P., Paten,B. and O'Brien,S.J. CONSRTM Genome 10K Community of Scientists TITLE The Genome 10K Project: a way forward JOURNAL Annu Rev Anim Biosci 3, 57-111 (2015) PUBMED 25689317 REFERENCE 2 (bases 1 to 202) AUTHORS Zhang,G., Rahbek,C., Graves,G.R., Lei,F., Jarvis,E.D. and Gilbert,M.T. TITLE Genomics: Bird sequencing project takes off JOURNAL Nature 522 (7554), 34 (2015) PUBMED 26040883 REFERENCE 3 (bases 1 to 202) AUTHORS Rhie,A., McCarthy,S.A., Fedrigo,O., Damas,J., Formenti,G., Koren,S., Uliano-Silva,M., Chow,W., Fungtammasan,A., Kim,J., Lee,C., Ko,B.J., Chaisson,M., Gedman,G.L., Cantin,L.J., Thibaud-Nissen,F., Haggerty,L., Bista,I., Smith,M., Haase,B., Mountcastle,J., Winkler,S., Paez,S., Howard,J., Vernes,S.C., Lama,T.M., Grutzner,F., Warren,W.C., Balakrishnan,C.N., Burt,D., George,J.M., Biegler,M.T., Iorns,D., Digby,A., Eason,D., Robertson,B., Edwards,T., Wilkinson,M., Turner,G., Meyer,A., Kautt,A.F., Franchini,P., Detrich,H.W. III, Svardal,H., Wagner,M., Naylor,G.J.P., Pippel,M., Malinsky,M., Mooney,M., Simbirsky,M., Hannigan,B.T., Pesout,T., Houck,M., Misuraca,A., Kingan,S.B., Hall,R., Kronenberg,Z., Sovic,I., Dunn,C., Ning,Z., Hastie,A., Lee,J., Selvaraj,S., Green,R.E., Putnam,N.H., Gut,I., Ghurye,J., Garrison,E., Sims,Y., Collins,J., Pelan,S., Torrance,J., Tracey,A., Wood,J., Dagnew,R.E., Guan,D., London,S.E., Clayton,D.F., Mello,C.V., Friedrich,S.R., Lovell,P.V., Osipova,E., Al-Ajli,F.O., Secomandi,S., Kim,H., Theofanopoulou,C., Hiller,M., Zhou,Y., Harris,R.S., Makova,K.D., Medvedev,P., Hoffman,J., Masterson,P., Clark,K., Martin,F., Howe,K., Flicek,P., Walenz,B.P., Kwak,W., Clawson,H., Diekhans,M., Nassar,L., Paten,B., Kraus,R.H.S., Crawford,A.J., Gilbert,M.T.P., Zhang,G., Venkatesh,B., Murphy,R.W., Koepfli,K.P., Shapiro,B., Johnson,W.E., Di Palma,F., Marques-Bonet,T., Teeling,E.C., Warnow,T., Graves,J.M., Ryder,O.A., Haussler,D., O'Brien,S.J., Korlach,J., Lewin,H.A., Howe,K., Myers,E.W., Durbin,R., Phillippy,A.M. and Jarvis,E.D. TITLE Towards complete and error-free genome assemblies of all vertebrate species JOURNAL Nature 592 (7856), 737-746 (2021) PUBMED 33911273 REFERENCE 4 (bases 1 to 202) AUTHORS Jarvis,E.D., Rhie,A., Mountcastle,J., Biegler,M., Howe,K., Wood,J., Lewin,H., Damas,J., Balakrishnan,C., Clayton,D., London,S., George,J., Haase,B., Formenti,G., Burt,D., Warren,W., Mello,C.V. and Phillippy,A. TITLE Direct Submission JOURNAL Submitted (10-SEP-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Taeniopygia guttata whole genome shotgun (WGS) project has the project accession VOHH00000000. This version of the project (01) has the accession number VOHH01000000, and consists of sequences VOHH01000001-VOHH01000202. This assembly represents the paternal alternate haplotype of the diploid genome Taeniopygia guttata. The principal haplotype sequences of the VGP 1.5 trio assembly merged haplotype data are in WGS project VOHI00000000. The maternal alternate haploid sequences are in WGS project VOHG00000000. The bTaeGut2p assembly is based on the VGP 1.5 trio binning pipeline. Initial PacBio read binning into maternal and paternal haplotypes using parental Illumina short reads. Then each haplotype is assembled into contigs with Canu, followed by 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding with Bionano Solve, Hi-C based scaffolding with SALSA2, Arrow polishing and gap filling, and two rounds of FreeBayes polishing with Illumina short reads. This assembly was curated with chromosomes annotated using gEVAL before the FreeBayes polishing. ##Genome-Assembly-Data-START## Assembly Date :: 21-AUG-2019 Assembly Method :: Trio Binning v. 1; Canu v. 1.7; Scaff10x v. 2.1(git 4.28.2018); Bionano Solve 2 enzyme v. 3.2.1; Salsa2 v. 2.2; Arrow v. 5.1.0.26412; gEVAL manual curation v. 2019-05-24; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.2.0; VGP Trio binning assembly pipeline v. 1.5 Assembly Name :: bTaeGut2pat Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 82.5x Sequencing Technology :: PacBio Sequel; 10X genome; Bionano Genomics; Arima Genomics Hi-C; Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..202 /organism="Taeniopygia guttata" /mol_type="genomic DNA" /isolate="Blue55" /db_xref="taxon:59729" /sex="female" /tissue_type="Muscle, blood, brain" /dev_stage="adult" /country="USA" /lat_lon="36.0014 N 78.9382 W" /collected_by="Matt Biegler, Duke University and Rockefeller University" WGS VOHH01000001-VOHH01000202 WGS_SCAFLD CM018289-CM018318 // LOCUS VHHO01000000 8736 rc DNA linear VRT 11-AUG-2021 DEFINITION Gopherus evgoodei, whole genome shotgun sequencing project. ACCESSION VHHO00000000 VERSION VHHO00000000.1 DBLINK BioProject: PRJNA489104 BioSample: SAMN03496275 KEYWORDS WGS. SOURCE Gopherus evgoodei (Goodes thornscrub tortoise) ORGANISM Gopherus evgoodei Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Testudinidae; Gopherus. REFERENCE 1 (bases 1 to 8736) AUTHORS Koepfli,K.P., Paten,B. and O'Brien,S.J. CONSRTM Genome 10K Community of Scientists TITLE The Genome 10K Project: a way forward JOURNAL Annu Rev Anim Biosci 3, 57-111 (2015) PUBMED 25689317 REFERENCE 2 (bases 1 to 8736) AUTHORS Rhie,A., McCarthy,S.A., Fedrigo,O., Damas,J., Formenti,G., Koren,S., Uliano-Silva,M., Chow,W., Fungtammasan,A., Kim,J., Lee,C., Ko,B.J., Chaisson,M., Gedman,G.L., Cantin,L.J., Thibaud-Nissen,F., Haggerty,L., Bista,I., Smith,M., Haase,B., Mountcastle,J., Winkler,S., Paez,S., Howard,J., Vernes,S.C., Lama,T.M., Grutzner,F., Warren,W.C., Balakrishnan,C.N., Burt,D., George,J.M., Biegler,M.T., Iorns,D., Digby,A., Eason,D., Robertson,B., Edwards,T., Wilkinson,M., Turner,G., Meyer,A., Kautt,A.F., Franchini,P., Detrich,H.W. III, Svardal,H., Wagner,M., Naylor,G.J.P., Pippel,M., Malinsky,M., Mooney,M., Simbirsky,M., Hannigan,B.T., Pesout,T., Houck,M., Misuraca,A., Kingan,S.B., Hall,R., Kronenberg,Z., Sovic,I., Dunn,C., Ning,Z., Hastie,A., Lee,J., Selvaraj,S., Green,R.E., Putnam,N.H., Gut,I., Ghurye,J., Garrison,E., Sims,Y., Collins,J., Pelan,S., Torrance,J., Tracey,A., Wood,J., Dagnew,R.E., Guan,D., London,S.E., Clayton,D.F., Mello,C.V., Friedrich,S.R., Lovell,P.V., Osipova,E., Al-Ajli,F.O., Secomandi,S., Kim,H., Theofanopoulou,C., Hiller,M., Zhou,Y., Harris,R.S., Makova,K.D., Medvedev,P., Hoffman,J., Masterson,P., Clark,K., Martin,F., Howe,K., Flicek,P., Walenz,B.P., Kwak,W., Clawson,H., Diekhans,M., Nassar,L., Paten,B., Kraus,R.H.S., Crawford,A.J., Gilbert,M.T.P., Zhang,G., Venkatesh,B., Murphy,R.W., Koepfli,K.P., Shapiro,B., Johnson,W.E., Di Palma,F., Marques-Bonet,T., Teeling,E.C., Warnow,T., Graves,J.M., Ryder,O.A., Haussler,D., O'Brien,S.J., Korlach,J., Lewin,H.A., Howe,K., Myers,E.W., Durbin,R., Phillippy,A.M. and Jarvis,E.D. TITLE Towards complete and error-free genome assemblies of all vertebrate species JOURNAL Nature 592 (7856), 737-746 (2021) PUBMED 33911273 REFERENCE 3 (bases 1 to 8736) AUTHORS Formenti,G., Rhie,A., Balacco,J., Haase,B., Mountcastle,J., Fedrigo,O., Brown,S., Capodiferro,M.R., Al-Ajli,F.O., Ambrosini,R., Houde,P., Koren,S., Oliver,K., Smith,M., Skelton,J., Betteridge,E., Dolucan,J., Corton,C., Bista,I., Torrance,J., Tracey,A., Wood,J., Uliano-Silva,M., Howe,K., McCarthy,S., Winkler,S., Kwak,W., Korlach,J., Fungtammasan,A., Fordham,D., Costa,V., Mayes,S., Chiara,M., Horner,D.S., Myers,E., Durbin,R., Achilli,A., Braun,E.L., Phillippy,A.M. and Jarvis,E.D. CONSRTM Vertebrate Genomes Project Consortium TITLE Complete vertebrate mitogenomes reveal widespread repeats and gene duplications JOURNAL Genome Biol 22 (1), 120 (2021) PUBMED 33910595 REMARK Publication Status: Online-Only REFERENCE 4 (bases 1 to 8736) AUTHORS Murphy,B., Edwards,T., Rhie,A., Koren,S., Phillippy,A., Fedrigo,O., Haase,B., Mountcastle,J., Lewin,H., Damas,J., Howe,K., Formenti,G., Myers,G., Durbin,R. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (13-MAY-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Gopherus evgoodei whole genome shotgun (WGS) project has the project accession VHHO00000000. This version of the project (01) has the accession number VHHO01000000, and consists of sequences VHHO01000001-VHHO01008736. This assembly represents the alternate haplotype of the diploid genome Gopherus evgoodei. The principal haplotype sequences are in WGS project VHHN00000000. ##Genome-Assembly-Data-START## Assembly Date :: 31-JAN-2019 Assembly Method :: FALCON v. 5.1.1; FALCON-Unzip v. 1.0.2; purge_haplotigs v. bitbucket 7.10.2018; scaff10x v. 2.1; Bionano Solve DLS v. 3.2.1; Salsa2 v. 2.2; Arrow v. 5.1.0.26412; longranger align v. 2.2.2; freebayes v. 1.2.0; gEVAL manual curation v. 2019-01-31; VGP standard assembly pipeline v. 1.5 Assembly Name :: rGopEvg1_v1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 58.0x Sequencing Technology :: PacBio Sequel I; 10X Genomics linked reads; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..8736 /organism="Gopherus evgoodei" /mol_type="genomic DNA" /db_xref="taxon:1825980" /sex="male" /tissue_type="whole blood" /ecotype="Sinaloan lineage" /country="Mexico: Sonora" /collection_date="2010-08-10" /collected_by="T. Edwards" WGS VHHO01000001-VHHO01008736 // LOCUS VHHN01000000 383 rc DNA linear VRT 11-AUG-2021 DEFINITION Gopherus evgoodei, whole genome shotgun sequencing project. ACCESSION VHHN00000000 VERSION VHHN00000000.1 DBLINK BioProject: PRJNA489103 BioSample: SAMN03496275 KEYWORDS WGS. SOURCE Gopherus evgoodei (Goodes thornscrub tortoise) ORGANISM Gopherus evgoodei Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Testudinidae; Gopherus. REFERENCE 1 (bases 1 to 383) AUTHORS Rhie,A., McCarthy,S.A., Fedrigo,O., Damas,J., Formenti,G., Koren,S., Uliano-Silva,M., Chow,W., Fungtammasan,A., Kim,J., Lee,C., Ko,B.J., Chaisson,M., Gedman,G.L., Cantin,L.J., Thibaud-Nissen,F., Haggerty,L., Bista,I., Smith,M., Haase,B., Mountcastle,J., Winkler,S., Paez,S., Howard,J., Vernes,S.C., Lama,T.M., Grutzner,F., Warren,W.C., Balakrishnan,C.N., Burt,D., George,J.M., Biegler,M.T., Iorns,D., Digby,A., Eason,D., Robertson,B., Edwards,T., Wilkinson,M., Turner,G., Meyer,A., Kautt,A.F., Franchini,P., Detrich,H.W. III, Svardal,H., Wagner,M., Naylor,G.J.P., Pippel,M., Malinsky,M., Mooney,M., Simbirsky,M., Hannigan,B.T., Pesout,T., Houck,M., Misuraca,A., Kingan,S.B., Hall,R., Kronenberg,Z., Sovic,I., Dunn,C., Ning,Z., Hastie,A., Lee,J., Selvaraj,S., Green,R.E., Putnam,N.H., Gut,I., Ghurye,J., Garrison,E., Sims,Y., Collins,J., Pelan,S., Torrance,J., Tracey,A., Wood,J., Dagnew,R.E., Guan,D., London,S.E., Clayton,D.F., Mello,C.V., Friedrich,S.R., Lovell,P.V., Osipova,E., Al-Ajli,F.O., Secomandi,S., Kim,H., Theofanopoulou,C., Hiller,M., Zhou,Y., Harris,R.S., Makova,K.D., Medvedev,P., Hoffman,J., Masterson,P., Clark,K., Martin,F., Howe,K., Flicek,P., Walenz,B.P., Kwak,W., Clawson,H., Diekhans,M., Nassar,L., Paten,B., Kraus,R.H.S., Crawford,A.J., Gilbert,M.T.P., Zhang,G., Venkatesh,B., Murphy,R.W., Koepfli,K.P., Shapiro,B., Johnson,W.E., Di Palma,F., Marques-Bonet,T., Teeling,E.C., Warnow,T., Graves,J.M., Ryder,O.A., Haussler,D., O'Brien,S.J., Korlach,J., Lewin,H.A., Howe,K., Myers,E.W., Durbin,R., Phillippy,A.M. and Jarvis,E.D. TITLE Towards complete and error-free genome assemblies of all vertebrate species JOURNAL Nature 592 (7856), 737-746 (2021) PUBMED 33911273 REFERENCE 2 (bases 1 to 383) AUTHORS Murphy,B., Edwards,T., Rhie,A., Koren,S., Phillippy,A., Fedrigo,O., Haase,B., Mountcastle,J., Lewin,H., Damas,J., Howe,K., Formenti,G., Myers,G., Durbin,R. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (19-JUN-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Gopherus evgoodei whole genome shotgun (WGS) project has the project accession VHHN00000000. This version of the project (01) has the accession number VHHN01000000, and consists of sequences VHHN01000001-VHHN01000383. This assembly represents the principal haplotype of the diploid genome Gopherus evgoodei and includes the chromosomes. The alternate haplotype sequences are in WGS project VHHO00000000. ##Genome-Assembly-Data-START## Assembly Date :: 31-JAN-2019 Assembly Method :: FALCON v. 5.1.1; FALCON-Unzip v. 1.0.2; purge_haplotigs v. bitbucket 7.10.2018; scaff10x v. 2.1; Bionano Solve DLS v. 3.2.1; Salsa2 v. 2.2; Arrow v. 5.1.0.26412; longranger align v. 2.2.2; freebayes v. 1.2.0; gEVAL manual curation v. 2019-01-31; VGP standard assembly pipeline v. 1.5 Assembly Name :: rGopEvg1_v1.p Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 58.0x Sequencing Technology :: PacBio Sequel I; 10X Genomics linked reads; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..383 /organism="Gopherus evgoodei" /mol_type="genomic DNA" /db_xref="taxon:1825980" /sex="male" /tissue_type="whole blood" /ecotype="Sinaloan lineage" /country="Mexico: Sonora" /collection_date="2010-08-10" /collected_by="T. Edwards" WGS VHHN01000001-VHHN01000383 WGS_SCAFLD CM017296-CM017320 // LOCUS STFW01000000 9292 rc DNA linear VRT 11-AUG-2021 DEFINITION Archocentrus centrarchus isolate MPI-CPG fArcCen1, whole genome shotgun sequencing project. ACCESSION STFW00000000 VERSION STFW00000000.1 DBLINK BioProject: PRJNA489130 BioSample: SAMN09948522 KEYWORDS WGS. SOURCE Archocentrus centrarchus (flier cichlid) ORGANISM Archocentrus centrarchus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; New World cichlids; Cichlasomatinae; Heroini; Archocentrus. REFERENCE 1 (bases 1 to 9292) AUTHORS Koepfli,K.P., Paten,B. and O'Brien,S.J. CONSRTM Genome 10K Community of Scientists TITLE The Genome 10K Project: a way forward JOURNAL Annu Rev Anim Biosci 3, 57-111 (2015) PUBMED 25689317 REFERENCE 2 (bases 1 to 9292) AUTHORS Jebb,D., Huang,Z., Pippel,M., Hughes,G.M., Lavrichenko,K., Devanna,P., Winkler,S., Jermiin,L.S., Skirmuntt,E.C., Katzourakis,A., Burkitt-Gray,L., Ray,D.A., Sullivan,K.A.M., Roscito,J.G., Kirilenko,B.M., Davalos,L.M., Corthals,A.P., Power,M.L., Jones,G., Ransome,R.D., Dechmann,D.K.N., Locatelli,A.G., Puechmaille,S.J., Fedrigo,O., Jarvis,E.D., Hiller,M., Vernes,S.C., Myers,E.W. and Teeling,E.C. TITLE Six reference-quality genomes reveal evolution of bat adaptations JOURNAL Nature 583 (7817), 578-584 (2020) PUBMED 32699395 REFERENCE 3 (bases 1 to 9292) AUTHORS Rhie,A., McCarthy,S.A., Fedrigo,O., Damas,J., Formenti,G., Koren,S., Uliano-Silva,M., Chow,W., Fungtammasan,A., Kim,J., Lee,C., Ko,B.J., Chaisson,M., Gedman,G.L., Cantin,L.J., Thibaud-Nissen,F., Haggerty,L., Bista,I., Smith,M., Haase,B., Mountcastle,J., Winkler,S., Paez,S., Howard,J., Vernes,S.C., Lama,T.M., Grutzner,F., Warren,W.C., Balakrishnan,C.N., Burt,D., George,J.M., Biegler,M.T., Iorns,D., Digby,A., Eason,D., Robertson,B., Edwards,T., Wilkinson,M., Turner,G., Meyer,A., Kautt,A.F., Franchini,P., Detrich,H.W. III, Svardal,H., Wagner,M., Naylor,G.J.P., Pippel,M., Malinsky,M., Mooney,M., Simbirsky,M., Hannigan,B.T., Pesout,T., Houck,M., Misuraca,A., Kingan,S.B., Hall,R., Kronenberg,Z., Sovic,I., Dunn,C., Ning,Z., Hastie,A., Lee,J., Selvaraj,S., Green,R.E., Putnam,N.H., Gut,I., Ghurye,J., Garrison,E., Sims,Y., Collins,J., Pelan,S., Torrance,J., Tracey,A., Wood,J., Dagnew,R.E., Guan,D., London,S.E., Clayton,D.F., Mello,C.V., Friedrich,S.R., Lovell,P.V., Osipova,E., Al-Ajli,F.O., Secomandi,S., Kim,H., Theofanopoulou,C., Hiller,M., Zhou,Y., Harris,R.S., Makova,K.D., Medvedev,P., Hoffman,J., Masterson,P., Clark,K., Martin,F., Howe,K., Flicek,P., Walenz,B.P., Kwak,W., Clawson,H., Diekhans,M., Nassar,L., Paten,B., Kraus,R.H.S., Crawford,A.J., Gilbert,M.T.P., Zhang,G., Venkatesh,B., Murphy,R.W., Koepfli,K.P., Shapiro,B., Johnson,W.E., Di Palma,F., Marques-Bonet,T., Teeling,E.C., Warnow,T., Graves,J.M., Ryder,O.A., Haussler,D., O'Brien,S.J., Korlach,J., Lewin,H.A., Howe,K., Myers,E.W., Durbin,R., Phillippy,A.M. and Jarvis,E.D. TITLE Towards complete and error-free genome assemblies of all vertebrate species JOURNAL Nature 592 (7856), 737-746 (2021) PUBMED 33911273 REFERENCE 4 (bases 1 to 9292) AUTHORS Formenti,G., Rhie,A., Balacco,J., Haase,B., Mountcastle,J., Fedrigo,O., Brown,S., Capodiferro,M.R., Al-Ajli,F.O., Ambrosini,R., Houde,P., Koren,S., Oliver,K., Smith,M., Skelton,J., Betteridge,E., Dolucan,J., Corton,C., Bista,I., Torrance,J., Tracey,A., Wood,J., Uliano-Silva,M., Howe,K., McCarthy,S., Winkler,S., Kwak,W., Korlach,J., Fungtammasan,A., Fordham,D., Costa,V., Mayes,S., Chiara,M., Horner,D.S., Myers,E., Durbin,R., Achilli,A., Braun,E.L., Phillippy,A.M. and Jarvis,E.D. CONSRTM Vertebrate Genomes Project Consortium TITLE Complete vertebrate mitogenomes reveal widespread repeats and gene duplications JOURNAL Genome Biol 22 (1), 120 (2021) PUBMED 33910595 REMARK Publication Status: Online-Only REFERENCE 5 (bases 1 to 9292) AUTHORS Myers,G., Meyer,A., Pippel,M., Winkler,S., Formenti,G., Fedrigo,O., Rhie,A., Koren,S., Phillippy,A., Lewin,H., Damas,J., Howe,K., Mountcastle,J., Mccarthy,S., Durbin,R. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (12-APR-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Archocentrus centrarchus whole genome shotgun (WGS) project has the project accession STFW00000000. This version of the project (01) has the accession number STFW01000000, and consists of sequences STFW01000001-STFW01009292. This assembly represents the alternate haplotype of the diploid genome Archocentrus centrarchus. The principal haplotype sequences are in WGS project STFV00000000. ##Genome-Assembly-Data-START## Assembly Date :: 08-FEB-2019 Assembly Method :: FALCON v. 5.1.1; FALCON-Unzip v. 1.0.2; scaff10x v. 2.1; Bionano Solve DLS v. 3.2.1; Salsa2 v. 2.0; Arrow v. 5.1.0.26412; longranger align v. 2.2.2; freebayes v. 1.2.0; gEVAL manual curation v. 2019-02-08; VGP standard assembly pipeline v. 1.0 Assembly Name :: fArcCen1_v1.h Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 76.0x Sequencing Technology :: PacBio Sequel I; 10X Genomics linked reads; Bionano Genomics DLS; Arima Genomics Hi-C ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..9292 /organism="Archocentrus centrarchus" /mol_type="genomic DNA" /isolate="MPI-CPG fArcCen1" /db_xref="taxon:63155" /sex="male" /tissue_type="muscle" /country="Nicaragua" /lat_lon="12.8654 N 85.2072 W" /collection_date="2016-03-09" /collected_by="Axel Meyer, Andreas Kautt, Paolo Franchini" WGS STFW01000001-STFW01009292 // LOCUS STFV01000000 189 rc DNA linear VRT 11-AUG-2021 DEFINITION Archocentrus centrarchus isolate MPI-CPG fArcCen1, whole genome shotgun sequencing project. ACCESSION STFV00000000 VERSION STFV00000000.1 DBLINK BioProject: PRJNA489129 BioSample: SAMN09948522 KEYWORDS WGS. SOURCE Archocentrus centrarchus (flier cichlid) ORGANISM Archocentrus centrarchus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; New World cichlids; Cichlasomatinae; Heroini; Archocentrus. REFERENCE 1 (bases 1 to 189) AUTHORS Rhie,A., McCarthy,S.A., Fedrigo,O., Damas,J., Formenti,G., Koren,S., Uliano-Silva,M., Chow,W., Fungtammasan,A., Kim,J., Lee,C., Ko,B.J., Chaisson,M., Gedman,G.L., Cantin,L.J., Thibaud-Nissen,F., Haggerty,L., Bista,I., Smith,M., Haase,B., Mountcastle,J., Winkler,S., Paez,S., Howard,J., Vernes,S.C., Lama,T.M., Grutzner,F., Warren,W.C., Balakrishnan,C.N., Burt,D., George,J.M., Biegler,M.T., Iorns,D., Digby,A., Eason,D., Robertson,B., Edwards,T., Wilkinson,M., Turner,G., Meyer,A., Kautt,A.F., Franchini,P., Detrich,H.W. III, Svardal,H., Wagner,M., Naylor,G.J.P., Pippel,M., Malinsky,M., Mooney,M., Simbirsky,M., Hannigan,B.T., Pesout,T., Houck,M., Misuraca,A., Kingan,S.B., Hall,R., Kronenberg,Z., Sovic,I., Dunn,C., Ning,Z., Hastie,A., Lee,J., Selvaraj,S., Green,R.E., Putnam,N.H., Gut,I., Ghurye,J., Garrison,E., Sims,Y., Collins,J., Pelan,S., Torrance,J., Tracey,A., Wood,J., Dagnew,R.E., Guan,D., London,S.E., Clayton,D.F., Mello,C.V., Friedrich,S.R., Lovell,P.V., Osipova,E., Al-Ajli,F.O., Secomandi,S., Kim,H., Theofanopoulou,C., Hiller,M., Zhou,Y., Harris,R.S., Makova,K.D., Medvedev,P., Hoffman,J., Masterson,P., Clark,K., Martin,F., Howe,K., Flicek,P., Walenz,B.P., Kwak,W., Clawson,H., Diekhans,M., Nassar,L., Paten,B., Kraus,R.H.S., Crawford,A.J., Gilbert,M.T.P., Zhang,G., Venkatesh,B., Murphy,R.W., Koepfli,K.P., Shapiro,B., Johnson,W.E., Di Palma,F., Marques-Bonet,T., Teeling,E.C., Warnow,T., Graves,J.M., Ryder,O.A., Haussler,D., O'Brien,S.J., Korlach,J., Lewin,H.A., Howe,K., Myers,E.W., Durbin,R., Phillippy,A.M. and Jarvis,E.D. TITLE Towards complete and error-free genome assemblies of all vertebrate species JOURNAL Nature 592 (7856), 737-746 (2021) PUBMED 33911273 REFERENCE 2 (bases 1 to 189) AUTHORS Formenti,G., Rhie,A., Balacco,J., Haase,B., Mountcastle,J., Fedrigo,O., Brown,S., Capodiferro,M.R., Al-Ajli,F.O., Ambrosini,R., Houde,P., Koren,S., Oliver,K., Smith,M., Skelton,J., Betteridge,E., Dolucan,J., Corton,C., Bista,I., Torrance,J., Tracey,A., Wood,J., Uliano-Silva,M., Howe,K., McCarthy,S., Winkler,S., Kwak,W., Korlach,J., Fungtammasan,A., Fordham,D., Costa,V., Mayes,S., Chiara,M., Horner,D.S., Myers,E., Durbin,R., Achilli,A., Braun,E.L., Phillippy,A.M. and Jarvis,E.D. CONSRTM Vertebrate Genomes Project Consortium TITLE Complete vertebrate mitogenomes reveal widespread repeats and gene duplications JOURNAL Genome Biol 22 (1), 120 (2021) PUBMED 33910595 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 189) AUTHORS Myers,G., Meyer,A., Pippel,M., Winkler,S., Formenti,G., Fedrigo,O., Rhie,A., Koren,S., Phillippy,A., Lewin,H., Damas,J., Howe,K., Mountcastle,J., Mccarthy,S., Durbin,R. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (12-APR-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Archocentrus centrarchus whole genome shotgun (WGS) project has the project accession STFV00000000. This version of the project (01) has the accession number STFV01000000, and consists of sequences STFV01000001-STFV01000189. This assembly represents the principal haplotype of the diploid genome Archocentrus centrarchus and includes the chromosomes. The alternate haplotype sequences are in WGS project STFW00000000. ##Genome-Assembly-Data-START## Assembly Date :: 08-FEB-2019 Assembly Method :: FALCON v. 5.1.1; FALCON-Unzip v. 1.0.2; scaff10x v. 2.1; Bionano Solve DLS v. 3.2.1; Salsa2 v. 2.0; Arrow v. 5.1.0.26412; longranger align v. 2.2.2; freebayes v. 1.2.0; gEVAL manual curation v. 2019-02-08; VGP standard assembly pipeline v. 1.0 Assembly Name :: fArcCen1 Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 76.0x Sequencing Technology :: PacBio Sequel I; 10X Genomics linked reads; Bionano Genomics DLS; Arima Genomics Hi-C ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..189 /organism="Archocentrus centrarchus" /mol_type="genomic DNA" /isolate="MPI-CPG fArcCen1" /db_xref="taxon:63155" /sex="male" /tissue_type="muscle" /country="Nicaragua" /lat_lon="12.8654 N 85.2072 W" /collection_date="2016-03-09" /collected_by="Axel Meyer, Andreas Kautt, Paolo Franchini" WGS STFV01000001-STFV01000189 WGS_SCAFLD CM017272-CM017295 WGS_SCAFLD CM017446 // LOCUS RXPC01000000 135 rc DNA linear MAM 11-AUG-2021 DEFINITION Rhinolophus ferrumequinum isolate MPI-CBG mRhiFer1, whole genome shotgun sequencing project. ACCESSION RXPC00000000 VERSION RXPC00000000.1 DBLINK BioProject: PRJNA489106 BioSample: SAMN09948510 KEYWORDS WGS. SOURCE Rhinolophus ferrumequinum (greater horseshoe bat) ORGANISM Rhinolophus ferrumequinum Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Rhinolophidae; Rhinolophinae; Rhinolophus. REFERENCE 1 (bases 1 to 135) AUTHORS Jebb,D., Huang,Z., Pippel,M., Hughes,G.M., Lavrichenko,K., Devanna,P., Winkler,S., Jermiin,L.S., Skirmuntt,E.C., Katzourakis,A., Burkitt-Gray,L., Ray,D.A., Sullivan,K.A.M., Roscito,J.G., Kirilenko,B.M., Davalos,L.M., Corthals,A.P., Power,M.L., Jones,G., Ransome,R.D., Dechmann,D.K.N., Locatelli,A.G., Puechmaille,S.J., Fedrigo,O., Jarvis,E.D., Hiller,M., Vernes,S.C., Myers,E.W. and Teeling,E.C. TITLE Six reference-quality genomes reveal evolution of bat adaptations JOURNAL Nature 583 (7817), 578-584 (2020) PUBMED 32699395 REFERENCE 2 (bases 1 to 135) AUTHORS Rhie,A., McCarthy,S.A., Fedrigo,O., Damas,J., Formenti,G., Koren,S., Uliano-Silva,M., Chow,W., Fungtammasan,A., Kim,J., Lee,C., Ko,B.J., Chaisson,M., Gedman,G.L., Cantin,L.J., Thibaud-Nissen,F., Haggerty,L., Bista,I., Smith,M., Haase,B., Mountcastle,J., Winkler,S., Paez,S., Howard,J., Vernes,S.C., Lama,T.M., Grutzner,F., Warren,W.C., Balakrishnan,C.N., Burt,D., George,J.M., Biegler,M.T., Iorns,D., Digby,A., Eason,D., Robertson,B., Edwards,T., Wilkinson,M., Turner,G., Meyer,A., Kautt,A.F., Franchini,P., Detrich,H.W. III, Svardal,H., Wagner,M., Naylor,G.J.P., Pippel,M., Malinsky,M., Mooney,M., Simbirsky,M., Hannigan,B.T., Pesout,T., Houck,M., Misuraca,A., Kingan,S.B., Hall,R., Kronenberg,Z., Sovic,I., Dunn,C., Ning,Z., Hastie,A., Lee,J., Selvaraj,S., Green,R.E., Putnam,N.H., Gut,I., Ghurye,J., Garrison,E., Sims,Y., Collins,J., Pelan,S., Torrance,J., Tracey,A., Wood,J., Dagnew,R.E., Guan,D., London,S.E., Clayton,D.F., Mello,C.V., Friedrich,S.R., Lovell,P.V., Osipova,E., Al-Ajli,F.O., Secomandi,S., Kim,H., Theofanopoulou,C., Hiller,M., Zhou,Y., Harris,R.S., Makova,K.D., Medvedev,P., Hoffman,J., Masterson,P., Clark,K., Martin,F., Howe,K., Flicek,P., Walenz,B.P., Kwak,W., Clawson,H., Diekhans,M., Nassar,L., Paten,B., Kraus,R.H.S., Crawford,A.J., Gilbert,M.T.P., Zhang,G., Venkatesh,B., Murphy,R.W., Koepfli,K.P., Shapiro,B., Johnson,W.E., Di Palma,F., Marques-Bonet,T., Teeling,E.C., Warnow,T., Graves,J.M., Ryder,O.A., Haussler,D., O'Brien,S.J., Korlach,J., Lewin,H.A., Howe,K., Myers,E.W., Durbin,R., Phillippy,A.M. and Jarvis,E.D. TITLE Towards complete and error-free genome assemblies of all vertebrate species JOURNAL Nature 592 (7856), 737-746 (2021) PUBMED 33911273 REFERENCE 3 (bases 1 to 135) AUTHORS Formenti,G., Rhie,A., Balacco,J., Haase,B., Mountcastle,J., Fedrigo,O., Brown,S., Capodiferro,M.R., Al-Ajli,F.O., Ambrosini,R., Houde,P., Koren,S., Oliver,K., Smith,M., Skelton,J., Betteridge,E., Dolucan,J., Corton,C., Bista,I., Torrance,J., Tracey,A., Wood,J., Uliano-Silva,M., Howe,K., McCarthy,S., Winkler,S., Kwak,W., Korlach,J., Fungtammasan,A., Fordham,D., Costa,V., Mayes,S., Chiara,M., Horner,D.S., Myers,E., Durbin,R., Achilli,A., Braun,E.L., Phillippy,A.M. and Jarvis,E.D. CONSRTM Vertebrate Genomes Project Consortium TITLE Complete vertebrate mitogenomes reveal widespread repeats and gene duplications JOURNAL Genome Biol 22 (1), 120 (2021) PUBMED 33910595 REMARK Publication Status: Online-Only REFERENCE 4 (bases 1 to 135) AUTHORS Teeling,E., Myers,G., Vernes,S., Pippel,M., Winkler,S., Fedrigo,O., Rhie,A., Koren,S., Phillippy,A., Lewin,H., Damas,J., Howe,K., Mountcastle,J. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (17-DEC-2018) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA REFERENCE 5 (bases 1 to 135) AUTHORS Teeling,E., Myers,G., Vernes,S., Pippel,M., Winkler,S., Fedrigo,O., Rhie,A., Koren,S., Phillippy,A., Lewin,H., Damas,J., Howe,K., Mountcastle,J., Jarvis,E.D. and Formenti,G. TITLE Direct Submission JOURNAL Submitted (08-MAY-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT On May 16, 2019 this sequence version replaced gi:1562586953. The Rhinolophus ferrumequinum whole genome shotgun (WGS) project has the project accession RXPC00000000. This version of the project (01) has the accession number RXPC01000000, and consists of sequences RXPC01000001-RXPC01000135. This assembly represents the primary haplotype of the diploid genome Rhinolophus ferrumequinum and includes the chromosomes. The alternate haplotype sequences are in WGS project RXPD00000000. In May 2019 the mitochondrial sequence (RXPC01000135) was added to this 01 version of RXPC00000000. In November 2020 chromosome 1 was changed to chromosome X based on read mapping and homology evidence with other species, and the animal's gender was corrected to female. ##Genome-Assembly-Data-START## Assembly Date :: 07-SEP-2018 Assembly Method :: FALCON-Unzip v. 1.0.2; scaff10X v. git 4.28.2018; Bionano Solve v. BspQI/BssSI 3.2.1; Salsa2 v. HiC 2.0; purge_haplotigs v. bit 7.10.2018; smrtanalysis Arrow polishing & gap filling v. 5.1.0.26412; longranger align v. 2.2.2; FALCON v. 5.1.1; freebayes v. 1.2.0; gEVAL manual curation v. 2018-09-07 Assembly Name :: mRhiFer1_v1.p Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 52.8x Sequencing Technology :: PacBio Sequel; 10X Genomics linked reads; Bionano Genomics 2 enzyme; Phase Genomics HiC ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..135 /organism="Rhinolophus ferrumequinum" /mol_type="genomic DNA" /isolate="MPI-CBG mRhiFer1" /db_xref="taxon:59479" /sex="female" /tissue_type="liver" /country="United Kingdom: Woodchester Mansion, Gloucestershire" /lat_lon="51.7108 N 2.2776 W" /collection_date="2016-05-31" /collected_by="Gareth Jones" WGS RXPC01000001-RXPC01000135 WGS_SCAFLD CM014226-CM014253 WGS_SCAFLD CM016610 // LOCUS RXPD01000000 13424 rc DNA linear MAM 11-AUG-2021 DEFINITION Rhinolophus ferrumequinum isolate MPI-CBG mRhiFer1, whole genome shotgun sequencing project. ACCESSION RXPD00000000 VERSION RXPD00000000.1 DBLINK BioProject: PRJNA489105 BioSample: SAMN09948510 KEYWORDS WGS. SOURCE Rhinolophus ferrumequinum (greater horseshoe bat) ORGANISM Rhinolophus ferrumequinum Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Rhinolophidae; Rhinolophinae; Rhinolophus. REFERENCE 1 (bases 1 to 13424) AUTHORS Koepfli,K.P., Paten,B. and O'Brien,S.J. CONSRTM Genome 10K Community of Scientists TITLE The Genome 10K Project: a way forward JOURNAL Annu Rev Anim Biosci 3, 57-111 (2015) PUBMED 25689317 REFERENCE 2 (bases 1 to 13424) AUTHORS Teeling,E.C., Vernes,S.C., Davalos,L.M., Ray,D.A., Gilbert,M.T.P. and Myers,E. CONSRTM Bat1K Consortium TITLE Bat Biology, Genomes, and the Bat1K Project: To Generate Chromosome-Level Genomes for All Living Bat Species JOURNAL Annu Rev Anim Biosci 6, 23-46 (2018) PUBMED 29166127 REFERENCE 3 (bases 1 to 13424) AUTHORS Jebb,D., Huang,Z., Pippel,M., Hughes,G.M., Lavrichenko,K., Devanna,P., Winkler,S., Jermiin,L.S., Skirmuntt,E.C., Katzourakis,A., Burkitt-Gray,L., Ray,D.A., Sullivan,K.A.M., Roscito,J.G., Kirilenko,B.M., Davalos,L.M., Corthals,A.P., Power,M.L., Jones,G., Ransome,R.D., Dechmann,D.K.N., Locatelli,A.G., Puechmaille,S.J., Fedrigo,O., Jarvis,E.D., Hiller,M., Vernes,S.C., Myers,E.W. and Teeling,E.C. TITLE Six reference-quality genomes reveal evolution of bat adaptations JOURNAL Nature 583 (7817), 578-584 (2020) PUBMED 32699395 REFERENCE 4 (bases 1 to 13424) AUTHORS Rhie,A., McCarthy,S.A., Fedrigo,O., Damas,J., Formenti,G., Koren,S., Uliano-Silva,M., Chow,W., Fungtammasan,A., Kim,J., Lee,C., Ko,B.J., Chaisson,M., Gedman,G.L., Cantin,L.J., Thibaud-Nissen,F., Haggerty,L., Bista,I., Smith,M., Haase,B., Mountcastle,J., Winkler,S., Paez,S., Howard,J., Vernes,S.C., Lama,T.M., Grutzner,F., Warren,W.C., Balakrishnan,C.N., Burt,D., George,J.M., Biegler,M.T., Iorns,D., Digby,A., Eason,D., Robertson,B., Edwards,T., Wilkinson,M., Turner,G., Meyer,A., Kautt,A.F., Franchini,P., Detrich,H.W. III, Svardal,H., Wagner,M., Naylor,G.J.P., Pippel,M., Malinsky,M., Mooney,M., Simbirsky,M., Hannigan,B.T., Pesout,T., Houck,M., Misuraca,A., Kingan,S.B., Hall,R., Kronenberg,Z., Sovic,I., Dunn,C., Ning,Z., Hastie,A., Lee,J., Selvaraj,S., Green,R.E., Putnam,N.H., Gut,I., Ghurye,J., Garrison,E., Sims,Y., Collins,J., Pelan,S., Torrance,J., Tracey,A., Wood,J., Dagnew,R.E., Guan,D., London,S.E., Clayton,D.F., Mello,C.V., Friedrich,S.R., Lovell,P.V., Osipova,E., Al-Ajli,F.O., Secomandi,S., Kim,H., Theofanopoulou,C., Hiller,M., Zhou,Y., Harris,R.S., Makova,K.D., Medvedev,P., Hoffman,J., Masterson,P., Clark,K., Martin,F., Howe,K., Flicek,P., Walenz,B.P., Kwak,W., Clawson,H., Diekhans,M., Nassar,L., Paten,B., Kraus,R.H.S., Crawford,A.J., Gilbert,M.T.P., Zhang,G., Venkatesh,B., Murphy,R.W., Koepfli,K.P., Shapiro,B., Johnson,W.E., Di Palma,F., Marques-Bonet,T., Teeling,E.C., Warnow,T., Graves,J.M., Ryder,O.A., Haussler,D., O'Brien,S.J., Korlach,J., Lewin,H.A., Howe,K., Myers,E.W., Durbin,R., Phillippy,A.M. and Jarvis,E.D. TITLE Towards complete and error-free genome assemblies of all vertebrate species JOURNAL Nature 592 (7856), 737-746 (2021) PUBMED 33911273 REFERENCE 5 (bases 1 to 13424) AUTHORS Formenti,G., Rhie,A., Balacco,J., Haase,B., Mountcastle,J., Fedrigo,O., Brown,S., Capodiferro,M.R., Al-Ajli,F.O., Ambrosini,R., Houde,P., Koren,S., Oliver,K., Smith,M., Skelton,J., Betteridge,E., Dolucan,J., Corton,C., Bista,I., Torrance,J., Tracey,A., Wood,J., Uliano-Silva,M., Howe,K., McCarthy,S., Winkler,S., Kwak,W., Korlach,J., Fungtammasan,A., Fordham,D., Costa,V., Mayes,S., Chiara,M., Horner,D.S., Myers,E., Durbin,R., Achilli,A., Braun,E.L., Phillippy,A.M. and Jarvis,E.D. CONSRTM Vertebrate Genomes Project Consortium TITLE Complete vertebrate mitogenomes reveal widespread repeats and gene duplications JOURNAL Genome Biol 22 (1), 120 (2021) PUBMED 33910595 REMARK Publication Status: Online-Only REFERENCE 6 (bases 1 to 13424) AUTHORS Teeling,E., Myers,G., Vernes,S., Pippel,M., Winkler,S., Fedrigo,O., Rhie,A., Koren,S., Phillippy,A., Lewin,H., Damas,J., Howe,K., Mountcastle,J. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (17-DEC-2018) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Rhinolophus ferrumequinum whole genome shotgun (WGS) project has the project accession RXPD00000000. This version of the project (01) has the accession number RXPD01000000, and consists of sequences RXPD01000001-RXPD01013424. This assembly represents the alternate haplotype of the diploid genome Rhinolophus ferrumequinum. The primary haplotype sequences are in WGS project RXPC00000000. ##Genome-Assembly-Data-START## Assembly Date :: 07-SEP-2018 Assembly Method :: FALCON v. 5.1.1; FALCON unzip v. 1.0.2; purge_haplotigs v. bit 7.10.2018; smrtanalysis Arrow polishing v. 5.1.0.26412; gEVAL manual curation v. 2018-09-07 Assembly Name :: mRhiFer1_v1.h Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 52.8x Sequencing Technology :: PacBio Sequel; 10X Genomics linked reads ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..13424 /organism="Rhinolophus ferrumequinum" /mol_type="genomic DNA" /isolate="MPI-CBG mRhiFer1" /db_xref="taxon:59479" /sex="female" /tissue_type="liver" /country="United Kingdom: Woodchester Mansion, Gloucestershire" /lat_lon="51.7108 N 2.2776 W" /collection_date="2016-05-31" /collected_by="Gareth Jones" WGS RXPD01000001-RXPD01013424 // LOCUS RXXF01000000 3728 rc DNA linear VRT 11-AUG-2021 DEFINITION Strigops habroptila isolate Jane, whole genome shotgun sequencing project. ACCESSION RXXF00000000 VERSION RXXF00000000.1 DBLINK BioProject: PRJNA489134 BioSample: SAMN09948751 KEYWORDS WGS. SOURCE Strigops habroptila (Kakapo) ORGANISM Strigops habroptila Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Psittaciformes; Psittacidae; Strigops. REFERENCE 1 (bases 1 to 3728) AUTHORS Koepfli,K.P., Paten,B. and O'Brien,S.J. CONSRTM Genome 10K Community of Scientists TITLE The Genome 10K Project: a way forward JOURNAL Annu Rev Anim Biosci 3, 57-111 (2015) PUBMED 25689317 REFERENCE 2 (bases 1 to 3728) AUTHORS Rhie,A., McCarthy,S.A., Fedrigo,O., Damas,J., Formenti,G., Koren,S., Uliano-Silva,M., Chow,W., Fungtammasan,A., Kim,J., Lee,C., Ko,B.J., Chaisson,M., Gedman,G.L., Cantin,L.J., Thibaud-Nissen,F., Haggerty,L., Bista,I., Smith,M., Haase,B., Mountcastle,J., Winkler,S., Paez,S., Howard,J., Vernes,S.C., Lama,T.M., Grutzner,F., Warren,W.C., Balakrishnan,C.N., Burt,D., George,J.M., Biegler,M.T., Iorns,D., Digby,A., Eason,D., Robertson,B., Edwards,T., Wilkinson,M., Turner,G., Meyer,A., Kautt,A.F., Franchini,P., Detrich,H.W. III, Svardal,H., Wagner,M., Naylor,G.J.P., Pippel,M., Malinsky,M., Mooney,M., Simbirsky,M., Hannigan,B.T., Pesout,T., Houck,M., Misuraca,A., Kingan,S.B., Hall,R., Kronenberg,Z., Sovic,I., Dunn,C., Ning,Z., Hastie,A., Lee,J., Selvaraj,S., Green,R.E., Putnam,N.H., Gut,I., Ghurye,J., Garrison,E., Sims,Y., Collins,J., Pelan,S., Torrance,J., Tracey,A., Wood,J., Dagnew,R.E., Guan,D., London,S.E., Clayton,D.F., Mello,C.V., Friedrich,S.R., Lovell,P.V., Osipova,E., Al-Ajli,F.O., Secomandi,S., Kim,H., Theofanopoulou,C., Hiller,M., Zhou,Y., Harris,R.S., Makova,K.D., Medvedev,P., Hoffman,J., Masterson,P., Clark,K., Martin,F., Howe,K., Flicek,P., Walenz,B.P., Kwak,W., Clawson,H., Diekhans,M., Nassar,L., Paten,B., Kraus,R.H.S., Crawford,A.J., Gilbert,M.T.P., Zhang,G., Venkatesh,B., Murphy,R.W., Koepfli,K.P., Shapiro,B., Johnson,W.E., Di Palma,F., Marques-Bonet,T., Teeling,E.C., Warnow,T., Graves,J.M., Ryder,O.A., Haussler,D., O'Brien,S.J., Korlach,J., Lewin,H.A., Howe,K., Myers,E.W., Durbin,R., Phillippy,A.M. and Jarvis,E.D. TITLE Towards complete and error-free genome assemblies of all vertebrate species JOURNAL Nature 592 (7856), 737-746 (2021) PUBMED 33911273 REFERENCE 3 (bases 1 to 3728) AUTHORS Formenti,G., Rhie,A., Balacco,J., Haase,B., Mountcastle,J., Fedrigo,O., Brown,S., Capodiferro,M.R., Al-Ajli,F.O., Ambrosini,R., Houde,P., Koren,S., Oliver,K., Smith,M., Skelton,J., Betteridge,E., Dolucan,J., Corton,C., Bista,I., Torrance,J., Tracey,A., Wood,J., Uliano-Silva,M., Howe,K., McCarthy,S., Winkler,S., Kwak,W., Korlach,J., Fungtammasan,A., Fordham,D., Costa,V., Mayes,S., Chiara,M., Horner,D.S., Myers,E., Durbin,R., Achilli,A., Braun,E.L., Phillippy,A.M. and Jarvis,E.D. CONSRTM Vertebrate Genomes Project Consortium TITLE Complete vertebrate mitogenomes reveal widespread repeats and gene duplications JOURNAL Genome Biol 22 (1), 120 (2021) PUBMED 33910595 REMARK Publication Status: Online-Only REFERENCE 4 (bases 1 to 3728) AUTHORS Jarvis,E.D., Howard,J., Rhie,A., Phillippy,A., Korlach,J., Digby,A., Iorns,D., Eason,D., Robertson,B., Raemaekers,T., Howe,K., Lewin,H., Damas,J., Hastie,A. and Fedrigo,O. TITLE Direct Submission JOURNAL Submitted (15-DEC-2018) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Strigops habroptila whole genome shotgun (WGS) project has the project accession RXXF00000000. This version of the project (01) has the accession number RXXF01000000, and consists of sequences RXXF01000001-RXXF01003728. This assembly represents the alternate haplotype of the diploid genome Strigops habroptila. The primary haplotype sequences are in WGS project RXXE00000000. ##Genome-Assembly-Data-START## Assembly Date :: 07-SEP-2018 Assembly Method :: FALCON v. 5.1.1; FALCON unzip v. 1.0.2; smrtanalysis Arrow polishing v. 5.1.0.26412; purge_haplotigs v. bit 7.10.2018; gEVAL manual curation v. 2018-12-11 Assembly Name :: bStrHab1_v1.h Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 76.1x Sequencing Technology :: PacBio RSII; 10X Genomics linked reads ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..3728 /organism="Strigops habroptila" /mol_type="genomic DNA" /isolate="Jane" /db_xref="taxon:2489341" /sex="female" /tissue_type="blood in lysis buffer or EtOH" /country="New Zealand: Anchor Island" /lat_lon="45.757406 S 166.504927 E" /collection_date="2013-04-13" /collected_by="Tim Raemaekers, Daryl Eason, Andrew Digby of Department of Conservation, New Zealand" WGS RXXF01000001-RXXF01003728 // LOCUS JAHYBR010000000 18 rc DNA linear MAM 03-AUG-2021 DEFINITION Dromiciops gliroides isolate mDroGli1, whole genome shotgun sequencing project. ACCESSION JAHYBR000000000 VERSION JAHYBR000000000.1 DBLINK BioProject: PRJNA728141 BioSample: SAMN18857598 KEYWORDS WGS. SOURCE Dromiciops gliroides (monito del monte) ORGANISM Dromiciops gliroides Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Microbiotheria; Microbiotheriidae; Dromiciops. REFERENCE 1 (bases 1 to 18) AUTHORS Nespolo,R., Quintero,J., Brown,T., Formenti,G., Pippel,M., Winkler,S., Tracey,A., Chow,W., Howe,K., Saenz-Agudelo,P., Fedrigo,O., Johnson,W., Myers,G. and Jarvis,E.D. TITLE Dromiciops gliroides (monito del monte) genome, mDroGli1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 18) AUTHORS Nespolo,R., Quintero,J., Brown,T., Formenti,G., Pippel,M., Winkler,S., Tracey,A., Chow,W., Howe,K., Saenz-Agudelo,P., Fedrigo,O., Johnson,W., Myers,G. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (14-JUL-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Dromiciops gliroides whole genome shotgun (WGS) project has the project accession JAHYBR000000000. This version of the project (01) has the accession number JAHYBR010000000, and consists of sequences JAHYBR010000001-JAHYBR010000018. ##Genome-Assembly-Data-START## Assembly Date :: 07-APR-2021 Assembly Method :: FALCON kit v. 1.8.1; FALCON unzip v. 1.3.7; purge_dups v. 1.2.3; Scaff10X v. 4.2; Bionano Solve v. 3.5.1_01142020; Salsa Hi-C v. 2.2; GCPP v. 1.9.0-SL-release-8.0.0+1-37-gd7b188d; longranger v. 2.2.2; freebayes v. 1.3.2; gEVAL manual curation v. 2021-04-07; VGP pipeline v. 1.6 Assembly Name :: mDroGli1.pri Diploid :: Principal Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 63.0x Sequencing Technology :: PacBio Sequel II CLRQ; 10X Genomics linked reads; Bionano Genomics DLS; Arima Genomics v1 Hi-C ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..18 /organism="Dromiciops gliroides" /mol_type="genomic DNA" /isolate="mDroGli1" /db_xref="taxon:33562" /sex="female" /tissue_type="kidney, liver" /dev_stage="adult" /country="Chile: San Martin, comuna de Valdivia, Region de los Rios" /lat_lon="39.647794 S 73.196942 W" /collection_date="2014-02-10" /collected_by="Roberto Nespolo, Julian Quintero" WGS JAHYBR010000001-JAHYBR010000018 WGS_SCAFLD CM033365-CM033371 WGS_SCAFLD CM033468 // LOCUS JAHYBS010000000 9926 rc DNA linear MAM 29-JUL-2021 DEFINITION Dromiciops gliroides isolate mDroGli1, whole genome shotgun sequencing project. ACCESSION JAHYBS000000000 VERSION JAHYBS000000000.1 DBLINK BioProject: PRJNA728142 BioSample: SAMN18857598 KEYWORDS WGS. SOURCE Dromiciops gliroides (monito del monte) ORGANISM Dromiciops gliroides Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Microbiotheria; Microbiotheriidae; Dromiciops. REFERENCE 1 (bases 1 to 9926) AUTHORS Nespolo,R., Quintero,J., Brown,T., Formenti,G., Pippel,M., Winkler,S., Tracey,A., Chow,W., Howe,K., Saenz-Agudelo,P., Fedrigo,O., Johnson,W., Myers,G. and Jarvis,E.D. TITLE Dromiciops gliroides (monito del monte) genome, mDroGli1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 9926) AUTHORS Nespolo,R., Quintero,J., Brown,T., Formenti,G., Pippel,M., Winkler,S., Tracey,A., Chow,W., Howe,K., Saenz-Agudelo,P., Fedrigo,O., Johnson,W., Myers,G. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (14-JUL-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Dromiciops gliroides whole genome shotgun (WGS) project has the project accession JAHYBS000000000. This version of the project (01) has the accession number JAHYBS010000000, and consists of sequences JAHYBS010000001-JAHYBS010009926. ##Genome-Assembly-Data-START## Assembly Date :: 07-APR-2021 Assembly Method :: FALCON kit v. 1.8.1; FALCON unzip v. 1.3.7; purge_dups v. 1.2.3; Scaff10X v. 4.2; Bionano Solve v. 3.5.1_01142020; Salsa Hi-C v. 2.2; GCPP v. 1.9.0-SL-release-8.0.0+1-37-gd7b188d; longranger v. 2.2.2; freebayes v. 1.3.2; gEVAL manual curation v. 2021-04-07; VGP pipeline v. 1.6 Assembly Name :: mDroGli1.alt Diploid :: Alternate Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 63.0x Sequencing Technology :: PacBio Sequel II CLR; 10X Genomics linked reads; Bionano Genomics DLS; Arima Genomics v1 Hi-C ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..9926 /organism="Dromiciops gliroides" /mol_type="genomic DNA" /isolate="mDroGli1" /db_xref="taxon:33562" /sex="female" /tissue_type="kidney, liver" /dev_stage="adult" /country="Chile: San Martin, comuna de Valdivia, Region de los Rios" /lat_lon="39.647794 S 73.196942 W" /collection_date="2014-02-10" /collected_by="Roberto Nespolo, Julian Quintero" WGS JAHYBS010000001-JAHYBS010009926 // LOCUS CAJVRZ010000000 60 rc DNA linear INV 28-JUL-2021 DEFINITION Furcula furcula, whole genome shotgun sequencing project. ACCESSION CAJVRZ000000000 VERSION CAJVRZ000000000.1 DBLINK BioProject: PRJEB46629 BioSample: SAMEA7746637 KEYWORDS WGS. SOURCE Furcula furcula ORGANISM Furcula furcula Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Notodontidae; Stauropinae; Furcula. REFERENCE 1 (bases 1 to 60) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (26-JUL-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Furcula furcula whole genome shotgun (WGS) project has the project accession CAJVRZ000000000. This version of the project (01) has the accession number CAJVRZ010000000, and consists of sequences CAJVRZ010000001-CAJVRZ010000060. The assembly ilFurFurc1.1 is based on 28x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..60 /organism="Furcula furcula" /mol_type="genomic DNA" /db_xref="taxon:987943" WGS CAJVRZ010000001-CAJVRZ010000060 // LOCUS CAJVRW010000000 4352 rc DNA linear INV 28-JUL-2021 DEFINITION Pterostichus madidus, whole genome shotgun sequencing project. ACCESSION CAJVRW000000000 VERSION CAJVRW000000000.1 DBLINK BioProject: PRJEB46628 BioSample: SAMEA7520318 KEYWORDS WGS. SOURCE Pterostichus madidus ORGANISM Pterostichus madidus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Adephaga; Caraboidea; Carabidae; Harpalinae; Pterostichini; Pterostichus; Steropus. REFERENCE 1 (bases 1 to 4352) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (26-JUL-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Pterostichus madidus whole genome shotgun (WGS) project has the project accession CAJVRW000000000. This version of the project (01) has the accession number CAJVRW010000000, and consists of sequences CAJVRW010000001-CAJVRW010004352. The assembly icPteMadi1.1 is based on 34x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Some regions of the genome have large repeats with less certain structure than the rest of the assembly, most notably chromosomes 14,15 and 18. Chromosome 14 from 23.8mb onwards has strong Hi-C association with chromosome 18. FEATURES Location/Qualifiers source 1..4352 /organism="Pterostichus madidus" /mol_type="genomic DNA" /db_xref="taxon:767470" WGS CAJVRW010000001-CAJVRW010004352 // LOCUS CAJVRV010000000 50 rc DNA linear INV 28-JUL-2021 DEFINITION Pammene fasciana, whole genome shotgun sequencing project. ACCESSION CAJVRV000000000 VERSION CAJVRV000000000.1 DBLINK BioProject: PRJEB46631 BioSample: SAMEA7701530 KEYWORDS WGS. SOURCE Pammene fasciana ORGANISM Pammene fasciana Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Tortricoidea; Tortricidae; Olethreutinae; Grapholitini; Pammene. REFERENCE 1 (bases 1 to 50) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (26-JUL-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Pammene fasciana whole genome shotgun (WGS) project has the project accession CAJVRV000000000. This version of the project (01) has the accession number CAJVRV010000000, and consists of sequences CAJVRV010000001-CAJVRV010000050. The assembly ilPamFasc1.1 is based on 36x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..50 /organism="Pammene fasciana" /mol_type="genomic DNA" /db_xref="taxon:1101027" WGS CAJVRV010000001-CAJVRV010000050 // LOCUS CAJVRR010000000 1530 rc DNA linear INV 28-JUL-2021 DEFINITION Peribatodes rhomboidaria, whole genome shotgun sequencing project. ACCESSION CAJVRR000000000 VERSION CAJVRR000000000.1 DBLINK BioProject: PRJEB46634 BioSample: SAMEA7701524 KEYWORDS WGS. SOURCE Peribatodes rhomboidaria (willow beauty) ORGANISM Peribatodes rhomboidaria Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Ennominae; Peribatodes. REFERENCE 1 (bases 1 to 1530) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (26-JUL-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Peribatodes rhomboidaria whole genome shotgun (WGS) project has the project accession CAJVRR000000000. This version of the project (01) has the accession number CAJVRR010000000, and consists of sequences CAJVRR010000001-CAJVRR010001530. The assembly ilPerRhom1.1 is based on 44x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..1530 /organism="Peribatodes rhomboidaria" /mol_type="genomic DNA" /db_xref="taxon:190356" WGS CAJVRR010000001-CAJVRR010001530 // LOCUS CAJVRS010000000 1396 rc DNA linear INV 28-JUL-2021 DEFINITION Marthasterias glacialis, whole genome shotgun sequencing project. ACCESSION CAJVRS000000000 VERSION CAJVRS000000000.1 DBLINK BioProject: PRJEB46623 BioSample: SAMEA7522991 KEYWORDS WGS. SOURCE Marthasterias glacialis (spiny starfish) ORGANISM Marthasterias glacialis Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Asterozoa; Asteroidea; Forcipulatacea; Forcipulatida; Asteriidae; Marthasterias. REFERENCE 1 (bases 1 to 1396) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (26-JUL-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Marthasterias glacialis whole genome shotgun (WGS) project has the project accession CAJVRS000000000. This version of the project (01) has the accession number CAJVRS010000000, and consists of sequences CAJVRS010000001-CAJVRS010001396. The assembly eaMarGlac1.1 is based on 49x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..1396 /organism="Marthasterias glacialis" /mol_type="genomic DNA" /db_xref="taxon:7609" WGS CAJVRS010000001-CAJVRS010001396 // LOCUS CAJVRO010000000 554 rc DNA linear INV 28-JUL-2021 DEFINITION Apoderus coryli, whole genome shotgun sequencing project. ACCESSION CAJVRO000000000 VERSION CAJVRO000000000.1 DBLINK BioProject: PRJEB46625 BioSample: SAMEA7520690 KEYWORDS WGS. SOURCE Apoderus coryli (hazel leaf roller) ORGANISM Apoderus coryli Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Attelabidae; Apoderinae; Apoderus. REFERENCE 1 (bases 1 to 554) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (26-JUL-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Apoderus coryli whole genome shotgun (WGS) project has the project accession CAJVRO000000000. This version of the project (01) has the accession number CAJVRO010000000, and consists of sequences CAJVRO010000001-CAJVRO010000554. The assembly icApoCory1.1 is based on 59x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..554 /organism="Apoderus coryli" /mol_type="genomic DNA" /db_xref="taxon:201766" WGS CAJVRO010000001-CAJVRO010000554 // LOCUS CAJVRT010000000 84 rc DNA linear INV 28-JUL-2021 DEFINITION Marthasterias glacialis, whole genome shotgun sequencing project. ACCESSION CAJVRT000000000 VERSION CAJVRT000000000.1 DBLINK BioProject: PRJEB46624 BioSample: SAMEA7522991 KEYWORDS WGS. SOURCE Marthasterias glacialis (spiny starfish) ORGANISM Marthasterias glacialis Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Asterozoa; Asteroidea; Forcipulatacea; Forcipulatida; Asteriidae; Marthasterias. REFERENCE 1 (bases 1 to 84) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (26-JUL-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Marthasterias glacialis whole genome shotgun (WGS) project has the project accession CAJVRT000000000. This version of the project (01) has the accession number CAJVRT010000000, and consists of sequences CAJVRT010000001-CAJVRT010000084. The assembly eaMarGlac1.1 is based on 49x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..84 /organism="Marthasterias glacialis" /mol_type="genomic DNA" /db_xref="taxon:7609" WGS CAJVRT010000001-CAJVRT010000084 // LOCUS CAJVRQ010000000 108 rc DNA linear INV 28-JUL-2021 DEFINITION Apoderus coryli, whole genome shotgun sequencing project. ACCESSION CAJVRQ000000000 VERSION CAJVRQ000000000.1 DBLINK BioProject: PRJEB46626 BioSample: SAMEA7520690 KEYWORDS WGS. SOURCE Apoderus coryli (hazel leaf roller) ORGANISM Apoderus coryli Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Attelabidae; Apoderinae; Apoderus. REFERENCE 1 (bases 1 to 108) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (26-JUL-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Apoderus coryli whole genome shotgun (WGS) project has the project accession CAJVRQ000000000. This version of the project (01) has the accession number CAJVRQ010000000, and consists of sequences CAJVRQ010000001-CAJVRQ010000108. The assembly icApoCory1.1 is based on 59x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..108 /organism="Apoderus coryli" /mol_type="genomic DNA" /db_xref="taxon:201766" WGS CAJVRQ010000001-CAJVRQ010000108 // LOCUS CAJVRX010000000 5 rc DNA linear INV 28-JUL-2021 DEFINITION Pammene fasciana, whole genome shotgun sequencing project. ACCESSION CAJVRX000000000 VERSION CAJVRX000000000.1 DBLINK BioProject: PRJEB46632 BioSample: SAMEA7701530 KEYWORDS WGS. SOURCE Pammene fasciana ORGANISM Pammene fasciana Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Tortricoidea; Tortricidae; Olethreutinae; Grapholitini; Pammene. REFERENCE 1 (bases 1 to 5) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (26-JUL-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Pammene fasciana whole genome shotgun (WGS) project has the project accession CAJVRX000000000. This version of the project (01) has the accession number CAJVRX010000000, and consists of sequences CAJVRX010000001-CAJVRX010000005. The assembly ilPamFasc1.1 is based on 36x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..5 /organism="Pammene fasciana" /mol_type="genomic DNA" /db_xref="taxon:1101027" WGS CAJVRX010000001-CAJVRX010000005 // LOCUS CAJVRY010000000 8 rc DNA linear INV 28-JUL-2021 DEFINITION Pterostichus madidus, whole genome shotgun sequencing project. ACCESSION CAJVRY000000000 VERSION CAJVRY000000000.1 DBLINK BioProject: PRJEB46627 BioSample: SAMEA7520318 KEYWORDS WGS. SOURCE Pterostichus madidus ORGANISM Pterostichus madidus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Adephaga; Caraboidea; Carabidae; Harpalinae; Pterostichini; Pterostichus; Steropus. REFERENCE 1 (bases 1 to 8) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (26-JUL-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Pterostichus madidus whole genome shotgun (WGS) project has the project accession CAJVRY000000000. This version of the project (01) has the accession number CAJVRY010000000, and consists of sequences CAJVRY010000001-CAJVRY010000008. The assembly icPteMadi1.1 is based on 34x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Some regions of the genome have large repeats with less certain structure than the rest of the assembly, most notably chromosomes 14,15 and 18. Chromosome 14 from 23.8mb onwards has strong Hi-C association with chromosome 18. FEATURES Location/Qualifiers source 1..8 /organism="Pterostichus madidus" /mol_type="genomic DNA" /db_xref="taxon:767470" WGS CAJVRY010000001-CAJVRY010000008 // LOCUS CAJVRP010000000 5 rc DNA linear INV 28-JUL-2021 DEFINITION Peribatodes rhomboidaria, whole genome shotgun sequencing project. ACCESSION CAJVRP000000000 VERSION CAJVRP000000000.1 DBLINK BioProject: PRJEB46633 BioSample: SAMEA7701524 KEYWORDS WGS. SOURCE Peribatodes rhomboidaria (willow beauty) ORGANISM Peribatodes rhomboidaria Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Ennominae; Peribatodes. REFERENCE 1 (bases 1 to 5) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (26-JUL-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Peribatodes rhomboidaria whole genome shotgun (WGS) project has the project accession CAJVRP000000000. This version of the project (01) has the accession number CAJVRP010000000, and consists of sequences CAJVRP010000001-CAJVRP010000005. The assembly ilPerRhom1.1 is based on 44x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..5 /organism="Peribatodes rhomboidaria" /mol_type="genomic DNA" /db_xref="taxon:190356" WGS CAJVRP010000001-CAJVRP010000005 // LOCUS CAJVRU010000000 3 rc DNA linear INV 28-JUL-2021 DEFINITION Furcula furcula, whole genome shotgun sequencing project. ACCESSION CAJVRU000000000 VERSION CAJVRU000000000.1 DBLINK BioProject: PRJEB46630 BioSample: SAMEA7746637 KEYWORDS WGS. SOURCE Furcula furcula ORGANISM Furcula furcula Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Notodontidae; Stauropinae; Furcula. REFERENCE 1 (bases 1 to 3) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (26-JUL-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Furcula furcula whole genome shotgun (WGS) project has the project accession CAJVRU000000000. This version of the project (01) has the accession number CAJVRU010000000, and consists of sequences CAJVRU010000001-CAJVRU010000003. The assembly ilFurFurc1.1 is based on 28x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..3 /organism="Furcula furcula" /mol_type="genomic DNA" /db_xref="taxon:987943" WGS CAJVRU010000001-CAJVRU010000003 // LOCUS APVN02000000 46619 rc DNA linear INV 27-JUL-2021 DEFINITION Ladona fulva isolate sampled in the wild, whole genome shotgun sequencing project. ACCESSION APVN00000000 VERSION APVN00000000.2 DBLINK BioProject: PRJNA194433 BioSample: SAMN02178325 KEYWORDS WGS. SOURCE Ladona fulva (scarce chaser) ORGANISM Ladona fulva Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Palaeoptera; Odonata; Epiprocta; Anisoptera; Libellulidae; Ladona. REFERENCE 1 (bases 1 to 46619) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hernandez,B., Skinner,E., Javaid,M., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Hughes,D., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Ladona fulva Genome sequencing and assembly JOURNAL Unpublished REFERENCE 2 (bases 1 to 46619) AUTHORS Qu,J., Murali,S.C., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Downs,B., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R.D., Hernandez,B., Javaid,M., Jayaseelan,J.C., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Ongeri,F., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Richards,S., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (01-APR-2013) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA REFERENCE 3 (bases 1 to 46619) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hughes,D., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Osuji,N., Pu,L.-L., Puazo,M., Skinner,E., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (26-OCT-2017) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA REFERENCE 4 (bases 1 to 46619) AUTHORS Provataris,P., Ahn,S.-J., Jones,J., Niehuis,O., Robertson,H.M., Southgate,A., Poelchau,M.F., Hughes,D.S.T. and Richards,S. TITLE Direct Submission JOURNAL Submitted (19-JAN-2021) National Agricultural Library, USDA-ARS, 2150 Centre Ave, Fort Collins, CO 80526, USA REMARK ? COMMENT On Oct 31, 2017 this sequence version replaced APVN00000000.1. The Ladona fulva whole genome shotgun (WGS) project has the project accession APVN00000000. This version of the project (02) has the accession number APVN02000000, and consists of sequences APVN02000001-APVN02046619. Annotation was added to the contigs and scaffolds on July 2021. ##Genome-Assembly-Data-START## Assembly Date :: APR-2016 Assembly Method :: AllPaths v. 35218; ATLAS-link v. 1.0; ATLAS-gapfill v. 2.2; redundans v. 0.12c Assembly Name :: Lful_2.0 Expected Final Version :: no Genome Coverage :: 131.2x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..46619 /organism="Ladona fulva" /mol_type="genomic DNA" /isolate="sampled in the wild" /db_xref="taxon:123851" /sex="male" /country="Germany: Rhineland-Palatinate" /collection_date="07-May-2011" WGS APVN02000001-APVN02046619 WGS_SCAFLD KZ308113-KZ312454 // LOCUS CAJVQL010000000 716 rc DNA linear INV 21-JUL-2021 DEFINITION Thymelicus sylvestris, whole genome shotgun sequencing project. ACCESSION CAJVQL000000000 VERSION CAJVQL000000000.1 DBLINK BioProject: PRJEB46434 BioSample: SAMEA7523279 KEYWORDS WGS. SOURCE Thymelicus sylvestris (small skipper) ORGANISM Thymelicus sylvestris Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Hesperioidea; Hesperiidae; Hesperiinae; Hesperiini; Thymelicus. REFERENCE 1 (bases 1 to 716) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (19-JUL-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Thymelicus sylvestris whole genome shotgun (WGS) project has the project accession CAJVQL000000000. This version of the project (01) has the accession number CAJVQL010000000, and consists of sequences CAJVQL010000001-CAJVQL010000716. The assembly ilThySylv1.1 is based on 40x PacBio data, 10X Genomics Chromium data, and Qiagen Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..716 /organism="Thymelicus sylvestris" /mol_type="genomic DNA" /db_xref="taxon:272628" WGS CAJVQL010000001-CAJVQL010000716 // LOCUS CAJVQJ010000000 136 rc DNA linear INV 21-JUL-2021 DEFINITION Dolichovespula media, whole genome shotgun sequencing project. ACCESSION CAJVQJ000000000 VERSION CAJVQJ000000000.1 DBLINK BioProject: PRJEB46435 BioSample: SAMEA7520488 KEYWORDS WGS. SOURCE Dolichovespula media (median wasp) ORGANISM Dolichovespula media Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Vespoidea; Vespidae; Vespinae; Dolichovespula. REFERENCE 1 (bases 1 to 136) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (19-JUL-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Dolichovespula media whole genome shotgun (WGS) project has the project accession CAJVQJ000000000. This version of the project (01) has the accession number CAJVQJ010000000, and consists of sequences CAJVQJ010000001-CAJVQJ010000136. The assembly iyDolMedi1.1 is based on 74x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..136 /organism="Dolichovespula media" /mol_type="genomic DNA" /db_xref="taxon:881891" WGS CAJVQJ010000001-CAJVQJ010000136 // LOCUS CAJVRE010000000 115 rc DNA linear INV 22-JUL-2021 DEFINITION Bombus sylvestris, whole genome shotgun sequencing project. ACCESSION CAJVRE000000000 VERSION CAJVRE000000000.1 DBLINK BioProject: PRJEB46443 BioSample: SAMEA7520657 KEYWORDS WGS. SOURCE Bombus sylvestris (Psithyrus sylvestris) ORGANISM Bombus sylvestris Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Apidae; Bombus; Psithyrus. REFERENCE 1 (bases 1 to 115) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (20-JUL-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Bombus sylvestris whole genome shotgun (WGS) project has the project accession CAJVRE000000000. This version of the project (01) has the accession number CAJVRE010000000, and consists of sequences CAJVRE010000001-CAJVRE010000115. The assembly iyBomSyle1.1 is based on 79x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..115 /organism="Bombus sylvestris" /mol_type="genomic DNA" /db_xref="taxon:30201" WGS CAJVRE010000001-CAJVRE010000115 // LOCUS CAJVQN010000000 2373 rc DNA linear INV 21-JUL-2021 DEFINITION Aelia acuminata, whole genome shotgun sequencing project. ACCESSION CAJVQN000000000 VERSION CAJVQN000000000.1 DBLINK BioProject: PRJEB46427 BioSample: SAMEA7520338 KEYWORDS WGS. SOURCE Aelia acuminata ORGANISM Aelia acuminata Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera; Panheteroptera; Pentatomomorpha; Pentatomoidea; Pentatomidae; Pentatominae; Aelia. REFERENCE 1 (bases 1 to 2373) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (19-JUL-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Aelia acuminata whole genome shotgun (WGS) project has the project accession CAJVQN000000000. This version of the project (01) has the accession number CAJVQN010000000, and consists of sequences CAJVQN010000001-CAJVQN010002373. The assembly ihAelAcum1.1 is based on 31x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..2373 /organism="Aelia acuminata" /mol_type="genomic DNA" /db_xref="taxon:1511221" WGS CAJVQN010000001-CAJVQN010002373 // LOCUS CAJVQV010000000 1551 rc DNA linear INV 21-JUL-2021 DEFINITION Chrysotoxum bicinctum, whole genome shotgun sequencing project. ACCESSION CAJVQV000000000 VERSION CAJVQV000000000.1 DBLINK BioProject: PRJEB46424 BioSample: SAMEA7520032 KEYWORDS WGS. SOURCE Chrysotoxum bicinctum ORGANISM Chrysotoxum bicinctum Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Syrphoidea; Syrphidae; Syrphinae; Syrphini; Chrysotoxum. REFERENCE 1 (bases 1 to 1551) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (19-JUL-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Chrysotoxum bicinctum whole genome shotgun (WGS) project has the project accession CAJVQV000000000. This version of the project (01) has the accession number CAJVQV010000000, and consists of sequences CAJVQV010000001-CAJVQV010001551. The assembly idChrBici1.1 is based on 29x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..1551 /organism="Chrysotoxum bicinctum" /mol_type="genomic DNA" /db_xref="taxon:323313" WGS CAJVQV010000001-CAJVQV010001551 // LOCUS CAJVQM010000000 42 rc DNA linear INV 21-JUL-2021 DEFINITION Pyrgus malvae, whole genome shotgun sequencing project. ACCESSION CAJVQM000000000 VERSION CAJVQM000000000.1 DBLINK BioProject: PRJEB46431 BioSample: SAMEA7523277 KEYWORDS WGS. SOURCE Pyrgus malvae (grizzled skipper) ORGANISM Pyrgus malvae Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Hesperioidea; Hesperiidae; Pyrginae; Pyrgus. REFERENCE 1 (bases 1 to 42) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (19-JUL-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Pyrgus malvae whole genome shotgun (WGS) project has the project accession CAJVQM000000000. This version of the project (01) has the accession number CAJVQM010000000, and consists of sequences CAJVQM010000001-CAJVQM010000042. The assembly ilPyrMalv3.1 is based on 69x PacBio data, 10X Genomics Chromium data, and Qiagen Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..42 /organism="Pyrgus malvae" /mol_type="genomic DNA" /db_xref="taxon:218760" WGS CAJVQM010000001-CAJVQM010000042 // LOCUS CAJVQP010000000 527 rc DNA linear INV 21-JUL-2021 DEFINITION Apamea monoglypha, whole genome shotgun sequencing project. ACCESSION CAJVQP000000000 VERSION CAJVQP000000000.1 DBLINK BioProject: PRJEB46429 BioSample: SAMEA7701555 KEYWORDS WGS. SOURCE Apamea monoglypha ORGANISM Apamea monoglypha Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Noctuinae; Apameini; Apamea. REFERENCE 1 (bases 1 to 527) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (19-JUL-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Apamea monoglypha whole genome shotgun (WGS) project has the project accession CAJVQP000000000. This version of the project (01) has the accession number CAJVQP010000000, and consists of sequences CAJVQP010000001-CAJVQP010000527. The assembly ilApaMono1.1 is based on 25x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..527 /organism="Apamea monoglypha" /mol_type="genomic DNA" /db_xref="taxon:875885" WGS CAJVQP010000001-CAJVQP010000527 // LOCUS CAJVQQ010000000 792 rc DNA linear INV 21-JUL-2021 DEFINITION Cantharis rustica, whole genome shotgun sequencing project. ACCESSION CAJVQQ000000000 VERSION CAJVQQ000000000.1 DBLINK BioProject: PRJEB46422 BioSample: SAMEA7524272 KEYWORDS WGS. SOURCE Cantharis rustica ORGANISM Cantharis rustica Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Elateriformia; Elateroidea; Cantharidae; Cantharinae; Cantharis. REFERENCE 1 (bases 1 to 792) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (19-JUL-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Cantharis rustica whole genome shotgun (WGS) project has the project accession CAJVQQ000000000. This version of the project (01) has the accession number CAJVQQ010000000, and consists of sequences CAJVQQ010000001-CAJVQQ010000792. The assembly icCanRust1.1 is based on 43x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Chromosome 2 contains a large heterochromatic region of low confidence at approximately 20-46Mb. This block consists of a number of scaffolds with high repeat content that can be localised to chromosome 2 but their order and orientation with respect to each other is unsure. Large islands of similar tandem repeat with high GC content are observed near both poles of Chromosome 1. Small islands of a related repeat are observed in all other chromosomes. FEATURES Location/Qualifiers source 1..792 /organism="Cantharis rustica" /mol_type="genomic DNA" /db_xref="taxon:195172" WGS CAJVQQ010000001-CAJVQQ010000792 // LOCUS CAJVQK010000000 948 rc DNA linear INV 21-JUL-2021 DEFINITION Dolichovespula media, whole genome shotgun sequencing project. ACCESSION CAJVQK000000000 VERSION CAJVQK000000000.1 DBLINK BioProject: PRJEB46436 BioSample: SAMEA7520488 KEYWORDS WGS. SOURCE Dolichovespula media (median wasp) ORGANISM Dolichovespula media Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Vespoidea; Vespidae; Vespinae; Dolichovespula. REFERENCE 1 (bases 1 to 948) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (19-JUL-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Dolichovespula media whole genome shotgun (WGS) project has the project accession CAJVQK000000000. This version of the project (01) has the accession number CAJVQK010000000, and consists of sequences CAJVQK010000001-CAJVQK010000948. The assembly iyDolMedi1.1 is based on 74x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..948 /organism="Dolichovespula media" /mol_type="genomic DNA" /db_xref="taxon:881891" WGS CAJVQK010000001-CAJVQK010000948 // LOCUS CAJVQY010000000 40 rc DNA linear INV 21-JUL-2021 DEFINITION Bombus hypnorum, whole genome shotgun sequencing project. ACCESSION CAJVQY000000000 VERSION CAJVQY000000000.1 DBLINK BioProject: PRJEB46442 BioSample: SAMEA7520655 KEYWORDS WGS. SOURCE Bombus hypnorum ORGANISM Bombus hypnorum Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Apidae; Bombus; Pyrobombus. REFERENCE 1 (bases 1 to 40) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (19-JUL-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Bombus hypnorum whole genome shotgun (WGS) project has the project accession CAJVQY000000000. This version of the project (01) has the accession number CAJVQY010000000, and consists of sequences CAJVQY010000001-CAJVQY010000040. The assembly iyBomHypn1.1 is based on 33x PacBio data, 10X Genomics Chromium data, and Arima2 Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..40 /organism="Bombus hypnorum" /mol_type="genomic DNA" /db_xref="taxon:30191" WGS CAJVQY010000001-CAJVQY010000040 // LOCUS CAJVQU010000000 73 rc DNA linear INV 21-JUL-2021 DEFINITION Aelia acuminata, whole genome shotgun sequencing project. ACCESSION CAJVQU000000000 VERSION CAJVQU000000000.1 DBLINK BioProject: PRJEB46426 BioSample: SAMEA7520338 KEYWORDS WGS. SOURCE Aelia acuminata ORGANISM Aelia acuminata Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera; Panheteroptera; Pentatomomorpha; Pentatomoidea; Pentatomidae; Pentatominae; Aelia. REFERENCE 1 (bases 1 to 73) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (19-JUL-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Aelia acuminata whole genome shotgun (WGS) project has the project accession CAJVQU000000000. This version of the project (01) has the accession number CAJVQU010000000, and consists of sequences CAJVQU010000001-CAJVQU010000073. The assembly ihAelAcum1.1 is based on 31x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..73 /organism="Aelia acuminata" /mol_type="genomic DNA" /db_xref="taxon:1511221" WGS CAJVQU010000001-CAJVQU010000073 // LOCUS CAJVQX010000000 86 rc DNA linear INV 21-JUL-2021 DEFINITION Dolichovespula saxonica, whole genome shotgun sequencing project. ACCESSION CAJVQX000000000 VERSION CAJVQX000000000.1 DBLINK BioProject: PRJEB46444 BioSample: SAMEA7520489 KEYWORDS WGS. SOURCE Dolichovespula saxonica ORGANISM Dolichovespula saxonica Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Vespoidea; Vespidae; Vespinae; Dolichovespula. REFERENCE 1 (bases 1 to 86) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (19-JUL-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Dolichovespula saxonica whole genome shotgun (WGS) project has the project accession CAJVQX000000000. This version of the project (01) has the accession number CAJVQX010000000, and consists of sequences CAJVQX010000001-CAJVQX010000086. The assembly iyDolSaxo1.1 is based on 27x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..86 /organism="Dolichovespula saxonica" /mol_type="genomic DNA" /db_xref="taxon:85443" WGS CAJVQX010000001-CAJVQX010000086 // LOCUS CAJVQW010000000 87 rc DNA linear INV 21-JUL-2021 DEFINITION Chrysotoxum bicinctum, whole genome shotgun sequencing project. ACCESSION CAJVQW000000000 VERSION CAJVQW000000000.1 DBLINK BioProject: PRJEB46425 BioSample: SAMEA7520032 KEYWORDS WGS. SOURCE Chrysotoxum bicinctum ORGANISM Chrysotoxum bicinctum Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Syrphoidea; Syrphidae; Syrphinae; Syrphini; Chrysotoxum. REFERENCE 1 (bases 1 to 87) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (19-JUL-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Chrysotoxum bicinctum whole genome shotgun (WGS) project has the project accession CAJVQW000000000. This version of the project (01) has the accession number CAJVQW010000000, and consists of sequences CAJVQW010000001-CAJVQW010000087. The assembly idChrBici1.1 is based on 29x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..87 /organism="Chrysotoxum bicinctum" /mol_type="genomic DNA" /db_xref="taxon:323313" WGS CAJVQW010000001-CAJVQW010000087 // LOCUS CAJVQO010000000 10 rc DNA linear INV 21-JUL-2021 DEFINITION Cantharis rustica, whole genome shotgun sequencing project. ACCESSION CAJVQO000000000 VERSION CAJVQO000000000.1 DBLINK BioProject: PRJEB46423 BioSample: SAMEA7524272 KEYWORDS WGS. SOURCE Cantharis rustica ORGANISM Cantharis rustica Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Elateriformia; Elateroidea; Cantharidae; Cantharinae; Cantharis. REFERENCE 1 (bases 1 to 10) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (19-JUL-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Cantharis rustica whole genome shotgun (WGS) project has the project accession CAJVQO000000000. This version of the project (01) has the accession number CAJVQO010000000, and consists of sequences CAJVQO010000001-CAJVQO010000010. The assembly icCanRust1.1 is based on 43x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Chromosome 2 contains a large heterochromatic region of low confidence at approximately 20-46Mb. This block consists of a number of scaffolds with high repeat content that can be localised to chromosome 2 but their order and orientation with respect to each other is unsure. Large islands of similar tandem repeat with high GC content are observed near both poles of Chromosome 1. Small islands of a related repeat are observed in all other chromosomes. FEATURES Location/Qualifiers source 1..10 /organism="Cantharis rustica" /mol_type="genomic DNA" /db_xref="taxon:195172" WGS CAJVQO010000001-CAJVQO010000010 // LOCUS CAJVQS010000000 16 rc DNA linear INV 21-JUL-2021 DEFINITION Apamea monoglypha, whole genome shotgun sequencing project. ACCESSION CAJVQS000000000 VERSION CAJVQS000000000.1 DBLINK BioProject: PRJEB46430 BioSample: SAMEA7701555 KEYWORDS WGS. SOURCE Apamea monoglypha ORGANISM Apamea monoglypha Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Noctuinae; Apameini; Apamea. REFERENCE 1 (bases 1 to 16) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (19-JUL-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Apamea monoglypha whole genome shotgun (WGS) project has the project accession CAJVQS000000000. This version of the project (01) has the accession number CAJVQS010000000, and consists of sequences CAJVQS010000001-CAJVQS010000016. The assembly ilApaMono1.1 is based on 25x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..16 /organism="Apamea monoglypha" /mol_type="genomic DNA" /db_xref="taxon:875885" WGS CAJVQS010000001-CAJVQS010000016 // LOCUS CAJVQT010000000 5 rc DNA linear INV 21-JUL-2021 DEFINITION Pyrgus malvae, whole genome shotgun sequencing project. ACCESSION CAJVQT000000000 VERSION CAJVQT000000000.1 DBLINK BioProject: PRJEB46432 BioSample: SAMEA7523277 KEYWORDS WGS. SOURCE Pyrgus malvae (grizzled skipper) ORGANISM Pyrgus malvae Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Hesperioidea; Hesperiidae; Pyrginae; Pyrgus. REFERENCE 1 (bases 1 to 5) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (19-JUL-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Pyrgus malvae whole genome shotgun (WGS) project has the project accession CAJVQT000000000. This version of the project (01) has the accession number CAJVQT010000000, and consists of sequences CAJVQT010000001-CAJVQT010000005. The assembly ilPyrMalv3.1 is based on 69x PacBio data, 10X Genomics Chromium data, and Qiagen Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..5 /organism="Pyrgus malvae" /mol_type="genomic DNA" /db_xref="taxon:218760" WGS CAJVQT010000001-CAJVQT010000005 // LOCUS CAJVQR010000000 4 rc DNA linear INV 21-JUL-2021 DEFINITION Thymelicus sylvestris, whole genome shotgun sequencing project. ACCESSION CAJVQR000000000 VERSION CAJVQR000000000.1 DBLINK BioProject: PRJEB46433 BioSample: SAMEA7523279 KEYWORDS WGS. SOURCE Thymelicus sylvestris (small skipper) ORGANISM Thymelicus sylvestris Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Hesperioidea; Hesperiidae; Hesperiinae; Hesperiini; Thymelicus. REFERENCE 1 (bases 1 to 4) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (19-JUL-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Thymelicus sylvestris whole genome shotgun (WGS) project has the project accession CAJVQR000000000. This version of the project (01) has the accession number CAJVQR010000000, and consists of sequences CAJVQR010000001-CAJVQR010000004. The assembly ilThySylv1.1 is based on 40x PacBio data, 10X Genomics Chromium data, and Qiagen Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..4 /organism="Thymelicus sylvestris" /mol_type="genomic DNA" /db_xref="taxon:272628" WGS CAJVQR010000001-CAJVQR010000004 // LOCUS JADCQN020000000 6737 rc DNA linear VRT 15-JUL-2021 DEFINITION Chelonia mydas isolate rCheMyd1, whole genome shotgun sequencing project. ACCESSION JADCQN000000000 VERSION JADCQN000000000.2 DBLINK BioProject: PRJNA561942 BioSample: SAMN12612360 KEYWORDS WGS. SOURCE Chelonia mydas (Green sea turtle) ORGANISM Chelonia mydas Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia. REFERENCE 1 (bases 1 to 6737) AUTHORS Mazzoni,C., Carrasco-Valenzuela,T., Uliano-Silva,M., Winkler,S., Formenti,G., Mountcastle,J., Haase,B., Pelan,S., Sims,Y., Tikochinski,Y., Howe,K., Fedrigo,O., Myers,G., Tracey,A. and Jarvis,E.D. TITLE Chelonia mydas (Green sea turtle) genome, rCheMyd1, alternate haplotype, v2 JOURNAL Unpublished REFERENCE 2 (bases 1 to 6737) AUTHORS Mazzoni,C., Carrasco-Valenzuela,T., Uliano-Silva,M., Winkler,S., Formenti,G., Mountcastle,J., Haase,B., Pelan,S., Sims,Y., Tikochinski,Y., Howe,K., Fedrigo,O., Myers,G. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (19-OCT-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA REFERENCE 3 (bases 1 to 6737) AUTHORS Mazzoni,C., Carrasco-Valenzuela,T., Uliano-Silva,M., Winkler,S., Formenti,G., Mountcastle,J., Haase,B., Pelan,S., Sims,Y., Tikochinski,Y., Howe,K., Fedrigo,O., Myers,G., Tracey,A. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (28-JUN-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT On Jul 15, 2021 this sequence version replaced JADCQN000000000.1. The Chelonia mydas whole genome shotgun (WGS) project has the project accession JADCQN000000000. This version of the project (02) has the accession number JADCQN020000000, and consists of sequences JADCQN020000001-JADCQN020006737. ##Genome-Assembly-Data-START## Assembly Date :: 28-MAY-2021 Assembly Method :: FALCON 1.3.0 v. 2018.31.08-03.06; FALCON-Unzip v. 1.2.0 6.0.0.47841; purge_dups v. github ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b; Scaff10x v. 4.1.0; Bionano Solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow polishing and gap filling v. SMRTLink7.0.1; Longranger Align v. 2.2.2; freebayes v. 1.3.1; gEVAL manual curation v. 2021-05-28; VGP assembly pipeline v. 1.6 Assembly Name :: rCheMyd1.alt.v2 Diploid :: Alternate Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 60.0x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..6737 /organism="Chelonia mydas" /mol_type="genomic DNA" /isolate="rCheMyd1" /db_xref="taxon:8469" /sex="male" /tissue_type="blood" /dev_stage="adult" /country="Israel: Mediterranean Sea" /lat_lon="31.814194 N 34.753376 E" /collection_date="2018-06-04" /collected_by="Yaron Tikochinski" WGS JADCQN020000001-JADCQN020006737 // LOCUS JADCQM020000000 92 rc DNA linear VRT 15-JUL-2021 DEFINITION Chelonia mydas isolate rCheMyd1, whole genome shotgun sequencing project. ACCESSION JADCQM000000000 VERSION JADCQM000000000.2 DBLINK BioProject: PRJNA561941 BioSample: SAMN12612360 KEYWORDS WGS. SOURCE Chelonia mydas (Green sea turtle) ORGANISM Chelonia mydas Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia. REFERENCE 1 (bases 1 to 92) AUTHORS Mazzoni,C., Carrasco-Valenzuela,T., Uliano-Silva,M., Winkler,S., Formenti,G., Mountcastle,J., Haase,B., Pelan,S., Sims,Y., Tikochinski,Y., Howe,K., Fedrigo,O., Myers,G., Tracey,A. and Jarvis,E.D. TITLE Chelonia mydas (Green sea turtle) genome, rCheMyd1, primary haplotype, v2 JOURNAL Unpublished REFERENCE 2 (bases 1 to 92) AUTHORS Mazzoni,C., Carrasco-Valenzuela,T., Uliano-Silva,M., Winkler,S., Formenti,G., Mountcastle,J., Haase,B., Pelan,S., Sims,Y., Tikochinski,Y., Howe,K., Fedrigo,O., Myers,G. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (19-OCT-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA REFERENCE 3 (bases 1 to 92) AUTHORS Mazzoni,C., Carrasco-Valenzuela,T., Uliano-Silva,M., Winkler,S., Formenti,G., Mountcastle,J., Haase,B., Pelan,S., Sims,Y., Tikochinski,Y., Howe,K., Fedrigo,O., Myers,G., Tracey,A. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (28-JUN-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT On Jul 14, 2021 this sequence version replaced JADCQM000000000.1. The Chelonia mydas whole genome shotgun (WGS) project has the project accession JADCQM000000000. This version of the project (02) has the accession number JADCQM020000000, and consists of sequences JADCQM020000001-JADCQM020000092. ##Genome-Assembly-Data-START## Assembly Date :: 28-MAY-2021 Assembly Method :: FALCON 1.3.0 v. 2018.31.08-03.06; FALCON-Unzip v. 1.2.0 6.0.0.47841; purge_dups v. github ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b; Scaff10x v. 4.1.0; Bionano Solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow polishing and gap filling v. SMRTLink7.0.1; Longranger Align v. 2.2.2; freebayes v. 1.3.1; gEVAL manual curation v. 2021-05-28; VGP assembly pipeline v. 1.6 Assembly Name :: rCheMyd1.pri.v2 Diploid :: Principal Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 60.0x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..92 /organism="Chelonia mydas" /mol_type="genomic DNA" /isolate="rCheMyd1" /db_xref="taxon:8469" /sex="male" /tissue_type="blood" /dev_stage="adult" /country="Israel: Mediterranean Sea" /lat_lon="31.814194 N 34.753376 E" /collection_date="2018-06-04" /collected_by="Yaron Tikochinski" WGS JADCQM020000001-JADCQM020000092 WGS_SCAFLD CM026898-CM026925 // LOCUS CAADHW020000000 17082 rc DNA linear VRT 06-JUL-2021 DEFINITION Erpetoichthys calabaricus, whole genome shotgun sequencing project. ACCESSION CAADHW000000000 VERSION CAADHW000000000.2 DBLINK BioProject: PRJEB31582 BioSample: SAMEA104026374 KEYWORDS WGS. SOURCE Erpetoichthys calabaricus (reedfish) ORGANISM Erpetoichthys calabaricus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Polypteriformes; Polypteridae; Erpetoichthys. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (06-MAR-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 17082) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (30-JUN-2021) SC, Wellcome Sanger Institute, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT On Jul 7, 2021 this sequence version replaced CAADHW000000000.1. The Erpetoichthys calabaricus whole genome shotgun (WGS) project has the project accession CAADHW000000000. This version of the project (02) has the accession number CAADHW020000000, and consists of sequences CAADHW020000001-CAADHW020017082. The assembly fErpCal1.3 is based on 58x PacBio data, 31x 10X Genomics Chromium data, and 35x Arima Hi-C data generated at the Wellcome Sanger Institute, as well as BioNano Saphyr DLE data generated at the Rockefeller University Vertebrate Genome Laboratory. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig separation with purge_dups, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding with Solve, Hi-C based scaffolding with SALSA2, Arrow polishing using Merfin, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. The mitochondrial assembly was produced at The Rockefeller University using mitoVGP. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. The GC profile of chromosome 11 is very unusual when compared with the other chromosomes. FEATURES Location/Qualifiers source 1..17082 /organism="Erpetoichthys calabaricus" /mol_type="genomic DNA" /db_xref="taxon:27687" WGS CAADHW020000001-CAADHW020017082 // LOCUS CAJVBA010000000 4021 rc DNA linear MAM 06-JUL-2021 DEFINITION Cervus elaphus, whole genome shotgun sequencing project. ACCESSION CAJVBA000000000 VERSION CAJVBA000000000.1 DBLINK BioProject: PRJEB45837 BioSample: SAMEA7523520 KEYWORDS WGS. SOURCE Cervus elaphus (red deer) ORGANISM Cervus elaphus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Cervidae; Cervinae; Cervus. REFERENCE 1 (bases 1 to 4021) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (21-JUN-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Cervus elaphus whole genome shotgun (WGS) project has the project accession CAJVBA000000000. This version of the project (01) has the accession number CAJVBA010000000, and consists of sequences CAJVBA010000001-CAJVBA010004021. The assembly mCerEla1.1 is based on 30x PacBio data, 10X Genomics Chromium data, and Arima2 Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds are named by synteny based on Cervus elaphus (Red deer) GCA_002197005.1. FEATURES Location/Qualifiers source 1..4021 /organism="Cervus elaphus" /mol_type="genomic DNA" /db_xref="taxon:9860" WGS CAJVBA010000001-CAJVBA010004021 // LOCUS CAJVAZ010000000 7136 rc DNA linear INV 06-JUL-2021 DEFINITION Ocypus olens, whole genome shotgun sequencing project. ACCESSION CAJVAZ000000000 VERSION CAJVAZ000000000.1 DBLINK BioProject: PRJEB45834 BioSample: SAMEA7520211 KEYWORDS WGS. SOURCE Ocypus olens ORGANISM Ocypus olens Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Staphyliniformia; Staphylinidae; Staphylininae group; Staphylininae; Staphylinini; Ocypus. REFERENCE 1 (bases 1 to 7136) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (21-JUN-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Ocypus olens whole genome shotgun (WGS) project has the project accession CAJVAZ000000000. This version of the project (01) has the accession number CAJVAZ010000000, and consists of sequences CAJVAZ010000001-CAJVAZ010007136. The assembly icOcyOlen1.1 is based on 40x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Order and orientation of scaffolds in the centromeric regions is less certain than in the rest of the assembly. FEATURES Location/Qualifiers source 1..7136 /organism="Ocypus olens" /mol_type="genomic DNA" /db_xref="taxon:662956" WGS CAJVAZ010000001-CAJVAZ010007136 // LOCUS CAJUUQ010000000 58 rc DNA linear INV 06-JUL-2021 DEFINITION Mythimna ferrago, whole genome shotgun sequencing project. ACCESSION CAJUUQ000000000 VERSION CAJUUQ000000000.1 DBLINK BioProject: PRJEB45326 BioSample: SAMEA7701536 KEYWORDS WGS. SOURCE Mythimna ferrago ORGANISM Mythimna ferrago Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Hadeninae; Mythimna. REFERENCE 1 (bases 1 to 58) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-MAY-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Mythimna ferrago whole genome shotgun (WGS) project has the project accession CAJUUQ000000000. This version of the project (01) has the accession number CAJUUQ010000000, and consists of sequences CAJUUQ010000001-CAJUUQ010000058. The assembly ilMytFerr1.1 is based on 31x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..58 /organism="Mythimna ferrago" /mol_type="genomic DNA" /db_xref="taxon:997540" WGS CAJUUQ010000001-CAJUUQ010000058 // LOCUS CAJVCN010000000 3263 rc DNA linear INV 06-JUL-2021 DEFINITION Xanthogramma pedissequum, whole genome shotgun sequencing project. ACCESSION CAJVCN000000000 VERSION CAJVCN000000000.1 DBLINK BioProject: PRJEB45688 BioSample: SAMEA7520951 KEYWORDS WGS. SOURCE Xanthogramma pedissequum ORGANISM Xanthogramma pedissequum Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Syrphoidea; Syrphidae; Syrphinae; Syrphini; Xanthogramma. REFERENCE 1 (bases 1 to 3263) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (29-JUN-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Xanthogramma pedissequum whole genome shotgun (WGS) project has the project accession CAJVCN000000000. This version of the project (01) has the accession number CAJVCN010000000, and consists of sequences CAJVCN010000001-CAJVCN010003263. The assembly idXanPedi1.1 is based on 36x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Chromosome 1 contains a large, heterochromatic region of low confidence at approximately 113.44-242.17Mb. This block consists of numerous scaffolds with high repeat content that can be localised to chromosome 1 but their order and orientation is unsure. Hi-C data indicates that the region 32.39-38.38Mb on Chromosome X has a strong association with scaffolds labelled as Chromosome Y and Y_unloc. This highly repetitive region is likely misassembled containing data from both X and Y that was unable to be separated due to the limitations of current technologies. FEATURES Location/Qualifiers source 1..3263 /organism="Xanthogramma pedissequum" /mol_type="genomic DNA" /db_xref="taxon:414876" WGS CAJVCN010000001-CAJVCN010003263 // LOCUS CAJUZE010000000 915 rc DNA linear INV 06-JUL-2021 DEFINITION Ypsolopha scabrella, whole genome shotgun sequencing project. ACCESSION CAJUZE000000000 VERSION CAJUZE000000000.1 DBLINK BioProject: PRJEB45690 BioSample: SAMEA7701504 KEYWORDS WGS. SOURCE Ypsolopha scabrella ORGANISM Ypsolopha scabrella Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Yponomeutoidea; Ypsolophidae; Ypsolopha. REFERENCE 1 (bases 1 to 915) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (14-JUN-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Ypsolopha scabrella whole genome shotgun (WGS) project has the project accession CAJUZE000000000. This version of the project (01) has the accession number CAJUZE010000000, and consists of sequences CAJUZE010000001-CAJUZE010000915. The assembly ilYpsScab1.1 is based on 17x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..915 /organism="Ypsolopha scabrella" /mol_type="genomic DNA" /db_xref="taxon:1870435" WGS CAJUZE010000001-CAJUZE010000915 // LOCUS CAJUUP010000000 1778 rc DNA linear VRT 06-JUL-2021 DEFINITION Taurulus bubalis, whole genome shotgun sequencing project. ACCESSION CAJUUP000000000 VERSION CAJUUP000000000.1 DBLINK BioProject: PRJEB45316 BioSample: SAMEA7522994 KEYWORDS WGS. SOURCE Taurulus bubalis ORGANISM Taurulus bubalis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Cottales; Cottidae; Taurulus. REFERENCE 1 (bases 1 to 1778) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-MAY-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Taurulus bubalis whole genome shotgun (WGS) project has the project accession CAJUUP000000000. This version of the project (01) has the accession number CAJUUP010000000, and consists of sequences CAJUUP010000001-CAJUUP010001778. The assembly fTauBub2.1 is based on 38x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..1778 /organism="Taurulus bubalis" /mol_type="genomic DNA" /db_xref="taxon:61643" WGS CAJUUP010000001-CAJUUP010001778 // LOCUS CAJUUJ010000000 433 rc DNA linear INV 06-JUL-2021 DEFINITION Tinea semifulvella, whole genome shotgun sequencing project. ACCESSION CAJUUJ000000000 VERSION CAJUUJ000000000.1 DBLINK BioProject: PRJEB45333 BioSample: SAMEA7520371 KEYWORDS WGS. SOURCE Tinea semifulvella ORGANISM Tinea semifulvella Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Tineoidea; Tineidae; Tineinae; Tinea. REFERENCE 1 (bases 1 to 433) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-MAY-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Tinea semifulvella whole genome shotgun (WGS) project has the project accession CAJUUJ000000000. This version of the project (01) has the accession number CAJUUJ010000000, and consists of sequences CAJUUJ010000001-CAJUUJ010000433. The assembly ilTinSemi1.1 is based on 45x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..433 /organism="Tinea semifulvella" /mol_type="genomic DNA" /db_xref="taxon:1101063" WGS CAJUUJ010000001-CAJUUJ010000433 // LOCUS CAJUUO010000000 400 rc DNA linear INV 06-JUL-2021 DEFINITION Chrysoteuchia culmella, whole genome shotgun sequencing project. ACCESSION CAJUUO000000000 VERSION CAJUUO000000000.1 DBLINK BioProject: PRJEB45322 BioSample: SAMEA7701502 KEYWORDS WGS. SOURCE Chrysoteuchia culmella ORGANISM Chrysoteuchia culmella Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pyraloidea; Crambidae; Crambinae; Chrysoteuchia. REFERENCE 1 (bases 1 to 400) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-MAY-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Chrysoteuchia culmella whole genome shotgun (WGS) project has the project accession CAJUUO000000000. This version of the project (01) has the accession number CAJUUO010000000, and consists of sequences CAJUUO010000001-CAJUUO010000400. The assembly ilChrCulm1.1 is based on 43x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..400 /organism="Chrysoteuchia culmella" /mol_type="genomic DNA" /db_xref="taxon:1594250" WGS CAJUUO010000001-CAJUUO010000400 // LOCUS CAJVCF010000000 221 rc DNA linear INV 06-JUL-2021 DEFINITION Amphipyra berbera, whole genome shotgun sequencing project. ACCESSION CAJVCF000000000 VERSION CAJVCF000000000.1 DBLINK BioProject: PRJEB45916 BioSample: SAMEA7701493 KEYWORDS WGS. SOURCE Amphipyra berbera ORGANISM Amphipyra berbera Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Amphipyra. REFERENCE 1 (bases 1 to 221) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (25-JUN-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Amphipyra berbera whole genome shotgun (WGS) project has the project accession CAJVCF000000000. This version of the project (01) has the accession number CAJVCF010000000, and consists of sequences CAJVCF010000001-CAJVCF010000221. The assembly ilAmpBerb1.1 is based on 41x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..221 /organism="Amphipyra berbera" /mol_type="genomic DNA" /db_xref="taxon:987877" WGS CAJVCF010000001-CAJVCF010000221 // LOCUS CAJUYA010000000 1130 rc DNA linear INV 06-JUL-2021 DEFINITION Cydia splendana, whole genome shotgun sequencing project. ACCESSION CAJUYA000000000 VERSION CAJUYA000000000.1 DBLINK BioProject: PRJEB45452 BioSample: SAMEA7701547 KEYWORDS WGS. SOURCE Cydia splendana ORGANISM Cydia splendana Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Tortricoidea; Tortricidae; Olethreutinae; Grapholitini; Cydia. REFERENCE 1 (bases 1 to 1130) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (04-JUN-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Cydia splendana whole genome shotgun (WGS) project has the project accession CAJUYA000000000. This version of the project (01) has the accession number CAJUYA010000000, and consists of sequences CAJUYA010000001-CAJUYA010001130. The assembly ilCydSple1.1 is based on 36x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..1130 /organism="Cydia splendana" /mol_type="genomic DNA" /db_xref="taxon:1100963" WGS CAJUYA010000001-CAJUYA010001130 // LOCUS CAJUUN010000000 1475 rc DNA linear INV 06-JUL-2021 DEFINITION Malachius bipustulatus, whole genome shotgun sequencing project. ACCESSION CAJUUN000000000 VERSION CAJUUN000000000.1 DBLINK BioProject: PRJEB45314 BioSample: SAMEA7520537 KEYWORDS WGS. SOURCE Malachius bipustulatus ORGANISM Malachius bipustulatus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Melyridae; Malachiinae; Malachius. REFERENCE 1 (bases 1 to 1475) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-MAY-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Malachius bipustulatus whole genome shotgun (WGS) project has the project accession CAJUUN000000000. This version of the project (01) has the accession number CAJUUN010000000, and consists of sequences CAJUUN010000001-CAJUUN010001475. The assembly icMalBipu1.1 is based on 32x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Due to ambiguous HiC signal and lack of additional evidence to support accurate placement several scaffolds that associate with Chromosome X by hic data have been submitted as unlocalised. These components are labelled SUPER_X_unloc_1-4. FEATURES Location/Qualifiers source 1..1475 /organism="Malachius bipustulatus" /mol_type="genomic DNA" /db_xref="taxon:295700" WGS CAJUUN010000001-CAJUUN010001475 // LOCUS CAJUUL010000000 839 rc DNA linear INV 06-JUL-2021 DEFINITION Noctua janthe, whole genome shotgun sequencing project. ACCESSION CAJUUL000000000 VERSION CAJUUL000000000.1 DBLINK BioProject: PRJEB45328 BioSample: SAMEA7701537 KEYWORDS WGS. SOURCE Noctua janthe ORGANISM Noctua janthe Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Noctuinae; Noctuini; Noctua. REFERENCE 1 (bases 1 to 839) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-MAY-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Noctua janthe whole genome shotgun (WGS) project has the project accession CAJUUL000000000. This version of the project (01) has the accession number CAJUUL010000000, and consists of sequences CAJUUL010000001-CAJUUL010000839. The assembly ilNocJant1.1 is based on 48x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..839 /organism="Noctua janthe" /mol_type="genomic DNA" /db_xref="taxon:987995" WGS CAJUUL010000001-CAJUUL010000839 // LOCUS CAJUUT010000000 826 rc DNA linear INV 06-JUL-2021 DEFINITION Ennomos quercinarius, whole genome shotgun sequencing project. ACCESSION CAJUUT000000000 VERSION CAJUUT000000000.1 DBLINK BioProject: PRJEB45325 BioSample: SAMEA7701560 KEYWORDS WGS. SOURCE Ennomos quercinarius ORGANISM Ennomos quercinarius Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Ennominae; Ennomos. REFERENCE 1 (bases 1 to 826) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-MAY-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Ennomos quercinarius whole genome shotgun (WGS) project has the project accession CAJUUT000000000. This version of the project (01) has the accession number CAJUUT010000000, and consists of sequences CAJUUT010000001-CAJUUT010000826. The assembly ilEnnQuei1.1 is based on 47x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..826 /organism="Ennomos quercinarius" /mol_type="genomic DNA" /db_xref="taxon:875883" WGS CAJUUT010000001-CAJUUT010000826 // LOCUS CAJUXQ010000000 44 rc DNA linear INV 06-JUL-2021 DEFINITION Acronicta aceris, whole genome shotgun sequencing project. ACCESSION CAJUXQ000000000 VERSION CAJUXQ000000000.1 DBLINK BioProject: PRJEB45451 BioSample: SAMEA7701532 KEYWORDS WGS. SOURCE Acronicta aceris ORGANISM Acronicta aceris Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Acronictinae; Acronicta. REFERENCE 1 (bases 1 to 44) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (04-JUN-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Acronicta aceris whole genome shotgun (WGS) project has the project accession CAJUXQ000000000. This version of the project (01) has the accession number CAJUXQ010000000, and consists of sequences CAJUXQ010000001-CAJUXQ010000044. The assembly ilAcrAcer1.1 is based on 39x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..44 /organism="Acronicta aceris" /mol_type="genomic DNA" /db_xref="taxon:987859" WGS CAJUXQ010000001-CAJUXQ010000044 // LOCUS CAJUUE010000000 430 rc DNA linear INV 06-JUL-2021 DEFINITION Parapoynx stratiotata, whole genome shotgun sequencing project. ACCESSION CAJUUE000000000 VERSION CAJUUE000000000.1 DBLINK BioProject: PRJEB45331 BioSample: SAMEA7519920 KEYWORDS WGS. SOURCE Parapoynx stratiotata ORGANISM Parapoynx stratiotata Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pyraloidea; Crambidae; Nymphulinae; Parapoynx. REFERENCE 1 (bases 1 to 430) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-MAY-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Parapoynx stratiotata whole genome shotgun (WGS) project has the project accession CAJUUE000000000. This version of the project (01) has the accession number CAJUUE010000000, and consists of sequences CAJUUE010000001-CAJUUE010000430. The assembly ilParStra1.1 is based on 26x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..430 /organism="Parapoynx stratiotata" /mol_type="genomic DNA" /db_xref="taxon:1594321" WGS CAJUUE010000001-CAJUUE010000430 // LOCUS CAJUUI010000000 2494 rc DNA linear INV 06-JUL-2021 DEFINITION Bembecia ichneumoniformis, whole genome shotgun sequencing project. ACCESSION CAJUUI000000000 VERSION CAJUUI000000000.1 DBLINK BioProject: PRJEB45318 BioSample: SAMEA7701282 KEYWORDS WGS. SOURCE Bembecia ichneumoniformis (six-belted clearwing) ORGANISM Bembecia ichneumoniformis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Sesioidea; Sesiidae; Sesiinae; Synanthedonini; Bembecia. REFERENCE 1 (bases 1 to 2494) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-MAY-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Bembecia ichneumoniformis whole genome shotgun (WGS) project has the project accession CAJUUI000000000. This version of the project (01) has the accession number CAJUUI010000000, and consists of sequences CAJUUI010000001-CAJUUI010002494. The assembly ilBemIchn1.1 is based on 30x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..2494 /organism="Bembecia ichneumoniformis" /mol_type="genomic DNA" /db_xref="taxon:301037" WGS CAJUUI010000001-CAJUUI010002494 // LOCUS CAJUUC010000000 57 rc DNA linear INV 06-JUL-2021 DEFINITION Carcina quercana, whole genome shotgun sequencing project. ACCESSION CAJUUC000000000 VERSION CAJUUC000000000.1 DBLINK BioProject: PRJEB45320 BioSample: SAMEA7519850 KEYWORDS WGS. SOURCE Carcina quercana ORGANISM Carcina quercana Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Peleopodidae; Carcina. REFERENCE 1 (bases 1 to 57) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-MAY-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Carcina quercana whole genome shotgun (WGS) project has the project accession CAJUUC000000000. This version of the project (01) has the accession number CAJUUC010000000, and consists of sequences CAJUUC010000001-CAJUUC010000057. The assembly ilCarQuer1.1 is based on 57x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..57 /organism="Carcina quercana" /mol_type="genomic DNA" /db_xref="taxon:116121" WGS CAJUUC010000001-CAJUUC010000057 // LOCUS CAJUXO010000000 710 rc DNA linear INV 06-JUL-2021 DEFINITION Cerceris rybyensis, whole genome shotgun sequencing project. ACCESSION CAJUXO000000000 VERSION CAJUXO000000000.1 DBLINK BioProject: PRJEB45454 BioSample: SAMEA7701329 KEYWORDS WGS. SOURCE Cerceris rybyensis ORGANISM Cerceris rybyensis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Spheciformes; Crabronidae; Philanthinae; Cercerini; Cerceris. REFERENCE 1 (bases 1 to 710) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (04-JUN-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Cerceris rybyensis whole genome shotgun (WGS) project has the project accession CAJUXO000000000. This version of the project (01) has the accession number CAJUXO010000000, and consists of sequences CAJUXO010000001-CAJUXO010000710. The assembly iyCerRyby1.1 is based on 58x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..710 /organism="Cerceris rybyensis" /mol_type="genomic DNA" /db_xref="taxon:1167272" WGS CAJUXO010000001-CAJUXO010000710 // LOCUS CAJUZK010000000 452 rc DNA linear INV 06-JUL-2021 DEFINITION Lineus longissimus, whole genome shotgun sequencing project. ACCESSION CAJUZK000000000 VERSION CAJUZK000000000.1 DBLINK BioProject: PRJEB45697 BioSample: SAMEA7522833 KEYWORDS WGS. SOURCE Lineus longissimus ORGANISM Lineus longissimus Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Nemertea; Pilidiophora; Heteronemertea; Lineidae; Lineus. REFERENCE 1 (bases 1 to 452) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (14-JUN-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Lineus longissimus whole genome shotgun (WGS) project has the project accession CAJUZK000000000. This version of the project (01) has the accession number CAJUZK010000000, and consists of sequences CAJUZK010000001-CAJUZK010000452. The assembly tnLinLong1.1 is based on 79x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Chromosome 5 contains a large inversion between sister chromatids at approximately 11.1-15.4Mb. FEATURES Location/Qualifiers source 1..452 /organism="Lineus longissimus" /mol_type="genomic DNA" /db_xref="taxon:88925" WGS CAJUZK010000001-CAJUZK010000452 // LOCUS CAJUZC010000000 1048 rc DNA linear INV 06-JUL-2021 DEFINITION Adalia bipunctata, whole genome shotgun sequencing project. ACCESSION CAJUZC000000000 VERSION CAJUZC000000000.1 DBLINK BioProject: PRJEB45687 BioSample: SAMEA9089055 KEYWORDS WGS. SOURCE Adalia bipunctata (two-spotted ladybird beetle) ORGANISM Adalia bipunctata Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Coccinellidae; Coccinellinae; Coccinellini; Adalia. REFERENCE 1 (bases 1 to 1048) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (14-JUN-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Adalia bipunctata whole genome shotgun (WGS) project has the project accession CAJUZC000000000. This version of the project (01) has the accession number CAJUZC010000000, and consists of sequences CAJUZC010000001-CAJUZC010001048. The assembly icAdaBipu1.1 is based on 48x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..1048 /organism="Adalia bipunctata" /mol_type="genomic DNA" /db_xref="taxon:7084" WGS CAJUZC010000001-CAJUZC010001048 // LOCUS CAJVCD010000000 325 rc DNA linear INV 06-JUL-2021 DEFINITION Bibio marci, whole genome shotgun sequencing project. ACCESSION CAJVCD000000000 VERSION CAJVCD000000000.1 DBLINK BioProject: PRJEB45914 BioSample: SAMEA7524263 KEYWORDS WGS. SOURCE Bibio marci (St. Mark's fly) ORGANISM Bibio marci Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Bibionoidea; Bibionidae; Bibio. REFERENCE 1 (bases 1 to 325) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (25-JUN-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Bibio marci whole genome shotgun (WGS) project has the project accession CAJVCD000000000. This version of the project (01) has the accession number CAJVCD010000000, and consists of sequences CAJVCD010000001-CAJVCD010000325. The assembly idBibMarc1.1 is based on 53x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Unknown sex chromosome system, no Y found. X assembly has good contiguity and good HiC linking across scaffold gaps. FEATURES Location/Qualifiers source 1..325 /organism="Bibio marci" /mol_type="genomic DNA" /db_xref="taxon:189979" WGS CAJVCD010000001-CAJVCD010000325 // LOCUS CAJUXM010000000 920 rc DNA linear INV 06-JUL-2021 DEFINITION Nysson spinosus, whole genome shotgun sequencing project. ACCESSION CAJUXM000000000 VERSION CAJUXM000000000.1 DBLINK BioProject: PRJEB45458 BioSample: SAMEA7520702 KEYWORDS WGS. SOURCE Nysson spinosus ORGANISM Nysson spinosus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Spheciformes; Crabronidae; Bembicinae; Nyssonini; Nysson. REFERENCE 1 (bases 1 to 920) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (04-JUN-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Nysson spinosus whole genome shotgun (WGS) project has the project accession CAJUXM000000000. This version of the project (01) has the accession number CAJUXM010000000, and consists of sequences CAJUXM010000001-CAJUXM010000920. The assembly iyNysSpin1.1 is based on 54x PacBio data, 10X Genomics Chromium data, and Arima2 Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Some uncertainty over chromosome assignment. From Hi-C evidence it appears that the 26 euchromatic blocks represent 26 individual chromosomes with a large amount of heterochromatic sequence unplaceable. FEATURES Location/Qualifiers source 1..920 /organism="Nysson spinosus" /mol_type="genomic DNA" /db_xref="taxon:2495127" WGS CAJUXM010000001-CAJUXM010000920 // LOCUS CAJUYZ010000000 533 rc DNA linear INV 06-JUL-2021 DEFINITION Bombus terrestris, whole genome shotgun sequencing project. ACCESSION CAJUYZ000000000 VERSION CAJUYZ000000000.1 DBLINK BioProject: PRJEB45695 BioSample: SAMEA7520487 KEYWORDS WGS. SOURCE Bombus terrestris (buff-tailed bumblebee) ORGANISM Bombus terrestris Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Apidae; Bombus; Bombus. REFERENCE 1 (bases 1 to 533) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (14-JUN-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Bombus terrestris whole genome shotgun (WGS) project has the project accession CAJUYZ000000000. This version of the project (01) has the accession number CAJUYZ010000000, and consists of sequences CAJUYZ010000001-CAJUYZ010000533. The assembly iyBomTerr1.1 is based on 57x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds are named by synteny based on Bombus terrestris (buff-tailed bumblebee) GCA_000214255.1. Many unplaced scaffolds are composed entirely of a 10mer repeat which we note occurs in other Bombus assemblies. FEATURES Location/Qualifiers source 1..533 /organism="Bombus terrestris" /mol_type="genomic DNA" /db_xref="taxon:30195" WGS CAJUYZ010000001-CAJUYZ010000533 // LOCUS CAJUZB010000000 985 rc DNA linear INV 06-JUL-2021 DEFINITION Andrena haemorrhoa, whole genome shotgun sequencing project. ACCESSION CAJUZB000000000 VERSION CAJUZB000000000.1 DBLINK BioProject: PRJEB45693 BioSample: SAMEA7520535 KEYWORDS WGS. SOURCE Andrena haemorrhoa ORGANISM Andrena haemorrhoa Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Andrenidae; Andreninae; Andrena; Taeniandrena. REFERENCE 1 (bases 1 to 985) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (14-JUN-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Andrena haemorrhoa whole genome shotgun (WGS) project has the project accession CAJUZB000000000. This version of the project (01) has the accession number CAJUZB010000000, and consists of sequences CAJUZB010000001-CAJUZB010000985. The assembly iyAndHaem1.1 is based on 77x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..985 /organism="Andrena haemorrhoa" /mol_type="genomic DNA" /db_xref="taxon:444401" WGS CAJUZB010000001-CAJUZB010000985 // LOCUS CAJUXN010000000 543 rc DNA linear INV 06-JUL-2021 DEFINITION Ectemnius continuus, whole genome shotgun sequencing project. ACCESSION CAJUXN000000000 VERSION CAJUXN000000000.1 DBLINK BioProject: PRJEB45457 BioSample: SAMEA7520490 KEYWORDS WGS. SOURCE Ectemnius continuus ORGANISM Ectemnius continuus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Spheciformes; Crabronidae; Crabroninae; Crabronini; Crabronina; Ectemnius. REFERENCE 1 (bases 1 to 543) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (04-JUN-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Ectemnius continuus whole genome shotgun (WGS) project has the project accession CAJUXN000000000. This version of the project (01) has the accession number CAJUXN010000000, and consists of sequences CAJUXN010000001-CAJUXN010000543. The assembly iyEctCont1.1 is based on 92x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..543 /organism="Ectemnius continuus" /mol_type="genomic DNA" /db_xref="taxon:1126389" WGS CAJUXN010000001-CAJUXN010000543 // LOCUS CAJUUS010000000 4397 rc DNA linear INV 06-JUL-2021 DEFINITION Vespa crabro, whole genome shotgun sequencing project. ACCESSION CAJUUS000000000 VERSION CAJUUS000000000.1 DBLINK BioProject: PRJEB45334 BioSample: SAMEA7520500 KEYWORDS WGS. SOURCE Vespa crabro (European hornet) ORGANISM Vespa crabro Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Vespoidea; Vespidae; Vespinae; Vespa. REFERENCE 1 (bases 1 to 4397) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-MAY-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Vespa crabro whole genome shotgun (WGS) project has the project accession CAJUUS000000000. This version of the project (01) has the accession number CAJUUS010000000, and consists of sequences CAJUUS010000001-CAJUUS010004397. The assembly iyVesCrab1.1 is based on 70x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..4397 /organism="Vespa crabro" /mol_type="genomic DNA" /db_xref="taxon:7445" WGS CAJUUS010000001-CAJUUS010004397 // LOCUS CAJVBL010000000 110 rc DNA linear MAM 06-JUL-2021 DEFINITION Cervus elaphus, whole genome shotgun sequencing project. ACCESSION CAJVBL000000000 VERSION CAJVBL000000000.1 DBLINK BioProject: PRJEB45838 BioSample: SAMEA7523520 KEYWORDS WGS. SOURCE Cervus elaphus (red deer) ORGANISM Cervus elaphus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Cervidae; Cervinae; Cervus. REFERENCE 1 (bases 1 to 110) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (21-JUN-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Cervus elaphus whole genome shotgun (WGS) project has the project accession CAJVBL000000000. This version of the project (01) has the accession number CAJVBL010000000, and consists of sequences CAJVBL010000001-CAJVBL010000110. The assembly mCerEla1.1 is based on 30x PacBio data, 10X Genomics Chromium data, and Arima2 Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds are named by synteny based on Cervus elaphus (Red deer) GCA_002197005.1. FEATURES Location/Qualifiers source 1..110 /organism="Cervus elaphus" /mol_type="genomic DNA" /db_xref="taxon:9860" WGS CAJVBL010000001-CAJVBL010000110 // LOCUS CAJUYC010000000 132 rc DNA linear INV 06-JUL-2021 DEFINITION Nysson spinosus, whole genome shotgun sequencing project. ACCESSION CAJUYC000000000 VERSION CAJUYC000000000.1 DBLINK BioProject: PRJEB45459 BioSample: SAMEA7520702 KEYWORDS WGS. SOURCE Nysson spinosus ORGANISM Nysson spinosus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Spheciformes; Crabronidae; Bembicinae; Nyssonini; Nysson. REFERENCE 1 (bases 1 to 132) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (04-JUN-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Nysson spinosus whole genome shotgun (WGS) project has the project accession CAJUYC000000000. This version of the project (01) has the accession number CAJUYC010000000, and consists of sequences CAJUYC010000001-CAJUYC010000132. The assembly iyNysSpin1.1 is based on 54x PacBio data, 10X Genomics Chromium data, and Arima2 Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Some uncertainty over chromosome assignment. From Hi-C evidence it appears that the 26 euchromatic blocks represent 26 individual chromosomes with a large amount of heterochromatic sequence unplaceable. FEATURES Location/Qualifiers source 1..132 /organism="Nysson spinosus" /mol_type="genomic DNA" /db_xref="taxon:2495127" WGS CAJUYC010000001-CAJUYC010000132 // LOCUS CAJUYY010000000 237 rc DNA linear INV 06-JUL-2021 DEFINITION Bombus terrestris, whole genome shotgun sequencing project. ACCESSION CAJUYY000000000 VERSION CAJUYY000000000.1 DBLINK BioProject: PRJEB45694 BioSample: SAMEA7520487 KEYWORDS WGS. SOURCE Bombus terrestris (buff-tailed bumblebee) ORGANISM Bombus terrestris Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Apidae; Bombus; Bombus. REFERENCE 1 (bases 1 to 237) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (14-JUN-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Bombus terrestris whole genome shotgun (WGS) project has the project accession CAJUYY000000000. This version of the project (01) has the accession number CAJUYY010000000, and consists of sequences CAJUYY010000001-CAJUYY010000237. The assembly iyBomTerr1.1 is based on 57x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds are named by synteny based on Bombus terrestris (buff-tailed bumblebee) GCA_000214255.1. Many unplaced scaffolds are composed entirely of a 10mer repeat which we note occurs in other Bombus assemblies. FEATURES Location/Qualifiers source 1..237 /organism="Bombus terrestris" /mol_type="genomic DNA" /db_xref="taxon:30195" WGS CAJUYY010000001-CAJUYY010000237 // LOCUS CAJUYE010000000 83 rc DNA linear INV 06-JUL-2021 DEFINITION Cydia splendana, whole genome shotgun sequencing project. ACCESSION CAJUYE000000000 VERSION CAJUYE000000000.1 DBLINK BioProject: PRJEB45453 BioSample: SAMEA7701547 KEYWORDS WGS. SOURCE Cydia splendana ORGANISM Cydia splendana Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Tortricoidea; Tortricidae; Olethreutinae; Grapholitini; Cydia. REFERENCE 1 (bases 1 to 83) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (04-JUN-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Cydia splendana whole genome shotgun (WGS) project has the project accession CAJUYE000000000. This version of the project (01) has the accession number CAJUYE010000000, and consists of sequences CAJUYE010000001-CAJUYE010000083. The assembly ilCydSple1.1 is based on 36x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..83 /organism="Cydia splendana" /mol_type="genomic DNA" /db_xref="taxon:1100963" WGS CAJUYE010000001-CAJUYE010000083 // LOCUS CAJUZA010000000 395 rc DNA linear INV 06-JUL-2021 DEFINITION Andrena haemorrhoa, whole genome shotgun sequencing project. ACCESSION CAJUZA000000000 VERSION CAJUZA000000000.1 DBLINK BioProject: PRJEB45692 BioSample: SAMEA7520535 KEYWORDS WGS. SOURCE Andrena haemorrhoa ORGANISM Andrena haemorrhoa Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Andrenidae; Andreninae; Andrena; Taeniandrena. REFERENCE 1 (bases 1 to 395) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (14-JUN-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Andrena haemorrhoa whole genome shotgun (WGS) project has the project accession CAJUZA000000000. This version of the project (01) has the accession number CAJUZA010000000, and consists of sequences CAJUZA010000001-CAJUZA010000395. The assembly iyAndHaem1.1 is based on 77x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..395 /organism="Andrena haemorrhoa" /mol_type="genomic DNA" /db_xref="taxon:444401" WGS CAJUZA010000001-CAJUZA010000395 // LOCUS CAJUXP010000000 657 rc DNA linear INV 06-JUL-2021 DEFINITION Cerceris rybyensis, whole genome shotgun sequencing project. ACCESSION CAJUXP000000000 VERSION CAJUXP000000000.1 DBLINK BioProject: PRJEB45455 BioSample: SAMEA7701329 KEYWORDS WGS. SOURCE Cerceris rybyensis ORGANISM Cerceris rybyensis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Spheciformes; Crabronidae; Philanthinae; Cercerini; Cerceris. REFERENCE 1 (bases 1 to 657) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (04-JUN-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Cerceris rybyensis whole genome shotgun (WGS) project has the project accession CAJUXP000000000. This version of the project (01) has the accession number CAJUXP010000000, and consists of sequences CAJUXP010000001-CAJUXP010000657. The assembly iyCerRyby1.1 is based on 58x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..657 /organism="Cerceris rybyensis" /mol_type="genomic DNA" /db_xref="taxon:1167272" WGS CAJUXP010000001-CAJUXP010000657 // LOCUS CAADRL030000000 150 rc DNA linear VRT 06-JUL-2021 DEFINITION Erpetoichthys calabaricus, whole genome shotgun sequencing project. ACCESSION CAADRL000000000 VERSION CAADRL000000000.3 DBLINK BioProject: PRJEB31579 BioSample: SAMEA104026374 KEYWORDS WGS. SOURCE Erpetoichthys calabaricus (reedfish) ORGANISM Erpetoichthys calabaricus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Polypteriformes; Polypteridae; Erpetoichthys. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (13-MAR-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 150) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (30-JUN-2021) SC, Wellcome Sanger Institute, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT On Jul 7, 2021 this sequence version replaced CAADRL000000000.2. The Erpetoichthys calabaricus whole genome shotgun (WGS) project has the project accession CAADRL000000000. This version of the project (03) has the accession number CAADRL030000000, and consists of sequences CAADRL030000001-CAADRL030000150. The assembly fErpCal1.3 is based on 58x PacBio data, 31x 10X Genomics Chromium data, and 35x Arima Hi-C data generated at the Wellcome Sanger Institute, as well as BioNano Saphyr DLE data generated at the Rockefeller University Vertebrate Genome Laboratory. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig separation with purge_dups, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding with Solve, Hi-C based scaffolding with SALSA2, Arrow polishing using Merfin, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. The mitochondrial assembly was produced at The Rockefeller University using mitoVGP. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. The GC profile of chromosome 11 is very unusual when compared with the other chromosomes. FEATURES Location/Qualifiers source 1..150 /organism="Erpetoichthys calabaricus" /mol_type="genomic DNA" /db_xref="taxon:27687" WGS CAADRL030000001-CAADRL030000150 // LOCUS CAJVCO010000000 478 rc DNA linear INV 06-JUL-2021 DEFINITION Xanthogramma pedissequum, whole genome shotgun sequencing project. ACCESSION CAJVCO000000000 VERSION CAJVCO000000000.1 DBLINK BioProject: PRJEB45689 BioSample: SAMEA7520951 KEYWORDS WGS. SOURCE Xanthogramma pedissequum ORGANISM Xanthogramma pedissequum Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Syrphoidea; Syrphidae; Syrphinae; Syrphini; Xanthogramma. REFERENCE 1 (bases 1 to 478) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (29-JUN-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Xanthogramma pedissequum whole genome shotgun (WGS) project has the project accession CAJVCO000000000. This version of the project (01) has the accession number CAJVCO010000000, and consists of sequences CAJVCO010000001-CAJVCO010000478. The assembly idXanPedi1.1 is based on 36x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Chromosome 1 contains a large, heterochromatic region of low confidence at approximately 113.44-242.17Mb. This block consists of numerous scaffolds with high repeat content that can be localised to chromosome 1 but their order and orientation is unsure. Hi-C data indicates that the region 32.39-38.38Mb on Chromosome X has a strong association with scaffolds labelled as Chromosome Y and Y_unloc. This highly repetitive region is likely misassembled containing data from both X and Y that was unable to be separated due to the limitations of current technologies. FEATURES Location/Qualifiers source 1..478 /organism="Xanthogramma pedissequum" /mol_type="genomic DNA" /db_xref="taxon:414876" WGS CAJVCO010000001-CAJVCO010000478 // LOCUS CAJUYD010000000 333 rc DNA linear INV 06-JUL-2021 DEFINITION Ectemnius continuus, whole genome shotgun sequencing project. ACCESSION CAJUYD000000000 VERSION CAJUYD000000000.1 DBLINK BioProject: PRJEB45456 BioSample: SAMEA7520490 KEYWORDS WGS. SOURCE Ectemnius continuus ORGANISM Ectemnius continuus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Spheciformes; Crabronidae; Crabroninae; Crabronini; Crabronina; Ectemnius. REFERENCE 1 (bases 1 to 333) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (04-JUN-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Ectemnius continuus whole genome shotgun (WGS) project has the project accession CAJUYD000000000. This version of the project (01) has the accession number CAJUYD010000000, and consists of sequences CAJUYD010000001-CAJUYD010000333. The assembly iyEctCont1.1 is based on 92x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..333 /organism="Ectemnius continuus" /mol_type="genomic DNA" /db_xref="taxon:1126389" WGS CAJUYD010000001-CAJUYD010000333 // LOCUS CAJUZD010000000 107 rc DNA linear INV 06-JUL-2021 DEFINITION Adalia bipunctata, whole genome shotgun sequencing project. ACCESSION CAJUZD000000000 VERSION CAJUZD000000000.1 DBLINK BioProject: PRJEB45686 BioSample: SAMEA9089055 KEYWORDS WGS. SOURCE Adalia bipunctata (two-spotted ladybird beetle) ORGANISM Adalia bipunctata Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Coccinellidae; Coccinellinae; Coccinellini; Adalia. REFERENCE 1 (bases 1 to 107) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (14-JUN-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Adalia bipunctata whole genome shotgun (WGS) project has the project accession CAJUZD000000000. This version of the project (01) has the accession number CAJUZD010000000, and consists of sequences CAJUZD010000001-CAJUZD010000107. The assembly icAdaBipu1.1 is based on 48x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..107 /organism="Adalia bipunctata" /mol_type="genomic DNA" /db_xref="taxon:7084" WGS CAJUZD010000001-CAJUZD010000107 // LOCUS CAJUUU010000000 14 rc DNA linear INV 06-JUL-2021 DEFINITION Mythimna ferrago, whole genome shotgun sequencing project. ACCESSION CAJUUU000000000 VERSION CAJUUU000000000.1 DBLINK BioProject: PRJEB45327 BioSample: SAMEA7701536 KEYWORDS WGS. SOURCE Mythimna ferrago ORGANISM Mythimna ferrago Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Hadeninae; Mythimna. REFERENCE 1 (bases 1 to 14) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-MAY-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Mythimna ferrago whole genome shotgun (WGS) project has the project accession CAJUUU000000000. This version of the project (01) has the accession number CAJUUU010000000, and consists of sequences CAJUUU010000001-CAJUUU010000014. The assembly ilMytFerr1.1 is based on 31x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..14 /organism="Mythimna ferrago" /mol_type="genomic DNA" /db_xref="taxon:997540" WGS CAJUUU010000001-CAJUUU010000014 // LOCUS CAJVAQ010000000 104 rc DNA linear INV 06-JUL-2021 DEFINITION Ectemnius lituratus, whole genome shotgun sequencing project. ACCESSION CAJVAQ000000000 VERSION CAJVAQ000000000.1 DBLINK BioProject: PRJEB45835 BioSample: SAMEA7520491 KEYWORDS WGS. SOURCE Ectemnius lituratus ORGANISM Ectemnius lituratus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Spheciformes; Crabronidae; Crabroninae; Crabronini; Crabronina; Ectemnius. REFERENCE 1 (bases 1 to 104) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (21-JUN-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Ectemnius lituratus whole genome shotgun (WGS) project has the project accession CAJVAQ000000000. This version of the project (01) has the accession number CAJVAQ010000000, and consists of sequences CAJVAQ010000001-CAJVAQ010000104. The assembly iyEctLitu1.1 is based on 110x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..104 /organism="Ectemnius lituratus" /mol_type="genomic DNA" /db_xref="taxon:2495015" WGS CAJVAQ010000001-CAJVAQ010000104 // LOCUS CAJUUB010000000 80 rc DNA linear INV 06-JUL-2021 DEFINITION Vespa crabro, whole genome shotgun sequencing project. ACCESSION CAJUUB000000000 VERSION CAJUUB000000000.1 DBLINK BioProject: PRJEB45335 BioSample: SAMEA7520500 KEYWORDS WGS. SOURCE Vespa crabro (European hornet) ORGANISM Vespa crabro Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Vespoidea; Vespidae; Vespinae; Vespa. REFERENCE 1 (bases 1 to 80) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-MAY-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Vespa crabro whole genome shotgun (WGS) project has the project accession CAJUUB000000000. This version of the project (01) has the accession number CAJUUB010000000, and consists of sequences CAJUUB010000001-CAJUUB010000080. The assembly iyVesCrab1.1 is based on 70x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..80 /organism="Vespa crabro" /mol_type="genomic DNA" /db_xref="taxon:7445" WGS CAJUUB010000001-CAJUUB010000080 // LOCUS CAJUUM010000000 41 rc DNA linear INV 06-JUL-2021 DEFINITION Malachius bipustulatus, whole genome shotgun sequencing project. ACCESSION CAJUUM000000000 VERSION CAJUUM000000000.1 DBLINK BioProject: PRJEB45315 BioSample: SAMEA7520537 KEYWORDS WGS. SOURCE Malachius bipustulatus ORGANISM Malachius bipustulatus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Melyridae; Malachiinae; Malachius. REFERENCE 1 (bases 1 to 41) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-MAY-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Malachius bipustulatus whole genome shotgun (WGS) project has the project accession CAJUUM000000000. This version of the project (01) has the accession number CAJUUM010000000, and consists of sequences CAJUUM010000001-CAJUUM010000041. The assembly icMalBipu1.1 is based on 32x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Due to ambiguous HiC signal and lack of additional evidence to support accurate placement several scaffolds that associate with Chromosome X by hic data have been submitted as unlocalised. These components are labelled SUPER_X_unloc_1-4. FEATURES Location/Qualifiers source 1..41 /organism="Malachius bipustulatus" /mol_type="genomic DNA" /db_xref="taxon:295700" WGS CAJUUM010000001-CAJUUM010000041 // LOCUS CAJVAY010000000 168 rc DNA linear INV 06-JUL-2021 DEFINITION Ocypus olens, whole genome shotgun sequencing project. ACCESSION CAJVAY000000000 VERSION CAJVAY000000000.1 DBLINK BioProject: PRJEB45833 BioSample: SAMEA7520211 KEYWORDS WGS. SOURCE Ocypus olens ORGANISM Ocypus olens Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Staphyliniformia; Staphylinidae; Staphylininae group; Staphylininae; Staphylinini; Ocypus. REFERENCE 1 (bases 1 to 168) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (21-JUN-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Ocypus olens whole genome shotgun (WGS) project has the project accession CAJVAY000000000. This version of the project (01) has the accession number CAJVAY010000000, and consists of sequences CAJVAY010000001-CAJVAY010000168. The assembly icOcyOlen1.1 is based on 40x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Order and orientation of scaffolds in the centromeric regions is less certain than in the rest of the assembly. FEATURES Location/Qualifiers source 1..168 /organism="Ocypus olens" /mol_type="genomic DNA" /db_xref="taxon:662956" WGS CAJVAY010000001-CAJVAY010000168 // LOCUS CAJVAM010000000 79 rc DNA linear INV 06-JUL-2021 DEFINITION Ectemnius lituratus, whole genome shotgun sequencing project. ACCESSION CAJVAM000000000 VERSION CAJVAM000000000.1 DBLINK BioProject: PRJEB45836 BioSample: SAMEA7520491 KEYWORDS WGS. SOURCE Ectemnius lituratus ORGANISM Ectemnius lituratus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Spheciformes; Crabronidae; Crabroninae; Crabronini; Crabronina; Ectemnius. REFERENCE 1 (bases 1 to 79) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (21-JUN-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Ectemnius lituratus whole genome shotgun (WGS) project has the project accession CAJVAM000000000. This version of the project (01) has the accession number CAJVAM010000000, and consists of sequences CAJVAM010000001-CAJVAM010000079. The assembly iyEctLitu1.1 is based on 110x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..79 /organism="Ectemnius lituratus" /mol_type="genomic DNA" /db_xref="taxon:2495015" WGS CAJVAM010000001-CAJVAM010000079 // LOCUS CAJUUR010000000 26 rc DNA linear INV 06-JUL-2021 DEFINITION Chrysoteuchia culmella, whole genome shotgun sequencing project. ACCESSION CAJUUR000000000 VERSION CAJUUR000000000.1 DBLINK BioProject: PRJEB45323 BioSample: SAMEA7701502 KEYWORDS WGS. SOURCE Chrysoteuchia culmella ORGANISM Chrysoteuchia culmella Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pyraloidea; Crambidae; Crambinae; Chrysoteuchia. REFERENCE 1 (bases 1 to 26) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-MAY-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Chrysoteuchia culmella whole genome shotgun (WGS) project has the project accession CAJUUR000000000. This version of the project (01) has the accession number CAJUUR010000000, and consists of sequences CAJUUR010000001-CAJUUR010000026. The assembly ilChrCulm1.1 is based on 43x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..26 /organism="Chrysoteuchia culmella" /mol_type="genomic DNA" /db_xref="taxon:1594250" WGS CAJUUR010000001-CAJUUR010000026 // LOCUS CAJUZJ010000000 12 rc DNA linear INV 06-JUL-2021 DEFINITION Lineus longissimus, whole genome shotgun sequencing project. ACCESSION CAJUZJ000000000 VERSION CAJUZJ000000000.1 DBLINK BioProject: PRJEB45696 BioSample: SAMEA7522833 KEYWORDS WGS. SOURCE Lineus longissimus ORGANISM Lineus longissimus Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Nemertea; Pilidiophora; Heteronemertea; Lineidae; Lineus. REFERENCE 1 (bases 1 to 12) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (14-JUN-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Lineus longissimus whole genome shotgun (WGS) project has the project accession CAJUZJ000000000. This version of the project (01) has the accession number CAJUZJ010000000, and consists of sequences CAJUZJ010000001-CAJUZJ010000012. The assembly tnLinLong1.1 is based on 79x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Chromosome 5 contains a large inversion between sister chromatids at approximately 11.1-15.4Mb. FEATURES Location/Qualifiers source 1..12 /organism="Lineus longissimus" /mol_type="genomic DNA" /db_xref="taxon:88925" WGS CAJUZJ010000001-CAJUZJ010000012 // LOCUS CAJUZF010000000 9 rc DNA linear INV 06-JUL-2021 DEFINITION Ypsolopha scabrella, whole genome shotgun sequencing project. ACCESSION CAJUZF000000000 VERSION CAJUZF000000000.1 DBLINK BioProject: PRJEB45691 BioSample: SAMEA7701504 KEYWORDS WGS. SOURCE Ypsolopha scabrella ORGANISM Ypsolopha scabrella Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Yponomeutoidea; Ypsolophidae; Ypsolopha. REFERENCE 1 (bases 1 to 9) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (14-JUN-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Ypsolopha scabrella whole genome shotgun (WGS) project has the project accession CAJUZF000000000. This version of the project (01) has the accession number CAJUZF010000000, and consists of sequences CAJUZF010000001-CAJUZF010000009. The assembly ilYpsScab1.1 is based on 17x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..9 /organism="Ypsolopha scabrella" /mol_type="genomic DNA" /db_xref="taxon:1870435" WGS CAJUZF010000001-CAJUZF010000009 // LOCUS CAJUUH010000000 7 rc DNA linear INV 06-JUL-2021 DEFINITION Bembecia ichneumoniformis, whole genome shotgun sequencing project. ACCESSION CAJUUH000000000 VERSION CAJUUH000000000.1 DBLINK BioProject: PRJEB45319 BioSample: SAMEA7701282 KEYWORDS WGS. SOURCE Bembecia ichneumoniformis (six-belted clearwing) ORGANISM Bembecia ichneumoniformis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Sesioidea; Sesiidae; Sesiinae; Synanthedonini; Bembecia. REFERENCE 1 (bases 1 to 7) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-MAY-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Bembecia ichneumoniformis whole genome shotgun (WGS) project has the project accession CAJUUH000000000. This version of the project (01) has the accession number CAJUUH010000000, and consists of sequences CAJUUH010000001-CAJUUH010000007. The assembly ilBemIchn1.1 is based on 30x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..7 /organism="Bembecia ichneumoniformis" /mol_type="genomic DNA" /db_xref="taxon:301037" WGS CAJUUH010000001-CAJUUH010000007 // LOCUS CAJUUV010000000 5 rc DNA linear VRT 06-JUL-2021 DEFINITION Taurulus bubalis, whole genome shotgun sequencing project. ACCESSION CAJUUV000000000 VERSION CAJUUV000000000.1 DBLINK BioProject: PRJEB45317 BioSample: SAMEA7522994 KEYWORDS WGS. SOURCE Taurulus bubalis ORGANISM Taurulus bubalis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Cottales; Cottidae; Taurulus. REFERENCE 1 (bases 1 to 5) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-MAY-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Taurulus bubalis whole genome shotgun (WGS) project has the project accession CAJUUV000000000. This version of the project (01) has the accession number CAJUUV010000000, and consists of sequences CAJUUV010000001-CAJUUV010000005. The assembly fTauBub2.1 is based on 38x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..5 /organism="Taurulus bubalis" /mol_type="genomic DNA" /db_xref="taxon:61643" WGS CAJUUV010000001-CAJUUV010000005 // LOCUS CAJUUG010000000 5 rc DNA linear INV 06-JUL-2021 DEFINITION Ennomos quercinarius, whole genome shotgun sequencing project. ACCESSION CAJUUG000000000 VERSION CAJUUG000000000.1 DBLINK BioProject: PRJEB45324 BioSample: SAMEA7701560 KEYWORDS WGS. SOURCE Ennomos quercinarius ORGANISM Ennomos quercinarius Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Ennominae; Ennomos. REFERENCE 1 (bases 1 to 5) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-MAY-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Ennomos quercinarius whole genome shotgun (WGS) project has the project accession CAJUUG000000000. This version of the project (01) has the accession number CAJUUG010000000, and consists of sequences CAJUUG010000001-CAJUUG010000005. The assembly ilEnnQuei1.1 is based on 47x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..5 /organism="Ennomos quercinarius" /mol_type="genomic DNA" /db_xref="taxon:875883" WGS CAJUUG010000001-CAJUUG010000005 // LOCUS CAJVCG010000000 2 rc DNA linear INV 06-JUL-2021 DEFINITION Amphipyra berbera, whole genome shotgun sequencing project. ACCESSION CAJVCG000000000 VERSION CAJVCG000000000.1 DBLINK BioProject: PRJEB45915 BioSample: SAMEA7701493 KEYWORDS WGS. SOURCE Amphipyra berbera ORGANISM Amphipyra berbera Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Amphipyra. REFERENCE 1 (bases 1 to 2) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (25-JUN-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Amphipyra berbera whole genome shotgun (WGS) project has the project accession CAJVCG000000000. This version of the project (01) has the accession number CAJVCG010000000, and consists of sequences CAJVCG010000001-CAJVCG010000002. The assembly ilAmpBerb1.1 is based on 41x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..2 /organism="Amphipyra berbera" /mol_type="genomic DNA" /db_xref="taxon:987877" WGS CAJVCG010000001-CAJVCG010000002 // LOCUS CAJUUF010000000 2 rc DNA linear INV 06-JUL-2021 DEFINITION Parapoynx stratiotata, whole genome shotgun sequencing project. ACCESSION CAJUUF000000000 VERSION CAJUUF000000000.1 DBLINK BioProject: PRJEB45330 BioSample: SAMEA7519920 KEYWORDS WGS. SOURCE Parapoynx stratiotata ORGANISM Parapoynx stratiotata Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pyraloidea; Crambidae; Nymphulinae; Parapoynx. REFERENCE 1 (bases 1 to 2) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-MAY-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Parapoynx stratiotata whole genome shotgun (WGS) project has the project accession CAJUUF000000000. This version of the project (01) has the accession number CAJUUF010000000, and consists of sequences CAJUUF010000001-CAJUUF010000002. The assembly ilParStra1.1 is based on 26x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..2 /organism="Parapoynx stratiotata" /mol_type="genomic DNA" /db_xref="taxon:1594321" WGS CAJUUF010000001-CAJUUF010000002 // LOCUS CAJUUD010000000 1 rc DNA linear INV 06-JUL-2021 DEFINITION Carcina quercana, whole genome shotgun sequencing project. ACCESSION CAJUUD000000000 VERSION CAJUUD000000000.1 DBLINK BioProject: PRJEB45321 BioSample: SAMEA7519850 KEYWORDS WGS. SOURCE Carcina quercana ORGANISM Carcina quercana Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Peleopodidae; Carcina. REFERENCE 1 (bases 1 to 1) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-MAY-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Carcina quercana whole genome shotgun (WGS) project has the project accession CAJUUD000000000. This version of the project (01) has the accession number CAJUUD010000000, and consists of sequence CAJUUD010000001. The assembly ilCarQuer1.1 is based on 57x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1 /organism="Carcina quercana" /mol_type="genomic DNA" /db_xref="taxon:116121" /note="contig: scaffold_42_ctg1" WGS CAJUUD010000001 // LOCUS CAJUUK010000000 1 rc DNA linear INV 06-JUL-2021 DEFINITION Noctua janthe, whole genome shotgun sequencing project. ACCESSION CAJUUK000000000 VERSION CAJUUK000000000.1 DBLINK BioProject: PRJEB45329 BioSample: SAMEA7701537 KEYWORDS WGS. SOURCE Noctua janthe ORGANISM Noctua janthe Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Noctuinae; Noctuini; Noctua. REFERENCE 1 (bases 1 to 1) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (27-MAY-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Noctua janthe whole genome shotgun (WGS) project has the project accession CAJUUK000000000. This version of the project (01) has the accession number CAJUUK010000000, and consists of sequence CAJUUK010000001. The assembly ilNocJant1.1 is based on 48x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1 /organism="Noctua janthe" /mol_type="genomic DNA" /db_xref="taxon:987995" /note="contig: scaffold_38_ctg1" WGS CAJUUK010000001 // LOCUS JAHRHI010000000 937 rc DNA linear ENV 03-JUL-2021 DEFINITION MAG: Wolbachia endosymbiont of Pissodes strobi isolate WGEN-1, whole genome shotgun sequencing project. ACCESSION JAHRHI000000000 VERSION JAHRHI000000000.1 DBLINK BioProject: PRJNA588625 BioSample: SAMN19814495 KEYWORDS WGS; Metagenome Assembled Genome; MAG. SOURCE Wolbachia endosymbiont of Pissodes strobi (symbiont metagenome) ORGANISM Wolbachia endosymbiont of Pissodes strobi Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Wolbachieae; Wolbachia; unclassified Wolbachia. REFERENCE 1 (bases 1 to 937) AUTHORS Whitehill,J.G.A., Gagalova,K., Yuen,M.S., Culibrk,L., Lin,D., Keeling,C., Coombe,L., Jackman,S.D., Warren,R.L., Ritland,C., Birol,I., Bohlmann,J. and Jones,S.J.M. TITLE Genome size expansion in a forest insect pest, the weevil Pissodes strobi, and signatures of a Wolbachia bacterial endosymbiont JOURNAL Unpublished REFERENCE 2 (bases 1 to 937) AUTHORS Whitehill,J.G.A., Gagalova,K., Yuen,M.S., Culibrk,L., Lin,D., Keeling,C., Coombe,L., Jackman,S.D., Warren,R.L., Ritland,C., Birol,I., Bohlmann,J. and Jones,S.J.M. TITLE Direct Submission JOURNAL Submitted (23-JUN-2021) Canada's Michael Smith Genome Sciences Centre, BC Cancer, 570 7th Ave, Vancouver, British Columbia V5Z 4S6, Canada COMMENT The Wolbachia endosymbiont of Pissodes strobi whole genome shotgun (WGS) project has the project accession JAHRHI000000000. This version of the project (01) has the accession number JAHRHI010000000, and consists of sequences JAHRHI010000001-JAHRHI010000937. Bacteria and source DNA available from Jorg Bohlmann, UBC. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: JUN-2019 Assembly Method :: ABySS v. 2.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 230.0x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 06/28/2021 10:42:35 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 5.2 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 1,717 CDSs (total) :: 1,670 Genes (coding) :: 1,550 CDSs (with protein) :: 1,550 Genes (RNA) :: 47 rRNAs :: 2, 3, 3 (5S, 16S, 23S) complete rRNAs :: 2, 1, 1 (5S, 16S, 23S) partial rRNAs :: 2, 2 (16S, 23S) tRNAs :: 35 ncRNAs :: 4 Pseudo Genes (total) :: 120 CDSs (without protein) :: 120 Pseudo Genes (ambiguous residues) :: 0 of 120 Pseudo Genes (frameshifted) :: 49 of 120 Pseudo Genes (incomplete) :: 84 of 120 Pseudo Genes (internal stop) :: 6 of 120 Pseudo Genes (multiple problems) :: 17 of 120 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..937 /organism="Wolbachia endosymbiont of Pissodes strobi" /mol_type="genomic DNA" /isolate="WGEN-1" /host="Pissodes strobi" /db_xref="taxon:2832337" /environmental_sample /country="Canada: British Columbia" /lat_lon="49.264800 N 123.116850 W" /collection_date="2019-11-10" /metagenome_source="symbiont metagenome" /note="metagenomic" WGS JAHRHI010000001-JAHRHI010000937 // LOCUS JADKXX010000000 29147 rc DNA linear VRT 01-JUL-2021 DEFINITION Butorides virescens isolate ROMO101590, whole genome shotgun sequencing project. ACCESSION JADKXX000000000 VERSION JADKXX000000000.1 DBLINK BioProject: PRJNA666735 BioSample: SAMN16326460 KEYWORDS WGS. SOURCE Butorides virescens (green heron) ORGANISM Butorides virescens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Pelecaniformes; Ardeidae; Butorides. REFERENCE 1 (bases 1 to 29147) AUTHORS Culibrk,L., Ashkani,J., Haddrath,O., Paton,T., Scherer,S., Aziz,N. and Jones,S.J. TITLE Genome sequencing and assembly of Green Heron (Butorides virescens) JOURNAL Unpublished REFERENCE 2 (bases 1 to 29147) AUTHORS Culibrk,L., Ashkani,J., Haddrath,O., Paton,T., Scherer,S., Aziz,N. and Jones,S.J. TITLE Direct Submission JOURNAL Submitted (03-NOV-2020) Genome Sciences Centre, GSC CanSeq, 570 West 7th Avenue, Vancouver, BC V5Z 4E6, Canada COMMENT The Butorides virescens whole genome shotgun (WGS) project has the project accession JADKXX000000000. This version of the project (01) has the accession number JADKXX010000000, and consists of sequences JADKXX010000001-JADKXX010029147. ##Genome-Assembly-Data-START## Assembly Method :: Supernova v. 2.1.1 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 53.0x Sequencing Technology :: HiSeq X ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..29147 /organism="Butorides virescens" /mol_type="genomic DNA" /isolate="ROMO101590" /specimen_voucher="1B-4519" /db_xref="taxon:110671" /sex="male" /tissue_type="Unspecified mixture of tissues" /dev_stage="adult" /country="Canada: Whitby, Ontario" /collection_date="2005-08-07" WGS JADKXX010000001-JADKXX010029147 // LOCUS JAHNUP010000000 2643 rc DNA linear INV 29-JUN-2021 DEFINITION Amphibalanus amphitrite isolate SeventyFive, whole genome shotgun sequencing project. ACCESSION JAHNUP000000000 VERSION JAHNUP000000000.1 DBLINK BioProject: PRJNA734913 BioSample: SAMN19549327 KEYWORDS WGS. SOURCE Amphibalanus amphitrite ORGANISM Amphibalanus amphitrite Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Hexanauplia; Cirripedia; Thoracica; Sessilia; Balanidae; Amphibalanus. REFERENCE 1 (bases 1 to 2643) AUTHORS Schultzhaus,J., Hervey,J., Smerchansky,M., Taitt,C., Leary,D., Bernot,J., Avdeyev,P., Orihuela,B., Crandall,K., Rittschof,D., Wahl,K. and Spillmann,C. TITLE A Reference genome of the acorn barnacle Amphibalanus amphitrite JOURNAL Unpublished REFERENCE 2 (bases 1 to 2643) AUTHORS Schultzhaus,J., Hervey,J., Smerchansky,M., Taitt,C., Leary,D., Bernot,J., Avdeyev,P., Orihuela,B., Crandall,K., Rittschof,D., Wahl,K. and Spillmann,C. TITLE Direct Submission JOURNAL Submitted (15-JUN-2021) NRL-DC, Naval Research Laboratory, 4555 Overlook Avenue - SW, Washington, DC 20375, USA COMMENT The Amphibalanus amphitrite whole genome shotgun (WGS) project has the project accession JAHNUP000000000. This version of the project (01) has the accession number JAHNUP010000000, and consists of sequences JAHNUP010000001-JAHNUP010002643. ##Genome-Assembly-Data-START## Assembly Date :: 10-DEC-2019 Assembly Method :: FALCON-Unzip v. 0.3.4 Assembly Name :: NRLGWU_Aamphi_draft Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 79.7x Sequencing Technology :: PacBio; Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..2643 /organism="Amphibalanus amphitrite" /mol_type="genomic DNA" /isolate="SeventyFive" /isolation_source="Laboratory cultivated, inbred" /db_xref="taxon:1232801" /tissue_type="Body" /country="USA" /collection_date="2018-07-23" WGS JAHNUP010000001-JAHNUP010002643 // LOCUS CAJQFV010000000 1100 rc DNA linear INV 14-APR-2021 DEFINITION Autographa pulchrina, whole genome shotgun sequencing project. ACCESSION CAJQFV000000000 VERSION CAJQFV000000000.1 DBLINK BioProject: PRJEB44049 BioSample: SAMEA7520527 KEYWORDS WGS. SOURCE Autographa pulchrina ORGANISM Autographa pulchrina Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Autographa. REFERENCE 1 (bases 1 to 1100) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (30-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Autographa pulchrina whole genome shotgun (WGS) project has the project accession CAJQFV000000000. This version of the project (01) has the accession number CAJQFV010000000, and consists of sequences CAJQFV010000001-CAJQFV010001100. The assembly ilAutPulc1.1 is based on 47x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..1100 /organism="Autographa pulchrina" /mol_type="genomic DNA" /db_xref="taxon:987893" WGS CAJQFV010000001-CAJQFV010001100 // LOCUS JAHDTO010000000 5410 rc DNA linear VRT 24-MAY-2021 DEFINITION Alosa sapidissima isolate fAloSap1, whole genome shotgun sequencing project. ACCESSION JAHDTO000000000 VERSION JAHDTO000000000.1 DBLINK BioProject: PRJNA728146 BioSample: SAMN18857608 KEYWORDS WGS. SOURCE Alosa sapidissima (American shad) ORGANISM Alosa sapidissima Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Alosa. REFERENCE 1 (bases 1 to 5410) AUTHORS Therkildsen,N.O., Tigano,A., Formenti,G., Hyle,R., Mountcastle,J., Balacco,J., Tracey,A., Sims,Y., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Alosa sapidissima (American shade) genome, fAloSap1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 5410) AUTHORS Therkildsen,N.O., Tigano,A., Formenti,G., Hyle,R., Mountcastle,J., Balacco,J., Tracey,A., Sims,Y., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (15-MAY-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Alosa sapidissima whole genome shotgun (WGS) project has the project accession JAHDTO000000000. This version of the project (01) has the accession number JAHDTO010000000, and consists of sequences JAHDTO010000001-JAHDTO010005410. ##Genome-Assembly-Data-START## Assembly Date :: 21-APR-2021 Assembly Method :: Hifisam v. 0.14; Purge_dups v. 1.0.1; Salsa v. 2.2; Scaff10X v. 3.2.1; Bionano Solve v. 3.6.1; VGP pipeline v. 2.0; gEVAL manual curation v. 2021-04-21 Assembly Name :: fAloSap1.alt Diploid :: Alternate Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 33.0x Sequencing Technology :: PacBio Sequel II HiFi; 10X Genomics linked reads; Bionano Genomics DLS; Arima Genomics Hi-C ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..5410 /organism="Alosa sapidissima" /mol_type="genomic DNA" /isolate="fAloSap1" /specimen_voucher="AsapiF_1" /db_xref="taxon:34773" /sex="male" /tissue_type="muscle" /dev_stage="adult" /country="USA: St. Johns River, Florida" /lat_lon="28.438892 N 81.894728 W" /collection_date="2020-02-07" /collected_by="Reid Hyle" WGS JAHDTO010000001-JAHDTO010005410 // LOCUS JAHDTN010000000 73 rc DNA linear VRT 25-MAY-2021 DEFINITION Alosa sapidissima isolate fAloSap1, whole genome shotgun sequencing project. ACCESSION JAHDTN000000000 VERSION JAHDTN000000000.1 DBLINK BioProject: PRJNA728145 BioSample: SAMN18857608 KEYWORDS WGS. SOURCE Alosa sapidissima (American shad) ORGANISM Alosa sapidissima Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Alosa. REFERENCE 1 (bases 1 to 73) AUTHORS Therkildsen,N.O., Tigano,A., Formenti,G., Hyle,R., Mountcastle,J., Balacco,J., Tracey,A., Sims,Y., Howe,K., Federigo,O. and Jarvis,E.D. TITLE Alosa sapidissima (American shade) genome, fAloSap1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 73) AUTHORS Therkildsen,N.O., Tigano,A., Formenti,G., Hyle,R., Mountcastle,J., Balacco,J., Tracey,A., Sims,Y., Howe,K., Federigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (15-MAY-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Alosa sapidissima whole genome shotgun (WGS) project has the project accession JAHDTN000000000. This version of the project (01) has the accession number JAHDTN010000000, and consists of sequences JAHDTN010000001-JAHDTN010000073. ##Genome-Assembly-Data-START## Assembly Date :: 21-APR-2021 Assembly Method :: Hifisam v. 0.14; Purge_dups v. 1.0.1; Salsa v. 2.2; Scaff10X v. 3.2.1; Bionano Solve v. 3.6.1; VGP pipeline v. 2.0; gEVAL manual curation v. 2021-04-21 Assembly Name :: fAloSap1.pri Diploid :: Principal Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 33.0x Sequencing Technology :: PacBio Sequel II HiFi; 10X Genomics linked reads; Bionano Genomics DLS; Arima Genomics Hi-C ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..73 /organism="Alosa sapidissima" /mol_type="genomic DNA" /isolate="fAloSap1" /specimen_voucher="AsapiF_1" /db_xref="taxon:34773" /sex="male" /tissue_type="muscle" /dev_stage="adult" /country="USA: St. Johns River, Florida" /lat_lon="28.438892 N 81.894728 W" /collection_date="2020-02-07" /collected_by="Reid Hyle" WGS JAHDTN010000001-JAHDTN010000073 WGS_SCAFLD CM031716-CM031739 // LOCUS VCHM03000000 1590 rc DNA linear VRT 25-MAY-2021 DEFINITION Reinhardtius hippoglossoides isolate HD-2018-mb, whole genome shotgun sequencing project. ACCESSION VCHM00000000 VERSION VCHM00000000.3 DBLINK BioProject: PRJNA499109 BioSample: SAMN11811143 KEYWORDS WGS. SOURCE Reinhardtius hippoglossoides (Greenland flounder) ORGANISM Reinhardtius hippoglossoides Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Reinhardtius. REFERENCE 1 (bases 1 to 1590) AUTHORS Ferchaud,A.-L., Normandeau,E., Djambazian,H., Ragoussis,I. and Bernatchez,L. TITLE Genome assembly of Greenland Halibut reveals a recent genetic sex determinism JOURNAL Unpublished REFERENCE 2 (bases 1 to 1590) AUTHORS Djambazian,H. TITLE Direct Submission JOURNAL Submitted (04-DEC-2018) Human Genetics, McGill University, 740 Doctor Penfield, Montreal, Quebec H3A 0G1, Canada REFERENCE 3 (bases 1 to 1590) AUTHORS Ferchaud,A.-L., Normandeau,E., Djambazian,H., Ragoussis,I. and Bernatchez,L. TITLE Direct Submission JOURNAL Submitted (23-FEB-2021) Departement de Biologie, Universite Laval, 1030 Avenue de la Medecine, Quebec G1V0A6, Canada COMMENT On May 19, 2021 this sequence version replaced VCHM00000000.2. The Reinhardtius hippoglossoides whole genome shotgun (WGS) project has the project accession VCHM00000000. This version of the project (03) has the accession number VCHM03000000, and consists of sequences VCHM03000001-VCHM03001590. ##Genome-Assembly-Data-START## Assembly Date :: 20-NOV-2020 Assembly Method :: wtdbg2 v. 2.5; Dovetail (Hi-C) v. 2018-08 Assembly Name :: UL_REHI_2.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 60.0x Sequencing Technology :: PacBio Sequel ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1590 /organism="Reinhardtius hippoglossoides" /mol_type="genomic DNA" /isolate="HD-2018-mb" /db_xref="taxon:111784" /sex="female" /tissue_type="muscle, blood" /dev_stage="Mature" /ecotype="Greenland" WGS VCHM03000001-VCHM03001590 WGS_SCAFLD CM031670-CM031693 // LOCUS OFHY04000000 363 rc DNA linear VRT 23-APR-2021 DEFINITION Astatotilapia calliptera, whole genome shotgun sequencing project. ACCESSION OFHY00000000 VERSION OFHY00000000.4 DBLINK BioProject: PRJEB24325 BioSample: SAMEA104026430 KEYWORDS WGS. SOURCE Astatotilapia calliptera (eastern happy) ORGANISM Astatotilapia calliptera Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Astatotilapia. REFERENCE 1 AUTHORS Datahose. TITLE Direct Submission JOURNAL Submitted (10-JAN-2018) SC, Wellcome Trust Sanger Institute, Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 363) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (16-APR-2021) SC, Wellcome Sanger Institute, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT On Apr 24, 2021 this sequence version replaced OFHY00000000.3. The Astatotilapia calliptera whole genome shotgun (WGS) project has the project accession OFHY00000000. This version of the project (04) has the accession number OFHY04000000, and consists of sequences OFHY04000001-OFHY04000363. The assembly fAstCal1.3 is based on 48x PacBio RSII data, 112x Illumina HiSeqX data generated from a 10X Genomics Chromium library, and single-enzyme BioNano Irys data. An initial PacBio assembly was made using Falcon-unzip and the primary contigs extended by merging with a miniasm assembly. The contigs were then scaffolded using the 10X data with scaff10x. After using the PacBio data to gap fill with PBJelly and polish with Quiver, the assembly was manually curated using gEVAL to correct mis-joins and improve concordance with the BioNano data. The assembly was then polished again using the 10X Illumina data and freebayes. Two genetic maps [PMID: 23622422, 25156298] were used to allocate scaffolds to chromosomes, followed by further curation and verification using gEVAL. The mitochondrial assembly was produced at The Rockefeller University using mitoVGP. FEATURES Location/Qualifiers source 1..363 /organism="Astatotilapia calliptera" /mol_type="genomic DNA" /db_xref="taxon:8154" WGS OFHY04000001-OFHY04000363 WGS_SCAFLD LS420019-LS420040 // LOCUS CAJSMG010000000 2079 rc DNA linear INV 19-MAY-2021 DEFINITION Volucella inanis, whole genome shotgun sequencing project. ACCESSION CAJSMG000000000 VERSION CAJSMG000000000.1 DBLINK BioProject: PRJEB44950 BioSample: SAMEA7520171 KEYWORDS WGS. SOURCE Volucella inanis ORGANISM Volucella inanis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Syrphoidea; Syrphidae; Eristalinae; Volucellini; Volucella. REFERENCE 1 (bases 1 to 2079) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (14-MAY-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Volucella inanis whole genome shotgun (WGS) project has the project accession CAJSMG000000000. This version of the project (01) has the accession number CAJSMG010000000, and consists of sequences CAJSMG010000001-CAJSMG010002079. The assembly idVolInan1.1 is based on 26x PacBio data, 10X Genomics Chromium data, and Arima2 Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..2079 /organism="Volucella inanis" /mol_type="genomic DNA" /db_xref="taxon:226151" WGS CAJSMG010000001-CAJSMG010002079 // LOCUS CAJSMD010000000 1813 rc DNA linear INV 19-MAY-2021 DEFINITION Eristalis pertinax, whole genome shotgun sequencing project. ACCESSION CAJSMD000000000 VERSION CAJSMD000000000.1 DBLINK BioProject: PRJEB44949 BioSample: SAMEA7520039 KEYWORDS WGS. SOURCE Eristalis pertinax ORGANISM Eristalis pertinax Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Syrphoidea; Syrphidae; Eristalinae; Eristalini; Eristalis. REFERENCE 1 (bases 1 to 1813) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (14-MAY-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Eristalis pertinax whole genome shotgun (WGS) project has the project accession CAJSMD000000000. This version of the project (01) has the accession number CAJSMD010000000, and consists of sequences CAJSMD010000001-CAJSMD010001813. The assembly idEriPert2.1 is based on 29x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Y chromosome identified by absence of read mapping from female sample idEriPert1. FEATURES Location/Qualifiers source 1..1813 /organism="Eristalis pertinax" /mol_type="genomic DNA" /db_xref="taxon:1572519" WGS CAJSMD010000001-CAJSMD010001813 // LOCUS CAJSLZ010000000 315 rc DNA linear INV 19-MAY-2021 DEFINITION Idaea aversata, whole genome shotgun sequencing project. ACCESSION CAJSLZ000000000 VERSION CAJSLZ000000000.1 DBLINK BioProject: PRJEB44946 BioSample: SAMEA7519834 KEYWORDS WGS. SOURCE Idaea aversata ORGANISM Idaea aversata Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Sterrhinae; Idaea. REFERENCE 1 (bases 1 to 315) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (14-MAY-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Idaea aversata whole genome shotgun (WGS) project has the project accession CAJSLZ000000000. This version of the project (01) has the accession number CAJSLZ010000000, and consists of sequences CAJSLZ010000001-CAJSLZ010000315. The assembly ilIdaAver1.1 is based on 56x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..315 /organism="Idaea aversata" /mol_type="genomic DNA" /db_xref="taxon:104447" WGS CAJSLZ010000001-CAJSLZ010000315 // LOCUS CAJSMB010000000 282 rc DNA linear INV 19-MAY-2021 DEFINITION Crocallis elinguaria, whole genome shotgun sequencing project. ACCESSION CAJSMB000000000 VERSION CAJSMB000000000.1 DBLINK BioProject: PRJEB44954 BioSample: SAMEA7701527 KEYWORDS WGS. SOURCE Crocallis elinguaria ORGANISM Crocallis elinguaria Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Ennominae; Crocallis. REFERENCE 1 (bases 1 to 282) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (14-MAY-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Crocallis elinguaria whole genome shotgun (WGS) project has the project accession CAJSMB000000000. This version of the project (01) has the accession number CAJSMB010000000, and consists of sequences CAJSMB010000001-CAJSMB010000282. The assembly ilCroElin1.1 is based on 44x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..282 /organism="Crocallis elinguaria" /mol_type="genomic DNA" /db_xref="taxon:934829" WGS CAJSMB010000001-CAJSMB010000282 // LOCUS CAJSMA010000000 496 rc DNA linear INV 19-MAY-2021 DEFINITION Blastobasis adustella, whole genome shotgun sequencing project. ACCESSION CAJSMA000000000 VERSION CAJSMA000000000.1 DBLINK BioProject: PRJEB44952 BioSample: SAMEA7520179 KEYWORDS WGS. SOURCE Blastobasis adustella ORGANISM Blastobasis adustella Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Blastobasidae; Blastobasis. REFERENCE 1 (bases 1 to 496) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (14-MAY-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Blastobasis adustella whole genome shotgun (WGS) project has the project accession CAJSMA000000000. This version of the project (01) has the accession number CAJSMA010000000, and consists of sequences CAJSMA010000001-CAJSMA010000496. The assembly ilBlaAdus2.1 is based on 50x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..496 /organism="Blastobasis adustella" /mol_type="genomic DNA" /db_xref="taxon:1869501" WGS CAJSMA010000001-CAJSMA010000496 // LOCUS CAJSMF010000000 249 rc DNA linear INV 19-MAY-2021 DEFINITION Eristalis pertinax, whole genome shotgun sequencing project. ACCESSION CAJSMF000000000 VERSION CAJSMF000000000.1 DBLINK BioProject: PRJEB44948 BioSample: SAMEA7520039 KEYWORDS WGS. SOURCE Eristalis pertinax ORGANISM Eristalis pertinax Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Syrphoidea; Syrphidae; Eristalinae; Eristalini; Eristalis. REFERENCE 1 (bases 1 to 249) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (14-MAY-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Eristalis pertinax whole genome shotgun (WGS) project has the project accession CAJSMF000000000. This version of the project (01) has the accession number CAJSMF010000000, and consists of sequences CAJSMF010000001-CAJSMF010000249. The assembly idEriPert2.1 is based on 29x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Y chromosome identified by absence of read mapping from female sample idEriPert1. FEATURES Location/Qualifiers source 1..249 /organism="Eristalis pertinax" /mol_type="genomic DNA" /db_xref="taxon:1572519" WGS CAJSMF010000001-CAJSMF010000249 // LOCUS CAJSME010000000 9 rc DNA linear INV 19-MAY-2021 DEFINITION Blastobasis adustella, whole genome shotgun sequencing project. ACCESSION CAJSME000000000 VERSION CAJSME000000000.1 DBLINK BioProject: PRJEB44953 BioSample: SAMEA7520179 KEYWORDS WGS. SOURCE Blastobasis adustella ORGANISM Blastobasis adustella Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Blastobasidae; Blastobasis. REFERENCE 1 (bases 1 to 9) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (14-MAY-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Blastobasis adustella whole genome shotgun (WGS) project has the project accession CAJSME000000000. This version of the project (01) has the accession number CAJSME010000000, and consists of sequences CAJSME010000001-CAJSME010000009. The assembly ilBlaAdus2.1 is based on 50x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..9 /organism="Blastobasis adustella" /mol_type="genomic DNA" /db_xref="taxon:1869501" WGS CAJSME010000001-CAJSME010000009 // LOCUS CAJSMC010000000 7 rc DNA linear INV 19-MAY-2021 DEFINITION Crocallis elinguaria, whole genome shotgun sequencing project. ACCESSION CAJSMC000000000 VERSION CAJSMC000000000.1 DBLINK BioProject: PRJEB44955 BioSample: SAMEA7701527 KEYWORDS WGS. SOURCE Crocallis elinguaria ORGANISM Crocallis elinguaria Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Ennominae; Crocallis. REFERENCE 1 (bases 1 to 7) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (14-MAY-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Crocallis elinguaria whole genome shotgun (WGS) project has the project accession CAJSMC000000000. This version of the project (01) has the accession number CAJSMC010000000, and consists of sequences CAJSMC010000001-CAJSMC010000007. The assembly ilCroElin1.1 is based on 44x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..7 /organism="Crocallis elinguaria" /mol_type="genomic DNA" /db_xref="taxon:934829" WGS CAJSMC010000001-CAJSMC010000007 // LOCUS CAJSMH010000000 46 rc DNA linear INV 19-MAY-2021 DEFINITION Volucella inanis, whole genome shotgun sequencing project. ACCESSION CAJSMH000000000 VERSION CAJSMH000000000.1 DBLINK BioProject: PRJEB44951 BioSample: SAMEA7520171 KEYWORDS WGS. SOURCE Volucella inanis ORGANISM Volucella inanis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Syrphoidea; Syrphidae; Eristalinae; Volucellini; Volucella. REFERENCE 1 (bases 1 to 46) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (14-MAY-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Volucella inanis whole genome shotgun (WGS) project has the project accession CAJSMH000000000. This version of the project (01) has the accession number CAJSMH010000000, and consists of sequences CAJSMH010000001-CAJSMH010000046. The assembly idVolInan1.1 is based on 26x PacBio data, 10X Genomics Chromium data, and Arima2 Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..46 /organism="Volucella inanis" /mol_type="genomic DNA" /db_xref="taxon:226151" WGS CAJSMH010000001-CAJSMH010000046 // LOCUS CAJRAJ010000000 13348 rc DNA linear INV 11-MAY-2021 DEFINITION Dolomedes plantarius, whole genome shotgun sequencing project. ACCESSION CAJRAJ000000000 VERSION CAJRAJ000000000.1 DBLINK BioProject: PRJEB44428 BioSample: SAMEA994727 KEYWORDS WGS. SOURCE Dolomedes plantarius ORGANISM Dolomedes plantarius Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Araneae; Araneomorphae; Entelegynae; Lycosoidea; Pisauridae; Dolomedes. REFERENCE 1 (bases 1 to 13348) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (20-APR-2021) SC, Wellcome Sanger Institute, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Dolomedes plantarius whole genome shotgun (WGS) project has the project accession CAJRAJ000000000. This version of the project (01) has the accession number CAJRAJ010000000, and consists of sequences CAJRAJ010000001-CAJRAJ010013348. The assembly qDolPla1.1 is based on 55x PacBio data and 39x 10X Genomics Chromium data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with purge_dups, 10X based scaffolding with scaff10x, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. FEATURES Location/Qualifiers source 1..13348 /organism="Dolomedes plantarius" /mol_type="genomic DNA" /db_xref="taxon:257759" WGS CAJRAJ010000001-CAJRAJ010013348 // LOCUS CAJHNH020000000 8586 rc DNA linear INV 11-MAY-2021 DEFINITION Candidula unifasciata, whole genome shotgun sequencing project. ACCESSION CAJHNH000000000 VERSION CAJHNH000000000.2 DBLINK BioProject: PRJEB41346 BioSample: SAMEA7574008 Sequence Read Archive: ERR5838591, ERR5838592, ERR5838593, ERR5838594, ERR5838595, ERR5838596, ERR5838597, ERR5838598, ERR5838605, ERR5838606, ERR5841713, ERR5845218, ERR5845219 KEYWORDS WGS. SOURCE Candidula unifasciata ORGANISM Candidula unifasciata Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Gastropoda; Heterobranchia; Euthyneura; Panpulmonata; Eupulmonata; Stylommatophora; Helicina; Helicoidea; Geomitridae; Candidula. REFERENCE 1 (bases 1 to 8586) CONSRTM Molecular Ecology Group TITLE Direct Submission JOURNAL Submitted (16-NOV-2020) Senckenber Biodiversity and Climate Research Centre Frankfurt, Molecular Ecology Group, Georg-Voigt-Strasse 14-16, DE-60325, Frankfurt am Main, Germany REFERENCE 2 (bases 1 to 8586) CONSRTM Molecular Ecology Group TITLE Direct Submission JOURNAL Submitted (29-APR-2021) Senckenber Biodiversity and Climate Research Centre Frankfurt, Molecular Ecology Group, Georg-Voigt-Strasse 14-16, DE-60325, Frankfurt am Main, Germany COMMENT On May 16, 2021 this sequence version replaced CAJHNH000000000.1. The Candidula unifasciata whole genome shotgun (WGS) project has the project accession CAJHNH000000000. This version of the project (02) has the accession number CAJHNH020000000, and consists of sequences CAJHNH020000001-CAJHNH020008586. Here we present the draft genome sequence of the land snail Candidula unifasciata, a representative of the highly diverse Geomitridae family from western Palearctic region and Macaronesia. Analyses are based on Illumina pair-end, PacBio and Oxford Nanopore Technologies sequencing. Coverages: 120.6X for Illumnia; 25.6X for PacBio. FEATURES Location/Qualifiers source 1..8586 /organism="Candidula unifasciata" /mol_type="genomic DNA" /db_xref="taxon:100452" WGS CAJHNH020000001-CAJHNH020008586 // LOCUS CAJRAW010000000 2502 rc DNA linear VRT 11-MAY-2021 DEFINITION Caprimulgus europaeus, whole genome shotgun sequencing project. ACCESSION CAJRAW000000000 VERSION CAJRAW000000000.1 DBLINK BioProject: PRJEB44541 BioSample: SAMEA7524394 KEYWORDS WGS. SOURCE Caprimulgus europaeus (Eurasian nightjar) ORGANISM Caprimulgus europaeus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Caprimulgimorphae; Caprimulgiformes; Caprimulgidae; Caprimulginae; Caprimulgus. REFERENCE 1 (bases 1 to 2502) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (26-APR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Caprimulgus europaeus whole genome shotgun (WGS) project has the project accession CAJRAW000000000. This version of the project (01) has the accession number CAJRAW010000000, and consists of sequences CAJRAW010000001-CAJRAW010002502. The assembly bCapEur3.1 is based on 87x PacBio data, 10X Genomics Chromium data, and Arima2 Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig separation with purge_dups, 10X based scaffolding with scaff10x, Arrow polishing assisted by Merfin, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..2502 /organism="Caprimulgus europaeus" /mol_type="genomic DNA" /db_xref="taxon:111811" WGS CAJRAW010000001-CAJRAW010002502 // LOCUS CAJRBC010000000 3628 rc DNA linear INV 11-MAY-2021 DEFINITION Zeuzera pyrina, whole genome shotgun sequencing project. ACCESSION CAJRBC000000000 VERSION CAJRBC000000000.1 DBLINK BioProject: PRJEB44633 BioSample: SAMEA7701286 KEYWORDS WGS. SOURCE Zeuzera pyrina ORGANISM Zeuzera pyrina Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Cossoidea; Cossidae; Zeuzerinae; Zeuzera. REFERENCE 1 (bases 1 to 3628) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (29-APR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Zeuzera pyrina whole genome shotgun (WGS) project has the project accession CAJRBC000000000. This version of the project (01) has the accession number CAJRBC010000000, and consists of sequences CAJRBC010000001-CAJRBC010003628. The assembly ilZeuPyri1.1 is based on 38x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..3628 /organism="Zeuzera pyrina" /mol_type="genomic DNA" /db_xref="taxon:1101072" WGS CAJRBC010000001-CAJRBC010003628 // LOCUS CAJRAG010000000 2278 rc DNA linear PLN 11-MAY-2021 DEFINITION Impatiens glandulifera, whole genome shotgun sequencing project. ACCESSION CAJRAG000000000 VERSION CAJRAG000000000.1 DBLINK BioProject: PRJEB44450 BioSample: SAMEA5248722 KEYWORDS WGS. SOURCE Impatiens glandulifera ORGANISM Impatiens glandulifera Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Balsaminaceae; Impatiens. REFERENCE 1 (bases 1 to 2278) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (21-APR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Impatiens glandulifera whole genome shotgun (WGS) project has the project accession CAJRAG000000000. This version of the project (01) has the accession number CAJRAG010000000, and consists of sequences CAJRAG010000001-CAJRAG010002278. The assembly dImpGla2.1 is based on 76x PacBio data, 34x 10X Genomics Chromium data, BioNano data generated at the Wellcome Sanger Institute, and Hi-C data generated at the Baylor College of Medicine. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig separation with purge_dups, 10X based scaffolding with scaff10x, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. FEATURES Location/Qualifiers source 1..2278 /organism="Impatiens glandulifera" /mol_type="genomic DNA" /db_xref="taxon:253017" WGS CAJRAG010000001-CAJRAG010002278 // LOCUS CAJRBD010000000 3319 rc DNA linear INV 11-MAY-2021 DEFINITION Habrosyne pyritoides, whole genome shotgun sequencing project. ACCESSION CAJRBD000000000 VERSION CAJRBD000000000.1 DBLINK BioProject: PRJEB44630 BioSample: SAMEA7701298 KEYWORDS WGS. SOURCE Habrosyne pyritoides ORGANISM Habrosyne pyritoides Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Drepanoidea; Drepanidae; Thyatirinae; Habrosyne. REFERENCE 1 (bases 1 to 3319) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (29-APR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Habrosyne pyritoides whole genome shotgun (WGS) project has the project accession CAJRBD000000000. This version of the project (01) has the accession number CAJRBD010000000, and consists of sequences CAJRBD010000001-CAJRBD010003319. The assembly ilHabPyri1.1 is based on 52x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..3319 /organism="Habrosyne pyritoides" /mol_type="genomic DNA" /db_xref="taxon:721137" WGS CAJRBD010000001-CAJRBD010003319 // LOCUS CAJRAE010000000 262 rc DNA linear INV 11-MAY-2021 DEFINITION Hemaris fuciformis, whole genome shotgun sequencing project. ACCESSION CAJRAE000000000 VERSION CAJRAE000000000.1 DBLINK BioProject: PRJEB44425 BioSample: SAMEA5248724 KEYWORDS WGS. SOURCE Hemaris fuciformis ORGANISM Hemaris fuciformis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Macroglossinae; Dilophonotini; Hemaris. REFERENCE 1 (bases 1 to 262) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (20-APR-2021) SC, Wellcome Sanger Institute, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Hemaris fuciformis whole genome shotgun (WGS) project has the project accession CAJRAE000000000. This version of the project (01) has the accession number CAJRAE010000000, and consists of sequences CAJRAE010000001-CAJRAE010000262. The assembly iHemFuc1.1 (alternate haplotype) is based on 88x PacBio data, 88x 10X Genomics Chromium data, and BioNano data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig separation with purge_dups, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding with Solve, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. FEATURES Location/Qualifiers source 1..262 /organism="Hemaris fuciformis" /mol_type="genomic DNA" /db_xref="taxon:987953" WGS CAJRAE010000001-CAJRAE010000262 // LOCUS CAJRBA010000000 182 rc DNA linear INV 11-MAY-2021 DEFINITION Coccinella septempunctata, whole genome shotgun sequencing project. ACCESSION CAJRBA000000000 VERSION CAJRBA000000000.1 DBLINK BioProject: PRJEB44628 BioSample: SAMEA7520205 KEYWORDS WGS. SOURCE Coccinella septempunctata (seven-spotted ladybird) ORGANISM Coccinella septempunctata Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Coccinellidae; Coccinellinae; Coccinellini; Coccinella. REFERENCE 1 (bases 1 to 182) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (29-APR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Coccinella septempunctata whole genome shotgun (WGS) project has the project accession CAJRBA000000000. This version of the project (01) has the accession number CAJRBA010000000, and consists of sequences CAJRBA010000001-CAJRBA010000182. The assembly icCocSept1.1 is based on 76x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..182 /organism="Coccinella septempunctata" /mol_type="genomic DNA" /db_xref="taxon:41139" WGS CAJRBA010000001-CAJRBA010000182 // LOCUS CAJRBI010000000 666 rc DNA linear INV 11-MAY-2021 DEFINITION Nomada fabriciana, whole genome shotgun sequencing project. ACCESSION CAJRBI000000000 VERSION CAJRBI000000000.1 DBLINK BioProject: PRJEB44637 BioSample: SAMEA7520701 KEYWORDS WGS. SOURCE Nomada fabriciana ORGANISM Nomada fabriciana Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Apidae; Nomadini; Nomada. REFERENCE 1 (bases 1 to 666) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (29-APR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Nomada fabriciana whole genome shotgun (WGS) project has the project accession CAJRBI000000000. This version of the project (01) has the accession number CAJRBI010000000, and consists of sequences CAJRBI010000001-CAJRBI010000666. The assembly iyNomFabr1.1 is based on 99x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..666 /organism="Nomada fabriciana" /mol_type="genomic DNA" /db_xref="taxon:601510" WGS CAJRBI010000001-CAJRBI010000666 // LOCUS CAJRAK010000000 853 rc DNA linear INV 11-MAY-2021 DEFINITION Osmia bicornis bicornis, whole genome shotgun sequencing project. ACCESSION CAJRAK000000000 VERSION CAJRAK000000000.1 DBLINK BioProject: PRJEB44454 BioSample: SAMEA5248723 KEYWORDS WGS. SOURCE Osmia bicornis bicornis ORGANISM Osmia bicornis bicornis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Megachilidae; Megachilinae; Osmia. REFERENCE 1 (bases 1 to 853) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (21-APR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Osmia bicornis bicornis whole genome shotgun (WGS) project has the project accession CAJRAK000000000. This version of the project (01) has the accession number CAJRAK010000000, and consists of sequences CAJRAK010000001-CAJRAK010000853. The assembly iOsmBic2.1 is based on 93x PacBio data and 46x 10X Genomics Chromium data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig separation with purge_dups, 10X based scaffolding with scaff10x, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. FEATURES Location/Qualifiers source 1..853 /organism="Osmia bicornis bicornis" /mol_type="genomic DNA" /sub_species="bicornis" /db_xref="taxon:1437191" WGS CAJRAK010000001-CAJRAK010000853 // LOCUS CAJRAB010000000 2316 rc DNA linear INV 11-MAY-2021 DEFINITION Brachyptera putata, whole genome shotgun sequencing project. ACCESSION CAJRAB000000000 VERSION CAJRAB000000000.1 DBLINK BioProject: PRJEB44420 BioSample: SAMEA5248727 KEYWORDS WGS. SOURCE Brachyptera putata ORGANISM Brachyptera putata Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Polyneoptera; Plecoptera; Nemouroidea; Taeniopterygidae; Brachypterainae; Brachyptera. REFERENCE 1 (bases 1 to 2316) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (20-APR-2021) SC, Wellcome Sanger Institute, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Brachyptera putata whole genome shotgun (WGS) project has the project accession CAJRAB000000000. This version of the project (01) has the accession number CAJRAB010000000, and consists of sequences CAJRAB010000001-CAJRAB010002316. The assembly iBraPut3m.1 is based on 64x PacBio data and 101x 10X Genomics Chromium data generated at the Wellcome Sanger Institute, and Hi-C data generated at the Baylor College of Medicine. iBraPut3m is a pool of 2 individuals (iBraBut1 and iBraPut2). PacBio data is from iBraPut3m, 10X data is from iBraPut1, and Hi-C is from another individual, iBraPut4. The assembly process included the following sequence of steps: initial PacBio assembly generation with wtdbg2, Arrow polishing with the PacBio data, FreeBayes polishing with the 10X data, 10X based scaffolding with scaff10x, Hi-C based scaffolding and curation carried out at Baylor, a further round of FreeBayes polishing with the 10X data, and retained haplotig separation with purge_dups. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..2316 /organism="Brachyptera putata" /mol_type="genomic DNA" /db_xref="taxon:2065413" WGS CAJRAB010000001-CAJRAB010002316 // LOCUS CAJRAH010000000 1105 rc DNA linear PLN 11-MAY-2021 DEFINITION Impatiens glandulifera, whole genome shotgun sequencing project. ACCESSION CAJRAH000000000 VERSION CAJRAH000000000.1 DBLINK BioProject: PRJEB44449 BioSample: SAMEA5248722 KEYWORDS WGS. SOURCE Impatiens glandulifera ORGANISM Impatiens glandulifera Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Balsaminaceae; Impatiens. REFERENCE 1 (bases 1 to 1105) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (21-APR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Impatiens glandulifera whole genome shotgun (WGS) project has the project accession CAJRAH000000000. This version of the project (01) has the accession number CAJRAH010000000, and consists of sequences CAJRAH010000001-CAJRAH010001105. The assembly dImpGla2.1 is based on 76x PacBio data, 34x 10X Genomics Chromium data, BioNano data generated at the Wellcome Sanger Institute, and Hi-C data generated at the Baylor College of Medicine. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig separation with purge_dups, 10X based scaffolding with scaff10x, Hi-C based scaffolding and curation carried out at Baylor, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..1105 /organism="Impatiens glandulifera" /mol_type="genomic DNA" /db_xref="taxon:253017" WGS CAJRAH010000001-CAJRAH010001105 // LOCUS CAJRAL010000000 425 rc DNA linear INV 11-MAY-2021 DEFINITION Osmia bicornis bicornis, whole genome shotgun sequencing project. ACCESSION CAJRAL000000000 VERSION CAJRAL000000000.1 DBLINK BioProject: PRJEB44455 BioSample: SAMEA5248723 KEYWORDS WGS. SOURCE Osmia bicornis bicornis ORGANISM Osmia bicornis bicornis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Megachilidae; Megachilinae; Osmia. REFERENCE 1 (bases 1 to 425) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (21-APR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Osmia bicornis bicornis whole genome shotgun (WGS) project has the project accession CAJRAL000000000. This version of the project (01) has the accession number CAJRAL010000000, and consists of sequences CAJRAL010000001-CAJRAL010000425. The assembly iOsmBic2.1 is based on 93x PacBio data and 46x 10X Genomics Chromium data generated at the Wellcome Sanger Institute, and Hi-C data generated at the Baylor College of Medicine. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig separation with purge_dups, 10X based scaffolding with scaff10x, Hi-C based scaffolding and curation carried out at Baylor, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..425 /organism="Osmia bicornis bicornis" /mol_type="genomic DNA" /sub_species="bicornis" /db_xref="taxon:1437191" WGS CAJRAL010000001-CAJRAL010000425 // LOCUS CABFKC020000000 278 rc DNA linear VRT 11-MAY-2021 DEFINITION Streptopelia turtur, whole genome shotgun sequencing project. ACCESSION CABFKC000000000 VERSION CABFKC000000000.2 DBLINK BioProject: PRJEB32724 BioSample: SAMEA994735 KEYWORDS WGS. SOURCE Streptopelia turtur ORGANISM Streptopelia turtur Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Columbiformes; Columbidae; Streptopelia. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (24-MAY-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 278) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (20-APR-2021) SC, Wellcome Sanger Institute, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT On May 15, 2021 this sequence version replaced CABFKC000000000.1. The Streptopelia turtur whole genome shotgun (WGS) project has the project accession CABFKC000000000. This version of the project (02) has the accession number CABFKC020000000, and consists of sequences CABFKC020000001-CABFKC020000278. The assembly bStrTur1.2 is based on 44x PacBio data, 62x coverage 10X Genomics Chromium data, and BioNano data generated at the Wellcome Sanger Institute, and 106x coverage Hi-C data generated by Arima Genomics. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with Purge Haplotigs, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds are named by synteny to Gallus gallus. FEATURES Location/Qualifiers source 1..278 /organism="Streptopelia turtur" /mol_type="genomic DNA" /db_xref="taxon:177155" WGS CABFKC020000001-CABFKC020000278 // LOCUS CAJRAI010000000 423 rc DNA linear INV 11-MAY-2021 DEFINITION Dolomedes plantarius, whole genome shotgun sequencing project. ACCESSION CAJRAI000000000 VERSION CAJRAI000000000.1 DBLINK BioProject: PRJEB44429 BioSample: SAMEA994727 KEYWORDS WGS. SOURCE Dolomedes plantarius ORGANISM Dolomedes plantarius Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Araneae; Araneomorphae; Entelegynae; Lycosoidea; Pisauridae; Dolomedes. REFERENCE 1 (bases 1 to 423) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (20-APR-2021) SC, Wellcome Sanger Institute, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Dolomedes plantarius whole genome shotgun (WGS) project has the project accession CAJRAI000000000. This version of the project (01) has the accession number CAJRAI010000000, and consists of sequences CAJRAI010000001-CAJRAI010000423. The assembly qDolPla1.1 is based on 55x PacBio data and 39x 10X Genomics Chromium data generated at the Wellcome Sanger Institute, and Hi-C data generated at the Baylor College of Medicine. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with purge_dups, 10X based scaffolding with scaff10x, Hi-C based scaffolding and improvement by the Aiden lab as part of a collaboration with DNA Zoo using 3D-DNA and Juicebox, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..423 /organism="Dolomedes plantarius" /mol_type="genomic DNA" /db_xref="taxon:257759" WGS CAJRAI010000001-CAJRAI010000423 // LOCUS CAJEUG020000000 197 rc DNA linear ROD 11-MAY-2021 DEFINITION Arvicola amphibius, whole genome shotgun sequencing project. ACCESSION CAJEUG000000000 VERSION CAJEUG000000000.2 DBLINK BioProject: PRJEB39550 BioSample: SAMEA994740 KEYWORDS WGS. SOURCE Arvicola amphibius (Eurasian water vole) ORGANISM Arvicola amphibius Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Arvicola. REFERENCE 1 (bases 1 to 197) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (27-JUL-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 197) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (30-APR-2021) SC, Wellcome Sanger Institute, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT On May 15, 2021 this sequence version replaced CAJEUG000000000.1. The Arvicola amphibius whole genome shotgun (WGS) project has the project accession CAJEUG000000000. This version of the project (02) has the accession number CAJEUG020000000, and consists of sequences CAJEUG020000001-CAJEUG020000197. The assembly mArvAmp1.2 is based on 45x PacBio data, 52x 10X Genomics Chromium data, BioNano data and 6x Dovetail Hi-C data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig separation with purge_dups, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding with Solve, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..197 /organism="Arvicola amphibius" /mol_type="genomic DNA" /db_xref="taxon:1047088" WGS CAJEUG020000001-CAJEUG020000197 // LOCUS CAJRBH010000000 181 rc DNA linear INV 11-MAY-2021 DEFINITION Nomada fabriciana, whole genome shotgun sequencing project. ACCESSION CAJRBH000000000 VERSION CAJRBH000000000.1 DBLINK BioProject: PRJEB44636 BioSample: SAMEA7520701 KEYWORDS WGS. SOURCE Nomada fabriciana ORGANISM Nomada fabriciana Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Apidae; Nomadini; Nomada. REFERENCE 1 (bases 1 to 181) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (29-APR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Nomada fabriciana whole genome shotgun (WGS) project has the project accession CAJRBH000000000. This version of the project (01) has the accession number CAJRBH010000000, and consists of sequences CAJRBH010000001-CAJRBH010000181. The assembly iyNomFabr1.1 is based on 99x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..181 /organism="Nomada fabriciana" /mol_type="genomic DNA" /db_xref="taxon:601510" WGS CAJRBH010000001-CAJRBH010000181 // LOCUS CAJRAV010000000 84 rc DNA linear VRT 11-MAY-2021 DEFINITION Caprimulgus europaeus, whole genome shotgun sequencing project. ACCESSION CAJRAV000000000 VERSION CAJRAV000000000.1 DBLINK BioProject: PRJEB44540 BioSample: SAMEA7524394 KEYWORDS WGS. SOURCE Caprimulgus europaeus (Eurasian nightjar) ORGANISM Caprimulgus europaeus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Caprimulgimorphae; Caprimulgiformes; Caprimulgidae; Caprimulginae; Caprimulgus. REFERENCE 1 (bases 1 to 84) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (26-APR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Caprimulgus europaeus whole genome shotgun (WGS) project has the project accession CAJRAV000000000. This version of the project (01) has the accession number CAJRAV010000000, and consists of sequences CAJRAV010000001-CAJRAV010000084. The assembly bCapEur3.1 is based on 87x PacBio data, 10X Genomics Chromium data, and Arima2 Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig separation with purge_dups, 10X based scaffolding with scaff10x, Arrow polishing assisted by Merfin, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..84 /organism="Caprimulgus europaeus" /mol_type="genomic DNA" /db_xref="taxon:111811" WGS CAJRAV010000001-CAJRAV010000084 // LOCUS CAJRAZ010000000 14 rc DNA linear INV 11-MAY-2021 DEFINITION Coccinella septempunctata, whole genome shotgun sequencing project. ACCESSION CAJRAZ000000000 VERSION CAJRAZ000000000.1 DBLINK BioProject: PRJEB44629 BioSample: SAMEA7520205 KEYWORDS WGS. SOURCE Coccinella septempunctata (seven-spotted ladybird) ORGANISM Coccinella septempunctata Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Coccinellidae; Coccinellinae; Coccinellini; Coccinella. REFERENCE 1 (bases 1 to 14) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (29-APR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Coccinella septempunctata whole genome shotgun (WGS) project has the project accession CAJRAZ000000000. This version of the project (01) has the accession number CAJRAZ010000000, and consists of sequences CAJRAZ010000001-CAJRAZ010000014. The assembly icCocSept1.1 is based on 76x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..14 /organism="Coccinella septempunctata" /mol_type="genomic DNA" /db_xref="taxon:41139" WGS CAJRAZ010000001-CAJRAZ010000014 // LOCUS CAJRBB010000000 5 rc DNA linear INV 11-MAY-2021 DEFINITION Zeuzera pyrina, whole genome shotgun sequencing project. ACCESSION CAJRBB000000000 VERSION CAJRBB000000000.1 DBLINK BioProject: PRJEB44632 BioSample: SAMEA7701286 KEYWORDS WGS. SOURCE Zeuzera pyrina ORGANISM Zeuzera pyrina Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Cossoidea; Cossidae; Zeuzerinae; Zeuzera. REFERENCE 1 (bases 1 to 5) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (29-APR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Zeuzera pyrina whole genome shotgun (WGS) project has the project accession CAJRBB000000000. This version of the project (01) has the accession number CAJRBB010000000, and consists of sequences CAJRBB010000001-CAJRBB010000005. The assembly ilZeuPyri1.1 is based on 38x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..5 /organism="Zeuzera pyrina" /mol_type="genomic DNA" /db_xref="taxon:1101072" WGS CAJRBB010000001-CAJRBB010000005 // LOCUS CAJRAC010000000 12 rc DNA linear INV 11-MAY-2021 DEFINITION Hemaris fuciformis, whole genome shotgun sequencing project. ACCESSION CAJRAC000000000 VERSION CAJRAC000000000.1 DBLINK BioProject: PRJEB44424 BioSample: SAMEA5248724 KEYWORDS WGS. SOURCE Hemaris fuciformis ORGANISM Hemaris fuciformis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Macroglossinae; Dilophonotini; Hemaris. REFERENCE 1 (bases 1 to 12) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (20-APR-2021) SC, Wellcome Sanger Institute, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Hemaris fuciformis whole genome shotgun (WGS) project has the project accession CAJRAC000000000. This version of the project (01) has the accession number CAJRAC010000000, and consists of sequences CAJRAC010000001-CAJRAC010000012. The assembly iHemFuc1.1 is based on 88x PacBio data, 88x 10X Genomics Chromium data, and BioNano data generated at the Wellcome Sanger Institute, and Hi-C data generated at the Baylor College of Medicine. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig separation with purge_dups, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding with Solve, Hi-C based scaffolding and curation carried out at Baylor, Arrow polishing, and two rounds of FreeBayes polishing. The mitochondrial genomes was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..12 /organism="Hemaris fuciformis" /mol_type="genomic DNA" /db_xref="taxon:987953" WGS CAJRAC010000001-CAJRAC010000012 // LOCUS CAJQTU010000000 142 rc DNA linear INV 07-MAY-2021 DEFINITION Desoria tigrina, whole genome shotgun sequencing project. ACCESSION CAJQTU000000000 VERSION CAJQTU000000000.1 DBLINK BioProject: PRJEB39696 BioSample: SAMEA7116352 Sequence Read Archive: ERR4407422 KEYWORDS WGS. SOURCE Desoria tigrina ORGANISM Desoria tigrina Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola; Entomobryomorpha; Isotomoidea; Isotomidae; Isotominae; Desoria. REFERENCE 1 (bases 1 to 142) AUTHORS Schneider,C. TITLE Direct Submission JOURNAL Submitted (29-APR-2021) LOEWE-TBG, Georg Voigt Str. 14-16, D-60325 Frankfurt am Main, Germany COMMENT The Desoria tigrina whole genome shotgun (WGS) project has the project accession CAJQTU000000000. This version of the project (01) has the accession number CAJQTU010000000, and consists of sequences CAJQTU010000001-CAJQTU010000142. Primary assembly assembled with Hifiasm from sequencing Data from a whole single specimen of Desoria tigrina. FEATURES Location/Qualifiers source 1..142 /organism="Desoria tigrina" /mol_type="genomic DNA" /isolation_source="Vegetal compost" /db_xref="taxon:370036" WGS CAJQTU010000001-CAJQTU010000142 // LOCUS CAJQTT010000000 79 rc DNA linear INV 07-MAY-2021 DEFINITION Sminthurides aquaticus, whole genome shotgun sequencing project. ACCESSION CAJQTT000000000 VERSION CAJQTT000000000.1 DBLINK BioProject: PRJEB39696 BioSample: SAMEA7116350 Sequence Read Archive: ERR4407379 KEYWORDS WGS. SOURCE Sminthurides aquaticus ORGANISM Sminthurides aquaticus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola; Symphypleona; Sminthurididae; Sminthurides. REFERENCE 1 (bases 1 to 79) AUTHORS Schneider,C. TITLE Direct Submission JOURNAL Submitted (29-APR-2021) LOEWE-TBG, Georg Voigt Str. 14-16, D-60325 Frankfurt am Main, Germany COMMENT The Sminthurides aquaticus whole genome shotgun (WGS) project has the project accession CAJQTT000000000. This version of the project (01) has the accession number CAJQTT010000000, and consists of sequences CAJQTT010000001-CAJQTT010000079. Primary assembly assembled with Hifiasm from sequencing Data from a whole single specimen of Sminthurides aquaticus. FEATURES Location/Qualifiers source 1..79 /organism="Sminthurides aquaticus" /mol_type="genomic DNA" /isolation_source="On the surface of a pond" /db_xref="taxon:281415" WGS CAJQTT010000001-CAJQTT010000079 // LOCUS JABSTO010000000 10445 rc DNA linear MAM 05-MAY-2021 DEFINITION Giraffa camelopardalis antiquorum isolate PLA01, whole genome shotgun sequencing project. ACCESSION JABSTO000000000 VERSION JABSTO000000000.1 DBLINK BioProject: PRJNA635165 BioSample: SAMN15027847 KEYWORDS WGS. SOURCE Giraffa camelopardalis antiquorum (Kordofan giraffe) ORGANISM Giraffa camelopardalis antiquorum Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Giraffidae; Giraffa. REFERENCE 1 (bases 1 to 10445) AUTHORS Coimbra,R.T.F., Winter,S., Kumar,V., Koepfli,K.-P., Gooley,R.M., Dobrynin,P., Fennessy,J. and Janke,A. TITLE Whole-genome analysis of giraffe supports four distinct species JOURNAL Curr Biol (2021) In press REFERENCE 2 (bases 1 to 10445) AUTHORS Coimbra,R.T.F. and Winter,S. TITLE Direct Submission JOURNAL Submitted (30-MAY-2020) Biodiversity and Climate Research Centre, Senckenberg Nature Research Society, Senckenberganlage 25, Frankfurt am Main, Hesse 60325, Germany COMMENT The Giraffa camelopardalis antiquorum whole genome shotgun (WGS) project has the project accession JABSTO000000000. This version of the project (01) has the accession number JABSTO010000000, and consists of sequences JABSTO010000001-JABSTO010010445. ##Genome-Assembly-Data-START## Assembly Method :: Supernova v. 2.1.1 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 30.0x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..10445 /organism="Giraffa camelopardalis antiquorum" /mol_type="genomic DNA" /isolate="PLA01" /sub_species="antiquorum" /db_xref="taxon:439324" /sex="male" /tissue_type="blood" /dev_stage="adult" WGS JABSTO010000001-JABSTO010010445 // LOCUS CAIGJR020000000 1086 rc DNA linear VRT 01-MAY-2021 DEFINITION Erithacus rubecula, whole genome shotgun sequencing project. ACCESSION CAIGJR000000000 VERSION CAIGJR000000000.2 DBLINK BioProject: PRJEB38658 BioSample: SAMEA4760689 KEYWORDS WGS. SOURCE Erithacus rubecula (European robin) ORGANISM Erithacus rubecula Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Turdidae; Erithacus. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (03-JUN-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 1086) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (03-MAR-2021) SC, Wellcome Sanger Institute, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT On May 1, 2021 this sequence version replaced CAIGJR000000000.1. The Erithacus rubecula whole genome shotgun (WGS) project has the project accession CAIGJR000000000. This version of the project (02) has the accession number CAIGJR020000000, and consists of sequences CAIGJR020000001-CAIGJR020001086. The assembly bEriRub2.2 is based on 41x PacBio data, 22x 10X Genomics Chromium data, and 42x Dovetail Hi-C data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig separation with purge_dups, 10X based scaffolding with scaff10x, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..1086 /organism="Erithacus rubecula" /mol_type="genomic DNA" /db_xref="taxon:37610" WGS CAIGJR020000001-CAIGJR020001086 // LOCUS JAALXR020000000 1217 rc DNA linear PRI 28-APR-2021 DEFINITION Callithrix jacchus isolate mCalJac1, whole genome shotgun sequencing project. ACCESSION JAALXR000000000 VERSION JAALXR000000000.2 DBLINK BioProject: PRJNA558087 BioSample: SAMN12368443 KEYWORDS WGS. SOURCE Callithrix jacchus (white-tufted-ear marmoset) ORGANISM Callithrix jacchus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix. REFERENCE 1 (bases 1 to 1217) AUTHORS Marcus,S., Zhou,Y., Formenti,G., Mountcastle,J., Haase,B., Balacco,J., Fabiszak,M., Rhie,A., Phillippy,A., Wood,J., Chow,W., Yang,C., Howe,K., Fedrigo,O., Freiwald,W., Jarvis,E.D. and Zhang,G. TITLE Callithrix jacchus (common marmoset) genome, mCalJac1, paternal haplotype, v2 JOURNAL Unpublished REFERENCE 2 (bases 1 to 1217) AUTHORS Marcus,S., Zhou,Y., Formenti,G., Mountcastle,J., Haase,B., Balacco,J., Fabiszak,M., Rhie,A., Phillippy,A., Wood,J., Chow,W., Yang,C., Howe,K., Fedrigo,O., Freiwald,W., Jarvis,E.D. and Zhang,G. TITLE Direct Submission JOURNAL Submitted (25-FEB-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA REFERENCE 3 (bases 1 to 1217) AUTHORS Marcus,S., Zhou,Y., Formenti,G., Mountcastle,J., Haase,B., Balacco,J., Fabiszak,M., Rhie,A., Phillippy,A., Wood,J., Chow,W., Yang,C., Howe,K., Fedrigo,O., Freiwald,W., Jarvis,E.D. and Zhang,G. TITLE Direct Submission JOURNAL Submitted (25-APR-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT On Apr 27, 2021 this sequence version replaced JAALXR000000000.1. The Callithrix jacchus whole genome shotgun (WGS) project has the project accession JAALXR000000000. This version of the project (02) has the accession number JAALXR020000000, and consists of sequences JAALXR020000001-JAALXR020001217. ##Genome-Assembly-Data-START## Assembly Date :: 25-APR-2021 Assembly Method :: TrioCanu v. 1.8; purge_dups v. 1.0.0; Scaff 10x v. 4.1.0; Bionano solve solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow polishing and gap filling v. smrtlink_6.0.0.47841; Longranger Align v. 2.2.2; Freebayes v. 1.3.1; gEVAL manual curation v. 2019-12-11; Zhang manual curation v. 2021-04-25; VGP assembly pipeline v. 1.6 Assembly Name :: mCalJac1.2.pat Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 63.44x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1217 /organism="Callithrix jacchus" /mol_type="genomic DNA" /isolate="mCalJac1" /db_xref="taxon:9483" /sex="male" /tissue_type="muscle" /dev_stage="juvenile" /country="USA: New York" /lat_lon="40.762676 N 73.955541 W" /collection_date="2018-06-12" /collected_by="Stephanie Marcus and Margaret Fabiszak" WGS JAALXR020000001-JAALXR020001217 WGS_SCAFLD CM021882-CM021904 // LOCUS JAALXP020000000 1234 rc DNA linear PRI 28-APR-2021 DEFINITION Callithrix jacchus isolate mCalJac1, whole genome shotgun sequencing project. ACCESSION JAALXP000000000 VERSION JAALXP000000000.2 DBLINK BioProject: PRJNA597600 BioSample: SAMN12368443 KEYWORDS WGS. SOURCE Callithrix jacchus (white-tufted-ear marmoset) ORGANISM Callithrix jacchus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix. REFERENCE 1 (bases 1 to 1234) AUTHORS Marcus,S., Zhou,Y., Formenti,G., Mountcastle,J., Haase,B., Balacco,J., Fabiszak,M., Rhie,A., Phillippy,A., Wood,J., Chow,W., Yang,C., Howe,K., Fedrigo,O., Freiwald,W., Jarvis,E.D. and Zhang,G. TITLE Callithrix jacchus (common marmoset) genome, mCalJac1, paternal haplotype + X, v2 JOURNAL Unpublished REFERENCE 2 (bases 1 to 1234) AUTHORS Marcus,S., Zhou,Y., Formenti,G., Mountcastle,J., Haase,B., Balacco,J., Fabiszak,M., Rhie,A., Phillippy,A., Wood,J., Chow,W., Yang,C., Howe,K., Fedrigo,O., Freiwald,W., Jarvis,E.D. and Zhang,G. TITLE Direct Submission JOURNAL Submitted (25-FEB-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA REFERENCE 3 (bases 1 to 1234) AUTHORS Marcus,S., Zhou,Y., Formenti,G., Mountcastle,J., Haase,B., Balacco,J., Fabiszak,M., Rhie,A., Phillippy,A., Wood,J., Chow,W., Yang,C., Howe,K., Fedrigo,O., Freiwald,W., Jarvis,E.D. and Zhang,G. TITLE Direct Submission JOURNAL Submitted (25-APR-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT On Apr 27, 2021 this sequence version replaced JAALXP000000000.1. The Callithrix jacchus whole genome shotgun (WGS) project has the project accession JAALXP000000000. This version of the project (02) has the accession number JAALXP020000000, and consists of sequences JAALXP020000001-JAALXP020001234. ##Genome-Assembly-Data-START## Assembly Date :: 25-APR-2021 Assembly Method :: TrioCanu v. 1.8; purge_dups v. 1.0.0; Scaff 10x v. 4.1.0; Bionano solve solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow polishing and gap filling v. smrtlink_6.0.0.47841; Longranger Align v. 2.2.2; Freebayes v. 1.3.1; gEVAL manual curation v. 2019-12-11; Zhang manual curation v. 2021-04-25; VGP assembly pipeline v. 1.6 Assembly Name :: mCalJa1.2.pat.X Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 63.44x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1234 /organism="Callithrix jacchus" /mol_type="genomic DNA" /isolate="mCalJac1" /db_xref="taxon:9483" /sex="male" /tissue_type="muscle" /dev_stage="juvenile" /country="USA: New York" /lat_lon="40.762676 N 73.955541 W" /collection_date="2018-06-12" /collected_by="Stephanie Marcus and Margaret Fabiszak" WGS JAALXP020000001-JAALXP020001234 WGS_SCAFLD CM021915-CM021938 WGS_SCAFLD CM021961 // LOCUS CAAJIE020000000 1400 rc DNA linear VRT 23-APR-2021 DEFINITION Salmo trutta, whole genome shotgun sequencing project. ACCESSION CAAJIE000000000 VERSION CAAJIE000000000.2 DBLINK BioProject: PRJEB32115 BioSample: SAMEA994732 KEYWORDS WGS. SOURCE Salmo trutta (river trout) ORGANISM Salmo trutta Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (10-APR-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 1400) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (13-APR-2021) SC, Wellcome Sanger Institute, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT On Apr 24, 2021 this sequence version replaced CAAJIE000000000.1. The Salmo trutta whole genome shotgun (WGS) project has the project accession CAAJIE000000000. This version of the project (02) has the accession number CAAJIE020000000, and consists of sequences CAAJIE020000001-CAAJIE020001400. The assembly fSalTru1.2 is based on 68x PacBio data and 70x coverage 10X Genomics Chromium data generated at the Wellcome Sanger Institute, as well as BioNano data generated at the Rockefeller University Vertebrate Genome Laboratory and 28x coverage Hi-C data generated by Arima Genomics. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with Purge Haplotigs, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. The mitochondrial assembly was produced at The Rockefeller University using mitoVGP. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named on the following basis: first they were assigned as metacentric versus acrocentric based on a Salmo trutta linkage map and synteny with the Salmo salar assembly GCA_000233375.4; numbers 1 to 11 are metacentric, numbers 12 to 40 are acrocentric, and within each of those two categories they are named in order of size. FEATURES Location/Qualifiers source 1..1400 /organism="Salmo trutta" /mol_type="genomic DNA" /db_xref="taxon:8032" WGS CAAJIE020000001-CAAJIE020001400 // LOCUS CAAJIB020000000 1310 rc DNA linear VRT 23-APR-2021 DEFINITION Rhinatrema bivittatum, whole genome shotgun sequencing project. ACCESSION CAAJIB000000000 VERSION CAAJIB000000000.2 DBLINK BioProject: PRJEB32111 BioSample: SAMEA104387956 KEYWORDS WGS. SOURCE Rhinatrema bivittatum (two-lined caecilian) ORGANISM Rhinatrema bivittatum Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Rhinatrematidae; Rhinatrema. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (10-APR-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 1310) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (12-APR-2021) SC, Wellcome Sanger Institute, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT On Apr 24, 2021 this sequence version replaced CAAJIB000000000.1. The Rhinatrema bivittatum whole genome shotgun (WGS) project has the project accession CAAJIB000000000. This version of the project (02) has the accession number CAAJIB020000000, and consists of sequences CAAJIB020000001-CAAJIB020001310. The assembly aRhiBiv1.2 is based on 43x PacBio data and 41x coverage 10X Genomics Chromium data generated at the Wellcome Sanger Institute, BioNano data generated by BioNano Genomics, and 39x coverage Hi-C data generated at the Wellcome Sanger Institute using a library created by Arima Genomics. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with Purge Haplotigs, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. The mitochondrial assembly was produced at The Rockefeller University using mitoVGP. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..1310 /organism="Rhinatrema bivittatum" /mol_type="genomic DNA" /db_xref="taxon:194408" WGS CAAJIB020000001-CAAJIB020001310 // LOCUS CABFKK020000000 1066 rc DNA linear VRT 23-APR-2021 DEFINITION Microcaecilia unicolor, whole genome shotgun sequencing project. ACCESSION CABFKK000000000 VERSION CABFKK000000000.2 DBLINK BioProject: PRJEB32737 BioSample: SAMEA104387962 KEYWORDS WGS. SOURCE Microcaecilia unicolor ORGANISM Microcaecilia unicolor Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Siphonopidae; Microcaecilia. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (28-MAY-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 1066) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (12-APR-2021) SC, Wellcome Sanger Institute, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT On Apr 24, 2021 this sequence version replaced CABFKK000000000.1. The Microcaecilia unicolor whole genome shotgun (WGS) project has the project accession CABFKK000000000. This version of the project (02) has the accession number CABFKK020000000, and consists of sequences CABFKK020000001-CABFKK020001066. The assembly aMicUni1.2 is based on 53x PacBio data, 52x coverage 10X Genomics Chromium data, BioNano data and 25x coverage Arima Hi-C data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with Purge Haplotigs, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. The mitochondrial assembly was produced at The Rockefeller University using mitoVGP. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..1066 /organism="Microcaecilia unicolor" /mol_type="genomic DNA" /db_xref="taxon:1415580" WGS CABFKK020000001-CABFKK020001066 // LOCUS OOHQ03000000 98 rc DNA linear VRT 23-APR-2021 DEFINITION Mastacembelus armatus, whole genome shotgun sequencing project. ACCESSION OOHQ00000000 VERSION OOHQ00000000.3 DBLINK BioProject: PRJEB25769 BioSample: SAMEA104026378 KEYWORDS WGS. SOURCE Mastacembelus armatus (zig-zag eel) ORGANISM Mastacembelus armatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Synbranchiformes; Mastacembelidae; Mastacembelus. REFERENCE 1 AUTHORS Datahose. TITLE Direct Submission JOURNAL Submitted (28-MAR-2018) SC, Wellcome Trust Sanger Institute, Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 98) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (13-APR-2021) SC, Wellcome Sanger Institute, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT On Apr 24, 2021 this sequence version replaced OOHQ00000000.2. The Mastacembelus armatus whole genome shotgun (WGS) project has the project accession OOHQ00000000. This version of the project (03) has the accession number OOHQ03000000, and consists of sequences OOHQ03000001-OOHQ03000098. The assembly fMasArm1.3 is based on 52x PacBio Sequel data, 99x coverage Illumina HiSeqX data from a 10X Genomics Chromium library generated at the Wellcome Sanger Institute, as well as two-enzyme BioNano Saphyr data generated at the Rockefeller University Vertebrate Genome Laboratory and 245x coverage HiSeqX data from a Hi-C library prepared by Arima Genomics. An initial PacBio assembly was made using Falcon-unzip and the primary contigs extended by merging with a miniasm assembly. The contigs were then scaffolded using the 10X data with scaff10x, and using synteny with Lates calcarifer (Asian seabass). After using the PacBio data to gap fill with PBJelly and polish with Arrow, the assembly was polished again using the 10X Illumina data and freebayes. Finally, the assembly was further manually curated using gEVAL to correct mis-joins and improve concordance with the BioNano and Arima Hi-C data. This was the fMasArm1.1 assembly. A updated fMasArm1.2 assembly has been further curated using the Hi-C data to separate out haplotigs, identify further breaks and joins and produce chromosomal-level scaffolds. The further updated fMasArm1.3 assembly includes a mitochondrial assembly produced at The Rockefeller University using mitoVGP. Chromosomes have been named by synteny to medaka. FEATURES Location/Qualifiers source 1..98 /organism="Mastacembelus armatus" /mol_type="genomic DNA" /db_xref="taxon:205130" WGS OOHQ03000001-OOHQ03000098 // LOCUS CAAHFC020000000 151 rc DNA linear VRT 23-APR-2021 DEFINITION Sparus aurata, whole genome shotgun sequencing project. ACCESSION CAAHFC000000000 VERSION CAAHFC000000000.2 DBLINK BioProject: PRJEB31901 BioSample: SAMEA104384835 KEYWORDS WGS. SOURCE Sparus aurata (gilthead seabream) ORGANISM Sparus aurata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Spariformes; Sparidae; Sparus. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (28-MAR-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 151) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (13-APR-2021) SC, Wellcome Sanger Institute, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT On Apr 24, 2021 this sequence version replaced CAAHFC000000000.1. The Sparus aurata whole genome shotgun (WGS) project has the project accession CAAHFC000000000. This version of the project (02) has the accession number CAAHFC020000000, and consists of sequences CAAHFC020000001-CAAHFC020000151. The assembly fSpaAur1.2 is based on 56x PacBio Sequel data, 62x coverage Illumina HiSeqX data from a 10X Genomics Chromium library generated at the Wellcome Sanger Institute, as well as 71x coverage HiSeqX data from a Hi-C library prepared by Arima Genomics. An initial PacBio assembly was made using Falcon-unzip, and retained haplotigs were identified using purge_haplotigs. The primary contigs were then scaffolded using the 10X data with scaff10x, then scaffolded further using the Hi-C data with SALSA2. Polishing and gap-filling of both the primary scaffolds and haplotigs was performed using the PacBio reads and Arrow, followed by two rounds of Illumina polishing using the 10X data and freebayes. The mitochondrial assembly was produced at The Rockefeller University using mitoVGP. Finally, the assembly was manually improved using gEVAL to correct mis-joins and improve concordance with the raw data. Chromosomes are named according to synteny with the GCA_003309015.1 assembly of Sparus aurata. FEATURES Location/Qualifiers source 1..151 /organism="Sparus aurata" /mol_type="genomic DNA" /db_xref="taxon:8175" WGS CAAHFC020000001-CAAHFC020000151 // LOCUS CABPRQ020000000 144 rc DNA linear VRT 23-APR-2021 DEFINITION Geotrypetes seraphini, whole genome shotgun sequencing project. ACCESSION CABPRQ000000000 VERSION CABPRQ000000000.2 DBLINK BioProject: PRJEB33992 BioSample: SAMEA104387963 KEYWORDS WGS. SOURCE Geotrypetes seraphini ORGANISM Geotrypetes seraphini Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Geotrypetes. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (13-AUG-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 144) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (12-APR-2021) SC, Wellcome Sanger Institute, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT On Apr 24, 2021 this sequence version replaced CABPRQ000000000.1. The Geotrypetes seraphini whole genome shotgun (WGS) project has the project accession CABPRQ000000000. This version of the project (02) has the accession number CABPRQ020000000, and consists of sequences CABPRQ020000001-CABPRQ020000144. The assembly aGeoSer1.2 is based on 67x PacBio data, 28x 10X Genomics Chromium data, BioNano data and 20x Dovetail Hi-C data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with Purge Haplotigs, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. The mitochondrial assembly was produced at The Rockefeller University using mitoVGP. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..144 /organism="Geotrypetes seraphini" /mol_type="genomic DNA" /db_xref="taxon:260995" WGS CABPRQ020000001-CABPRQ020000144 // LOCUS CAAHFO020000000 13 rc DNA linear VRT 23-APR-2021 DEFINITION Echeneis naucrates, whole genome shotgun sequencing project. ACCESSION CAAHFO000000000 VERSION CAAHFO000000000.2 DBLINK BioProject: PRJEB31992 BioSample: SAMEA4966390 KEYWORDS WGS. SOURCE Echeneis naucrates (live sharksucker) ORGANISM Echeneis naucrates Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Echeneidae; Echeneis. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (02-APR-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 13) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (13-APR-2021) SC, Wellcome Sanger Institute, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT On Apr 24, 2021 this sequence version replaced CAAHFO000000000.1. The Echeneis naucrates whole genome shotgun (WGS) project has the project accession CAAHFO000000000. This version of the project (02) has the accession number CAAHFO020000000, and consists of sequences CAAHFO020000001-CAAHFO020000013. The assembly fEcheNa1.2 is based on 62x PacBio data, 100x coverage 10X Genomics Chromium data, BioNano data and 112x coverage Dovetail Hi-C data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with Purge Haplotigs, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. The mitochondrial assembly was produced at The Rockefeller University using mitoVGP. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds are named by synteny to medaka. FEATURES Location/Qualifiers source 1..13 /organism="Echeneis naucrates" /mol_type="genomic DNA" /db_xref="taxon:173247" WGS CAAHFO020000001-CAAHFO020000013 // LOCUS OOHO03000000 27 rc DNA linear VRT 23-APR-2021 DEFINITION Anabas testudineus, whole genome shotgun sequencing project. ACCESSION OOHO00000000 VERSION OOHO00000000.3 DBLINK BioProject: PRJEB25768 BioSample: SAMEA104026376 KEYWORDS WGS. SOURCE Anabas testudineus (climbing perch) ORGANISM Anabas testudineus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Anabantiformes; Anabantoidei; Anabantidae; Anabas. REFERENCE 1 AUTHORS Datahose. TITLE Direct Submission JOURNAL Submitted (28-MAR-2018) SC, Wellcome Trust Sanger Institute, Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 27) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (12-APR-2021) SC, Wellcome Sanger Institute, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT On Apr 24, 2021 this sequence version replaced OOHO00000000.2. The Anabas testudineus whole genome shotgun (WGS) project has the project accession OOHO00000000. This version of the project (03) has the accession number OOHO03000000, and consists of sequences OOHO03000001-OOHO03000027. The assembly fAnaTes1.3 is based on 68x PacBio Sequel data, 114x coverage Illumina HiSeqX data from a 10X Genomics Chromium library generated at the Wellcome Sanger Institute as well as BioNano Saphyr DLE data generated at the Rockefeller University Vertebrate Genome Laboratory and 170x coverage HiSeqX data from a Hi-C library prepared by Arima Genomics. An initial PacBio assembly was made using Falcon-unzip. The primary contigs were then scaffolded using the 10X data with scaff10x and mis-joins broken using break10x. After using the PacBio data to gap fill with PBJelly and polish with Arrow, the assembly was polished again using the 10X Illumina data and freebayes. Finally, the assembly was further manually curated using gEVAL to correct mis-joins and improve concordance with the BioNano data and Arima Hi-C data. This was the initial fAnaTes1.1 assembly. An updated fAnaTes1.2 assembly has been further curated to removed duplicate haplotypes using purge_haplotigs and using the Hi-C data to identify further breaks and joins and produce chromosomal-level scaffolds. fAnaTes1.3 includes a mitochondrial assembly produced at The Rockefeller University using mitoVGP. Chromosomes have been named by synteny to medaka. FEATURES Location/Qualifiers source 1..27 /organism="Anabas testudineus" /mol_type="genomic DNA" /db_xref="taxon:64144" WGS OOHO03000001-OOHO03000027 // LOCUS CAAJGN030000000 105 rc DNA linear VRT 23-APR-2021 DEFINITION Takifugu rubripes, whole genome shotgun sequencing project. ACCESSION CAAJGN000000000 VERSION CAAJGN000000000.3 DBLINK BioProject: PRJEB31988 BioSample: SAMEA104384834 KEYWORDS WGS. SOURCE Takifugu rubripes (torafugu) ORGANISM Takifugu rubripes Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (05-APR-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 105) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (13-APR-2021) SC, Wellcome Sanger Institute, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT On Apr 24, 2021 this sequence version replaced CAAJGN000000000.2. The Takifugu rubripes whole genome shotgun (WGS) project has the project accession CAAJGN000000000. This version of the project (03) has the accession number CAAJGN030000000, and consists of sequences CAAJGN030000001-CAAJGN030000105. The assembly fTakRub1.3 is based on 83x PacBio Sequel data, 70x coverage Illumina HiSeqX data from a 10X Genomics Chromium library generated at the Wellcome Sanger Institute as well as BioNano Saphyr DLE data generated at the Rockefeller University Vertebrate Genome Laboratory and 51x coverage HiSeqX data from a Hi-C library prepared by Arima Genomics. An initial PacBio assembly was made using Falcon-unzip, and retained haplotigs were identified using purge_haplotigs. The primary contigs were then scaffolded using the 10X data with scaff10x, then scaffolded further with BioNano hybrid scaffolding and scaffolded further still using the Hi-C data with SALSA2. Polishing and gap-filling of both the primary scaffolds and haplotigs was performed using the PacBio reads and Arrow, followed by two rounds of Illumina polishing using the 10X data and freebayes. The mitochondrial assembly was produced at The Rockefeller University using mitoVGP. Finally, the assembly was manually improved using gEVAL to correct mis-joins and improve concordance with the BioNano and Hi-C data. Chromosome-scale scaffolds are named by synteny to the GCA_000180615.2 assembly of Takifugu rubripes. FEATURES Location/Qualifiers source 1..105 /organism="Takifugu rubripes" /mol_type="genomic DNA" /db_xref="taxon:31033" WGS CAAJGN030000001-CAAJGN030000105 // LOCUS JAGIYW010000000 2125 rc DNA linear VRT 15-APR-2021 DEFINITION Chelmon rostratus isolate fCheRos1, whole genome shotgun sequencing project. ACCESSION JAGIYW000000000 VERSION JAGIYW000000000.1 DBLINK BioProject: PRJNA561970 BioSample: SAMN12623620 KEYWORDS WGS. SOURCE Chelmon rostratus (copperband butterflyfish) ORGANISM Chelmon rostratus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Chaetodontiformes; Chaetodontidae; Chelmon. REFERENCE 1 (bases 1 to 2125) AUTHORS Myers,G., Venkatesh,B., Pippel,M., Winkler,S., Tracey,A., Chow,W., Howe,K., Formenti,G., Bista,I., Jarvis,R., Fedrigo,O. and Jarvis,E.D. TITLE Chelmon rostratus (copperband butterflyfish) genome, fCheRos1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 2125) AUTHORS Myers,G., Venkatesh,B., Pippel,M., Winkler,S., Tracey,A., Chow,W., Howe,K., Formenti,G., Bista,I., Jarvis,R., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (01-APR-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Chelmon rostratus whole genome shotgun (WGS) project has the project accession JAGIYW000000000. This version of the project (01) has the accession number JAGIYW010000000, and consists of sequences JAGIYW010000001-JAGIYW010002125. ##Genome-Assembly-Data-START## Assembly Date :: 24-MAR-2021 Assembly Method :: FALCON v. DX 2.0.2; FALCON-Unzip v. DX 8.0.1; purge_dups v. DX 19-08-10; scaff10X v. DX 2.0.3; bionano Solve v. DX 3.4.0; Salsa2 HiC v. DX 2.2.0; pbalign v. 0.3.2; pbgcpp v. 1.9.0; Longranger Align v. DX 2.2.2.1; freebayes v. DX 19-07-11; gEVAL manual curation v. 2021-03-24; VGP assembly pipeline v. 1.5 Assembly Name :: fCheRos1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 60.0x Sequencing Technology :: PacBio Sequel II CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..2125 /organism="Chelmon rostratus" /mol_type="genomic DNA" /isolate="fCheRos1" /db_xref="taxon:109905" /tissue_type="liver" /dev_stage="adult" /country="Singapore" /lat_lon="1.3521 N 103.8198 E" /collection_date="2018-06-20" /collected_by="Byrappa Venkatesh" WGS JAGIYW010000001-JAGIYW010002125 // LOCUS JAGIYS010000000 2393 rc DNA linear VRT 15-APR-2021 DEFINITION Toxotes jaculatrix isolate fToxJac2, whole genome shotgun sequencing project. ACCESSION JAGIYS000000000 VERSION JAGIYS000000000.1 DBLINK BioProject: PRJNA717045 BioSample: SAMN18445299 KEYWORDS WGS. SOURCE Toxotes jaculatrix (banded archerfish) ORGANISM Toxotes jaculatrix Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Toxotidae; Toxotes. REFERENCE 1 (bases 1 to 2393) AUTHORS Myers,G., Brown,T., Pippel,M., Winkler,S., Tracey,A., Sims,Y., Howe,K., Meyers,A., Venkatesh,B., Durbin,R. and Jarvis,E.D. TITLE Toxotes jaculatrix (banded archerfish) genome, fToxJac2, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 2393) AUTHORS Myers,G., Brown,T., Pippel,M., Winkler,S., Tracey,A., Sims,Y., Howe,K., Meyers,A., Venkatesh,B., Durbin,R. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (01-APR-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Toxotes jaculatrix whole genome shotgun (WGS) project has the project accession JAGIYS000000000. This version of the project (01) has the accession number JAGIYS010000000, and consists of sequences JAGIYS010000001-JAGIYS010002393. ##Genome-Assembly-Data-START## Assembly Date :: 05-MAR-2021 Assembly Method :: FALCON v. DX 2.0.2; FALCON-Unzip v. DX 8.0.1; purge_dups v. DX 19-08-10; scaff10X v. DX 2.0.3; bionano Solve v. DX 3.4.0; Salsa2 HiC v. DX 2.2.0; Assembly Polish v. SMRTLink7.0.1; Longranger Align v. DX 2.2.2.1; freebayes v. DX 19-07-11; gEVAL manual curation v. 2021-03-05; VGP assembly pipeline v. 1.6 Assembly Name :: fToxJac2.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 60.0x Sequencing Technology :: PacBio Sequel; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..2393 /organism="Toxotes jaculatrix" /mol_type="genomic DNA" /isolate="fToxJac2" /db_xref="taxon:941984" /tissue_type="liver, intestine, and heart used for different sequencing technologies" /dev_stage="adult" /country="Singapore" /lat_lon="1.3521 N 103.8198 E" /collection_date="2019-10-29" /collected_by="Byrappa Venkatesh" WGS JAGIYS010000001-JAGIYS010002393 // LOCUS JAGIYU010000000 1004 rc DNA linear VRT 15-APR-2021 DEFINITION Cuculus canorus isolate bCucCan1, whole genome shotgun sequencing project. ACCESSION JAGIYU000000000 VERSION JAGIYU000000000.1 DBLINK BioProject: PRJNA562016 BioSample: SAMN12629508 KEYWORDS WGS. SOURCE Cuculus canorus (common cuckoo) ORGANISM Cuculus canorus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Cuculiformes; Cuculidae; Cuculus. REFERENCE 1 (bases 1 to 1004) AUTHORS Wolf,J., Merondon,J., Haase,B., Formenti,G., Prochazka,P., Sulc,M., Tracey,A., Sims,Y., Howe,K., Mountcastle,J., Balacco,J., Fedrigo,O. and Jarvis,E.D. TITLE Cuculus canorus (Common cuckoo) genome, bCucCan1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 1004) AUTHORS Wolf,J., Merondon,J., Haase,B., Formenti,G., Prochazka,P., Sulc,M., Tracey,A., Sims,Y., Howe,K., Mountcastle,J., Balacco,J., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (01-APR-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Cuculus canorus whole genome shotgun (WGS) project has the project accession JAGIYU000000000. This version of the project (01) has the accession number JAGIYU010000000, and consists of sequences JAGIYU010000001-JAGIYU010001004. ##Genome-Assembly-Data-START## Assembly Date :: 30-MAR-2021 Assembly Method :: FALCON v. DX 2.0.2; FALCON-Unzip v. DX 8.0.1; purge_dups v. DX 19-08-10; scaff10X v. DX 2.0.3; bionano Solve v. DX 3.4.0; Salsa2 HiC v. DX 2.2.0; pbalign v. 0.3.2; pbgcpp v. 1.9.0; Longranger Align v. DX 2.2.2.1; freebayes v. DX 19-07-11; gEVAL manual curation v. 2021-03-30; VGP assembly pipeline v. 1.5 Assembly Name :: bCucCan1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 64.31x Sequencing Technology :: PacBio Sequel II CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1004 /organism="Cuculus canorus" /mol_type="genomic DNA" /isolate="bCucCan1" /db_xref="taxon:55661" /sex="female" /tissue_type="blood" /dev_stage="adult" /country="Czech Republic: Hodonin" /lat_lon="48.8557750 N 17.0677347 E" /collection_date="2018-05-08" /collected_by="Michal Sulc" WGS JAGIYU010000001-JAGIYU010001004 // LOCUS JAGIYV010000000 29 rc DNA linear VRT 15-APR-2021 DEFINITION Chelmon rostratus isolate fCheRos1, whole genome shotgun sequencing project. ACCESSION JAGIYV000000000 VERSION JAGIYV000000000.1 DBLINK BioProject: PRJNA561969 BioSample: SAMN12623620 KEYWORDS WGS. SOURCE Chelmon rostratus (copperband butterflyfish) ORGANISM Chelmon rostratus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Chaetodontiformes; Chaetodontidae; Chelmon. REFERENCE 1 (bases 1 to 29) AUTHORS Myers,G., Venkatesh,B., Pippel,M., Winkler,S., Tracey,A., Chow,W., Howe,K., Formenti,G., Bista,I., Durbin,R., Fedrigo,O. and Jarvis,E.D. TITLE Chelmon rostratus (copperband butterflyfish) genome, fCheRos1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 29) AUTHORS Myers,G., Venkatesh,B., Pippel,M., Winkler,S., Tracey,A., Chow,W., Howe,K., Formenti,G., Bista,I., Durbin,R., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (01-APR-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Chelmon rostratus whole genome shotgun (WGS) project has the project accession JAGIYV000000000. This version of the project (01) has the accession number JAGIYV010000000, and consists of sequences JAGIYV010000001-JAGIYV010000029. ##Genome-Assembly-Data-START## Assembly Date :: 24-MAR-2021 Assembly Method :: FALCON v. DX 2.0.2; FALCON-Unzip v. DX 8.0.1; purge_dups v. DX 19-08-10; scaff10X v. DX 2.0.3; bionano Solve v. DX 3.4.0; Salsa2 HiC v. DX 2.2.0; pbalign v. 0.3.2; pbgcpp v. 1.9.0; Longranger Align v. DX 2.2.2.1; freebayes v. DX 19-07-11; gEVAL manual curation v. 2021-03-24; VGP assembly pipeline v. 1.5 Assembly Name :: fCheRos1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 60.0x Sequencing Technology :: PacBio Sequel II CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..29 /organism="Chelmon rostratus" /mol_type="genomic DNA" /isolate="fCheRos1" /db_xref="taxon:109905" /tissue_type="liver" /dev_stage="adult" /country="Singapore" /lat_lon="1.3521 N 103.8198 E" /collection_date="2018-06-20" /collected_by="Byrappa Venkatesh" WGS JAGIYV010000001-JAGIYV010000029 WGS_SCAFLD CM030613-CM030636 WGS_SCAFLD CM030678 // LOCUS JAGIYT010000000 151 rc DNA linear VRT 15-APR-2021 DEFINITION Cuculus canorus isolate bCucCan1, whole genome shotgun sequencing project. ACCESSION JAGIYT000000000 VERSION JAGIYT000000000.1 DBLINK BioProject: PRJNA562015 BioSample: SAMN12629508 KEYWORDS WGS. SOURCE Cuculus canorus (common cuckoo) ORGANISM Cuculus canorus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Cuculiformes; Cuculidae; Cuculus. REFERENCE 1 (bases 1 to 151) AUTHORS Wolf,J., Merondon,J., Haase,B., Formenti,G., Prochazka,P., Sulc,M., Tracey,A., Sims,Y., Howe,K., Mountcastle,J., Balacco,J., Fedrigo,O. and Jarvis,E.D. TITLE Cuculus canorus (Common cuckoo) genome, bCucCan1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 151) AUTHORS Wolf,J., Merondon,J., Haase,B., Formenti,G., Prochazka,P., Sulc,M., Tracey,A., Sims,Y., Howe,K., Mountcastle,J., Balacco,J., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (01-APR-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Cuculus canorus whole genome shotgun (WGS) project has the project accession JAGIYT000000000. This version of the project (01) has the accession number JAGIYT010000000, and consists of sequences JAGIYT010000001-JAGIYT010000151. ##Genome-Assembly-Data-START## Assembly Date :: 30-MAR-2021 Assembly Method :: FALCON v. DX 2.0.2; FALCON-Unzip v. DX 8.0.1; purge_dups v. DX 19-08-10; scaff10X v. DX 2.0.3; bionano Solve v. DX 3.4.0; Salsa2 HiC v. DX 2.2.0; pbalign v. 0.3.2; pbgcpp v. 1.9.0; Longranger Align v. DX 2.2.2.1; freebayes v. DX 19-07-11; gEVAL manual curation v. 2021-03-30; VGP assembly pipeline v. 1.5 Assembly Name :: bCucCan1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 64.31x Sequencing Technology :: PacBio Sequel II CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..151 /organism="Cuculus canorus" /mol_type="genomic DNA" /isolate="bCucCan1" /db_xref="taxon:55661" /sex="female" /tissue_type="blood" /dev_stage="adult" /country="Czech Republic: Hodonin" /lat_lon="48.8557750 N 17.0677347 E" /collection_date="2018-05-08" /collected_by="Michal Sulc" WGS JAGIYT010000001-JAGIYT010000151 WGS_SCAFLD CM030637-CM030677 WGS_SCAFLD CM030679 // LOCUS JAGIYR010000000 96 rc DNA linear VRT 15-APR-2021 DEFINITION Toxotes jaculatrix isolate fToxJac2, whole genome shotgun sequencing project. ACCESSION JAGIYR000000000 VERSION JAGIYR000000000.1 DBLINK BioProject: PRJNA717046 BioSample: SAMN18445299 KEYWORDS WGS. SOURCE Toxotes jaculatrix (banded archerfish) ORGANISM Toxotes jaculatrix Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Toxotidae; Toxotes. REFERENCE 1 (bases 1 to 96) AUTHORS Myers,G., Brown,T., Pippel,M., Winkler,S., Tracey,A., Sims,Y., Howe,K., Meyers,A., Venkatesh,B., Durbin,R. and Jarvis,E.D. TITLE Toxotes jaculatrix (banded archerfish) genome, fToxJac2, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 96) AUTHORS Myers,G., Brown,T., Pippel,M., Winkler,S., Tracey,A., Sims,Y., Howe,K., Meyers,A., Venkatesh,B., Durbin,R. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (01-APR-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Toxotes jaculatrix whole genome shotgun (WGS) project has the project accession JAGIYR000000000. This version of the project (01) has the accession number JAGIYR010000000, and consists of sequences JAGIYR010000001-JAGIYR010000096. ##Genome-Assembly-Data-START## Assembly Date :: 05-MAR-2021 Assembly Method :: FALCON v. DX 2.0.2; FALCON-Unzip v. DX 8.0.1; purge_dups v. DX 19-08-10; scaff10X v. DX 2.0.3; bionano Solve v. DX 3.4.0; Salsa2 HiC v. DX 2.2.0; Assembly Polish v. SMRTLink7.0.1; Longranger Align v. DX 2.2.2.1; freebayes v. DX 19-07-11; gEVAL manual curation v. 2021-03-05; VGP assembly pipeline v. 1.6 Assembly Name :: fToxJac2.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 60.0x Sequencing Technology :: PacBio Sequel; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..96 /organism="Toxotes jaculatrix" /mol_type="genomic DNA" /isolate="fToxJac2" /db_xref="taxon:941984" /tissue_type="liver, intestine, and heart used for different sequencing technologies" /dev_stage="adult" /country="Singapore" /lat_lon="1.3521 N 103.8198 E" /collection_date="2019-10-29" /collected_by="Byrappa Venkatesh" WGS JAGIYR010000001-JAGIYR010000096 WGS_SCAFLD CM030680-CM030703 // LOCUS CABFKB020000000 3334 rc DNA linear VRT 14-APR-2021 DEFINITION Streptopelia turtur, whole genome shotgun sequencing project. ACCESSION CABFKB000000000 VERSION CABFKB000000000.2 DBLINK BioProject: PRJEB32725 BioSample: SAMEA994735 KEYWORDS WGS. SOURCE Streptopelia turtur ORGANISM Streptopelia turtur Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Columbiformes; Columbidae; Streptopelia. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (24-MAY-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 3334) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (06-APR-2021) SC, Wellcome Sanger Institute, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT On Apr 15, 2021 this sequence version replaced CABFKB000000000.1. The Streptopelia turtur whole genome shotgun (WGS) project has the project accession CABFKB000000000. This version of the project (02) has the accession number CABFKB020000000, and consists of sequences CABFKB020000001-CABFKB020003334. The assembly bStrTur1.2 is based on 44x PacBio data, 62x coverage 10X Genomics Chromium data, and BioNano data generated at the Wellcome Sanger Institute, and 106x coverage Hi-C data generated by Arima Genomics. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with Purge Haplotigs, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds are named by synteny to Gallus gallus. FEATURES Location/Qualifiers source 1..3334 /organism="Streptopelia turtur" /mol_type="genomic DNA" /db_xref="taxon:177155" WGS CABFKB020000001-CABFKB020003334 // LOCUS CAJQFE010000000 421 rc DNA linear INV 14-APR-2021 DEFINITION Leptidea sinapis, whole genome shotgun sequencing project. ACCESSION CAJQFE000000000 VERSION CAJQFE000000000.1 DBLINK BioProject: PRJEB43999 BioSample: SAMEA7523467 KEYWORDS WGS. SOURCE Leptidea sinapis ORGANISM Leptidea sinapis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Pieridae; Dismorphiinae; Leptidea. REFERENCE 1 (bases 1 to 421) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (29-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Leptidea sinapis whole genome shotgun (WGS) project has the project accession CAJQFE000000000. This version of the project (01) has the accession number CAJQFE010000000, and consists of sequences CAJQFE010000001-CAJQFE010000421. The assembly ilLepSina1.1 is based on 36x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..421 /organism="Leptidea sinapis" /mol_type="genomic DNA" /db_xref="taxon:189913" WGS CAJQFE010000001-CAJQFE010000421 // LOCUS CAJQFM010000000 1472 rc DNA linear INV 14-APR-2021 DEFINITION Glaucopsyche alexis, whole genome shotgun sequencing project. ACCESSION CAJQFM000000000 VERSION CAJQFM000000000.1 DBLINK BioProject: PRJEB43993 BioSample: SAMEA7524616 KEYWORDS WGS. SOURCE Glaucopsyche alexis (green-underside blue) ORGANISM Glaucopsyche alexis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Glaucopsyche. REFERENCE 1 (bases 1 to 1472) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (29-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Glaucopsyche alexis whole genome shotgun (WGS) project has the project accession CAJQFM000000000. This version of the project (01) has the accession number CAJQFM010000000, and consists of sequences CAJQFM010000001-CAJQFM010001472. The assembly ilGlaAlex1.1 is based on 43x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..1472 /organism="Glaucopsyche alexis" /mol_type="genomic DNA" /db_xref="taxon:203781" WGS CAJQFM010000001-CAJQFM010001472 // LOCUS CAJQFX010000000 1048 rc DNA linear INV 14-APR-2021 DEFINITION Ochropleura plecta, whole genome shotgun sequencing project. ACCESSION CAJQFX000000000 VERSION CAJQFX000000000.1 DBLINK BioProject: PRJEB44050 BioSample: SAMEA7520524 KEYWORDS WGS. SOURCE Ochropleura plecta ORGANISM Ochropleura plecta Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Noctuinae; Noctuini; Ochropleura. REFERENCE 1 (bases 1 to 1048) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (30-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Ochropleura plecta whole genome shotgun (WGS) project has the project accession CAJQFX000000000. This version of the project (01) has the accession number CAJQFX010000000, and consists of sequences CAJQFX010000001-CAJQFX010001048. The assembly ilOchPlec1.1 is based on 46x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..1048 /organism="Ochropleura plecta" /mol_type="genomic DNA" /db_xref="taxon:320037" WGS CAJQFX010000001-CAJQFX010001048 // LOCUS CAJQGC010000000 486 rc DNA linear INV 14-APR-2021 DEFINITION Schrankia costaestrigalis, whole genome shotgun sequencing project. ACCESSION CAJQGC000000000 VERSION CAJQGC000000000.1 DBLINK BioProject: PRJEB44054 BioSample: SAMEA7520193 KEYWORDS WGS. SOURCE Schrankia costaestrigalis (pinion-streaked snout moth) ORGANISM Schrankia costaestrigalis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Erebidae; Hypeninae; Schrankia. REFERENCE 1 (bases 1 to 486) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (30-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Schrankia costaestrigalis whole genome shotgun (WGS) project has the project accession CAJQGC000000000. This version of the project (01) has the accession number CAJQGC010000000, and consists of sequences CAJQGC010000001-CAJQGC010000486. The assembly ilSchCost1.1 is based on 38x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..486 /organism="Schrankia costaestrigalis" /mol_type="genomic DNA" /db_xref="taxon:411963" WGS CAJQGC010000001-CAJQGC010000486 // LOCUS CAJQFW010000000 432 rc DNA linear INV 14-APR-2021 DEFINITION Chrysoperla carnea, whole genome shotgun sequencing project. ACCESSION CAJQFW000000000 VERSION CAJQFW000000000.1 DBLINK BioProject: PRJEB44057 BioSample: SAMEA7520372 KEYWORDS WGS. SOURCE Chrysoperla carnea ORGANISM Chrysoperla carnea Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Neuroptera; Hemerobiiformia; Chrysopidae; Chrysopinae; Chrysoperla. REFERENCE 1 (bases 1 to 432) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (30-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Chrysoperla carnea whole genome shotgun (WGS) project has the project accession CAJQFW000000000. This version of the project (01) has the accession number CAJQFW010000000, and consists of sequences CAJQFW010000001-CAJQFW010000432. The assembly inChrCarn1.1 is based on 40x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..432 /organism="Chrysoperla carnea" /mol_type="genomic DNA" /db_xref="taxon:189513" WGS CAJQFW010000001-CAJQFW010000432 // LOCUS CAJQFH010000000 1029 rc DNA linear INV 14-APR-2021 DEFINITION Erannis defoliaria, whole genome shotgun sequencing project. ACCESSION CAJQFH000000000 VERSION CAJQFH000000000.1 DBLINK BioProject: PRJEB43989 BioSample: SAMEA7520367 KEYWORDS WGS. SOURCE Erannis defoliaria ORGANISM Erannis defoliaria Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Ennominae; Erannis. REFERENCE 1 (bases 1 to 1029) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (29-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Erannis defoliaria whole genome shotgun (WGS) project has the project accession CAJQFH000000000. This version of the project (01) has the accession number CAJQFH010000000, and consists of sequences CAJQFH010000001-CAJQFH010001029. The assembly ilEraDefo1.1 is based on 23x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..1029 /organism="Erannis defoliaria" /mol_type="genomic DNA" /db_xref="taxon:104474" WGS CAJQFH010000001-CAJQFH010001029 // LOCUS CAJQFY010000000 1277 rc DNA linear INV 14-APR-2021 DEFINITION Clostera curtula, whole genome shotgun sequencing project. ACCESSION CAJQFY000000000 VERSION CAJQFY000000000.1 DBLINK BioProject: PRJEB43987 BioSample: SAMEA7520526 KEYWORDS WGS. SOURCE Clostera curtula ORGANISM Clostera curtula Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Notodontidae; Pygaerinae; Clostera. REFERENCE 1 (bases 1 to 1277) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (30-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Clostera curtula whole genome shotgun (WGS) project has the project accession CAJQFY000000000. This version of the project (01) has the accession number CAJQFY010000000, and consists of sequences CAJQFY010000001-CAJQFY010001277. The assembly ilCloCurt1.1 is based on 24x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..1277 /organism="Clostera curtula" /mol_type="genomic DNA" /db_xref="taxon:987902" WGS CAJQFY010000001-CAJQFY010001277 // LOCUS CAJQEY010000000 451 rc DNA linear INV 14-APR-2021 DEFINITION Fabriciana adippe, whole genome shotgun sequencing project. ACCESSION CAJQEY000000000 VERSION CAJQEY000000000.1 DBLINK BioProject: PRJEB43991 BioSample: SAMEA7523308 KEYWORDS WGS. SOURCE Fabriciana adippe (high brown fritillary) ORGANISM Fabriciana adippe Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Argynnini; Fabriciana. REFERENCE 1 (bases 1 to 451) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (29-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Fabriciana adippe whole genome shotgun (WGS) project has the project accession CAJQEY000000000. This version of the project (01) has the accession number CAJQEY010000000, and consists of sequences CAJQEY010000001-CAJQEY010000451. The assembly ilFabAdip1.1 is based on 49x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..451 /organism="Fabriciana adippe" /mol_type="genomic DNA" /db_xref="taxon:405009" WGS CAJQEY010000001-CAJQEY010000451 // LOCUS CAJQFF010000000 568 rc DNA linear INV 14-APR-2021 DEFINITION Biston betularia, whole genome shotgun sequencing project. ACCESSION CAJQFF000000000 VERSION CAJQFF000000000.1 DBLINK BioProject: PRJEB43985 BioSample: SAMEA7520512 KEYWORDS WGS. SOURCE Biston betularia (pepper-and-salt moth) ORGANISM Biston betularia Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Ennominae; Biston. REFERENCE 1 (bases 1 to 568) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (29-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Biston betularia whole genome shotgun (WGS) project has the project accession CAJQFF000000000. This version of the project (01) has the accession number CAJQFF010000000, and consists of sequences CAJQFF010000001-CAJQFF010000568. The assembly ilBisBetu1.1 is based on 27x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..568 /organism="Biston betularia" /mol_type="genomic DNA" /db_xref="taxon:82595" WGS CAJQFF010000001-CAJQFF010000568 // LOCUS CAJQEV010000000 548 rc DNA linear INV 14-APR-2021 DEFINITION Plebejus argus, whole genome shotgun sequencing project. ACCESSION CAJQEV000000000 VERSION CAJQEV000000000.1 DBLINK BioProject: PRJEB44006 BioSample: SAMEA7523294 KEYWORDS WGS. SOURCE Plebejus argus ORGANISM Plebejus argus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Plebejus. REFERENCE 1 (bases 1 to 548) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (29-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Plebejus argus whole genome shotgun (WGS) project has the project accession CAJQEV000000000. This version of the project (01) has the accession number CAJQEV010000000, and consists of sequences CAJQEV010000001-CAJQEV010000548. The assembly ilPleArgu1.1 is based on 23x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..548 /organism="Plebejus argus" /mol_type="genomic DNA" /db_xref="taxon:242267" WGS CAJQEV010000001-CAJQEV010000548 // LOCUS CAJQFN010000000 234 rc DNA linear INV 14-APR-2021 DEFINITION Anthocharis cardamines, whole genome shotgun sequencing project. ACCESSION CAJQFN000000000 VERSION CAJQFN000000000.1 DBLINK BioProject: PRJEB43983 BioSample: SAMEA7523110 KEYWORDS WGS. SOURCE Anthocharis cardamines (orange tip) ORGANISM Anthocharis cardamines Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Pieridae; Pierinae; Anthocharis. REFERENCE 1 (bases 1 to 234) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (29-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Anthocharis cardamines whole genome shotgun (WGS) project has the project accession CAJQFN000000000. This version of the project (01) has the accession number CAJQFN010000000, and consists of sequences CAJQFN010000001-CAJQFN010000234. The assembly ilAntCard3.1 is based on 69x PacBio data, 10X Genomics Chromium data, and Qiagen Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..234 /organism="Anthocharis cardamines" /mol_type="genomic DNA" /db_xref="taxon:227532" WGS CAJQFN010000001-CAJQFN010000234 // LOCUS CAJQFU010000000 105 rc DNA linear INV 14-APR-2021 DEFINITION Pieris napi, whole genome shotgun sequencing project. ACCESSION CAJQFU000000000 VERSION CAJQFU000000000.1 DBLINK BioProject: PRJEB44053 BioSample: SAMEA7523287 KEYWORDS WGS. SOURCE Pieris napi ORGANISM Pieris napi Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Pieridae; Pierinae; Pieris. REFERENCE 1 (bases 1 to 105) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (30-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Pieris napi whole genome shotgun (WGS) project has the project accession CAJQFU000000000. This version of the project (01) has the accession number CAJQFU010000000, and consists of sequences CAJQFU010000001-CAJQFU010000105. The assembly ilPieNapi1.1 is based on 60x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..105 /organism="Pieris napi" /mol_type="genomic DNA" /db_xref="taxon:78633" WGS CAJQFU010000001-CAJQFU010000105 // LOCUS CAJQFB010000000 1619 rc DNA linear INV 14-APR-2021 DEFINITION Pheosia gnoma, whole genome shotgun sequencing project. ACCESSION CAJQFB000000000 VERSION CAJQFB000000000.1 DBLINK BioProject: PRJEB44004 BioSample: SAMEA7520513 KEYWORDS WGS. SOURCE Pheosia gnoma ORGANISM Pheosia gnoma Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Notodontidae; Notodontinae; Pheosia. REFERENCE 1 (bases 1 to 1619) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (29-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Pheosia gnoma whole genome shotgun (WGS) project has the project accession CAJQFB000000000. This version of the project (01) has the accession number CAJQFB010000000, and consists of sequences CAJQFB010000001-CAJQFB010001619. The assembly ilPheGnom1.1 is based on 60x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..1619 /organism="Pheosia gnoma" /mol_type="genomic DNA" /db_xref="taxon:988018" WGS CAJQFB010000001-CAJQFB010001619 // LOCUS CAJQET010000000 507 rc DNA linear INV 14-APR-2021 DEFINITION Vespula vulgaris, whole genome shotgun sequencing project. ACCESSION CAJQET000000000 VERSION CAJQET000000000.1 DBLINK BioProject: PRJEB44007 BioSample: SAMEA7520502 KEYWORDS WGS. SOURCE Vespula vulgaris ORGANISM Vespula vulgaris Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Vespoidea; Vespidae; Vespinae; Vespula. REFERENCE 1 (bases 1 to 507) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (29-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Vespula vulgaris whole genome shotgun (WGS) project has the project accession CAJQET000000000. This version of the project (01) has the accession number CAJQET010000000, and consists of sequences CAJQET010000001-CAJQET010000507. The assembly iyVesVulg1.1 is based on 87x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..507 /organism="Vespula vulgaris" /mol_type="genomic DNA" /db_xref="taxon:7454" WGS CAJQET010000001-CAJQET010000507 // LOCUS CAJQGA010000000 331 rc DNA linear INV 14-APR-2021 DEFINITION Chrysoperla carnea, whole genome shotgun sequencing project. ACCESSION CAJQGA000000000 VERSION CAJQGA000000000.1 DBLINK BioProject: PRJEB44056 BioSample: SAMEA7520372 KEYWORDS WGS. SOURCE Chrysoperla carnea ORGANISM Chrysoperla carnea Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Neuroptera; Hemerobiiformia; Chrysopidae; Chrysopinae; Chrysoperla. REFERENCE 1 (bases 1 to 331) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (30-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Chrysoperla carnea whole genome shotgun (WGS) project has the project accession CAJQGA000000000. This version of the project (01) has the accession number CAJQGA010000000, and consists of sequences CAJQGA010000001-CAJQGA010000331. The assembly inChrCarn1.1 is based on 40x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..331 /organism="Chrysoperla carnea" /mol_type="genomic DNA" /db_xref="taxon:189513" WGS CAJQGA010000001-CAJQGA010000331 // LOCUS CAJQEZ010000000 23 rc DNA linear INV 14-APR-2021 DEFINITION Anthocharis cardamines, whole genome shotgun sequencing project. ACCESSION CAJQEZ000000000 VERSION CAJQEZ000000000.1 DBLINK BioProject: PRJEB43982 BioSample: SAMEA7523110 KEYWORDS WGS. SOURCE Anthocharis cardamines (orange tip) ORGANISM Anthocharis cardamines Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Pieridae; Pierinae; Anthocharis. REFERENCE 1 (bases 1 to 23) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (29-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Anthocharis cardamines whole genome shotgun (WGS) project has the project accession CAJQEZ000000000. This version of the project (01) has the accession number CAJQEZ010000000, and consists of sequences CAJQEZ010000001-CAJQEZ010000023. The assembly ilAntCard3.1 is based on 69x PacBio data, 10X Genomics Chromium data, and Qiagen Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..23 /organism="Anthocharis cardamines" /mol_type="genomic DNA" /db_xref="taxon:227532" WGS CAJQEZ010000001-CAJQEZ010000023 // LOCUS CAJQFA010000000 65 rc DNA linear INV 14-APR-2021 DEFINITION Fabriciana adippe, whole genome shotgun sequencing project. ACCESSION CAJQFA000000000 VERSION CAJQFA000000000.1 DBLINK BioProject: PRJEB43990 BioSample: SAMEA7523308 KEYWORDS WGS. SOURCE Fabriciana adippe (high brown fritillary) ORGANISM Fabriciana adippe Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Argynnini; Fabriciana. REFERENCE 1 (bases 1 to 65) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (29-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Fabriciana adippe whole genome shotgun (WGS) project has the project accession CAJQFA000000000. This version of the project (01) has the accession number CAJQFA010000000, and consists of sequences CAJQFA010000001-CAJQFA010000065. The assembly ilFabAdip1.1 is based on 49x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..65 /organism="Fabriciana adippe" /mol_type="genomic DNA" /db_xref="taxon:405009" WGS CAJQFA010000001-CAJQFA010000065 // LOCUS CADCXM020000000 58 rc DNA linear INV 14-APR-2021 DEFINITION Maniola hyperantus, whole genome shotgun sequencing project. ACCESSION CADCXM000000000 VERSION CADCXM000000000.2 DBLINK BioProject: PRJEB36756 BioSample: SAMEA994723 KEYWORDS WGS. SOURCE Maniola hyperantus (ringlet) ORGANISM Maniola hyperantus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Satyrinae; Satyrini; Maniolina; Maniola; Aphantopus. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (14-FEB-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 58) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (06-APR-2021) SC, Wellcome Sanger Institute, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT On Apr 15, 2021 this sequence version replaced CADCXM000000000.1. The Maniola hyperantus whole genome shotgun (WGS) project has the project accession CADCXM000000000. This version of the project (02) has the accession number CADCXM020000000, and consists of sequences CADCXM020000001-CADCXM020000058. The assembly iAphHyp1.2 is based on 50x PacBio data, 61x 10X Genomics Chromium data, and 81x Arima Hi-C data from a separate individual iAphHyp4 generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with purge_dups, 10X based scaffolding with scaff10x, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..58 /organism="Maniola hyperantus" /mol_type="genomic DNA" /db_xref="taxon:2795564" WGS CADCXM020000001-CADCXM020000058 // LOCUS CAJQEX010000000 15 rc DNA linear INV 14-APR-2021 DEFINITION Plebejus argus, whole genome shotgun sequencing project. ACCESSION CAJQEX000000000 VERSION CAJQEX000000000.1 DBLINK BioProject: PRJEB44005 BioSample: SAMEA7523294 KEYWORDS WGS. SOURCE Plebejus argus ORGANISM Plebejus argus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Plebejus. REFERENCE 1 (bases 1 to 15) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (29-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Plebejus argus whole genome shotgun (WGS) project has the project accession CAJQEX000000000. This version of the project (01) has the accession number CAJQEX010000000, and consists of sequences CAJQEX010000001-CAJQEX010000015. The assembly ilPleArgu1.1 is based on 23x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..15 /organism="Plebejus argus" /mol_type="genomic DNA" /db_xref="taxon:242267" WGS CAJQEX010000001-CAJQEX010000015 // LOCUS CAJQGB010000000 103 rc DNA linear INV 14-APR-2021 DEFINITION Autographa pulchrina, whole genome shotgun sequencing project. ACCESSION CAJQGB000000000 VERSION CAJQGB000000000.1 DBLINK BioProject: PRJEB44048 BioSample: SAMEA7520527 KEYWORDS WGS. SOURCE Autographa pulchrina ORGANISM Autographa pulchrina Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Autographa. REFERENCE 1 (bases 1 to 103) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (30-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Autographa pulchrina whole genome shotgun (WGS) project has the project accession CAJQGB000000000. This version of the project (01) has the accession number CAJQGB010000000, and consists of sequences CAJQGB010000001-CAJQGB010000103. The assembly ilAutPulc1.1 is based on 47x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..103 /organism="Autographa pulchrina" /mol_type="genomic DNA" /db_xref="taxon:987893" WGS CAJQGB010000001-CAJQGB010000103 // LOCUS CAJQFT010000000 16 rc DNA linear INV 14-APR-2021 DEFINITION Pieris napi, whole genome shotgun sequencing project. ACCESSION CAJQFT000000000 VERSION CAJQFT000000000.1 DBLINK BioProject: PRJEB44052 BioSample: SAMEA7523287 KEYWORDS WGS. SOURCE Pieris napi ORGANISM Pieris napi Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Pieridae; Pierinae; Pieris. REFERENCE 1 (bases 1 to 16) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (30-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Pieris napi whole genome shotgun (WGS) project has the project accession CAJQFT000000000. This version of the project (01) has the accession number CAJQFT010000000, and consists of sequences CAJQFT010000001-CAJQFT010000016. The assembly ilPieNapi1.1 is based on 60x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..16 /organism="Pieris napi" /mol_type="genomic DNA" /db_xref="taxon:78633" WGS CAJQFT010000001-CAJQFT010000016 // LOCUS CAJQFG010000000 34 rc DNA linear INV 14-APR-2021 DEFINITION Glaucopsyche alexis, whole genome shotgun sequencing project. ACCESSION CAJQFG000000000 VERSION CAJQFG000000000.1 DBLINK BioProject: PRJEB43992 BioSample: SAMEA7524616 KEYWORDS WGS. SOURCE Glaucopsyche alexis (green-underside blue) ORGANISM Glaucopsyche alexis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Glaucopsyche. REFERENCE 1 (bases 1 to 34) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (29-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Glaucopsyche alexis whole genome shotgun (WGS) project has the project accession CAJQFG000000000. This version of the project (01) has the accession number CAJQFG010000000, and consists of sequences CAJQFG010000001-CAJQFG010000034. The assembly ilGlaAlex1.1 is based on 43x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..34 /organism="Glaucopsyche alexis" /mol_type="genomic DNA" /db_xref="taxon:203781" WGS CAJQFG010000001-CAJQFG010000034 // LOCUS CAJQFS010000000 2 rc DNA linear INV 14-APR-2021 DEFINITION Vespula vulgaris, whole genome shotgun sequencing project. ACCESSION CAJQFS000000000 VERSION CAJQFS000000000.1 DBLINK BioProject: PRJEB44008 BioSample: SAMEA7520502 KEYWORDS WGS. SOURCE Vespula vulgaris ORGANISM Vespula vulgaris Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Vespoidea; Vespidae; Vespinae; Vespula. REFERENCE 1 (bases 1 to 2) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (30-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Vespula vulgaris whole genome shotgun (WGS) project has the project accession CAJQFS000000000. This version of the project (01) has the accession number CAJQFS010000000, and consists of sequences CAJQFS010000001-CAJQFS010000002. The assembly iyVesVulg1.1 is based on 87x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..2 /organism="Vespula vulgaris" /mol_type="genomic DNA" /db_xref="taxon:7454" WGS CAJQFS010000001-CAJQFS010000002 // LOCUS CAJQGD010000000 14 rc DNA linear INV 14-APR-2021 DEFINITION Schrankia costaestrigalis, whole genome shotgun sequencing project. ACCESSION CAJQGD000000000 VERSION CAJQGD000000000.1 DBLINK BioProject: PRJEB44055 BioSample: SAMEA7520193 KEYWORDS WGS. SOURCE Schrankia costaestrigalis (pinion-streaked snout moth) ORGANISM Schrankia costaestrigalis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Erebidae; Hypeninae; Schrankia. REFERENCE 1 (bases 1 to 14) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (30-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Schrankia costaestrigalis whole genome shotgun (WGS) project has the project accession CAJQGD000000000. This version of the project (01) has the accession number CAJQGD010000000, and consists of sequences CAJQGD010000001-CAJQGD010000014. The assembly ilSchCost1.1 is based on 38x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..14 /organism="Schrankia costaestrigalis" /mol_type="genomic DNA" /db_xref="taxon:411963" WGS CAJQGD010000001-CAJQGD010000014 // LOCUS CAJQFK010000000 8 rc DNA linear INV 14-APR-2021 DEFINITION Erannis defoliaria, whole genome shotgun sequencing project. ACCESSION CAJQFK000000000 VERSION CAJQFK000000000.1 DBLINK BioProject: PRJEB43988 BioSample: SAMEA7520367 KEYWORDS WGS. SOURCE Erannis defoliaria ORGANISM Erannis defoliaria Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Ennominae; Erannis. REFERENCE 1 (bases 1 to 8) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (29-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Erannis defoliaria whole genome shotgun (WGS) project has the project accession CAJQFK000000000. This version of the project (01) has the accession number CAJQFK010000000, and consists of sequences CAJQFK010000001-CAJQFK010000008. The assembly ilEraDefo1.1 is based on 23x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..8 /organism="Erannis defoliaria" /mol_type="genomic DNA" /db_xref="taxon:104474" WGS CAJQFK010000001-CAJQFK010000008 // LOCUS CAJQEW010000000 7 rc DNA linear INV 14-APR-2021 DEFINITION Pheosia gnoma, whole genome shotgun sequencing project. ACCESSION CAJQEW000000000 VERSION CAJQEW000000000.1 DBLINK BioProject: PRJEB44003 BioSample: SAMEA7520513 KEYWORDS WGS. SOURCE Pheosia gnoma ORGANISM Pheosia gnoma Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Notodontidae; Notodontinae; Pheosia. REFERENCE 1 (bases 1 to 7) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (29-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Pheosia gnoma whole genome shotgun (WGS) project has the project accession CAJQEW000000000. This version of the project (01) has the accession number CAJQEW010000000, and consists of sequences CAJQEW010000001-CAJQEW010000007. The assembly ilPheGnom1.1 is based on 60x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..7 /organism="Pheosia gnoma" /mol_type="genomic DNA" /db_xref="taxon:988018" WGS CAJQEW010000001-CAJQEW010000007 // LOCUS CAJQFZ010000000 2 rc DNA linear INV 14-APR-2021 DEFINITION Ochropleura plecta, whole genome shotgun sequencing project. ACCESSION CAJQFZ000000000 VERSION CAJQFZ000000000.1 DBLINK BioProject: PRJEB44051 BioSample: SAMEA7520524 KEYWORDS WGS. SOURCE Ochropleura plecta ORGANISM Ochropleura plecta Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Noctuinae; Noctuini; Ochropleura. REFERENCE 1 (bases 1 to 2) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (30-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Ochropleura plecta whole genome shotgun (WGS) project has the project accession CAJQFZ000000000. This version of the project (01) has the accession number CAJQFZ010000000, and consists of sequences CAJQFZ010000001-CAJQFZ010000002. The assembly ilOchPlec1.1 is based on 46x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..2 /organism="Ochropleura plecta" /mol_type="genomic DNA" /db_xref="taxon:320037" WGS CAJQFZ010000001-CAJQFZ010000002 // LOCUS CAJQFP010000000 1 rc DNA linear INV 14-APR-2021 DEFINITION Leptidea sinapis, whole genome shotgun sequencing project. ACCESSION CAJQFP000000000 VERSION CAJQFP000000000.1 DBLINK BioProject: PRJEB43998 BioSample: SAMEA7523467 KEYWORDS WGS. SOURCE Leptidea sinapis ORGANISM Leptidea sinapis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Pieridae; Dismorphiinae; Leptidea. REFERENCE 1 (bases 1 to 1) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (29-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Leptidea sinapis whole genome shotgun (WGS) project has the project accession CAJQFP000000000. This version of the project (01) has the accession number CAJQFP010000000, and consists of sequence CAJQFP010000001. The assembly ilLepSina1.1 is based on 36x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1 /organism="Leptidea sinapis" /mol_type="genomic DNA" /db_xref="taxon:189913" /note="contig: scaffold_59_ctg1" WGS CAJQFP010000001 // LOCUS CAJQEU010000000 1 rc DNA linear INV 14-APR-2021 DEFINITION Biston betularia, whole genome shotgun sequencing project. ACCESSION CAJQEU000000000 VERSION CAJQEU000000000.1 DBLINK BioProject: PRJEB43984 BioSample: SAMEA7520512 KEYWORDS WGS. SOURCE Biston betularia (pepper-and-salt moth) ORGANISM Biston betularia Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Ennominae; Biston. REFERENCE 1 (bases 1 to 1) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (29-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Biston betularia whole genome shotgun (WGS) project has the project accession CAJQEU000000000. This version of the project (01) has the accession number CAJQEU010000000, and consists of sequence CAJQEU010000001. The assembly ilBisBetu1.1 is based on 27x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1 /organism="Biston betularia" /mol_type="genomic DNA" /db_xref="taxon:82595" /note="contig: scaffold_39_ctg1" WGS CAJQEU010000001 // LOCUS CAJQFC010000000 938 rc DNA linear INV 14-APR-2021 DEFINITION Ochlodes sylvanus, whole genome shotgun sequencing project. ACCESSION CAJQFC000000000 VERSION CAJQFC000000000.1 DBLINK BioProject: PRJEB44001 BioSample: SAMEA7523138 KEYWORDS WGS. SOURCE Ochlodes sylvanus ORGANISM Ochlodes sylvanus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Hesperioidea; Hesperiidae; Hesperiinae; Hesperiini; Ochlodes. REFERENCE 1 (bases 1 to 938) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (29-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Ochlodes sylvanus whole genome shotgun (WGS) project has the project accession CAJQFC000000000. This version of the project (01) has the accession number CAJQFC010000000, and consists of sequences CAJQFC010000001-CAJQFC010000938. The assembly ilOchSylv3.1 is based on 23x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..938 /organism="Ochlodes sylvanus" /mol_type="genomic DNA" /db_xref="taxon:876063" WGS CAJQFC010000001-CAJQFC010000938 // LOCUS CAJQFI010000000 195 rc DNA linear INV 14-APR-2021 DEFINITION Hesperia comma, whole genome shotgun sequencing project. ACCESSION CAJQFI000000000 VERSION CAJQFI000000000.1 DBLINK BioProject: PRJEB43997 BioSample: SAMEA7523119 KEYWORDS WGS. SOURCE Hesperia comma (common branded skipper) ORGANISM Hesperia comma Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Hesperioidea; Hesperiidae; Hesperiinae; Hesperiini; Hesperia. REFERENCE 1 (bases 1 to 195) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (29-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Hesperia comma whole genome shotgun (WGS) project has the project accession CAJQFI000000000. This version of the project (01) has the accession number CAJQFI010000000, and consists of sequences CAJQFI010000001-CAJQFI010000195. The assembly ilHesComm1.1 is based on 28x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..195 /organism="Hesperia comma" /mol_type="genomic DNA" /db_xref="taxon:291688" WGS CAJQFI010000001-CAJQFI010000195 // LOCUS CAJQFD010000000 10 rc DNA linear INV 14-APR-2021 DEFINITION Hesperia comma, whole genome shotgun sequencing project. ACCESSION CAJQFD000000000 VERSION CAJQFD000000000.1 DBLINK BioProject: PRJEB43996 BioSample: SAMEA7523119 KEYWORDS WGS. SOURCE Hesperia comma (common branded skipper) ORGANISM Hesperia comma Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Hesperioidea; Hesperiidae; Hesperiinae; Hesperiini; Hesperia. REFERENCE 1 (bases 1 to 10) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (29-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Hesperia comma whole genome shotgun (WGS) project has the project accession CAJQFD000000000. This version of the project (01) has the accession number CAJQFD010000000, and consists of sequences CAJQFD010000001-CAJQFD010000010. The assembly ilHesComm1.1 is based on 28x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..10 /organism="Hesperia comma" /mol_type="genomic DNA" /db_xref="taxon:291688" WGS CAJQFD010000001-CAJQFD010000010 // LOCUS CAJQFO010000000 2 rc DNA linear INV 14-APR-2021 DEFINITION Ochlodes sylvanus, whole genome shotgun sequencing project. ACCESSION CAJQFO000000000 VERSION CAJQFO000000000.1 DBLINK BioProject: PRJEB44002 BioSample: SAMEA7523138 KEYWORDS WGS. SOURCE Ochlodes sylvanus ORGANISM Ochlodes sylvanus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Hesperioidea; Hesperiidae; Hesperiinae; Hesperiini; Ochlodes. REFERENCE 1 (bases 1 to 2) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (29-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Ochlodes sylvanus whole genome shotgun (WGS) project has the project accession CAJQFO000000000. This version of the project (01) has the accession number CAJQFO010000000, and consists of sequences CAJQFO010000001-CAJQFO010000002. The assembly ilOchSylv3.1 is based on 23x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..2 /organism="Ochlodes sylvanus" /mol_type="genomic DNA" /db_xref="taxon:876063" WGS CAJQFO010000001-CAJQFO010000002 // LOCUS AZAI02000000 14526 rc DNA linear INV 13-APR-2021 DEFINITION Eurytemora affinis strain Atlantic clade, whole genome shotgun sequencing project. ACCESSION AZAI00000000 VERSION AZAI00000000.2 DBLINK BioProject: PRJNA203087 BioSample: SAMN02302763 KEYWORDS WGS. SOURCE Eurytemora affinis ORGANISM Eurytemora affinis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Hexanauplia; Copepoda; Calanoida; Temoridae; Eurytemora. REFERENCE 1 (bases 1 to 14526) AUTHORS Eyun,S.I., Soh,H.Y., Posavi,M., Munro,J.B., Hughes,D.S.T., Murali,S.C., Qu,J., Dugan,S., Lee,S.L., Chao,H., Dinh,H., Han,Y., Doddapaneni,H., Worley,K.C., Muzny,D.M., Park,E.O., Silva,J.C., Gibbs,R.A., Richards,S. and Lee,C.E. TITLE Evolutionary History of Chemosensory-Related Gene Families across the Arthropoda JOURNAL Mol Biol Evol 34 (8), 1838-1862 (2017) PUBMED 28460028 REFERENCE 2 (bases 1 to 14526) AUTHORS Murali,S.C., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R.D., Hernandez,B., Javaid,M., Jayaseelan,J.C., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Ongeri,F., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Richards,S., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (19-NOV-2013) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA REFERENCE 3 (bases 1 to 14526) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hughes,D., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Osuji,N., Pu,L.-L., Puazo,M., Skinner,E., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (09-OCT-2017) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA COMMENT On Dec 12, 2017 this sequence version replaced AZAI00000000.1. The Eurytemora affinis whole genome shotgun (WGS) project has the project accession AZAI00000000. This version of the project (02) has the accession number AZAI02000000, and consists of sequences AZAI02000001-AZAI02014526. ##Genome-Assembly-Data-START## Assembly Date :: APR-2016 Assembly Method :: AllPaths LG v. 44620; ATLAS-link v. 1.0; ATLAS-gapfill v. 2.2; redundans v. 0.12c Assembly Name :: Eaff_2.0 Expected Final Version :: no Genome Coverage :: 75.0x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..14526 /organism="Eurytemora affinis" /mol_type="genomic DNA" /strain="Atlantic clade" /isolation_source="salt marsh" /db_xref="taxon:88015" /dev_stage="egg" /country="Canada: Baie de L'Isle Verte, St. Lawrence estuary (salt marsh), Quebec" /collection_date="2006/2007" WGS AZAI02000001-AZAI02014526 WGS_SCAFLD KZ484133-KZ486246 // LOCUS JAEANM010000000 297074 rc DNA linear VRT 01-APR-2021 DEFINITION Myanophis thanlyinensis isolate TSch-2020a, whole genome shotgun sequencing project. ACCESSION JAEANM000000000 VERSION JAEANM000000000.1 DBLINK BioProject: PRJNA667001 BioSample: SAMN16348494 KEYWORDS WGS. SOURCE Myanophis thanlyinensis ORGANISM Myanophis thanlyinensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Homalopsidae; Myanophis. REFERENCE 1 (bases 1 to 297074) AUTHORS Kohler,G., Khaing,K.P.P., Than,N.L., Baranski,D., Schell,T., Greve,C., Janke,A. and Pauls,S.U. TITLE A new genus and species of mud snake from Myanmar (Reptilia, Squamata, Homalopsidae) JOURNAL Zootaxa 4915 (3), zootaxa.4915.3.1 (2021) PUBMED 33756559 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 297074) AUTHORS Schell,T. TITLE Direct Submission JOURNAL Submitted (26-NOV-2020) Senckenberg Biodiversity Genome Collection, LOEWE Centre for Translational Biodiversity Genomics (LOEWE-TBG), Georg-Voigt-Str. 14-16, Frankfurt am Main 60325, Germany COMMENT The Myanophis thanlyinensis whole genome shotgun (WGS) project has the project accession JAEANM000000000. This version of the project (01) has the accession number JAEANM010000000, and consists of sequences JAEANM010000001-JAEANM010297074. ##Genome-Assembly-Data-START## Assembly Date :: 03-NOV-2020 Assembly Method :: SPAdes v. 3.14.1 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 81.0x Sequencing Technology :: Illumina NovaSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..297074 /organism="Myanophis thanlyinensis" /mol_type="genomic DNA" /isolate="TSch-2020a" /db_xref="taxon:2777982" /sex="male" /tissue_type="tongue" /dev_stage="adult" /country="Myanmar: Yangon, Thanlyin, near East Yangon University" /lat_lon="16.74255 N 96.28307 E" /collection_date="2019-11-05" /collected_by="Ni Lar Than & Gunther Khler" WGS JAEANM010000001-JAEANM010297074 // LOCUS WNMJ02000000 5626 rc DNA linear VRT 30-MAR-2021 DEFINITION Cygnus olor isolate bCygOlo1, whole genome shotgun sequencing project. ACCESSION WNMJ00000000 VERSION WNMJ00000000.2 DBLINK BioProject: PRJNA561961 BioSample: SAMN12621369 KEYWORDS WGS. SOURCE Cygnus olor (mute swan) ORGANISM Cygnus olor Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Cygnus. REFERENCE 1 (bases 1 to 5626) AUTHORS Kraus,R., Fedrigo,O., Formenti,G., Mountcastle,J., Chow,W., Collins,J., Howe,K., Rhie,A., Karawita,A., Short,K. and Jarvis,E.D. TITLE Cygnus olor (Mute swan) genome, bCygOlo1, alternate haplotype, v2 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5626) AUTHORS Kraus,R., Fedrigo,O., Formenti,G., Mountcastle,J., Chow,W., Collins,J., Howe,K., Rhie,A., Karawita,A., Short,K. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (14-NOV-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA REFERENCE 3 (bases 1 to 5626) AUTHORS Kraus,R., Fedrigo,O., Formenti,G., Mountcastle,J., Chow,W., Collins,J., Howe,K., Rhie,A., Karawita,A., Short,K. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (13-MAR-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT On Mar 30, 2021 this sequence version replaced WNMJ00000000.1. The Cygnus olor whole genome shotgun (WGS) project has the project accession WNMJ00000000. This version of the project (02) has the accession number WNMJ02000000, and consists of sequences WNMJ02000001-WNMJ02005626. ##Genome-Assembly-Data-START## Assembly Date :: 30-NOV-2020 Assembly Method :: FALCON v. 2018.31.08-03.06; FALCON-Unzip v. 6.0.0.47841; purge_haplotigs v. 1.0.3+ 1.Nov.2018; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2020-11-30; VGP assembly pipeline individual v. 1.5 Assembly Name :: bCygOlo1.alt.v2 Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 60.23x Sequencing Technology :: PacBio Sequel; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..5626 /organism="Cygnus olor" /mol_type="genomic DNA" /isolate="bCygOlo1" /db_xref="taxon:8869" /sex="male" /tissue_type="muscle" /dev_stage="adult" /country="Germany: Mainau" /lat_lon="50.149850 N 11.063270 E" /collection_date="2015-07-01" /collected_by="Robert Kraus" WGS WNMJ02000001-WNMJ02005626 // LOCUS WNMI02000000 171 rc DNA linear VRT 31-MAR-2021 DEFINITION Cygnus olor isolate bCygOlo1, whole genome shotgun sequencing project. ACCESSION WNMI00000000 VERSION WNMI00000000.2 DBLINK BioProject: PRJNA561960 BioSample: SAMN12621369 KEYWORDS WGS. SOURCE Cygnus olor (mute swan) ORGANISM Cygnus olor Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Cygnus. REFERENCE 1 (bases 1 to 171) AUTHORS Kraus,R., Fedrigo,O., Formenti,G., Mountcastle,J., Chow,W., Collins,J., Howe,K., Rhie,A., Karawita,A., Short,K. and Jarvis,E.D. TITLE Cygnus olor (Mute swan) genome, bCygOlo1, primary haplotype, v2 JOURNAL Unpublished REFERENCE 2 (bases 1 to 171) AUTHORS Kraus,R., Fedrigo,O., Formenti,G., Mountcastle,J., Chow,W., Collins,J., Howe,K., Rhie,A., Karawita,A., Short,K. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (14-NOV-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA REFERENCE 3 (bases 1 to 171) AUTHORS Kraus,R., Fedrigo,O., Formenti,G., Mountcastle,J., Chow,W., Collins,J., Howe,K., Rhie,A., Karawita,A., Short,K. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (13-MAR-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT On Mar 30, 2021 this sequence version replaced WNMI00000000.1. The Cygnus olor whole genome shotgun (WGS) project has the project accession WNMI00000000. This version of the project (02) has the accession number WNMI02000000, and consists of sequences WNMI02000001-WNMI02000171. ##Genome-Assembly-Data-START## Assembly Date :: 30-NOV-2020 Assembly Method :: FALCON v. 2018.31.08-03.06; FALCON-Unzip v. 6.0.0.47841; purge_haplotigs v. 1.0.3+ 1.Nov.2018; scaff10x v. 4.1.0; Bionano solve v. 3.2.1_04122018; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2020-11-30; VGP assembly pipeline individual v. 1.5 Assembly Name :: bCygOlo1.pri.v2 Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 60.23x Sequencing Technology :: PacBio Sequel 1 CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..171 /organism="Cygnus olor" /mol_type="genomic DNA" /isolate="bCygOlo1" /db_xref="taxon:8869" /sex="male" /tissue_type="muscle" /dev_stage="adult" /country="Germany: Mainau" /lat_lon="50.149850 N 11.063270 E" /collection_date="2015-07-01" /collected_by="Robert Kraus" WGS WNMI02000001-WNMI02000171 WGS_SCAFLD CM020065-CM020095 WGS_SCAFLD CM020139 WGS_SCAFLD CM030310-CM030314 // LOCUS JAGFOW010000000 5690 rc DNA linear VRT 30-MAR-2021 DEFINITION Aplochiton taeniatus isolate fAplTae1, whole genome shotgun sequencing project. ACCESSION JAGFOW000000000 VERSION JAGFOW000000000.1 DBLINK BioProject: PRJNA561972 BioSample: SAMN12623621 KEYWORDS WGS. SOURCE Aplochiton taeniatus ORGANISM Aplochiton taeniatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Galaxiidae; Aplochiton. REFERENCE 1 (bases 1 to 5690) AUTHORS Myers,G., Pippel,M., Formenti,G., Montero,M., Winkler,S., Tracey,A., Pointon,D.-L., Howe,K., Guzman,C.C., Meyer,A., Durbin,R., Venkatesh,B. and Jarvis,E.D. TITLE Aplochiton taeniatus (Peladilla) genome, fAplTae1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 5690) AUTHORS Myers,G., Pippel,M., Formenti,G., Montero,M., Winkler,S., Tracey,A., Pointon,D.-L., Howe,K., Guzman,C.C., Meyer,A., Durbin,R., Venkatesh,B. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (19-MAR-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Aplochiton taeniatus whole genome shotgun (WGS) project has the project accession JAGFOW000000000. This version of the project (01) has the accession number JAGFOW010000000, and consists of sequences JAGFOW010000001-JAGFOW010005690. ##Genome-Assembly-Data-START## Assembly Date :: 04-MAR-2021 Assembly Method :: FALCON v. DX 2.0.2; FALCON-Unzip v. DX 8.0.1; purge_dups v. DX 19-08-10; scaff10X v. DX 2.0.3; bionano Solve v. DX 3.4.0; Salsa2 HiC v. DX 2.2.0; Assembly Polish v. SMRTLink7.0.1; Longranger Align v. DX 2.2.2.1; freebayes v. DX 19-07-11; gEVAL manual curation v. 2021-03-04; VGP assembly pipeline v. 1.6 Assembly Name :: fAplTae1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 60.0x Sequencing Technology :: PacBio Sequel CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..5690 /organism="Aplochiton taeniatus" /mol_type="genomic DNA" /isolate="fAplTae1" /specimen_voucher="6995" /db_xref="taxon:946358" /tissue_type="liver" /dev_stage="subadult" /country="Chile: Santo Domingo River, Valdivia, Los Rios district" /lat_lon="39.917592 S 73.107197 W" /collection_date="2018-09-11" /collected_by="Cristian Correa Guzman" WGS JAGFOW010000001-JAGFOW010005690 // LOCUS JAGFVO010000000 4278 rc DNA linear VRT 30-MAR-2021 DEFINITION Ciconia maguari isolate bCicMag1, whole genome shotgun sequencing project. ACCESSION JAGFVO000000000 VERSION JAGFVO000000000.1 DBLINK BioProject: PRJNA715732 BioSample: SAMN18353822 KEYWORDS WGS. SOURCE Ciconia maguari ORGANISM Ciconia maguari Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Ciconiiformes; Ciconiidae; Ciconia. REFERENCE 1 (bases 1 to 4278) AUTHORS Gilbert,M.T.P., De Panis,D., Formenti,G., Pelan,S., Sims,Y., Angie,J., Chiappe,L., Olson,S., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Ciconia maguari (Maguari stork) genome, bCicMag1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 4278) AUTHORS Gilbert,M.T.P., De Panis,D., Formenti,G., Pelan,S., Sims,Y., Angie,J., Chiappe,L., Olson,S., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (19-MAR-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Ciconia maguari whole genome shotgun (WGS) project has the project accession JAGFVO000000000. This version of the project (01) has the accession number JAGFVO010000000, and consists of sequences JAGFVO010000001-JAGFVO010004278. ##Genome-Assembly-Data-START## Assembly Date :: 15-JUL-2020 Assembly Method :: FALCON v. DX 2.0.2; FALCON-Unzip v. DX 8.0.1; purge_dups v. DX 19-08-10; scaff10X v. DX 2.0.3; bionano Solve v. DX 3.4.0; Salsa2 HiC v. DX 2.2.0; pbalign v. 0.3.2; pbgcpp v. 1.9.0; Longranger Align v. DX 2.2.2.1; freebayes v. DX 19-07-11; gEVAL manual curation v. 2020-07-15; VGP assembly pipeline v. 1.6 Assembly Name :: bCicMag1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 88.32x Sequencing Technology :: PacBio Sequel II CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..4278 /organism="Ciconia maguari" /mol_type="genomic DNA" /isolate="bCicMag1" /specimen_voucher="USNM:614528" /db_xref="taxon:52777" /sex="female" /dev_stage="adult" /country="Argentina: Estancia El Tala, near Puerto Constanza" /lat_lon="33.2599 S 64.8519 W" /collection_date="1992-02-18" /collected_by="J.P. Angie, Luis Chiappe, Storrs L. Olsonn" WGS JAGFVO010000001-JAGFVO010004278 // LOCUS JAGFVJ010000000 3194 rc DNA linear VRT 30-MAR-2021 DEFINITION Melanotaenia boesemani isolate fMelBoe1, whole genome shotgun sequencing project. ACCESSION JAGFVJ000000000 VERSION JAGFVJ000000000.1 DBLINK BioProject: PRJNA561966 BioSample: SAMN12623618 KEYWORDS WGS. SOURCE Melanotaenia boesemani (Boeseman's rainbowfish) ORGANISM Melanotaenia boesemani Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Atheriniformes; Melanotaeniidae; Melanotaenia. REFERENCE 1 (bases 1 to 3194) AUTHORS Myers,G., Brown,T., Pippel,M., Winkler,S., Tracey,A., Pointon,D.-L., Howe,K., Venkatesh,B., Durbin,R. and Jarvis,E.D. TITLE Melanotaenia boesemani (Boeseman's rainbowfish) genome, fMelBoe1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 3194) AUTHORS Myers,G., Brown,T., Pippel,M., Winkler,S., Tracey,A., Pointon,D.-L., Howe,K., Venkatesh,B., Durbin,R. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (20-MAR-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Melanotaenia boesemani whole genome shotgun (WGS) project has the project accession JAGFVJ000000000. This version of the project (01) has the accession number JAGFVJ010000000, and consists of sequences JAGFVJ010000001-JAGFVJ010003194. ##Genome-Assembly-Data-START## Assembly Date :: 12-MAR-2021 Assembly Method :: FALCON v. DX 2.0.2; FALCON-Unzip v. DX 8.0.1; purge_dups v. DX 19-08-10; scaff10X v. DX 2.0.3; bionano Solve v. DX 3.4.0; Salsa2 HiC v. DX 2.2.0; pbalign v. 0.3.2; pbgcpp v. 1.9.0; Longranger Align v. DX 2.2.2.1; freebayes v. DX 19-07-11; gEVAL manual curation v. 2021-03-12; VGP assembly pipeline v. 1.6 Assembly Name :: fMelBoe1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 60.0x Sequencing Technology :: PacBio Sequel CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..3194 /organism="Melanotaenia boesemani" /mol_type="genomic DNA" /isolate="fMelBoe1" /db_xref="taxon:1250792" /tissue_type="muscle" /country="Singapore" /lat_lon="1.3521 N 103.8198 E" /collection_date="2018-08-08" /collected_by="Byrappa Venkatesh" WGS JAGFVJ010000001-JAGFVJ010003194 // LOCUS JAGFVI010000000 93 rc DNA linear VRT 30-MAR-2021 DEFINITION Melanotaenia boesemani isolate fMelBoe1, whole genome shotgun sequencing project. ACCESSION JAGFVI000000000 VERSION JAGFVI000000000.1 DBLINK BioProject: PRJNA561965 BioSample: SAMN12623618 KEYWORDS WGS. SOURCE Melanotaenia boesemani (Boeseman's rainbowfish) ORGANISM Melanotaenia boesemani Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Atheriniformes; Melanotaeniidae; Melanotaenia. REFERENCE 1 (bases 1 to 93) AUTHORS Myers,G., Brown,T., Pippel,M., Winkler,S., Tracey,A., Pointon,D.-L., Howe,K., Venkatesh,B., Durbin,R. and Jarvis,E.D. TITLE Melanotaenia boesemani (Boeseman's rainbowfish) genome, fMelBoe1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 93) AUTHORS Myers,G., Brown,T., Pippel,M., Winkler,S., Tracey,A., Pointon,D.-L., Howe,K., Venkatesh,B., Durbin,R. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (20-MAR-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Melanotaenia boesemani whole genome shotgun (WGS) project has the project accession JAGFVI000000000. This version of the project (01) has the accession number JAGFVI010000000, and consists of sequences JAGFVI010000001-JAGFVI010000093. ##Genome-Assembly-Data-START## Assembly Date :: 12-MAR-2021 Assembly Method :: FALCON v. DX 2.0.2; FALCON-Unzip v. DX 8.0.1; purge_dups v. DX 19-08-10; scaff10X v. DX 2.0.3; bionano Solve v. DX 3.4.0; Salsa2 HiC v. DX 2.2.0; pbalign v. 0.3.2; pbgcpp v. 1.9.0; Longranger Align v. DX 2.2.2.1; freebayes v. DX 19-07-11; gEVAL manual curation v. 2021-03-12; VGP assembly pipeline v. 1.6 Assembly Name :: fMelBoe1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 60.0x Sequencing Technology :: PacBio Sequel CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..93 /organism="Melanotaenia boesemani" /mol_type="genomic DNA" /isolate="fMelBoe1" /db_xref="taxon:1250792" /tissue_type="muscle" /country="Singapore" /lat_lon="1.3521 N 103.8198 E" /collection_date="2018-08-08" /collected_by="Byrappa Venkatesh" WGS JAGFVI010000001-JAGFVI010000093 WGS_SCAFLD CM030225-CM030249 // LOCUS JAGFOV010000000 41 rc DNA linear VRT 30-MAR-2021 DEFINITION Aplochiton taeniatus isolate fAplTae1, whole genome shotgun sequencing project. ACCESSION JAGFOV000000000 VERSION JAGFOV000000000.1 DBLINK BioProject: PRJNA561971 BioSample: SAMN12623621 KEYWORDS WGS. SOURCE Aplochiton taeniatus ORGANISM Aplochiton taeniatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Galaxiidae; Aplochiton. REFERENCE 1 (bases 1 to 41) AUTHORS Myers,G., Pippel,M., Formenti,G., Montero,M., Winkler,S., Tracey,A., Pointon,D.-L., Howe,K., Guzman,C.C., Meyer,A., Durbin,R., Venkatesh,B. and Jarvis,E.D. TITLE Aplochiton taeniatus (Peladilla) genome, fAplTae1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 41) AUTHORS Myers,G., Pippel,M., Formenti,G., Montero,M., Winkler,S., Tracey,A., Pointon,D.-L., Howe,K., Guzman,C.C., Meyer,A., Durbin,R., Venkatesh,B. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (19-MAR-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Aplochiton taeniatus whole genome shotgun (WGS) project has the project accession JAGFOV000000000. This version of the project (01) has the accession number JAGFOV010000000, and consists of sequences JAGFOV010000001-JAGFOV010000041. ##Genome-Assembly-Data-START## Assembly Date :: 04-MAR-2021 Assembly Method :: FALCON v. DX 2.0.2; FALCON-Unzip v. DX 8.0.1; purge_dups v. DX 19-08-10; scaff10X v. DX 2.0.3; bionano Solve v. DX 3.4.0; Salsa2 HiC v. DX 2.2.0; Assembly Polish v. SMRTLink7.0.1; Longranger Align v. DX 2.2.2.1; freebayes v. DX 19-07-11; gEVAL manual curation v. 2021-03-04; VGP assembly pipeline v. 1.6 Assembly Name :: fAplTae1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 60.0x Sequencing Technology :: PacBio Sequel CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..41 /organism="Aplochiton taeniatus" /mol_type="genomic DNA" /isolate="fAplTae1" /specimen_voucher="6995" /db_xref="taxon:946358" /tissue_type="liver" /dev_stage="subadult" /country="Chile: Santo Domingo River, Valdivia, Los Rios district" /lat_lon="39.917592 S 73.107197 W" /collection_date="2018-09-11" /collected_by="Cristian Correa Guzman" WGS JAGFOV010000001-JAGFOV010000041 WGS_SCAFLD CM030172-CM030191 // LOCUS JAGFVT010000000 551 rc DNA linear VRT 30-MAR-2021 DEFINITION Falco naumanni isolate bFalNau1, whole genome shotgun sequencing project. ACCESSION JAGFVT000000000 VERSION JAGFVT000000000.1 DBLINK BioProject: PRJNA702665 BioSample: SAMN16870685 KEYWORDS WGS. SOURCE Falco naumanni (lesser kestrel) ORGANISM Falco naumanni Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Falconiformes; Falconidae; Falco. REFERENCE 1 (bases 1 to 551) AUTHORS Rubolini,D., Formenti,G., Secomandi,S., Maloney,B., Bounas,T., Mountcastle,J., Haase,B., Bonisoli-Alquati,A., Galimberti,A., Ficetola,G.F., Tracey,A., Sims,Y., Howe,K., Rhie,A., Fedrigo,O. and Jarvis,E.D. TITLE Falco naumanni (Lesser kestrel) genome, bFalNau1, maternal haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 551) AUTHORS Rubolini,D., Formenti,G., Secomandi,S., Maloney,B., Bounas,T., Mountcastle,J., Haase,B., Bonisoli-Alquati,A., Galimberti,A., Ficetola,G.F., Tracey,A., Sims,Y., Howe,K., Rhie,A., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (18-MAR-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Falco naumanni whole genome shotgun (WGS) project has the project accession JAGFVT000000000. This version of the project (01) has the accession number JAGFVT010000000, and consists of sequences JAGFVT010000001-JAGFVT010000551. ##Genome-Assembly-Data-START## Assembly Date :: 14-JUL-2020 Assembly Method :: TrioCanu v. 1.8; purge_dups v. 1.0.0; Scaff 10x v. 4.1.0; Bionano solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; pbgcpp v. 1.9.0; Freebayes v. 1.3.1; gEVAL manual curation v. 2020-07-14; VGP trio assembly pipeline v. 1.6 Assembly Name :: bFalNau1.mat Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 104.34x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..551 /organism="Falco naumanni" /mol_type="genomic DNA" /isolate="bFalNau1" /specimen_voucher="P51P2 - H187058 (nest 2016-P51)" /db_xref="taxon:148594" /sex="female" /tissue_type="blood" /dev_stage="juvenile" /country="Italy: Matera" /lat_lon="40.67 N 16.60 E" /collection_date="2016-06-25" /collected_by="Diego Rubolini" WGS JAGFVT010000001-JAGFVT010000551 // LOCUS JAGFVN010000000 153 rc DNA linear VRT 30-MAR-2021 DEFINITION Ciconia maguari isolate bCicMag1, whole genome shotgun sequencing project. ACCESSION JAGFVN000000000 VERSION JAGFVN000000000.1 DBLINK BioProject: PRJNA715733 BioSample: SAMN18353822 KEYWORDS WGS. SOURCE Ciconia maguari ORGANISM Ciconia maguari Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Ciconiiformes; Ciconiidae; Ciconia. REFERENCE 1 (bases 1 to 153) AUTHORS Gilbert,M.T.P., De Panis,D., Formenti,G., Pelan,S., Sims,Y., Angie,J., Chiappe,L., Olson,S., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Ciconia maguari (Maguari stork) genome, bCicMag1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 153) AUTHORS Gilbert,M.T.P., De Panis,D., Formenti,G., Pelan,S., Sims,Y., Angie,J., Chiappe,L., Olson,S., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (23-MAR-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Ciconia maguari whole genome shotgun (WGS) project has the project accession JAGFVN000000000. This version of the project (01) has the accession number JAGFVN010000000, and consists of sequences JAGFVN010000001-JAGFVN010000153. ##Genome-Assembly-Data-START## Assembly Date :: 15-JUL-2020 Assembly Method :: FALCON v. DX 2.0.2; FALCON-Unzip v. DX 8.0.1; purge_dups v. DX 19-08-10; scaff10X v. DX 2.0.3; bionano Solve v. DX 3.4.0; Salsa2 HiC v. DX 2.2.0; pbalign v. 0.3.2; pbgcpp v. 1.9.0; Longranger Align v. DX 2.2.2.1; freebayes v. DX 19-07-11; gEVAL manual curation v. 2020-07-15; VGP assembly pipeline v. 1.6 Assembly Name :: bCicMag1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 88.32x Sequencing Technology :: PacBio Sequel II CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..153 /organism="Ciconia maguari" /mol_type="genomic DNA" /isolate="bCicMag1" /specimen_voucher="USNM:614528" /db_xref="taxon:52777" /sex="female" /dev_stage="adult" /country="Argentina: Estancia El Tala, near Puerto Constanza" /lat_lon="33.2599 S 64.8519 W" /collection_date="1992-02-18" /collected_by="J.P. Angie, Luis Chiappe, Storrs L. Olsonn" WGS JAGFVN010000001-JAGFVN010000153 WGS_SCAFLD CM030193-CM030224 // LOCUS JAGFVS010000000 291 rc DNA linear VRT 30-MAR-2021 DEFINITION Falco naumanni isolate bFalNau1, whole genome shotgun sequencing project. ACCESSION JAGFVS000000000 VERSION JAGFVS000000000.1 DBLINK BioProject: PRJNA702666 BioSample: SAMN16870685 KEYWORDS WGS. SOURCE Falco naumanni (lesser kestrel) ORGANISM Falco naumanni Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Falconiformes; Falconidae; Falco. REFERENCE 1 (bases 1 to 291) AUTHORS Rubolini,D., Formenti,G., Secomandi,S., Maloney,B., Bounas,T., Mountcastle,J., Haase,B., Bonisoli-Alquati,A., Galimberti,A., Ficetola,G.F., Tracey,A., Sims,Y., Howe,K., Rhie,A., Fedrigo,O. and Jarvis,E.D. TITLE Falco naumanni (Lesser kestrel) genome, bFalNau1, paternal haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 291) AUTHORS Rubolini,D., Formenti,G., Secomandi,S., Maloney,B., Bounas,T., Mountcastle,J., Haase,B., Bonisoli-Alquati,A., Galimberti,A., Ficetola,G.F., Tracey,A., Sims,Y., Howe,K., Rhie,A., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (18-MAR-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Falco naumanni whole genome shotgun (WGS) project has the project accession JAGFVS000000000. This version of the project (01) has the accession number JAGFVS010000000, and consists of sequences JAGFVS010000001-JAGFVS010000291. ##Genome-Assembly-Data-START## Assembly Date :: 14-JUL-2020 Assembly Method :: TrioCanu v. 1.8; purge_dups v. 1.0.0; Scaff 10x v. 4.1.0; Bionano solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; pbgcpp v. 1.9.0; Freebayes v. 1.3.1; gEVAL manual curation v. 2020-07-14; VGP trio assembly pipeline v. 1.6 Assembly Name :: bFalNau1.pat Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 104.34x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..291 /organism="Falco naumanni" /mol_type="genomic DNA" /isolate="bFalNau1" /specimen_voucher="P51P2 - H187058 (nest 2016-P51)" /db_xref="taxon:148594" /sex="female" /tissue_type="blood" /dev_stage="juvenile" /country="Italy: Matera" /lat_lon="40.67 N 16.60 E" /collection_date="2016-06-25" /collected_by="Diego Rubolini" WGS JAGFVS010000001-JAGFVS010000291 WGS_SCAFLD CM030145-CM030171 WGS_SCAFLD CM030192 // LOCUS JAGDEE010000000 719 rc DNA linear VRT 30-MAR-2021 DEFINITION Carcharodon carcharias isolate sCarCar2, whole genome shotgun sequencing project. ACCESSION JAGDEE000000000 VERSION JAGDEE000000000.1 DBLINK BioProject: PRJNA562007 BioSample: SAMN12629504 KEYWORDS WGS. SOURCE Carcharodon carcharias (great white shark) ORGANISM Carcharodon carcharias Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Lamniformes; Alopiidae; Carcharodon. REFERENCE 1 (bases 1 to 719) AUTHORS Naylor,G., Fedrigo,O., Lowe,C., Lyons,K., Formenti,G., Tracey,A., Pointon,D.-L., Howe,K. and Jarvis,E.D. TITLE Carcharodon carcharias (Great white shark) genome, sCarCar2, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 719) AUTHORS Naylor,G., Fedrigo,O., Lowe,C., Lyons,K., Formenti,G., Tracey,A., Pointon,D.-L., Howe,K. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (10-MAR-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Carcharodon carcharias whole genome shotgun (WGS) project has the project accession JAGDEE000000000. This version of the project (01) has the accession number JAGDEE010000000, and consists of sequences JAGDEE010000001-JAGDEE010000719. ##Genome-Assembly-Data-START## Assembly Date :: 05-FEB-2021 Assembly Method :: FALCON v. DX 2.0.1; FALCON-Unzip v. DX 1.2.1; purge_dups v. DX 19-08-10; scaff10X v. DX 2.0.3; bionano Solve v. DX 3.4.0; Salsa2 HiC v. DX 2.2.0; Arrow polishing and gap filling v. DX 7.0.1.1; Longranger Align DX v. 2.2.2.1; freebayes DX v. 19-07-11; gEVAL manual curation v. 2021-02-05; VGP assembly pipeline v. 1.6 Assembly Name :: sCarCar2.pri Diploid :: Principal Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 66.84x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..719 /organism="Carcharodon carcharias" /mol_type="genomic DNA" /isolate="sCarCar2" /db_xref="taxon:13397" /sex="male" /tissue_type="blood" /dev_stage="juvenile" /country="USA" /lat_lon="33.782158 N 118.12249 W" /collection_date="2019-01-30" /collected_by="Chris Lowe, Kady Lyons" WGS JAGDEE010000001-JAGDEE010000719 WGS_SCAFLD CM029965-CM030006 WGS_SCAFLD CM030070 // LOCUS JAGGDW010000000 1147 rc DNA linear VRT 30-MAR-2021 DEFINITION Pluvialis apricaria isolate bPluApr1, whole genome shotgun sequencing project. ACCESSION JAGGDW000000000 VERSION JAGGDW000000000.1 DBLINK BioProject: PRJNA715923 BioSample: SAMN18353970 KEYWORDS WGS. SOURCE Pluvialis apricaria ORGANISM Pluvialis apricaria Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Charadriidae; Pluvialis. REFERENCE 1 (bases 1 to 1147) AUTHORS Gilbert,M.T.P., Fungtammasan,A., Secomandi,S., Formenti,G., Collins,J., Wood,J., Dove,C.J., Graves,G., Durbin,R., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Pluvialis apricaria (European golden plover) genome, bPluApr1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 1147) AUTHORS Gilbert,M.T.P., Fungtammasan,A., Secomandi,S., Formenti,G., Collins,J., Wood,J., Dove,C.J., Graves,G., Durbin,R., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (23-MAR-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Pluvialis apricaria whole genome shotgun (WGS) project has the project accession JAGGDW000000000. This version of the project (01) has the accession number JAGGDW010000000, and consists of sequences JAGGDW010000001-JAGGDW010001147. ##Genome-Assembly-Data-START## Assembly Date :: 28-JUL-2020 Assembly Method :: FALCON v. DX 2.0.2; FALCON-Unzip v. DX 8.0.1; purge_dups v. DX 19-08-10; scaff10X v. DX 2.0.3; bionano Solve v. DX 3.4.0; Salsa2 HiC v. DX 2.2.0; pbalign v. 0.3.2; pbgcpp v. 1.9.0; Longranger Align v. DX 2.2.2.1; freebayes v. DX 19-07-11; gEVAL manual curation v. 2020-07-28; VGP assembly pipeline v. 1.6 Assembly Name :: bPluApr1.alt Diploid :: Alternate Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 60.0x Sequencing Technology :: PacBio Sequel II CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1147 /organism="Pluvialis apricaria" /mol_type="genomic DNA" /isolate="bPluApr1" /specimen_voucher="USNM:614528" /db_xref="taxon:670352" /sex="female" /dev_stage="adult" /country="Iceland: Keflavik Naval Air Station" /lat_lon="63.971667 N 22.601111 W" /collection_date="2001-08-07" /collected_by="Carla J. Dove" WGS JAGGDW010000001-JAGGDW010001147 // LOCUS JAGGDV010000000 107 rc DNA linear VRT 30-MAR-2021 DEFINITION Pluvialis apricaria isolate bPluApr1, whole genome shotgun sequencing project. ACCESSION JAGGDV000000000 VERSION JAGGDV000000000.1 DBLINK BioProject: PRJNA715924 BioSample: SAMN18353970 KEYWORDS WGS. SOURCE Pluvialis apricaria ORGANISM Pluvialis apricaria Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Charadriidae; Pluvialis. REFERENCE 1 (bases 1 to 107) AUTHORS Gilbert,M.T.P., Fungtammasan,A., Secomandi,S., Formenti,G., Collins,J., Wood,J., Dove,C.J., Graves,G., Durbin,R., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Pluvialis apricaria (European golden plover) genome, bPluApr1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 107) AUTHORS Gilbert,M.T.P., Fungtammasan,A., Secomandi,S., Formenti,G., Collins,J., Wood,J., Dove,C.J., Graves,G., Durbin,R., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (23-MAR-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Pluvialis apricaria whole genome shotgun (WGS) project has the project accession JAGGDV000000000. This version of the project (01) has the accession number JAGGDV010000000, and consists of sequences JAGGDV010000001-JAGGDV010000107. ##Genome-Assembly-Data-START## Assembly Date :: 28-JUL-2020 Assembly Method :: FALCON v. DX 2.0.2; FALCON-Unzip v. DX 8.0.1; purge_dups v. DX 19-08-10; scaff10X v. DX 2.0.3; bionano Solve v. DX 3.4.0; Salsa2 HiC v. DX 2.2.0; pbalign v. 0.3.2; pbgcpp v. 1.9.0; Longranger Align v. DX 2.2.2.1; freebayes v. DX 19-07-11; gEVAL manual curation v. 2020-07-15; VGP assembly pipeline v. 1.6 Assembly Name :: bPluApr1.pri Diploid :: Principal Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 60.0x Sequencing Technology :: PacBio Sequel II CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..107 /organism="Pluvialis apricaria" /mol_type="genomic DNA" /isolate="bPluApr1" /specimen_voucher="USNM:614528" /db_xref="taxon:670352" /sex="female" /dev_stage="adult" /country="Iceland: Keflavik Naval Air Station" /lat_lon="63.971667 N 22.601111 W" /collection_date="2001-08-07" /collected_by="Carla J. Dove" WGS JAGGDV010000001-JAGGDV010000107 WGS_SCAFLD CM030007-CM030045 // LOCUS JAGDEF010000000 39 rc DNA linear VRT 30-MAR-2021 DEFINITION Carcharodon carcharias isolate sCarCar2, whole genome shotgun sequencing project. ACCESSION JAGDEF000000000 VERSION JAGDEF000000000.1 DBLINK BioProject: PRJNA562008 BioSample: SAMN12629504 KEYWORDS WGS. SOURCE Carcharodon carcharias (great white shark) ORGANISM Carcharodon carcharias Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Lamniformes; Alopiidae; Carcharodon. REFERENCE 1 (bases 1 to 39) AUTHORS Naylor,G., Fedrigo,O., Lowe,C., Lyons,K., Formenti,G., Tracey,A., Pointon,D.-L., Howe,K. and Jarvis,E.D. TITLE Carcharodon carcharias (Great white shark) genome, sCarCar2, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 39) AUTHORS Naylor,G., Fedrigo,O., Lowe,C., Lyons,K., Formenti,G., Tracey,A., Pointon,D.-L., Howe,K. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (10-MAR-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Carcharodon carcharias whole genome shotgun (WGS) project has the project accession JAGDEF000000000. This version of the project (01) has the accession number JAGDEF010000000, and consists of sequences JAGDEF010000001-JAGDEF010000039. ##Genome-Assembly-Data-START## Assembly Date :: 05-FEB-2021 Assembly Method :: FALCON v. DX 2.0.1; FALCON-Unzip v. DX 1.2.1; purge_dups v. DX 19-08-10; scaff10X v. DX 2.0.3; bionano Solve v. DX 3.4.0; Salsa2 HiC v. DX 2.2.0; Arrow polishing and gap filling v. DX 7.0.1.1; Longranger Align v. DX 2.2.2.1; freebayes v. DX 19-07-11; gEVAL manual curation v. 2021-02-05; VGP assembly pipeline v. 1.6 Assembly Name :: sCarCar2.alt Diploid :: Alternate Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 66.84x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..39 /organism="Carcharodon carcharias" /mol_type="genomic DNA" /isolate="sCarCar2" /db_xref="taxon:13397" /sex="male" /tissue_type="blood" /dev_stage="juvenile" /country="USA" /lat_lon="33.782158 N 118.12249 W" /collection_date="2019-01-30" /collected_by="Chris Lowe, Kady Lyons" WGS JAGDEF010000001-JAGDEF010000039 // LOCUS JABVXQ010000000 42 rc DNA linear MAM 31-MAR-2021 DEFINITION Phyllostomus discolor isolate Bat1K_MPI-CBG_1, whole genome shotgun sequencing project. ACCESSION JABVXQ000000000 VERSION JABVXQ000000000.1 DBLINK BioProject: PRJNA628578 BioSample: SAMN14734468 KEYWORDS WGS. SOURCE Phyllostomus discolor (pale spear-nosed bat) ORGANISM Phyllostomus discolor Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Phyllostomidae; Phyllostominae; Phyllostomus. REFERENCE 1 (bases 1 to 42) AUTHORS Jebb,D., Huang,Z., Pippel,M., Hughes,G.M., Lavrichenko,K., Devanna,P., Winkler,S., Jermiin,L.S., Skirmuntt,E.C., Katzourakis,A., Burkitt-Gray,L., Ray,D.A., Sullivan,K.A.M., Roscito,J.G., Kirilenko,B.M., Davalos,L.M., Corthals,A.P., Power,M.L., Jones,G., Ransome,R.D., Dechmann,D.K.N., Locatelli,A.G., Puechmaille,S.J., Fedrigo,O., Jarvis,E.D., Hiller,M., Vernes,S.C., Myers,E.W. and Teeling,E.C. TITLE Six reference-quality genomes reveal evolution of bat adaptations JOURNAL Nature 583 (7817), 578-584 (2020) PUBMED 32699395 REFERENCE 2 (bases 1 to 42) AUTHORS Pippel,M., Jebb,D., Huang,Z., Huges,G., Lavrichenko,K., Devanna,P., Winkler,S., Ray,D., Davalos,L., Hiller,M., Vernes,S., Myers,E., Teeling,E., Jarvis,E. and Fedrigo,O. TITLE Direct Submission JOURNAL Submitted (03-JUN-2020) Center for Systems Biology, Bat1K, Pfotenhauerstrasse 108, Dresden 01307, Germany COMMENT The Phyllostomus discolor whole genome shotgun (WGS) project has the project accession JABVXQ000000000. This version of the project (01) has the accession number JABVXQ010000000, and consists of sequences JABVXQ010000001-JABVXQ010000042. ##Genome-Assembly-Data-START## Assembly Date :: 27-APR-2019 Assembly Method :: DAmar v. APRIL-2019; Bionano Solve BSPQI + BSSSI v. 3.3; Salsa2 HiC v. git commit: e3ae7d8; GenomicConsensus v. git commit: 038de5c; longranger align v. 2.2.0; Freebayes v. 1.2.0; HiGlass manual curation v. 1.5 Assembly Name :: MPI-CBG_DAmar_mPhyDis1.p_v1.0 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 78.0x Sequencing Technology :: PacBio Sequel CLR; 10X Genomics chromium linked reads; Bionano Genomics; Arima Genomics HiC; PacBio Sequel IsoSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..42 /organism="Phyllostomus discolor" /mol_type="genomic DNA" /isolate="Bat1K_MPI-CBG_1" /db_xref="taxon:89673" /sex="male" /tissue_type="muscle" /dev_stage="adult" /country="Germany: Munich (LMU captive colony)" /collection_date="2016" /collected_by="Sonja Vernes" WGS JABVXQ010000001-JABVXQ010000042 WGS_SCAFLD CM030315 // LOCUS JAAGWR010000000 958 rc DNA linear VRT 30-MAR-2021 DEFINITION Amblyraja radiata isolate CabotCenter1, whole genome shotgun sequencing project. ACCESSION JAAGWR000000000 VERSION JAAGWR000000000.1 DBLINK BioProject: PRJNA591369 BioSample: SAMN09948523 KEYWORDS WGS. SOURCE Amblyraja radiata (thorny skate) ORGANISM Amblyraja radiata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Batoidea; Rajiformes; Rajidae; Amblyraja. REFERENCE 1 (bases 1 to 958) AUTHORS Naylor,G., Rhie,A., Kneebone,J., Denton,J., Corrigan,S., Johnston,S., Mountcastle,J., Haase,B., Formenti,G., Tracey,A., Sims,Y., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Amblyraja radiata (thorny skate) genome, sAmbRad1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 958) AUTHORS Naylor,G., Rhie,A., Kneebone,J., Denton,J., Corrigan,S., Johnston,S., Mountcastle,J., Haase,B., Formenti,G., Tracey,A., Sims,Y., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (07-FEB-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Amblyraja radiata whole genome shotgun (WGS) project has the project accession JAAGWR000000000. This version of the project (01) has the accession number JAAGWR010000000, and consists of sequences JAAGWR010000001-JAAGWR010000958. This assembly represents the principal haplotype of the diploid genome Amblyraja radiata and includes the chromosomes. The alternate haplotype sequences are in WGS project JAAGWS000000000 Chromosome 44 in assembly sAmbRad1.pri was reidentified as chromosome X in assembly sAmbRad1.1.pri in March 2021. ##Genome-Assembly-Data-START## Assembly Date :: 13-JAN-2020 Assembly Method :: Canu v. 1.7; purge_haplotigs v. bitbucket 7.10.2018; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.3; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 5.1.0.26412; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; purge_dups v. ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b; gEVAL manual curation v. 2020-01-13; VGP assembly pipeline v. 1.5 Assembly Name :: sAmbRad1.1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 128.24x Sequencing Technology :: PacBio Sequel; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..958 /organism="Amblyraja radiata" /mol_type="genomic DNA" /isolate="CabotCenter1" /db_xref="taxon:386614" /sex="male" /tissue_type="testis, liver" /country="USA: Gulf of Main" /lat_lon="43.1336 N 68.3266 W" /collection_date="2017-09-18" /collected_by="Jeff Kneebone" WGS JAAGWR010000001-JAAGWR010000958 WGS_SCAFLD CM021366-CM021414 WGS_SCAFLD CM021416 // LOCUS WOXU01000000 173 rc DNA linear VRT 30-MAR-2021 DEFINITION Pristis pectinata isolate sPriPec2, whole genome shotgun sequencing project. ACCESSION WOXU00000000 VERSION WOXU00000000.1 DBLINK BioProject: PRJNA562009 BioSample: SAMN12629505 KEYWORDS WGS. SOURCE Pristis pectinata (smalltooth sawfish) ORGANISM Pristis pectinata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Batoidea; Rhinopristiformes; Pristidae; Pristis. REFERENCE 1 (bases 1 to 173) AUTHORS Naylor,G., Rhie,A., Mountcastle,J., Haase,B., Formenti,G., Prohaska,B., Byrappa,V., White,S., Wood,J., Chow,W., Howe,K., Jarvis,E.D. and Fedrigo,O. TITLE Pristis pectinata (smalltooth sawfish) genome, sPriPec2, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 173) AUTHORS Naylor,G., Rhie,A., Mountcastle,J., Haase,B., Formenti,G., Prohaska,B., Byrappa,V., White,S., Wood,J., Chow,W., Howe,K., Jarvis,E.D. and Fedrigo,O. TITLE Direct Submission JOURNAL Submitted (25-NOV-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Pristis pectinata whole genome shotgun (WGS) project has the project accession WOXU00000000. This version of the project (01) has the accession number WOXU01000000, and consists of sequences WOXU01000001-WOXU01000173. This assembly represents the principal haplotype of the diploid genome Pristis pectinata and includes the chromosomes. The alternate haplotype sequences are in WGS project WOXV00000000. Chromosome 36 in assembly sPriPec2.pri was reidentified as chromosome X in assembly sPriPec2.1.pri in March 2021. ##Genome-Assembly-Data-START## Assembly Date :: 18-NOV-2019 Assembly Method :: FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_haplotigs v. v1.0.3+ 1.Nov.2018; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-11-18; VGP assembly pipeline individual v. 1.5 Assembly Name :: sPriPec2.1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 61.91x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..173 /organism="Pristis pectinata" /mol_type="genomic DNA" /isolate="sPriPec2" /db_xref="taxon:685728" /sex="female" /tissue_type="blood" /dev_stage="juvenile" /country="USA: Tennessee Reef, Florida" /lat_lon="24.766667 N 80.75 W" /collection_date="01-Aug-2018" /collected_by="Bianca Prohaska" WGS WOXU01000001-WOXU01000173 WGS_SCAFLD CM019855-CM019900 WGS_SCAFLD CM019964 // LOCUS CABFWM020000000 3855 rc DNA linear VRT 25-MAR-2021 DEFINITION Aquila chrysaetos chrysaetos, whole genome shotgun sequencing project. ACCESSION CABFWM000000000 VERSION CABFWM000000000.2 DBLINK BioProject: PRJEB33298 BioSample: SAMEA994725 KEYWORDS WGS. SOURCE Aquila chrysaetos chrysaetos ORGANISM Aquila chrysaetos chrysaetos Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Accipitriformes; Accipitridae; Accipitrinae; Aquila. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (02-JUL-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 3855) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (23-MAR-2021) SC, Wellcome Sanger Institute, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT On Mar 26, 2021 this sequence version replaced CABFWM000000000.1. The Aquila chrysaetos chrysaetos whole genome shotgun (WGS) project has the project accession CABFWM000000000. This version of the project (02) has the accession number CABFWM020000000, and consists of sequences CABFWM020000001-CABFWM020003855. The assembly bAquChr1.4 is based on 60x PacBio data, 54x coverage 10X Genomics Chromium data, and 63x coverage Dovetail Hi-C data generated at the Wellcome Sanger Institute, and BioNano data generated by the DeepSeq facility at the University of Nottingham. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with Purge Haplotigs, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. The mitochondrial assembly was produced at The Rockefeller University using mitoVGP. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. As a result of the Hi-C data being sourced from a male bird it has not been possible to fully construct the W Chromosome for the female sample bAquChr1. Scaffolds identified as belonging to W have therefore been submitted as unordered fragments. The largest of these fragments has been designated as the W chromosome (SUPER_W) and all other W scaffolds labelled as W_unloc. FEATURES Location/Qualifiers source 1..3855 /organism="Aquila chrysaetos chrysaetos" /mol_type="genomic DNA" /sub_species="chrysaetos" /db_xref="taxon:223781" WGS CABFWM020000001-CABFWM020003855 // LOCUS UFQG04000000 116 rc DNA linear VRT 25-MAR-2021 DEFINITION Aquila chrysaetos chrysaetos, whole genome shotgun sequencing project. ACCESSION UFQG00000000 VERSION UFQG00000000.4 DBLINK BioProject: PRJEB27699 BioSample: SAMEA994725 KEYWORDS WGS. SOURCE Aquila chrysaetos chrysaetos ORGANISM Aquila chrysaetos chrysaetos Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Accipitriformes; Accipitridae; Accipitrinae; Aquila. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (10-JUL-2018) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 116) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (23-MAR-2021) SC, Wellcome Sanger Institute, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT On Mar 26, 2021 this sequence version replaced UFQG00000000.3. The Aquila chrysaetos chrysaetos whole genome shotgun (WGS) project has the project accession UFQG00000000. This version of the project (04) has the accession number UFQG04000000, and consists of sequences UFQG04000001-UFQG04000116. The assembly bAquChr1.4 is based on 60x PacBio data, 54x coverage 10X Genomics Chromium data, and 63x coverage Dovetail Hi-C data generated at the Wellcome Sanger Institute, and BioNano data generated by the DeepSeq facility at the University of Nottingham. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with Purge Haplotigs, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. The mitochondrial assembly was produced at The Rockefeller University using mitoVGP. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. As a result of the Hi-C data being sourced from a male bird it has not been possible to fully construct the W Chromosome for the female sample bAquChr1. Scaffolds identified as belonging to W have therefore been submitted as unordered fragments. The largest of these fragments has been designated as the W chromosome (SUPER_W) and all other W scaffolds labelled as W_unloc. FEATURES Location/Qualifiers source 1..116 /organism="Aquila chrysaetos chrysaetos" /mol_type="genomic DNA" /sub_species="chrysaetos" /db_xref="taxon:223781" WGS UFQG04000001-UFQG04000116 // LOCUS CAJNRB020000000 41 rc DNA linear MAM 25-MAR-2021 DEFINITION Canis lupus, whole genome shotgun sequencing project. ACCESSION CAJNRB000000000 VERSION CAJNRB000000000.2 DBLINK BioProject: PRJEB43200 BioSample: SAMEA7532739 KEYWORDS WGS. SOURCE Canis lupus (gray wolf) ORGANISM Canis lupus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. REFERENCE 1 (bases 1 to 41) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (19-FEB-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 41) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (18-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT On Mar 26, 2021 this sequence version replaced CAJNRB000000000.1. The Canis lupus whole genome shotgun (WGS) project has the project accession CAJNRB000000000. This version of the project (02) has the accession number CAJNRB020000000, and consists of sequences CAJNRB020000001-CAJNRB020000041. The assembly mCanLor1.2 is based on 28x PacBio data, 10X Genomics Chromium data, and Dovetail Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds are named by synteny to the GCA_014441545.1 assembly of Canis lupus familiaris. FEATURES Location/Qualifiers source 1..41 /organism="Canis lupus" /mol_type="genomic DNA" /db_xref="taxon:9612" WGS CAJNRB020000001-CAJNRB020000041 // LOCUS CAJOSX020000000 13 rc DNA linear INV 25-MAR-2021 DEFINITION Atethmia centrago, whole genome shotgun sequencing project. ACCESSION CAJOSX000000000 VERSION CAJOSX000000000.2 DBLINK BioProject: PRJEB43486 BioSample: SAMEA7520177 KEYWORDS WGS. SOURCE Atethmia centrago ORGANISM Atethmia centrago Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Atethmia. REFERENCE 1 (bases 1 to 13) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (08-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 13) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (18-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT On Mar 26, 2021 this sequence version replaced CAJOSX000000000.1. The Atethmia centrago whole genome shotgun (WGS) project has the project accession CAJOSX000000000. This version of the project (02) has the accession number CAJOSX020000000, and consists of sequences CAJOSX020000001-CAJOSX020000013. The assembly ilAteCent1.2 is based on 29x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..13 /organism="Atethmia centrago" /mol_type="genomic DNA" /db_xref="taxon:988071" WGS CAJOSX020000001-CAJOSX020000013 // LOCUS CAJPIA010000000 276 rc DNA linear INV 19-MAR-2021 DEFINITION Abrostola tripartita, whole genome shotgun sequencing project. ACCESSION CAJPIA000000000 VERSION CAJPIA000000000.1 DBLINK BioProject: PRJEB43729 BioSample: SAMEA7520667 KEYWORDS WGS. SOURCE Abrostola tripartita ORGANISM Abrostola tripartita Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Abrostola. REFERENCE 1 (bases 1 to 276) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (17-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Abrostola tripartita whole genome shotgun (WGS) project has the project accession CAJPIA000000000. This version of the project (01) has the accession number CAJPIA010000000, and consists of sequences CAJPIA010000001-CAJPIA010000276. The assembly ilAbrTrip1.1 is based on 54x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..276 /organism="Abrostola tripartita" /mol_type="genomic DNA" /db_xref="taxon:938171" WGS CAJPIA010000001-CAJPIA010000276 // LOCUS CAJPIB010000000 1319 rc DNA linear INV 19-MAR-2021 DEFINITION Rhagonycha fulva, whole genome shotgun sequencing project. ACCESSION CAJPIB000000000 VERSION CAJPIB000000000.1 DBLINK BioProject: PRJEB43727 BioSample: SAMEA7520319 KEYWORDS WGS. SOURCE Rhagonycha fulva ORGANISM Rhagonycha fulva Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Elateriformia; Elateroidea; Cantharidae; Cantharinae; Rhagonycha. REFERENCE 1 (bases 1 to 1319) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (17-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Rhagonycha fulva whole genome shotgun (WGS) project has the project accession CAJPIB000000000. This version of the project (01) has the accession number CAJPIB010000000, and consists of sequences CAJPIB010000001-CAJPIB010001319. The assembly icRhaFulv1.1 is based on 41x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Chromosome 1 contains a largely homogeneous, heterochromatic block at 24.45-95.85Mb, in accordance with existing karyotyping. This block consists of numerous scaffolds with high repeat content that can be localised to chromosome 1, but their order and orientation is unsure. It is likely that the assembly overexpands this region due to difficulties in identifying and removing haplotypic duplications. FEATURES Location/Qualifiers source 1..1319 /organism="Rhagonycha fulva" /mol_type="genomic DNA" /db_xref="taxon:41101" WGS CAJPIB010000001-CAJPIB010001319 // LOCUS CAJPHZ010000000 741 rc DNA linear INV 19-MAR-2021 DEFINITION Vespula germanica, whole genome shotgun sequencing project. ACCESSION CAJPHZ000000000 VERSION CAJPHZ000000000.1 DBLINK BioProject: PRJEB43725 BioSample: SAMEA7520501 KEYWORDS WGS. SOURCE Vespula germanica ORGANISM Vespula germanica Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Vespoidea; Vespidae; Vespinae; Vespula. REFERENCE 1 (bases 1 to 741) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (17-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Vespula germanica whole genome shotgun (WGS) project has the project accession CAJPHZ000000000. This version of the project (01) has the accession number CAJPHZ010000000, and consists of sequences CAJPHZ010000001-CAJPHZ010000741. The assembly iyVesGerm1.1 is based on 72x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..741 /organism="Vespula germanica" /mol_type="genomic DNA" /db_xref="taxon:30212" WGS CAJPHZ010000001-CAJPHZ010000741 // LOCUS CAJPHY010000000 11 rc DNA linear INV 19-MAR-2021 DEFINITION Vespula germanica, whole genome shotgun sequencing project. ACCESSION CAJPHY000000000 VERSION CAJPHY000000000.1 DBLINK BioProject: PRJEB43724 BioSample: SAMEA7520501 KEYWORDS WGS. SOURCE Vespula germanica ORGANISM Vespula germanica Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Vespoidea; Vespidae; Vespinae; Vespula. REFERENCE 1 (bases 1 to 11) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (17-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Vespula germanica whole genome shotgun (WGS) project has the project accession CAJPHY000000000. This version of the project (01) has the accession number CAJPHY010000000, and consists of sequences CAJPHY010000001-CAJPHY010000011. The assembly iyVesGerm1.1 is based on 72x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..11 /organism="Vespula germanica" /mol_type="genomic DNA" /db_xref="taxon:30212" WGS CAJPHY010000001-CAJPHY010000011 // LOCUS CAJPIC010000000 5 rc DNA linear INV 19-MAR-2021 DEFINITION Rhagonycha fulva, whole genome shotgun sequencing project. ACCESSION CAJPIC000000000 VERSION CAJPIC000000000.1 DBLINK BioProject: PRJEB43726 BioSample: SAMEA7520319 KEYWORDS WGS. SOURCE Rhagonycha fulva ORGANISM Rhagonycha fulva Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Elateriformia; Elateroidea; Cantharidae; Cantharinae; Rhagonycha. REFERENCE 1 (bases 1 to 5) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (17-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Rhagonycha fulva whole genome shotgun (WGS) project has the project accession CAJPIC000000000. This version of the project (01) has the accession number CAJPIC010000000, and consists of sequences CAJPIC010000001-CAJPIC010000005. The assembly icRhaFulv1.1 is based on 41x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. Chromosome 1 contains a largely homogeneous, heterochromatic block at 24.45-95.85Mb, in accordance with existing karyotyping. This block consists of numerous scaffolds with high repeat content that can be localised to chromosome 1, but their order and orientation is unsure. It is likely that the assembly overexpands this region due to difficulties in identifying and removing haplotypic duplications. FEATURES Location/Qualifiers source 1..5 /organism="Rhagonycha fulva" /mol_type="genomic DNA" /db_xref="taxon:41101" WGS CAJPIC010000001-CAJPIC010000005 // LOCUS CAJPHX010000000 1 rc DNA linear INV 19-MAR-2021 DEFINITION Abrostola tripartita, whole genome shotgun sequencing project. ACCESSION CAJPHX000000000 VERSION CAJPHX000000000.1 DBLINK BioProject: PRJEB43728 BioSample: SAMEA7520667 KEYWORDS WGS. SOURCE Abrostola tripartita ORGANISM Abrostola tripartita Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Abrostola. REFERENCE 1 (bases 1 to 1) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (17-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Abrostola tripartita whole genome shotgun (WGS) project has the project accession CAJPHX000000000. This version of the project (01) has the accession number CAJPHX010000000, and consists of sequence CAJPHX010000001. The assembly ilAbrTrip1.1 is based on 54x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1 /organism="Abrostola tripartita" /mol_type="genomic DNA" /db_xref="taxon:938171" /note="contig: ambig_34" WGS CAJPHX010000001 // LOCUS JAAVLY020000000 1255 rc DNA linear INV 22-MAR-2021 DEFINITION Pollicipes pollicipes isolate AB1234, whole genome shotgun sequencing project. ACCESSION JAAVLY000000000 VERSION JAAVLY000000000.2 DBLINK BioProject: PRJNA614970 BioSample: SAMN14444043 KEYWORDS WGS. SOURCE Pollicipes pollicipes ORGANISM Pollicipes pollicipes Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Hexanauplia; Cirripedia; Thoracica; Pedunculata; Scalpellomorpha; Pollicipedidae; Pollicipes. REFERENCE 1 (bases 1 to 1255) AUTHORS Bernot,J.P., Avdeev,P., Zamyatin,A., Alexeev,N., Perez-Losada,M. and Crandall,K.A. TITLE Genome sequence of the gooseneck barnacle Pollicipes pollicipes JOURNAL Unpublished REFERENCE 2 (bases 1 to 1255) AUTHORS Bernot,J.P., Avdeev,P., Zamyatin,A., Alexeev,N., Perez-Losada,M. and Crandall,K.A. TITLE Direct Submission JOURNAL Submitted (24-MAR-2020) Computational Biology Institute, George Washington University, 800 22nd Street NW Suite 7000, Washington, DC 20052, USA REFERENCE 3 (bases 1 to 1255) AUTHORS Bernot,J.P., Avdeev,P., Zamyatin,A., Alexeev,N., Perez-Losada,M. and Crandall,K.A. TITLE Direct Submission JOURNAL Submitted (12-FEB-2021) Computational Biology Institute, George Washington University, 800 22nd Street NW Suite 7000, Washington, DC 20052, USA COMMENT On Mar 10, 2021 this sequence version replaced gi:1919618690. The Pollicipes pollicipes whole genome shotgun (WGS) project has the project accession JAAVLY000000000. This version of the project (02) has the accession number JAAVLY020000000, and consists of sequences JAAVLY020000001-JAAVLY020001255. Mitochondrion added to the assembly on March 2021. ##Genome-Assembly-Data-START## Assembly Date :: 2020 Assembly Method :: FALCON v. 1.88; CANU v. 2.0 Assembly Name :: Ppol_2.1 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 160.0x Nuclear; 6000.0x Mito Sequencing Technology :: PacBio Sequel; Illumina NextSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1255 /organism="Pollicipes pollicipes" /mol_type="genomic DNA" /isolate="AB1234" /isolation_source="Intertidal rocks in small coastal promontory heavily exposed to wave action" /db_xref="taxon:41117" /tissue_type="whole adults" /dev_stage="adult" /country="Spain: Pontevedra, Nigran, Cape Monteferro" /lat_lon="42.155917 N 8.849778 W" /collection_date="04-Jan-2018" /collected_by="Marcos Perez-Losada" WGS JAAVLY020000001-JAAVLY020001255 WGS_SCAFLD CM029732 // LOCUS CAJNRC010000000 5536 rc DNA linear MAM 05-MAR-2021 DEFINITION Canis lupus, whole genome shotgun sequencing project. ACCESSION CAJNRC000000000 VERSION CAJNRC000000000.1 DBLINK BioProject: PRJEB43199 BioSample: SAMEA7532739 KEYWORDS WGS. SOURCE Canis lupus (gray wolf) ORGANISM Canis lupus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. REFERENCE 1 (bases 1 to 5536) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (19-FEB-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Canis lupus whole genome shotgun (WGS) project has the project accession CAJNRC000000000. This version of the project (01) has the accession number CAJNRC010000000, and consists of sequences CAJNRC010000001-CAJNRC010005536. The assembly mCanLor1.1 is based on 28x PacBio data, 10X Genomics Chromium data, and Dovetail Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds are named by synteny to the GCA_014441545.1 assembly of Canis lupus familiaris. FEATURES Location/Qualifiers source 1..5536 /organism="Canis lupus" /mol_type="genomic DNA" /db_xref="taxon:9612" WGS CAJNRC010000001-CAJNRC010005536 // LOCUS CAJOSY010000000 8321 rc DNA linear INV 17-MAR-2021 DEFINITION Atethmia centrago, whole genome shotgun sequencing project. ACCESSION CAJOSY000000000 VERSION CAJOSY000000000.1 DBLINK BioProject: PRJEB43485 BioSample: SAMEA7520177 KEYWORDS WGS. SOURCE Atethmia centrago ORGANISM Atethmia centrago Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Xyleninae; Atethmia. REFERENCE 1 (bases 1 to 8321) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (08-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Atethmia centrago whole genome shotgun (WGS) project has the project accession CAJOSY000000000. This version of the project (01) has the accession number CAJOSY010000000, and consists of sequences CAJOSY010000001-CAJOSY010008321. The assembly ilAteCent1.1 is based on 29x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..8321 /organism="Atethmia centrago" /mol_type="genomic DNA" /db_xref="taxon:988071" WGS CAJOSY010000001-CAJOSY010008321 // LOCUS CAIGJN020000000 3668 rc DNA linear VRT 11-MAR-2021 DEFINITION Erithacus rubecula, whole genome shotgun sequencing project. ACCESSION CAIGJN000000000 VERSION CAIGJN000000000.2 DBLINK BioProject: PRJEB38657 BioSample: SAMEA4760689 KEYWORDS WGS. SOURCE Erithacus rubecula (European robin) ORGANISM Erithacus rubecula Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Turdidae; Erithacus. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (03-JUN-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 3668) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (03-MAR-2021) SC, Wellcome Sanger Institute, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT On Mar 21, 2021 this sequence version replaced CAIGJN000000000.1. The Erithacus rubecula whole genome shotgun (WGS) project has the project accession CAIGJN000000000. This version of the project (02) has the accession number CAIGJN020000000, and consists of sequences CAIGJN020000001-CAIGJN020003668. The assembly bEriRub2.2 is based on 41x PacBio data, 22x 10X Genomics Chromium data, and 42x Dovetail Hi-C data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig separation with purge_dups, 10X based scaffolding with scaff10x, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..3668 /organism="Erithacus rubecula" /mol_type="genomic DNA" /db_xref="taxon:37610" WGS CAIGJN020000001-CAIGJN020003668 // LOCUS CAJOSR010000000 696 rc DNA linear INV 17-MAR-2021 DEFINITION Lysandra bellargus, whole genome shotgun sequencing project. ACCESSION CAJOSR000000000 VERSION CAJOSR000000000.1 DBLINK BioProject: PRJEB43475 BioSample: SAMEA7523471 KEYWORDS WGS. SOURCE Lysandra bellargus (Adonis blue) ORGANISM Lysandra bellargus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra. REFERENCE 1 (bases 1 to 696) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (08-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Lysandra bellargus whole genome shotgun (WGS) project has the project accession CAJOSR000000000. This version of the project (01) has the accession number CAJOSR010000000, and consists of sequences CAJOSR010000001-CAJOSR010000696. The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..696 /organism="Lysandra bellargus" /mol_type="genomic DNA" /db_xref="taxon:138070" WGS CAJOSR010000001-CAJOSR010000696 // LOCUS CAJOSU010000000 1054 rc DNA linear INV 17-MAR-2021 DEFINITION Mimas tiliae, whole genome shotgun sequencing project. ACCESSION CAJOSU000000000 VERSION CAJOSU000000000.1 DBLINK BioProject: PRJEB43492 BioSample: SAMEA7520521 KEYWORDS WGS. SOURCE Mimas tiliae ORGANISM Mimas tiliae Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Smerinthinae; Smerinthini; Mimas. REFERENCE 1 (bases 1 to 1054) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (08-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Mimas tiliae whole genome shotgun (WGS) project has the project accession CAJOSU000000000. This version of the project (01) has the accession number CAJOSU010000000, and consists of sequences CAJOSU010000001-CAJOSU010001054. The assembly ilMimTili1.1 is based on 37x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..1054 /organism="Mimas tiliae" /mol_type="genomic DNA" /db_xref="taxon:522848" WGS CAJOSU010000001-CAJOSU010001054 // LOCUS CAJOSV010000000 242 rc DNA linear INV 17-MAR-2021 DEFINITION Lycaena phlaeas, whole genome shotgun sequencing project. ACCESSION CAJOSV000000000 VERSION CAJOSV000000000.1 DBLINK BioProject: PRJEB43474 BioSample: SAMEA7523293 KEYWORDS WGS. SOURCE Lycaena phlaeas (common copper) ORGANISM Lycaena phlaeas Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Lycaeninae; Lycaena. REFERENCE 1 (bases 1 to 242) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (08-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Lycaena phlaeas whole genome shotgun (WGS) project has the project accession CAJOSV000000000. This version of the project (01) has the accession number CAJOSV010000000, and consists of sequences CAJOSV010000001-CAJOSV010000242. The assembly ilLycPhla1.1 is based on 55x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..242 /organism="Lycaena phlaeas" /mol_type="genomic DNA" /db_xref="taxon:282391" WGS CAJOSV010000001-CAJOSV010000242 // LOCUS CAJOSN010000000 175 rc DNA linear INV 17-MAR-2021 DEFINITION Maniola jurtina, whole genome shotgun sequencing project. ACCESSION CAJOSN000000000 VERSION CAJOSN000000000.1 DBLINK BioProject: PRJEB43490 BioSample: SAMEA7523158 KEYWORDS WGS. SOURCE Maniola jurtina (meadow brown) ORGANISM Maniola jurtina Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Satyrinae; Satyrini; Maniolina; Maniola. REFERENCE 1 (bases 1 to 175) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (08-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Maniola jurtina whole genome shotgun (WGS) project has the project accession CAJOSN000000000. This version of the project (01) has the accession number CAJOSN010000000, and consists of sequences CAJOSN010000001-CAJOSN010000175. The assembly ilManJurt1.1 is based on 76x PacBio data, 10X Genomics Chromium data, and Qiagen Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..175 /organism="Maniola jurtina" /mol_type="genomic DNA" /db_xref="taxon:191418" WGS CAJOSN010000001-CAJOSN010000175 // LOCUS CAJOSZ010000000 1284 rc DNA linear INV 17-MAR-2021 DEFINITION Pheosia tremula, whole genome shotgun sequencing project. ACCESSION CAJOSZ000000000 VERSION CAJOSZ000000000.1 DBLINK BioProject: PRJEB43494 BioSample: SAMEA7520523 KEYWORDS WGS. SOURCE Pheosia tremula ORGANISM Pheosia tremula Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Notodontidae; Notodontinae; Pheosia. REFERENCE 1 (bases 1 to 1284) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (08-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Pheosia tremula whole genome shotgun (WGS) project has the project accession CAJOSZ000000000. This version of the project (01) has the accession number CAJOSZ010000000, and consists of sequences CAJOSZ010000001-CAJOSZ010001284. The assembly ilPheTrem1.1 is based on 73x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..1284 /organism="Pheosia tremula" /mol_type="genomic DNA" /db_xref="taxon:988019" WGS CAJOSZ010000001-CAJOSZ010001284 // LOCUS CAJOSS010000000 554 rc DNA linear INV 17-MAR-2021 DEFINITION Bombus pascuorum, whole genome shotgun sequencing project. ACCESSION CAJOSS000000000 VERSION CAJOSS000000000.1 DBLINK BioProject: PRJEB43482 BioSample: SAMEA7520484 KEYWORDS WGS. SOURCE Bombus pascuorum ORGANISM Bombus pascuorum Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Apidae; Bombus; Thoracobombus. REFERENCE 1 (bases 1 to 554) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (08-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Bombus pascuorum whole genome shotgun (WGS) project has the project accession CAJOSS000000000. This version of the project (01) has the accession number CAJOSS010000000, and consists of sequences CAJOSS010000001-CAJOSS010000554. The assembly iyBomPasc1.1 is based on 28x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..554 /organism="Bombus pascuorum" /mol_type="genomic DNA" /db_xref="taxon:65598" WGS CAJOSS010000001-CAJOSS010000554 // LOCUS CAJOSM010000000 1337 rc DNA linear INV 17-MAR-2021 DEFINITION Pyrochroa serraticornis, whole genome shotgun sequencing project. ACCESSION CAJOSM000000000 VERSION CAJOSM000000000.1 DBLINK BioProject: PRJEB43483 BioSample: SAMEA7524259 KEYWORDS WGS. SOURCE Pyrochroa serraticornis ORGANISM Pyrochroa serraticornis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Pyrochroidae; Pyrochroa. REFERENCE 1 (bases 1 to 1337) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (08-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Pyrochroa serraticornis whole genome shotgun (WGS) project has the project accession CAJOSM000000000. This version of the project (01) has the accession number CAJOSM010000000, and consists of sequences CAJOSM010000001-CAJOSM010001337. The assembly icPyrSerr1.1 is based on 26x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..1337 /organism="Pyrochroa serraticornis" /mol_type="genomic DNA" /db_xref="taxon:346838" WGS CAJOSM010000001-CAJOSM010001337 // LOCUS CAJOSJ010000000 227 rc DNA linear INV 17-MAR-2021 DEFINITION Hecatera dysodea, whole genome shotgun sequencing project. ACCESSION CAJOSJ000000000 VERSION CAJOSJ000000000.1 DBLINK BioProject: PRJEB43488 BioSample: SAMEA7521514 KEYWORDS WGS. SOURCE Hecatera dysodea ORGANISM Hecatera dysodea Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Hadeninae; Hecatera. REFERENCE 1 (bases 1 to 227) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (08-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Hecatera dysodea whole genome shotgun (WGS) project has the project accession CAJOSJ000000000. This version of the project (01) has the accession number CAJOSJ010000000, and consists of sequences CAJOSJ010000001-CAJOSJ010000227. The assembly ilHecDyso1.1 is based on 47x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..227 /organism="Hecatera dysodea" /mol_type="genomic DNA" /db_xref="taxon:988125" WGS CAJOSJ010000001-CAJOSJ010000227 // LOCUS CAJOSO010000000 24 rc DNA linear INV 17-MAR-2021 DEFINITION Bombus hortorum, whole genome shotgun sequencing project. ACCESSION CAJOSO000000000 VERSION CAJOSO000000000.1 DBLINK BioProject: PRJEB43479 BioSample: SAMEA7520483 KEYWORDS WGS. SOURCE Bombus hortorum ORGANISM Bombus hortorum Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Apidae; Bombus; Megabombus. REFERENCE 1 (bases 1 to 24) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (08-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Bombus hortorum whole genome shotgun (WGS) project has the project accession CAJOSO000000000. This version of the project (01) has the accession number CAJOSO010000000, and consists of sequences CAJOSO010000001-CAJOSO010000024. The assembly iyBomHort1.1 is based on 82x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..24 /organism="Bombus hortorum" /mol_type="genomic DNA" /db_xref="taxon:85660" WGS CAJOSO010000001-CAJOSO010000024 // LOCUS CAJOSQ010000000 64 rc DNA linear INV 17-MAR-2021 DEFINITION Bombus pascuorum, whole genome shotgun sequencing project. ACCESSION CAJOSQ000000000 VERSION CAJOSQ000000000.1 DBLINK BioProject: PRJEB43481 BioSample: SAMEA7520484 KEYWORDS WGS. SOURCE Bombus pascuorum ORGANISM Bombus pascuorum Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Apidae; Bombus; Thoracobombus. REFERENCE 1 (bases 1 to 64) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (08-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Bombus pascuorum whole genome shotgun (WGS) project has the project accession CAJOSQ000000000. This version of the project (01) has the accession number CAJOSQ010000000, and consists of sequences CAJOSQ010000001-CAJOSQ010000064. The assembly iyBomPasc1.1 is based on 28x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..64 /organism="Bombus pascuorum" /mol_type="genomic DNA" /db_xref="taxon:65598" WGS CAJOSQ010000001-CAJOSQ010000064 // LOCUS CAJOSH010000000 41 rc DNA linear INV 17-MAR-2021 DEFINITION Bombus hortorum, whole genome shotgun sequencing project. ACCESSION CAJOSH000000000 VERSION CAJOSH000000000.1 DBLINK BioProject: PRJEB43480 BioSample: SAMEA7520483 KEYWORDS WGS. SOURCE Bombus hortorum ORGANISM Bombus hortorum Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Apidae; Bombus; Megabombus. REFERENCE 1 (bases 1 to 41) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (08-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Bombus hortorum whole genome shotgun (WGS) project has the project accession CAJOSH000000000. This version of the project (01) has the accession number CAJOSH010000000, and consists of sequences CAJOSH010000001-CAJOSH010000041. The assembly iyBomHort1.1 is based on 82x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..41 /organism="Bombus hortorum" /mol_type="genomic DNA" /db_xref="taxon:85660" WGS CAJOSH010000001-CAJOSH010000041 // LOCUS CAJOSL010000000 29 rc DNA linear INV 17-MAR-2021 DEFINITION Pyrochroa serraticornis, whole genome shotgun sequencing project. ACCESSION CAJOSL000000000 VERSION CAJOSL000000000.1 DBLINK BioProject: PRJEB43484 BioSample: SAMEA7524259 KEYWORDS WGS. SOURCE Pyrochroa serraticornis ORGANISM Pyrochroa serraticornis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Pyrochroidae; Pyrochroa. REFERENCE 1 (bases 1 to 29) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (08-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Pyrochroa serraticornis whole genome shotgun (WGS) project has the project accession CAJOSL000000000. This version of the project (01) has the accession number CAJOSL010000000, and consists of sequences CAJOSL010000001-CAJOSL010000029. The assembly icPyrSerr1.1 is based on 26x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..29 /organism="Pyrochroa serraticornis" /mol_type="genomic DNA" /db_xref="taxon:346838" WGS CAJOSL010000001-CAJOSL010000029 // LOCUS CAJOSW010000000 93 rc DNA linear INV 17-MAR-2021 DEFINITION Lysandra bellargus, whole genome shotgun sequencing project. ACCESSION CAJOSW000000000 VERSION CAJOSW000000000.1 DBLINK BioProject: PRJEB43476 BioSample: SAMEA7523471 KEYWORDS WGS. SOURCE Lysandra bellargus (Adonis blue) ORGANISM Lysandra bellargus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra. REFERENCE 1 (bases 1 to 93) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (08-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Lysandra bellargus whole genome shotgun (WGS) project has the project accession CAJOSW000000000. This version of the project (01) has the accession number CAJOSW010000000, and consists of sequences CAJOSW010000001-CAJOSW010000093. The assembly ilLysBell1.1 is based on 52x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..93 /organism="Lysandra bellargus" /mol_type="genomic DNA" /db_xref="taxon:138070" WGS CAJOSW010000001-CAJOSW010000093 // LOCUS CAJOSK010000000 10 rc DNA linear INV 17-MAR-2021 DEFINITION Bombus campestris, whole genome shotgun sequencing project. ACCESSION CAJOSK000000000 VERSION CAJOSK000000000.1 DBLINK BioProject: PRJEB43478 BioSample: SAMEA7520482 KEYWORDS WGS. SOURCE Bombus campestris (Psithyrus campestris) ORGANISM Bombus campestris Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Apidae; Bombus; Psithyrus. REFERENCE 1 (bases 1 to 10) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (08-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Bombus campestris whole genome shotgun (WGS) project has the project accession CAJOSK000000000. This version of the project (01) has the accession number CAJOSK010000000, and consists of sequences CAJOSK010000001-CAJOSK010000010. The assembly iyBomCamp1.1 is based on 83x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..10 /organism="Bombus campestris" /mol_type="genomic DNA" /db_xref="taxon:207624" WGS CAJOSK010000001-CAJOSK010000010 // LOCUS CAJOST010000000 8 rc DNA linear INV 17-MAR-2021 DEFINITION Hecatera dysodea, whole genome shotgun sequencing project. ACCESSION CAJOST000000000 VERSION CAJOST000000000.1 DBLINK BioProject: PRJEB43487 BioSample: SAMEA7521514 KEYWORDS WGS. SOURCE Hecatera dysodea ORGANISM Hecatera dysodea Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Hadeninae; Hecatera. REFERENCE 1 (bases 1 to 8) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (08-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Hecatera dysodea whole genome shotgun (WGS) project has the project accession CAJOST000000000. This version of the project (01) has the accession number CAJOST010000000, and consists of sequences CAJOST010000001-CAJOST010000008. The assembly ilHecDyso1.1 is based on 47x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..8 /organism="Hecatera dysodea" /mol_type="genomic DNA" /db_xref="taxon:988125" WGS CAJOST010000001-CAJOST010000008 // LOCUS CAJOTA010000000 6 rc DNA linear INV 17-MAR-2021 DEFINITION Pheosia tremula, whole genome shotgun sequencing project. ACCESSION CAJOTA000000000 VERSION CAJOTA000000000.1 DBLINK BioProject: PRJEB43493 BioSample: SAMEA7520523 KEYWORDS WGS. SOURCE Pheosia tremula ORGANISM Pheosia tremula Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Notodontidae; Notodontinae; Pheosia. REFERENCE 1 (bases 1 to 6) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (08-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Pheosia tremula whole genome shotgun (WGS) project has the project accession CAJOTA000000000. This version of the project (01) has the accession number CAJOTA010000000, and consists of sequences CAJOTA010000001-CAJOTA010000006. The assembly ilPheTrem1.1 is based on 73x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..6 /organism="Pheosia tremula" /mol_type="genomic DNA" /db_xref="taxon:988019" WGS CAJOTA010000001-CAJOTA010000006 // LOCUS CAJOSP010000000 1 rc DNA linear INV 17-MAR-2021 DEFINITION Maniola jurtina, whole genome shotgun sequencing project. ACCESSION CAJOSP000000000 VERSION CAJOSP000000000.1 DBLINK BioProject: PRJEB43489 BioSample: SAMEA7523158 KEYWORDS WGS. SOURCE Maniola jurtina (meadow brown) ORGANISM Maniola jurtina Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Satyrinae; Satyrini; Maniolina; Maniola. REFERENCE 1 (bases 1 to 1) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (08-MAR-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Maniola jurtina whole genome shotgun (WGS) project has the project accession CAJOSP000000000. This version of the project (01) has the accession number CAJOSP010000000, and consists of sequence CAJOSP010000001. The assembly ilManJurt1.1 is based on 76x PacBio data, 10X Genomics Chromium data, and Qiagen Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1 /organism="Maniola jurtina" /mol_type="genomic DNA" /db_xref="taxon:191418" /note="contig: SUPER_W_unloc_1" WGS CAJOSP010000001 // LOCUS JADKXW010000000 24312 rc DNA linear VRT 10-MAR-2021 DEFINITION Bubo scandiacus, whole genome shotgun sequencing project. ACCESSION JADKXW000000000 VERSION JADKXW000000000.1 DBLINK BioProject: PRJNA666618 BioSample: SAMN16326210 KEYWORDS WGS. SOURCE Bubo scandiacus (Snowy owl) ORGANISM Bubo scandiacus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Strigiformes; Strigidae; Bubo. REFERENCE 1 (bases 1 to 24312) AUTHORS Culibrk,L., Ashkani,J., Haddrath,O., Paton,T., Scherer,S., Aziz,N. and Jones,S.J. TITLE The genome of the Snowy Owl (Bubo scandiacus) JOURNAL Unpublished REFERENCE 2 (bases 1 to 24312) AUTHORS Culibrk,L., Ashkani,J., Haddrath,O., Paton,T., Scherer,S., Aziz,N. and Jones,S.J. TITLE Direct Submission JOURNAL Submitted (08-OCT-2020) Genome Sciences Centre, GSC CanSeq, 570 West 7th Avenue, Vancouver, BC V5Z 4E6, Canada COMMENT The Bubo scandiacus whole genome shotgun (WGS) project has the project accession JADKXW000000000. This version of the project (01) has the accession number JADKXW010000000, and consists of sequences JADKXW010000001-JADKXW010024312. ##Genome-Assembly-Data-START## Assembly Method :: Supernova v. 2.1.1 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 43.0x Sequencing Technology :: HiSeq X ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..24312 /organism="Bubo scandiacus" /mol_type="genomic DNA" /specimen_voucher="1B-3886" /db_xref="taxon:371907" /sex="female" /tissue_type="Unspecified mixture of tissues" /dev_stage="adult" /country="Canada: Brockville, Ontario" WGS JADKXW010000001-JADKXW010024312 WGS_SCAFLD MU208584-MU210895 // LOCUS JAFDUT010000000 1083 rc DNA linear INV 09-MAR-2021 DEFINITION Coelopa frigida isolate SI0201, whole genome shotgun sequencing project. ACCESSION JAFDUT000000000 VERSION JAFDUT000000000.1 DBLINK BioProject: PRJNA688905 BioSample: SAMN17191201 KEYWORDS WGS. SOURCE Coelopa frigida ORGANISM Coelopa frigida Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Sciomyzoidea; Coelopidae; Coelopa. REFERENCE 1 (bases 1 to 1083) AUTHORS Merot,C., Berdan,E., Cayuela,H., Djambazian,H., Ferchaud,A.-L., Laporte,M., Normandeau,E., Ragoussis,J., Wellenreuther,M. and Bernatchez,L. TITLE Chromosomal rearrangements represent modular cassettes for local adaptation across different geographic scales JOURNAL Unpublished REFERENCE 2 (bases 1 to 1083) AUTHORS Merot,C., Normandeau,E., Berdan,E., Djambazian,H., Ragoussis,J., Wellenreuther,M. and Bernatchez,L. TITLE Direct Submission JOURNAL Submitted (31-DEC-2020) Departement de Biologie (IBIS), Universite Laval, 1030 Av. de la Medecine, Pavillon Charles-Eugene Marchand, QUEBEC, QC G1V 0A6, Canada COMMENT The Coelopa frigida whole genome shotgun (WGS) project has the project accession JAFDUT000000000. This version of the project (01) has the accession number JAFDUT010000000, and consists of sequences JAFDUT010000001-JAFDUT010001083. ##Genome-Assembly-Data-START## Assembly Method :: FALCON v. sept-2017 Assembly Name :: UL_Cfrigida_v1.1 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 63.0x Sequencing Technology :: PacBio Sequel ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1083 /organism="Coelopa frigida" /mol_type="genomic DNA" /isolate="SI0201" /db_xref="taxon:169498" /sex="female" /tissue_type="whole body" /country="Canada: Quebec, St Irenee" /collection_date="2016-12" /collected_by="C. Merot" WGS JAFDUT010000001-JAFDUT010001083 WGS_SCAFLD CM029561-CM029566 // LOCUS JADDRP020000000 617 rc DNA linear VRT 09-MAR-2021 DEFINITION Hirundo rustica isolate bHirRus1, whole genome shotgun sequencing project. ACCESSION JADDRP000000000 VERSION JADDRP000000000.2 DBLINK BioProject: PRJNA636192 BioSample: SAMN14675488 KEYWORDS WGS. SOURCE Hirundo rustica (Barn swallow) ORGANISM Hirundo rustica Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Hirundinidae; Hirundo. REFERENCE 1 (bases 1 to 617) AUTHORS Secomandi,S., Formenti,G., Rhie,A., Fedrigo,O., Mountcastle,J., Haase,B., Balacco,J., Collins,J., Chow,W., Howe,K., Gallo,G.R., Gianfranceschi,L., Bonisoli-Alquati,A., Saino,N. and Jarvis,E.D. TITLE Hirundo rustica (Barn swallow) genome, bHirRus1, primary haplotype v2 JOURNAL Unpublished REFERENCE 2 (bases 1 to 617) AUTHORS Formenti,G., Rhie,A., Fedrigo,O., Mountcastle,J., Haase,B., Balacco,J., Collins,J., Chow,W., Howe,K., Secomandi,S., Gallo,G.R., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (25-OCT-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA REFERENCE 3 (bases 1 to 617) AUTHORS Secomandi,S., Formenti,G., Rhie,A., Fedrigo,O., Mountcastle,J., Haase,B., Balacco,J., Collins,J., Chow,W., Howe,K., Gallo,G.R., Gianfranceschi,L., Bonisoli-Alquati,A., Saino,N. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (28-FEB-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT On Mar 2, 2021 this sequence version replaced JADDRP000000000.1. The Hirundo rustica whole genome shotgun (WGS) project has the project accession JADDRP000000000. This version of the project (02) has the accession number JADDRP020000000, and consists of sequences JADDRP020000001-JADDRP020000617. ##Genome-Assembly-Data-START## Assembly Date :: 11-FEB-2020 Assembly Method :: FALCON v. DX 2.0.1; FALCON-Unzip v. DX 1.2.1; purge_dups v. DX 19-08-10; scaff10X v. DX 2.0.3; bionano Solve v. DX 3.4.0; Salsa2 HiC v. DX 2.2.0; Arrow polishing and gap filling v. DX 7.0.1.1; Longranger Align v. DX 2.2.2.1; freebayes v. DX 19-07-11; gEVAL manual curation v. 2020-02-11; VGP assembly pipeline v. 1.6; Manual Curation BUSCO v. 2021-01-11 Assembly Name :: bHirRus1.pri.v2 Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 51.15x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..617 /organism="Hirundo rustica" /mol_type="genomic DNA" /isolate="bHirRus1" /db_xref="taxon:43150" /sex="female" /tissue_type="muscle" /dev_stage="adult" /country="Italy" /collection_date="22-May-2018" /collected_by="Giulio Formenti, Nicola Saino" WGS JADDRP020000001-JADDRP020000617 WGS_SCAFLD CM026847-CM026885 // LOCUS JADDRQ020000000 2477 rc DNA linear VRT 02-MAR-2021 DEFINITION Hirundo rustica isolate bHirRus1, whole genome shotgun sequencing project. ACCESSION JADDRQ000000000 VERSION JADDRQ000000000.2 DBLINK BioProject: PRJNA636191 BioSample: SAMN14675488 KEYWORDS WGS. SOURCE Hirundo rustica (Barn swallow) ORGANISM Hirundo rustica Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Hirundinidae; Hirundo. REFERENCE 1 (bases 1 to 2477) AUTHORS Secomandi,S., Formenti,G., Rhie,A., Fedrigo,O., Mountcastle,J., Haase,B., Balacco,J., Collins,J., Chow,W., Howe,K., Gallo,G.R., Gianfranceschi,L., Bonisoli-Alquati,A., Saino,N. and Jarvis,E.D. TITLE Hirundo rustica (Barn swallow) genome, bHirRus1, alternate haplotype v2 JOURNAL Unpublished REFERENCE 2 (bases 1 to 2477) AUTHORS Formenti,G., Rhie,A., Mountcastle,J., Haase,B., Balacco,J., Collins,J., Chow,W., Howe,K., Secomandi,S., Gallo,G.R., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (24-OCT-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA REFERENCE 3 (bases 1 to 2477) AUTHORS Secomandi,S., Formenti,G., Rhie,A., Fedrigo,O., Mountcastle,J., Haase,B., Balacco,J., Collins,J., Chow,W., Howe,K., Gallo,G.R., Gianfranceschi,L., Bonisoli-Alquati,A., Saino,N. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (01-MAR-2021) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT On Mar 2, 2021 this sequence version replaced JADDRQ000000000.1. The Hirundo rustica whole genome shotgun (WGS) project has the project accession JADDRQ000000000. This version of the project (02) has the accession number JADDRQ020000000, and consists of sequences JADDRQ020000001-JADDRQ020002477. ##Genome-Assembly-Data-START## Assembly Date :: 15-OCT-2020 Assembly Method :: FALCON v. DX 2.0.1; FALCON-Unzip v. DX 1.2.1; purge_dups v. DX 19-08-10; scaff10X v. DX 2.0.3; bionano Solve v. DX 3.4.0; Salsa2 HiC v. DX 2.2.0; Arrow polishing and gap filling v. DX 7.0.1.1; Longranger Align v. DX 2.2.2.1; freebayes v. DX 19-07-11; gEVAL manual curation v. 2020-10-15; VGP assembly pipeline v. 1.6; Manual Curation BUSCO v. 2021-01-11 Assembly Name :: bHirRus1.alt.v2 Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 51.15x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..2477 /organism="Hirundo rustica" /mol_type="genomic DNA" /isolate="bHirRus1" /db_xref="taxon:43150" /sex="female" /tissue_type="muscle" /dev_stage="adult" /country="Italy" /collection_date="2018-05-22" /collected_by="Giulio Formenti, Nicola Saino" WGS JADDRQ020000001-JADDRQ020002477 // LOCUS JAEQML010000000 144278 rc DNA linear INV 24-FEB-2021 DEFINITION Pissodes strobi isolate WPW_Pupae_La90_L1_ON, whole genome shotgun sequencing project. ACCESSION JAEQML000000000 VERSION JAEQML000000000.1 DBLINK BioProject: PRJNA588625 BioSample: SAMN13254964 KEYWORDS WGS. SOURCE Pissodes strobi ORGANISM Pissodes strobi Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Curculionidae; Molytinae; Pissodini; Pissodes. REFERENCE 1 (bases 1 to 144278) AUTHORS Whitehill,J.G.A., Gagalova,K., Yuen,M.S., Culibrk,L., Lin,D., Keeling,C., Coombe,L., Jackman,S.D., Warren,R.L., Ritland,C., Birol,I., Bohlmann,J. and Jones,S.J.M. TITLE The genome of the White Pine Weevil (Pissodes strobi) JOURNAL Unpublished REFERENCE 2 (bases 1 to 144278) AUTHORS Whitehill,J.G.A., Gagalova,K., Yuen,M.S., Culibrk,L., Lin,D., Keeling,C., Coombe,L., Jackman,S.D., Warren,R.L., Ritland,C., Birol,I., Bohlmann,J. and Jones,S.J.M. TITLE Direct Submission JOURNAL Submitted (12-JAN-2021) Canada's Michael Smith Genome Sciences Centre, BC Cancer, 570 7th Ave, Vancouver, British Columbia V5Z 4S6, Canada COMMENT The Pissodes strobi whole genome shotgun (WGS) project has the project accession JAEQML000000000. This version of the project (01) has the accession number JAEQML010000000, and consists of sequences JAEQML010000001-JAEQML010144278. ##Genome-Assembly-Data-START## Assembly Date :: DEC-2019 Assembly Method :: Supernova v. 2.1.1 Assembly Name :: GSC_weevil_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 70.0x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..144278 /organism="Pissodes strobi" /mol_type="genomic DNA" /isolate="WPW_Pupae_La90_L1_ON" /db_xref="taxon:49927" /tissue_type="whole pupae" /dev_stage="Pupal" WGS JAEQML010000001-JAEQML010144278 WGS_SCAFLD MU181914-MU204163 // LOCUS CAJNIT010000000 1185 rc DNA linear INV 18-FEB-2021 DEFINITION Eristalis tenax, whole genome shotgun sequencing project. ACCESSION CAJNIT000000000 VERSION CAJNIT000000000.1 DBLINK BioProject: PRJEB43007 BioSample: SAMEA7520042 KEYWORDS WGS. SOURCE Eristalis tenax (drone fly) ORGANISM Eristalis tenax Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Syrphoidea; Syrphidae; Eristalinae; Eristalini; Eristalis. REFERENCE 1 (bases 1 to 1185) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (09-FEB-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Eristalis tenax whole genome shotgun (WGS) project has the project accession CAJNIT000000000. This version of the project (01) has the accession number CAJNIT010000000, and consists of sequences CAJNIT010000001-CAJNIT010001185. The assembly idEriTena2.1 is based on 36x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..1185 /organism="Eristalis tenax" /mol_type="genomic DNA" /db_xref="taxon:198635" WGS CAJNIT010000001-CAJNIT010001185 // LOCUS CAJNIV010000000 218 rc DNA linear INV 18-FEB-2021 DEFINITION Boloria selene, whole genome shotgun sequencing project. ACCESSION CAJNIV000000000 VERSION CAJNIV000000000.1 DBLINK BioProject: PRJEB43010 BioSample: SAMEA7523131 KEYWORDS WGS. SOURCE Boloria selene (Clossiana selene) ORGANISM Boloria selene Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Heliconiinae; Argynnini; Boloria. REFERENCE 1 (bases 1 to 218) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (09-FEB-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Boloria selene whole genome shotgun (WGS) project has the project accession CAJNIV000000000. This version of the project (01) has the accession number CAJNIV010000000, and consists of sequences CAJNIV010000001-CAJNIV010000218. The assembly ilBolSele5.1 is based on 60x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..218 /organism="Boloria selene" /mol_type="genomic DNA" /db_xref="taxon:191398" WGS CAJNIV010000001-CAJNIV010000218 // LOCUS CAJNIW010000000 80 rc DNA linear INV 18-FEB-2021 DEFINITION Pieris napi, whole genome shotgun sequencing project. ACCESSION CAJNIW000000000 VERSION CAJNIW000000000.1 DBLINK BioProject: PRJEB43011 BioSample: SAMEA7523140 KEYWORDS WGS. SOURCE Pieris napi ORGANISM Pieris napi Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Pieridae; Pierinae; Pieris. REFERENCE 1 (bases 1 to 80) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (09-FEB-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Pieris napi whole genome shotgun (WGS) project has the project accession CAJNIW000000000. This version of the project (01) has the accession number CAJNIW010000000, and consists of sequences CAJNIW010000001-CAJNIW010000080. The assembly ilPieNapi4.1 is based on 91x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds are named by synteny to the ilPieNapi1.1 assembly of the same species. FEATURES Location/Qualifiers source 1..80 /organism="Pieris napi" /mol_type="genomic DNA" /db_xref="taxon:78633" WGS CAJNIW010000001-CAJNIW010000080 // LOCUS CAJNIU010000000 150 rc DNA linear INV 18-FEB-2021 DEFINITION Eristalis tenax, whole genome shotgun sequencing project. ACCESSION CAJNIU000000000 VERSION CAJNIU000000000.1 DBLINK BioProject: PRJEB43008 BioSample: SAMEA7520042 KEYWORDS WGS. SOURCE Eristalis tenax (drone fly) ORGANISM Eristalis tenax Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Syrphoidea; Syrphidae; Eristalinae; Eristalini; Eristalis. REFERENCE 1 (bases 1 to 150) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (09-FEB-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Eristalis tenax whole genome shotgun (WGS) project has the project accession CAJNIU000000000. This version of the project (01) has the accession number CAJNIU010000000, and consists of sequences CAJNIU010000001-CAJNIU010000150. The assembly idEriTena2.1 is based on 36x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..150 /organism="Eristalis tenax" /mol_type="genomic DNA" /db_xref="taxon:198635" WGS CAJNIU010000001-CAJNIU010000150 // LOCUS CAJNIX010000000 23 rc DNA linear INV 18-FEB-2021 DEFINITION Pieris napi, whole genome shotgun sequencing project. ACCESSION CAJNIX000000000 VERSION CAJNIX000000000.1 DBLINK BioProject: PRJEB43012 BioSample: SAMEA7523140 KEYWORDS WGS. SOURCE Pieris napi ORGANISM Pieris napi Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Pieridae; Pierinae; Pieris. REFERENCE 1 (bases 1 to 23) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (09-FEB-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Pieris napi whole genome shotgun (WGS) project has the project accession CAJNIX000000000. This version of the project (01) has the accession number CAJNIX010000000, and consists of sequences CAJNIX010000001-CAJNIX010000023. The assembly ilPieNapi4.1 is based on 91x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds are named by synteny to the ilPieNapi1.1 assembly of the same species. FEATURES Location/Qualifiers source 1..23 /organism="Pieris napi" /mol_type="genomic DNA" /db_xref="taxon:78633" WGS CAJNIX010000001-CAJNIX010000023 // LOCUS JAFCHQ010000000 206 rc DNA linear VRT 17-FEB-2021 DEFINITION Acanthisitta chloris isolate bAcaChl1, whole genome shotgun sequencing project. ACCESSION JAFCHQ000000000 VERSION JAFCHQ000000000.1 DBLINK BioProject: PRJNA561954 BioSample: SAMN16442762 KEYWORDS WGS. SOURCE Acanthisitta chloris (rifleman) ORGANISM Acanthisitta chloris Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Acanthisittidae; Acanthisitta. REFERENCE 1 (bases 1 to 206) AUTHORS Gilbert,M.T.P., Fedrigo,O., Mountcastle,J., Balacco,J., Formenti,G., Pelan,S., Sims,Y., Cain,K., Scofield,P., Howe,K., Rhie,A. and Jarvis,E.D. TITLE Acanthisitta chloris (Rifleman) genome, bAcaChl1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 206) AUTHORS Gilbert,M.T.P., Fedrigo,O., Mountcastle,J., Balacco,J., Formenti,G., Pelan,S., Sims,Y., Cain,K., Scofield,P., Howe,K., Rhie,A. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (06-DEC-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Acanthisitta chloris whole genome shotgun (WGS) project has the project accession JAFCHQ000000000. This version of the project (01) has the accession number JAFCHQ010000000, and consists of sequences JAFCHQ010000001-JAFCHQ010000206. ##Genome-Assembly-Data-START## Assembly Date :: 27-NOV-2019 Assembly Method :: FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_haplotigs v. v1.0.3+ 1.Nov.2018; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. SMRTLink7.0.1; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-11-27; VGP assembly pipeline individual v. 1.5 Assembly Name :: bAcaChl1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 65.46x Sequencing Technology :: PacBio Sequel I CLR; llumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..206 /organism="Acanthisitta chloris" /mol_type="genomic DNA" /isolate="bAcaChl1" /db_xref="taxon:57068" /sex="female" /tissue_type="blood" /dev_stage="adult" /country="New Zealand" /lat_lon="43.464458 S 171.791763 E" /collection_date="01-Dec-2010" /collected_by="Paul Scofield" WGS JAFCHQ010000001-JAFCHQ010000206 WGS_SCAFLD CM029183-CM029221 // LOCUS CAJHUB010000000 810 rc DNA linear MAM 13-FEB-2021 DEFINITION Nyctereutes procyonoides isolate TBG_1078, whole genome shotgun sequencing project. ACCESSION CAJHUB000000000 VERSION CAJHUB000000000.1 DBLINK BioProject: PRJEB41734 BioSample: SAMEA7690874 Sequence Read Archive: ERR4922190, ERR4922193, ERR4922194, ERR4968407 KEYWORDS WGS. SOURCE Nyctereutes procyonoides (raccoon dog) ORGANISM Nyctereutes procyonoides Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Nyctereutes. REFERENCE 1 (bases 1 to 810) CONSRTM Molecular Ecology Group TITLE Direct Submission JOURNAL Submitted (10-DEC-2020) Senckenber Biodiversity and Climate Research Centre Frankfurt, Molecular Ecology Group, Georg-Voigt-Strasse 14-16, DE-60325, Frankfurt am Main, Germany COMMENT The Nyctereutes procyonoides whole genome shotgun (WGS) project has the project accession CAJHUB000000000. This version of the project (01) has the accession number CAJHUB010000000, and consists of sequences CAJHUB010000001-CAJHUB010000810. Here we present the draft genome assembly of the raccoon dog (Nyctereutes procyonoides), a species belonging to the Canidae family, native from eastern Asia but introduced in Europe. Analyses are based on PacBio Sequel II and Oxford Nanopore Technologies sequencing (ONT) as well as Omni-C data. The genome was assembled by using Flye and gene predictions using GeMoMa. Coverages: 94.5X for PacBio; 11.7 for ONT and 69.5X for Omni-C. FEATURES Location/Qualifiers source 1..810 /organism="Nyctereutes procyonoides" /mol_type="genomic DNA" /isolate="TBG_1078" /db_xref="taxon:34880" WGS CAJHUB010000001-CAJHUB010000810 // LOCUS CAJMZV010000000 238 rc DNA linear INV 13-FEB-2021 DEFINITION Amphipyra tragopoginis, whole genome shotgun sequencing project. ACCESSION CAJMZV000000000 VERSION CAJMZV000000000.1 DBLINK BioProject: PRJEB42876 BioSample: SAMEA7520175 KEYWORDS WGS. SOURCE Amphipyra tragopoginis ORGANISM Amphipyra tragopoginis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Amphipyra. REFERENCE 1 (bases 1 to 238) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-FEB-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Amphipyra tragopoginis whole genome shotgun (WGS) project has the project accession CAJMZV000000000. This version of the project (01) has the accession number CAJMZV010000000, and consists of sequences CAJMZV010000001-CAJMZV010000238. The assembly ilAmpTrag2.1 is based on 41x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..238 /organism="Amphipyra tragopoginis" /mol_type="genomic DNA" /db_xref="taxon:689058" WGS CAJMZV010000001-CAJMZV010000238 // LOCUS CAJMZR010000000 1390 rc DNA linear INV 13-FEB-2021 DEFINITION Tachina fera, whole genome shotgun sequencing project. ACCESSION CAJMZR000000000 VERSION CAJMZR000000000.1 DBLINK BioProject: PRJEB42873 BioSample: SAMEA7520333 KEYWORDS WGS. SOURCE Tachina fera ORGANISM Tachina fera Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Oestroidea; Tachinidae; Tachininae; Tachinini; Tachina. REFERENCE 1 (bases 1 to 1390) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-FEB-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Tachina fera whole genome shotgun (WGS) project has the project accession CAJMZR000000000. This version of the project (01) has the accession number CAJMZR010000000, and consists of sequences CAJMZR010000001-CAJMZR010001390. The assembly idTacFera2.1 is based on 41x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..1390 /organism="Tachina fera" /mol_type="genomic DNA" /db_xref="taxon:631328" WGS CAJMZR010000001-CAJMZR010001390 // LOCUS CAJNAF010000000 836 rc DNA linear INV 13-FEB-2021 DEFINITION Mellicta athalia, whole genome shotgun sequencing project. ACCESSION CAJNAF000000000 VERSION CAJNAF000000000.1 DBLINK BioProject: PRJEB42888 BioSample: SAMEA7523312 KEYWORDS WGS. SOURCE Mellicta athalia ORGANISM Mellicta athalia Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Nymphalinae. REFERENCE 1 (bases 1 to 836) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-FEB-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Mellicta athalia whole genome shotgun (WGS) project has the project accession CAJNAF000000000. This version of the project (01) has the accession number CAJNAF010000000, and consists of sequences CAJNAF010000001-CAJNAF010000836. The assembly ilMelAtha1.1 is based on 30x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..836 /organism="Mellicta athalia" /mol_type="genomic DNA" /db_xref="taxon:113330" WGS CAJNAF010000001-CAJNAF010000836 // LOCUS CAJNAL010000000 585 rc DNA linear INV 13-FEB-2021 DEFINITION Spilosoma lubricipeda, whole genome shotgun sequencing project. ACCESSION CAJNAL000000000 VERSION CAJNAL000000000.1 DBLINK BioProject: PRJEB42895 BioSample: SAMEA7520525 KEYWORDS WGS. SOURCE Spilosoma lubricipeda ORGANISM Spilosoma lubricipeda Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Erebidae; Arctiinae; Spilosoma. REFERENCE 1 (bases 1 to 585) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-FEB-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Spilosoma lubricipeda whole genome shotgun (WGS) project has the project accession CAJNAL000000000. This version of the project (01) has the accession number CAJNAL010000000, and consists of sequences CAJNAL010000001-CAJNAL010000585. The assembly ilSpiLubr1.1 is based on 39x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..585 /organism="Spilosoma lubricipeda" /mol_type="genomic DNA" /db_xref="taxon:875880" WGS CAJNAL010000001-CAJNAL010000585 // LOCUS CAJNAB010000000 1395 rc DNA linear INV 13-FEB-2021 DEFINITION Laothoe populi, whole genome shotgun sequencing project. ACCESSION CAJNAB000000000 VERSION CAJNAB000000000.1 DBLINK BioProject: PRJEB42884 BioSample: SAMEA7520519 KEYWORDS WGS. SOURCE Laothoe populi ORGANISM Laothoe populi Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Smerinthinae; Smerinthini; Laothoe. REFERENCE 1 (bases 1 to 1395) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-FEB-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Laothoe populi whole genome shotgun (WGS) project has the project accession CAJNAB000000000. This version of the project (01) has the accession number CAJNAB010000000, and consists of sequences CAJNAB010000001-CAJNAB010001395. The assembly ilLaoPopu1.1 is based on 28x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..1395 /organism="Laothoe populi" /mol_type="genomic DNA" /db_xref="taxon:522836" WGS CAJNAB010000001-CAJNAB010001395 // LOCUS CAJNAE010000000 1273 rc DNA linear INV 13-FEB-2021 DEFINITION Lysandra coridon, whole genome shotgun sequencing project. ACCESSION CAJNAE000000000 VERSION CAJNAE000000000.1 DBLINK BioProject: PRJEB42887 BioSample: SAMEA7523305 KEYWORDS WGS. SOURCE Lysandra coridon ORGANISM Lysandra coridon Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra. REFERENCE 1 (bases 1 to 1273) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-FEB-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Lysandra coridon whole genome shotgun (WGS) project has the project accession CAJNAE000000000. This version of the project (01) has the accession number CAJNAE010000000, and consists of sequences CAJNAE010000001-CAJNAE010001273. The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..1273 /organism="Lysandra coridon" /mol_type="genomic DNA" /db_xref="taxon:268709" WGS CAJNAE010000001-CAJNAE010001273 // LOCUS CAJMZO010000000 224 rc DNA linear INV 13-FEB-2021 DEFINITION Noctua pronuba, whole genome shotgun sequencing project. ACCESSION CAJMZO000000000 VERSION CAJMZO000000000.1 DBLINK BioProject: PRJEB42861 BioSample: SAMEA7519837 KEYWORDS WGS. SOURCE Noctua pronuba (large yellow underwing) ORGANISM Noctua pronuba Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Noctuinae; Noctuini; Noctua. REFERENCE 1 (bases 1 to 224) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-FEB-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Noctua pronuba whole genome shotgun (WGS) project has the project accession CAJMZO000000000. This version of the project (01) has the accession number CAJMZO010000000, and consists of sequences CAJMZO010000001-CAJMZO010000224. The assembly ilNocPron1.1 is based on 47x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..224 /organism="Noctua pronuba" /mol_type="genomic DNA" /db_xref="taxon:214277" WGS CAJMZO010000001-CAJMZO010000224 // LOCUS CAJNAH010000000 509 rc DNA linear INV 13-FEB-2021 DEFINITION Melitaea cinxia, whole genome shotgun sequencing project. ACCESSION CAJNAH000000000 VERSION CAJNAH000000000.1 DBLINK BioProject: PRJEB42890 BioSample: SAMEA7523475 KEYWORDS WGS. SOURCE Melitaea cinxia (Glanville fritillary) ORGANISM Melitaea cinxia Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Nymphalinae; Melitaea. REFERENCE 1 (bases 1 to 509) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-FEB-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Melitaea cinxia whole genome shotgun (WGS) project has the project accession CAJNAH000000000. This version of the project (01) has the accession number CAJNAH010000000, and consists of sequences CAJNAH010000001-CAJNAH010000509. The assembly ilMelCinx1.1 is based on 28x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..509 /organism="Melitaea cinxia" /mol_type="genomic DNA" /db_xref="taxon:113334" WGS CAJNAH010000001-CAJNAH010000509 // LOCUS CAJMZT010000000 464 rc DNA linear INV 13-FEB-2021 DEFINITION Xylota sylvarum, whole genome shotgun sequencing project. ACCESSION CAJMZT000000000 VERSION CAJMZT000000000.1 DBLINK BioProject: PRJEB42875 BioSample: SAMEA7520173 KEYWORDS WGS. SOURCE Xylota sylvarum ORGANISM Xylota sylvarum Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Syrphoidea; Syrphidae; Eristalinae; Xylotini; Xylota. REFERENCE 1 (bases 1 to 464) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-FEB-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Xylota sylvarum whole genome shotgun (WGS) project has the project accession CAJMZT000000000. This version of the project (01) has the accession number CAJMZT010000000, and consists of sequences CAJMZT010000001-CAJMZT010000464. The assembly idXylSylv2.1 is based on 34x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..464 /organism="Xylota sylvarum" /mol_type="genomic DNA" /db_xref="taxon:374264" WGS CAJMZT010000001-CAJMZT010000464 // LOCUS CAJMZY010000000 347 rc DNA linear INV 13-FEB-2021 DEFINITION Deilephila porcellus, whole genome shotgun sequencing project. ACCESSION CAJMZY000000000 VERSION CAJMZY000000000.1 DBLINK BioProject: PRJEB42880 BioSample: SAMEA7520522 KEYWORDS WGS. SOURCE Deilephila porcellus ORGANISM Deilephila porcellus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Macroglossinae; Macroglossini; Deilephila. REFERENCE 1 (bases 1 to 347) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-FEB-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Deilephila porcellus whole genome shotgun (WGS) project has the project accession CAJMZY000000000. This version of the project (01) has the accession number CAJMZY010000000, and consists of sequences CAJMZY010000001-CAJMZY010000347. The assembly ilDeiPorc1.1 is based on 40x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..347 /organism="Deilephila porcellus" /mol_type="genomic DNA" /db_xref="taxon:644661" WGS CAJMZY010000001-CAJMZY010000347 // LOCUS CAJMZN010000000 273 rc DNA linear INV 13-FEB-2021 DEFINITION Vanessa cardui, whole genome shotgun sequencing project. ACCESSION CAJMZN000000000 VERSION CAJMZN000000000.1 DBLINK BioProject: PRJEB42870 BioSample: SAMEA7523147 KEYWORDS WGS. SOURCE Vanessa cardui ORGANISM Vanessa cardui Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Nymphalinae; Vanessa. REFERENCE 1 (bases 1 to 273) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-FEB-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Vanessa cardui whole genome shotgun (WGS) project has the project accession CAJMZN000000000. This version of the project (01) has the accession number CAJMZN010000000, and consists of sequences CAJMZN010000001-CAJMZN010000273. The assembly ilVanCard2.1 is based on 25x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..273 /organism="Vanessa cardui" /mol_type="genomic DNA" /db_xref="taxon:171605" WGS CAJMZN010000001-CAJMZN010000273 // LOCUS CAJNAA010000000 4022 rc DNA linear INV 13-FEB-2021 DEFINITION Ennomos fuscantarius, whole genome shotgun sequencing project. ACCESSION CAJNAA000000000 VERSION CAJNAA000000000.1 DBLINK BioProject: PRJEB42883 BioSample: SAMEA7520185 KEYWORDS WGS. SOURCE Ennomos fuscantarius (dusky thorn) ORGANISM Ennomos fuscantarius Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Ennominae; Ennomos. REFERENCE 1 (bases 1 to 4022) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-FEB-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Ennomos fuscantarius whole genome shotgun (WGS) project has the project accession CAJNAA000000000. This version of the project (01) has the accession number CAJNAA010000000, and consists of sequences CAJNAA010000001-CAJNAA010004022. The assembly ilEnnFusc2.1 is based on 52x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..4022 /organism="Ennomos fuscantarius" /mol_type="genomic DNA" /db_xref="taxon:722662" WGS CAJNAA010000001-CAJNAA010004022 // LOCUS CAJNAI010000000 179 rc DNA linear INV 13-FEB-2021 DEFINITION Nymphalis polychloros, whole genome shotgun sequencing project. ACCESSION CAJNAI000000000 VERSION CAJNAI000000000.1 DBLINK BioProject: PRJEB42892 BioSample: SAMEA7523477 KEYWORDS WGS. SOURCE Nymphalis polychloros (blackleg tortoiseshell) ORGANISM Nymphalis polychloros Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Nymphalinae; Nymphalis; Nymphalis. REFERENCE 1 (bases 1 to 179) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-FEB-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Nymphalis polychloros whole genome shotgun (WGS) project has the project accession CAJNAI000000000. This version of the project (01) has the accession number CAJNAI010000000, and consists of sequences CAJNAI010000001-CAJNAI010000179. The assembly ilNymPoly1.1 is based on 36x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..179 /organism="Nymphalis polychloros" /mol_type="genomic DNA" /db_xref="taxon:171594" WGS CAJNAI010000001-CAJNAI010000179 // LOCUS CAJNAN010000000 157 rc DNA linear INV 13-FEB-2021 DEFINITION Tinea trinotella, whole genome shotgun sequencing project. ACCESSION CAJNAN000000000 VERSION CAJNAN000000000.1 DBLINK BioProject: PRJEB42897 BioSample: SAMEA7519924 KEYWORDS WGS. SOURCE Tinea trinotella ORGANISM Tinea trinotella Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Tineoidea; Tineidae; Tineinae; Tinea. REFERENCE 1 (bases 1 to 157) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-FEB-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Tinea trinotella whole genome shotgun (WGS) project has the project accession CAJNAN000000000. This version of the project (01) has the accession number CAJNAN010000000, and consists of sequences CAJNAN010000001-CAJNAN010000157. The assembly ilTinTrin1.1 is based on 33x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..157 /organism="Tinea trinotella" /mol_type="genomic DNA" /db_xref="taxon:1594354" WGS CAJNAN010000001-CAJNAN010000157 // LOCUS CAJMZW010000000 196 rc DNA linear INV 13-FEB-2021 DEFINITION Colias croceus, whole genome shotgun sequencing project. ACCESSION CAJMZW000000000 VERSION CAJMZW000000000.1 DBLINK BioProject: PRJEB42879 BioSample: SAMEA7523360 KEYWORDS WGS. SOURCE Colias croceus (clouded yellow) ORGANISM Colias croceus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Pieridae; Coliadinae; Colias. REFERENCE 1 (bases 1 to 196) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-FEB-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Colias croceus whole genome shotgun (WGS) project has the project accession CAJMZW000000000. This version of the project (01) has the accession number CAJMZW010000000, and consists of sequences CAJMZW010000001-CAJMZW010000196. The assembly ilColCroc2.1 is based on 68x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..196 /organism="Colias croceus" /mol_type="genomic DNA" /db_xref="taxon:72248" WGS CAJMZW010000001-CAJMZW010000196 // LOCUS CAJMZQ010000000 114 rc DNA linear INV 13-FEB-2021 DEFINITION Xylota sylvarum, whole genome shotgun sequencing project. ACCESSION CAJMZQ000000000 VERSION CAJMZQ000000000.1 DBLINK BioProject: PRJEB42874 BioSample: SAMEA7520173 KEYWORDS WGS. SOURCE Xylota sylvarum ORGANISM Xylota sylvarum Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Syrphoidea; Syrphidae; Eristalinae; Xylotini; Xylota. REFERENCE 1 (bases 1 to 114) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-FEB-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Xylota sylvarum whole genome shotgun (WGS) project has the project accession CAJMZQ000000000. This version of the project (01) has the accession number CAJMZQ010000000, and consists of sequences CAJMZQ010000001-CAJMZQ010000114. The assembly idXylSylv2.1 is based on 34x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..114 /organism="Xylota sylvarum" /mol_type="genomic DNA" /db_xref="taxon:374264" WGS CAJMZQ010000001-CAJMZQ010000114 // LOCUS CAJNAG010000000 13 rc DNA linear INV 13-FEB-2021 DEFINITION Mellicta athalia, whole genome shotgun sequencing project. ACCESSION CAJNAG000000000 VERSION CAJNAG000000000.1 DBLINK BioProject: PRJEB42889 BioSample: SAMEA7523312 KEYWORDS WGS. SOURCE Mellicta athalia ORGANISM Mellicta athalia Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Nymphalinae. REFERENCE 1 (bases 1 to 13) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-FEB-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Mellicta athalia whole genome shotgun (WGS) project has the project accession CAJNAG000000000. This version of the project (01) has the accession number CAJNAG010000000, and consists of sequences CAJNAG010000001-CAJNAG010000013. The assembly ilMelAtha1.1 is based on 30x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..13 /organism="Mellicta athalia" /mol_type="genomic DNA" /db_xref="taxon:113330" WGS CAJNAG010000001-CAJNAG010000013 // LOCUS CAJNAJ010000000 5 rc DNA linear INV 13-FEB-2021 DEFINITION Nymphalis polychloros, whole genome shotgun sequencing project. ACCESSION CAJNAJ000000000 VERSION CAJNAJ000000000.1 DBLINK BioProject: PRJEB42893 BioSample: SAMEA7523477 KEYWORDS WGS. SOURCE Nymphalis polychloros (blackleg tortoiseshell) ORGANISM Nymphalis polychloros Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Nymphalinae; Nymphalis; Nymphalis. REFERENCE 1 (bases 1 to 5) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-FEB-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Nymphalis polychloros whole genome shotgun (WGS) project has the project accession CAJNAJ000000000. This version of the project (01) has the accession number CAJNAJ010000000, and consists of sequences CAJNAJ010000001-CAJNAJ010000005. The assembly ilNymPoly1.1 is based on 36x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..5 /organism="Nymphalis polychloros" /mol_type="genomic DNA" /db_xref="taxon:171594" WGS CAJNAJ010000001-CAJNAJ010000005 // LOCUS CAJMZM010000000 17 rc DNA linear INV 13-FEB-2021 DEFINITION Noctua pronuba, whole genome shotgun sequencing project. ACCESSION CAJMZM000000000 VERSION CAJMZM000000000.1 DBLINK BioProject: PRJEB42860 BioSample: SAMEA7519837 KEYWORDS WGS. SOURCE Noctua pronuba (large yellow underwing) ORGANISM Noctua pronuba Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Noctuinae; Noctuini; Noctua. REFERENCE 1 (bases 1 to 17) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-FEB-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Noctua pronuba whole genome shotgun (WGS) project has the project accession CAJMZM000000000. This version of the project (01) has the accession number CAJMZM010000000, and consists of sequences CAJMZM010000001-CAJMZM010000017. The assembly ilNocPron1.1 is based on 47x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..17 /organism="Noctua pronuba" /mol_type="genomic DNA" /db_xref="taxon:214277" WGS CAJMZM010000001-CAJMZM010000017 // LOCUS CAJNAC010000000 9 rc DNA linear INV 13-FEB-2021 DEFINITION Lysandra coridon, whole genome shotgun sequencing project. ACCESSION CAJNAC000000000 VERSION CAJNAC000000000.1 DBLINK BioProject: PRJEB42886 BioSample: SAMEA7523305 KEYWORDS WGS. SOURCE Lysandra coridon ORGANISM Lysandra coridon Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Lysandra. REFERENCE 1 (bases 1 to 9) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-FEB-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Lysandra coridon whole genome shotgun (WGS) project has the project accession CAJNAC000000000. This version of the project (01) has the accession number CAJNAC010000000, and consists of sequences CAJNAC010000001-CAJNAC010000009. The assembly ilLysCori1.1 is based on 47x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..9 /organism="Lysandra coridon" /mol_type="genomic DNA" /db_xref="taxon:268709" WGS CAJNAC010000001-CAJNAC010000009 // LOCUS CAJMZP010000000 4 rc DNA linear INV 13-FEB-2021 DEFINITION Vanessa cardui, whole genome shotgun sequencing project. ACCESSION CAJMZP000000000 VERSION CAJMZP000000000.1 DBLINK BioProject: PRJEB42869 BioSample: SAMEA7523147 KEYWORDS WGS. SOURCE Vanessa cardui ORGANISM Vanessa cardui Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Nymphalinae; Vanessa. REFERENCE 1 (bases 1 to 4) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-FEB-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Vanessa cardui whole genome shotgun (WGS) project has the project accession CAJMZP000000000. This version of the project (01) has the accession number CAJMZP010000000, and consists of sequences CAJMZP010000001-CAJMZP010000004. The assembly ilVanCard2.1 is based on 25x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..4 /organism="Vanessa cardui" /mol_type="genomic DNA" /db_xref="taxon:171605" WGS CAJMZP010000001-CAJMZP010000004 // LOCUS CAJMZZ010000000 5 rc DNA linear INV 13-FEB-2021 DEFINITION Ennomos fuscantarius, whole genome shotgun sequencing project. ACCESSION CAJMZZ000000000 VERSION CAJMZZ000000000.1 DBLINK BioProject: PRJEB42882 BioSample: SAMEA7520185 KEYWORDS WGS. SOURCE Ennomos fuscantarius (dusky thorn) ORGANISM Ennomos fuscantarius Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Ennominae; Ennomos. REFERENCE 1 (bases 1 to 5) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-FEB-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Ennomos fuscantarius whole genome shotgun (WGS) project has the project accession CAJMZZ000000000. This version of the project (01) has the accession number CAJMZZ010000000, and consists of sequences CAJMZZ010000001-CAJMZZ010000005. The assembly ilEnnFusc2.1 is based on 52x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..5 /organism="Ennomos fuscantarius" /mol_type="genomic DNA" /db_xref="taxon:722662" WGS CAJMZZ010000001-CAJMZZ010000005 // LOCUS CAJNAK010000000 6 rc DNA linear INV 13-FEB-2021 DEFINITION Spilosoma lubricipeda, whole genome shotgun sequencing project. ACCESSION CAJNAK000000000 VERSION CAJNAK000000000.1 DBLINK BioProject: PRJEB42894 BioSample: SAMEA7520525 KEYWORDS WGS. SOURCE Spilosoma lubricipeda ORGANISM Spilosoma lubricipeda Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Erebidae; Arctiinae; Spilosoma. REFERENCE 1 (bases 1 to 6) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-FEB-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Spilosoma lubricipeda whole genome shotgun (WGS) project has the project accession CAJNAK000000000. This version of the project (01) has the accession number CAJNAK010000000, and consists of sequences CAJNAK010000001-CAJNAK010000006. The assembly ilSpiLubr1.1 is based on 39x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..6 /organism="Spilosoma lubricipeda" /mol_type="genomic DNA" /db_xref="taxon:875880" WGS CAJNAK010000001-CAJNAK010000006 // LOCUS CAJMZS010000000 6 rc DNA linear INV 13-FEB-2021 DEFINITION Tachina fera, whole genome shotgun sequencing project. ACCESSION CAJMZS000000000 VERSION CAJMZS000000000.1 DBLINK BioProject: PRJEB42872 BioSample: SAMEA7520333 KEYWORDS WGS. SOURCE Tachina fera ORGANISM Tachina fera Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Oestroidea; Tachinidae; Tachininae; Tachinini; Tachina. REFERENCE 1 (bases 1 to 6) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-FEB-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Tachina fera whole genome shotgun (WGS) project has the project accession CAJMZS000000000. This version of the project (01) has the accession number CAJMZS010000000, and consists of sequences CAJMZS010000001-CAJMZS010000006. The assembly idTacFera2.1 is based on 41x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..6 /organism="Tachina fera" /mol_type="genomic DNA" /db_xref="taxon:631328" WGS CAJMZS010000001-CAJMZS010000006 // LOCUS CAJNAD010000000 3 rc DNA linear INV 13-FEB-2021 DEFINITION Laothoe populi, whole genome shotgun sequencing project. ACCESSION CAJNAD000000000 VERSION CAJNAD000000000.1 DBLINK BioProject: PRJEB42885 BioSample: SAMEA7520519 KEYWORDS WGS. SOURCE Laothoe populi ORGANISM Laothoe populi Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Smerinthinae; Smerinthini; Laothoe. REFERENCE 1 (bases 1 to 3) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-FEB-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Laothoe populi whole genome shotgun (WGS) project has the project accession CAJNAD000000000. This version of the project (01) has the accession number CAJNAD010000000, and consists of sequences CAJNAD010000001-CAJNAD010000003. The assembly ilLaoPopu1.1 is based on 28x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..3 /organism="Laothoe populi" /mol_type="genomic DNA" /db_xref="taxon:522836" WGS CAJNAD010000001-CAJNAD010000003 // LOCUS CAJNAM010000000 1 rc DNA linear INV 13-FEB-2021 DEFINITION Tinea trinotella, whole genome shotgun sequencing project. ACCESSION CAJNAM000000000 VERSION CAJNAM000000000.1 DBLINK BioProject: PRJEB42896 BioSample: SAMEA7519924 KEYWORDS WGS. SOURCE Tinea trinotella ORGANISM Tinea trinotella Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Tineoidea; Tineidae; Tineinae; Tinea. REFERENCE 1 (bases 1 to 1) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-FEB-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Tinea trinotella whole genome shotgun (WGS) project has the project accession CAJNAM000000000. This version of the project (01) has the accession number CAJNAM010000000, and consists of sequence CAJNAM010000001. The assembly ilTinTrin1.1 is based on 33x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1 /organism="Tinea trinotella" /mol_type="genomic DNA" /db_xref="taxon:1594354" /note="contig: scaffold_33_ctg1" WGS CAJNAM010000001 // LOCUS CAJMZU010000000 1 rc DNA linear INV 13-FEB-2021 DEFINITION Amphipyra tragopoginis, whole genome shotgun sequencing project. ACCESSION CAJMZU000000000 VERSION CAJMZU000000000.1 DBLINK BioProject: PRJEB42877 BioSample: SAMEA7520175 KEYWORDS WGS. SOURCE Amphipyra tragopoginis ORGANISM Amphipyra tragopoginis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Amphipyrinae; Amphipyra. REFERENCE 1 (bases 1 to 1) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-FEB-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Amphipyra tragopoginis whole genome shotgun (WGS) project has the project accession CAJMZU000000000. This version of the project (01) has the accession number CAJMZU010000000, and consists of sequence CAJMZU010000001. The assembly ilAmpTrag2.1 is based on 41x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1 /organism="Amphipyra tragopoginis" /mol_type="genomic DNA" /db_xref="taxon:689058" /note="contig: scaffold_45_ctg1" WGS CAJMZU010000001 // LOCUS CAJMZX010000000 1 rc DNA linear INV 13-FEB-2021 DEFINITION Deilephila porcellus, whole genome shotgun sequencing project. ACCESSION CAJMZX000000000 VERSION CAJMZX000000000.1 DBLINK BioProject: PRJEB42881 BioSample: SAMEA7520522 KEYWORDS WGS. SOURCE Deilephila porcellus ORGANISM Deilephila porcellus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Macroglossinae; Macroglossini; Deilephila. REFERENCE 1 (bases 1 to 1) CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (03-FEB-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The Deilephila porcellus whole genome shotgun (WGS) project has the project accession CAJMZX000000000. This version of the project (01) has the accession number CAJMZX010000000, and consists of sequence CAJMZX010000001. The assembly ilDeiPorc1.1 is based on 40x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1 /organism="Deilephila porcellus" /mol_type="genomic DNA" /db_xref="taxon:644661" /note="contig: scaffold_33_ctg1" WGS CAJMZX010000001 // LOCUS JAFCHR010000000 2879 rc DNA linear VRT 10-FEB-2021 DEFINITION Acanthisitta chloris isolate bAcaChl1, whole genome shotgun sequencing project. ACCESSION JAFCHR000000000 VERSION JAFCHR000000000.1 DBLINK BioProject: PRJNA561955 BioSample: SAMN16442762 KEYWORDS WGS. SOURCE Acanthisitta chloris (rifleman) ORGANISM Acanthisitta chloris Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Acanthisittidae; Acanthisitta. REFERENCE 1 (bases 1 to 2879) AUTHORS Gilbert,M.T.P., Fedrigo,O., Mountcastle,J., Balacco,J., Formenti,G., Phelan,S., Sims,Y., Cain,K., Scofield,P., Howe,K., Rhie,A. and Jarvis,E.D. TITLE Acanthisitta chloris (Rifleman) genome, bAcaChl1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 2879) AUTHORS Gilbert,M.T.P., Fedrigo,O., Mountcastle,J., Balacco,J., Formenti,G., Phelan,S., Sims,Y., Cain,K., Scofield,P., Howe,K., Rhie,A. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (06-DEC-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Acanthisitta chloris whole genome shotgun (WGS) project has the project accession JAFCHR000000000. This version of the project (01) has the accession number JAFCHR010000000, and consists of sequences JAFCHR010000001-JAFCHR010002879. ##Genome-Assembly-Data-START## Assembly Date :: 27-NOV-2019 Assembly Method :: FALCON DNANexus v. 1.9.0; FALCON-Unzip DNANexus v. 1.0.6; purge_haplotigs v. v1.0.3+ 1.Nov.2018; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-11-27; VGP assembly pipeline individual v. 1.5 Assembly Name :: bAcaChl1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 65.46x Sequencing Technology :: PacBio Sequel I CLR; llumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..2879 /organism="Acanthisitta chloris" /mol_type="genomic DNA" /isolate="bAcaChl1" /db_xref="taxon:57068" /sex="female" /tissue_type="blood" /dev_stage="adult" /country="New Zealand" /lat_lon="43.464458 S 171.791763 E" /collection_date="01-Dec-2010" /collected_by="Paul Scofield" WGS JAFCHR010000001-JAFCHR010002879 // LOCUS CAJJIN010000000 1 rc DNA linear INV 01-FEB-2021 DEFINITION Cyaniris semiargus, whole genome shotgun sequencing project. ACCESSION CAJJIN000000000 VERSION CAJJIN000000000.1 DBLINK BioProject: PRJEB41908 BioSample: SAMEA7523311 KEYWORDS WGS. SOURCE Cyaniris semiargus ORGANISM Cyaniris semiargus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Cyaniris. REFERENCE 1 (bases 1 to 1) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (19-JAN-2021) SC, Wellcome Sanger Institute, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Cyaniris semiargus whole genome shotgun (WGS) project has the project accession CAJJIN000000000. This version of the project (01) has the accession number CAJJIN010000000, and consists of sequence CAJJIN010000001. The assembly ilCyaSemi1.1 is based on 42x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1 /organism="Cyaniris semiargus" /mol_type="genomic DNA" /db_xref="taxon:988025" /note="contig: scaffold_56_ctg1" WGS CAJJIN010000001 // LOCUS CAJJIO010000000 1 rc DNA linear INV 01-FEB-2021 DEFINITION Syritta pipiens, whole genome shotgun sequencing project. ACCESSION CAJJIO000000000 VERSION CAJJIO000000000.1 DBLINK BioProject: PRJEB41892 BioSample: SAMEA7520166 KEYWORDS WGS. SOURCE Syritta pipiens ORGANISM Syritta pipiens Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Syrphoidea; Syrphidae; Eristalinae; Xylotini; Syritta. REFERENCE 1 (bases 1 to 1) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (19-JAN-2021) SC, Wellcome Sanger Institute, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Syritta pipiens whole genome shotgun (WGS) project has the project accession CAJJIO000000000. This version of the project (01) has the accession number CAJJIO010000000, and consists of sequence CAJJIO010000001. The assembly idSyrPipi1.1 is based on 44x PacBio data, 10X Genomics Chromium data, and Qiagen Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1 /organism="Syritta pipiens" /mol_type="genomic DNA" /db_xref="taxon:34682" /note="contig: scaffold_19_ctg1" WGS CAJJIO010000001 // LOCUS CAJJIP010000000 1 rc DNA linear INV 01-FEB-2021 DEFINITION Celastrina argiolus, whole genome shotgun sequencing project. ACCESSION CAJJIP000000000 VERSION CAJJIP000000000.1 DBLINK BioProject: PRJEB41907 BioSample: SAMEA7523268 KEYWORDS WGS. SOURCE Celastrina argiolus (holly blue) ORGANISM Celastrina argiolus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Celastrina. REFERENCE 1 (bases 1 to 1) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (19-JAN-2021) SC, Wellcome Sanger Institute, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Celastrina argiolus whole genome shotgun (WGS) project has the project accession CAJJIP000000000. This version of the project (01) has the accession number CAJJIP010000000, and consists of sequence CAJJIP010000001. The assembly ilCelArgi3.1 is based on 32x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1 /organism="Celastrina argiolus" /mol_type="genomic DNA" /db_xref="taxon:203782" /note="contig: scaffold_36_ctg1" WGS CAJJIP010000001 // LOCUS CADEAO010000000 1272 rc DNA linear INV 25-JAN-2021 DEFINITION Chironomus riparius, whole genome shotgun sequencing project. ACCESSION CADEAO000000000 VERSION CADEAO000000000.1 DBLINK BioProject: PRJEB27753 BioSample: SAMEA4786369 KEYWORDS WGS. SOURCE Chironomus riparius ORGANISM Chironomus riparius Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Chironomoidea; Chironomidae; Chironominae; Chironomus. REFERENCE 1 (bases 1 to 1272) AUTHORS Hankeln,T., Hellmann,S. and Bicker,A. TITLE Direct Submission JOURNAL Submitted (12-MAR-2020) MAINZ, Hankeln Lab, Becherweg 30a, 55128 Mainz, Germany COMMENT The Chironomus riparius whole genome shotgun (WGS) project has the project accession CADEAO000000000. This version of the project (01) has the accession number CADEAO010000000, and consists of sequences CADEAO010000001-CADEAO010001272. Non-biting midges of the genus Chironomus are a model organism to answer questions on the molecular evolution of genes and genome organisation. In ecotoxicology, the aquatic chironomid larvae are used as an indicator for environmental pollution. Here we provide the draft genome of the most commonly studied species, Chironomus riparius (Laufer). FEATURES Location/Qualifiers source 1..1272 /organism="Chironomus riparius" /mol_type="genomic DNA" /db_xref="taxon:315576" WGS CADEAO010000001-CADEAO010001272 WGS_SCAFLD LR782268-LR782534 // LOCUS CACTIS020000000 26649 rc DNA linear VRT 25-JAN-2021 DEFINITION Scyliorhinus canicula, whole genome shotgun sequencing project. ACCESSION CACTIS000000000 VERSION CACTIS000000000.2 DBLINK BioProject: PRJEB35944 BioSample: SAMEA994730 KEYWORDS WGS. SOURCE Scyliorhinus canicula (smaller spotted catshark) ORGANISM Scyliorhinus canicula Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Carcharhiniformes; Scyliorhinidae; Scyliorhinus. REFERENCE 1 (bases 1 to 26649) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (20-DEC-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 26649) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (21-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT On Jan 28, 2021 this sequence version replaced CACTIS000000000.1. The Scyliorhinus canicula whole genome shotgun (WGS) project has the project accession CACTIS000000000. This version of the project (02) has the accession number CACTIS020000000, and consists of sequences CACTIS020000001-CACTIS020026649. The assembly sScyCan1.2 is based on 63x PacBio data, 43x 10X Genomics Chromium data, and BioNano data generated at the Wellcome Sanger Institute, and 17x Hi-C data generated at the Baylor College of Medicine. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with purge_dups, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, Hi-C based scaffolding and improvement by the Aiden lab as part of a collaboration with DNA Zoo using 3D-DNA and Juicebox, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..26649 /organism="Scyliorhinus canicula" /mol_type="genomic DNA" /db_xref="taxon:7830" WGS CACTIS020000001-CACTIS020026649 // LOCUS CAJIMM010000000 24195 rc DNA linear VRT 25-JAN-2021 DEFINITION Bufo bufo, whole genome shotgun sequencing project. ACCESSION CAJIMM000000000 VERSION CAJIMM000000000.1 DBLINK BioProject: PRJEB42169 BioSample: SAMEA7521636 KEYWORDS WGS. SOURCE Bufo bufo (common toad) ORGANISM Bufo bufo Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Neobatrachia; Hyloidea; Bufonidae; Bufo. REFERENCE 1 (bases 1 to 24195) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (18-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Bufo bufo whole genome shotgun (WGS) project has the project accession CAJIMM000000000. This version of the project (01) has the accession number CAJIMM010000000, and consists of sequences CAJIMM010000001-CAJIMM010024195. The assembly aBufBuf1.1 is based on 64x PacBio data, 10X Genomics Chromium data, BioNano data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig separation with purge_dups, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, Hi-C based scaffolding with 3D-DNA, Arrow polishing, and two rounds of FreeBayes polishing. The mitochondrial assembly was produced at The Rockefeller University using mitoVGP. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..24195 /organism="Bufo bufo" /mol_type="genomic DNA" /db_xref="taxon:8384" WGS CAJIMM010000001-CAJIMM010024195 // LOCUS CAJIML010000000 12019 rc DNA linear VRT 25-JAN-2021 DEFINITION Rana temporaria, whole genome shotgun sequencing project. ACCESSION CAJIML000000000 VERSION CAJIML000000000.1 DBLINK BioProject: PRJEB42170 BioSample: SAMEA7521635 KEYWORDS WGS. SOURCE Rana temporaria (common frog) ORGANISM Rana temporaria Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Neobatrachia; Ranoidea; Ranidae; Rana; Rana. REFERENCE 1 (bases 1 to 12019) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (18-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Rana temporaria whole genome shotgun (WGS) project has the project accession CAJIML000000000. This version of the project (01) has the accession number CAJIML010000000, and consists of sequences CAJIML010000001-CAJIML010012019. The assembly aRanTem1.1 is based on 63x PacBio data, 10X Genomics Chromium data, BioNano data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig separation with purge_dups, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. The mitochondrial assembly was produced at The Rockefeller University using mitoVGP. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named using a genetic map provided by Dan Jeffries. FEATURES Location/Qualifiers source 1..12019 /organism="Rana temporaria" /mol_type="genomic DNA" /db_xref="taxon:8407" WGS CAJIML010000001-CAJIML010012019 // LOCUS CAJIMG010000000 1185 rc DNA linear VRT 25-JAN-2021 DEFINITION Trachurus trachurus, whole genome shotgun sequencing project. ACCESSION CAJIMG000000000 VERSION CAJIMG000000000.1 DBLINK BioProject: PRJEB42173 BioSample: SAMEA7524396 KEYWORDS WGS. SOURCE Trachurus trachurus (Atlantic horse mackerel) ORGANISM Trachurus trachurus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Trachurus. REFERENCE 1 (bases 1 to 1185) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (18-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Trachurus trachurus whole genome shotgun (WGS) project has the project accession CAJIMG000000000. This version of the project (01) has the accession number CAJIMG010000000, and consists of sequences CAJIMG010000001-CAJIMG010001185. The assembly fTraTra1.1 is based on 162x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with purge_dups, 10X based scaffolding with scaff10x, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. The mitochondrial assembly was produced at The Rockefeller University using mitoVGP. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds are named by synteny with medaka. FEATURES Location/Qualifiers source 1..1185 /organism="Trachurus trachurus" /mol_type="genomic DNA" /db_xref="taxon:36212" WGS CAJIMG010000001-CAJIMG010001185 // LOCUS CACTIT020000000 614 rc DNA linear VRT 25-JAN-2021 DEFINITION Scyliorhinus canicula, whole genome shotgun sequencing project. ACCESSION CACTIT000000000 VERSION CACTIT000000000.2 DBLINK BioProject: PRJEB35945 BioSample: SAMEA994730 KEYWORDS WGS. SOURCE Scyliorhinus canicula (smaller spotted catshark) ORGANISM Scyliorhinus canicula Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Carcharhiniformes; Scyliorhinidae; Scyliorhinus. REFERENCE 1 (bases 1 to 614) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (20-DEC-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 614) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (21-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT On Jan 28, 2021 this sequence version replaced CACTIT000000000.1. The Scyliorhinus canicula whole genome shotgun (WGS) project has the project accession CACTIT000000000. This version of the project (02) has the accession number CACTIT020000000, and consists of sequences CACTIT020000001-CACTIT020000614. The assembly sScyCan1.2 is based on 63x PacBio data, 43x 10X Genomics Chromium data, and BioNano data generated at the Wellcome Sanger Institute, and 17x Hi-C data generated at the Baylor College of Medicine. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with purge_dups, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, Hi-C based scaffolding and improvement by the Aiden lab as part of a collaboration with DNA Zoo using 3D-DNA and Juicebox, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..614 /organism="Scyliorhinus canicula" /mol_type="genomic DNA" /db_xref="taxon:7830" WGS CACTIT020000001-CACTIT020000614 // LOCUS CAJIMO010000000 541 rc DNA linear VRT 25-JAN-2021 DEFINITION Rana temporaria, whole genome shotgun sequencing project. ACCESSION CAJIMO000000000 VERSION CAJIMO000000000.1 DBLINK BioProject: PRJEB42171 BioSample: SAMEA7521635 KEYWORDS WGS. SOURCE Rana temporaria (common frog) ORGANISM Rana temporaria Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Neobatrachia; Ranoidea; Ranidae; Rana; Rana. REFERENCE 1 (bases 1 to 541) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (21-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Rana temporaria whole genome shotgun (WGS) project has the project accession CAJIMO000000000. This version of the project (01) has the accession number CAJIMO010000000, and consists of sequences CAJIMO010000001-CAJIMO010000541. The assembly aRanTem1.1 is based on 63x PacBio data, 10X Genomics Chromium data, BioNano data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig separation with purge_dups, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. The mitochondrial assembly was produced at The Rockefeller University using mitoVGP. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named using a genetic map provided by Dan Jeffries. FEATURES Location/Qualifiers source 1..541 /organism="Rana temporaria" /mol_type="genomic DNA" /db_xref="taxon:8407" WGS CAJIMO010000001-CAJIMO010000541 // LOCUS CAJIMN010000000 1295 rc DNA linear VRT 25-JAN-2021 DEFINITION Bufo bufo, whole genome shotgun sequencing project. ACCESSION CAJIMN000000000 VERSION CAJIMN000000000.1 DBLINK BioProject: PRJEB42168 BioSample: SAMEA7521636 KEYWORDS WGS. SOURCE Bufo bufo (common toad) ORGANISM Bufo bufo Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Neobatrachia; Hyloidea; Bufonidae; Bufo. REFERENCE 1 (bases 1 to 1295) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (21-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Bufo bufo whole genome shotgun (WGS) project has the project accession CAJIMN000000000. This version of the project (01) has the accession number CAJIMN010000000, and consists of sequences CAJIMN010000001-CAJIMN010001295. The assembly aBufBuf1.1 is based on 64x PacBio data, 10X Genomics Chromium data, BioNano data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig separation with purge_dups, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, Hi-C based scaffolding with 3D-DNA, Arrow polishing, and two rounds of FreeBayes polishing. The mitochondrial assembly was produced at The Rockefeller University using mitoVGP. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..1295 /organism="Bufo bufo" /mol_type="genomic DNA" /db_xref="taxon:8384" WGS CAJIMN010000001-CAJIMN010001295 // LOCUS CAJIMH010000000 194 rc DNA linear VRT 25-JAN-2021 DEFINITION Trachurus trachurus, whole genome shotgun sequencing project. ACCESSION CAJIMH000000000 VERSION CAJIMH000000000.1 DBLINK BioProject: PRJEB42172 BioSample: SAMEA7524396 KEYWORDS WGS. SOURCE Trachurus trachurus (Atlantic horse mackerel) ORGANISM Trachurus trachurus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Trachurus. REFERENCE 1 (bases 1 to 194) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (18-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Trachurus trachurus whole genome shotgun (WGS) project has the project accession CAJIMH000000000. This version of the project (01) has the accession number CAJIMH010000000, and consists of sequences CAJIMH010000001-CAJIMH010000194. The assembly fTraTra1.1 is based on 162x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with purge_dups, 10X based scaffolding with scaff10x, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. The mitochondrial assembly was produced at The Rockefeller University using mitoVGP. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds are named by synteny with medaka. FEATURES Location/Qualifiers source 1..194 /organism="Trachurus trachurus" /mol_type="genomic DNA" /db_xref="taxon:36212" WGS CAJIMH010000001-CAJIMH010000194 // LOCUS CAJHVF010000000 1884 rc DNA linear INV 25-JAN-2021 DEFINITION Mythimna impura, whole genome shotgun sequencing project. ACCESSION CAJHVF000000000 VERSION CAJHVF000000000.1 DBLINK BioProject: PRJEB41925 BioSample: SAMEA7519913 KEYWORDS WGS. SOURCE Mythimna impura ORGANISM Mythimna impura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Hadeninae; Mythimna. REFERENCE 1 (bases 1 to 1884) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (11-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Mythimna impura whole genome shotgun (WGS) project has the project accession CAJHVF000000000. This version of the project (01) has the accession number CAJHVF010000000, and consists of sequences CAJHVF010000001-CAJHVF010001884. The assembly ilMytImpu1.1 is based on 38x PacBio data, 10X Genomics Chromium data, and Qiagen Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..1884 /organism="Mythimna impura" /mol_type="genomic DNA" /db_xref="taxon:987985" WGS CAJHVF010000001-CAJHVF010001884 // LOCUS CAJHZW010000000 2021 rc DNA linear INV 25-JAN-2021 DEFINITION Lymantria monacha, whole genome shotgun sequencing project. ACCESSION CAJHZW000000000 VERSION CAJHZW000000000.1 DBLINK BioProject: PRJEB42030 BioSample: SAMEA7519912 KEYWORDS WGS. SOURCE Lymantria monacha (black-arched tussock moth) ORGANISM Lymantria monacha Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Erebidae; Lymantriinae; Lymantria. REFERENCE 1 (bases 1 to 2021) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (16-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Lymantria monacha whole genome shotgun (WGS) project has the project accession CAJHZW000000000. This version of the project (01) has the accession number CAJHZW010000000, and consists of sequences CAJHZW010000001-CAJHZW010002021. The assembly ilLymMona1.1 is based on 39x PacBio data, 10X Genomics Chromium data, and Qiagen Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..2021 /organism="Lymantria monacha" /mol_type="genomic DNA" /db_xref="taxon:78897" WGS CAJHZW010000001-CAJHZW010002021 // LOCUS CAJHZX010000000 2655 rc DNA linear INV 25-JAN-2021 DEFINITION Cosmia trapezina, whole genome shotgun sequencing project. ACCESSION CAJHZX000000000 VERSION CAJHZX000000000.1 DBLINK BioProject: PRJEB42027 BioSample: SAMEA7519851 KEYWORDS WGS. SOURCE Cosmia trapezina (dun-bar pinion) ORGANISM Cosmia trapezina Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Ipimorphinae; Cosmia. REFERENCE 1 (bases 1 to 2655) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (16-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Cosmia trapezina whole genome shotgun (WGS) project has the project accession CAJHZX000000000. This version of the project (01) has the accession number CAJHZX010000000, and consists of sequences CAJHZX010000001-CAJHZX010002655. The assembly ilCosTrap1.1 is based on 43x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..2655 /organism="Cosmia trapezina" /mol_type="genomic DNA" /db_xref="taxon:116126" WGS CAJHZX010000001-CAJHZX010002655 // LOCUS CAJHZV010000000 2083 rc DNA linear INV 25-JAN-2021 DEFINITION Notocelia uddmanniana, whole genome shotgun sequencing project. ACCESSION CAJHZV000000000 VERSION CAJHZV000000000.1 DBLINK BioProject: PRJEB42036 BioSample: SAMEA7519916 KEYWORDS WGS. SOURCE Notocelia uddmanniana ORGANISM Notocelia uddmanniana Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Tortricoidea; Tortricidae; Olethreutinae; Eucosmini; Notocelia. REFERENCE 1 (bases 1 to 2083) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (16-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Notocelia uddmanniana whole genome shotgun (WGS) project has the project accession CAJHZV000000000. This version of the project (01) has the accession number CAJHZV010000000, and consists of sequences CAJHZV010000001-CAJHZV010002083. The assembly ilNotUddm1.1 is based on 18x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..2083 /organism="Notocelia uddmanniana" /mol_type="genomic DNA" /db_xref="taxon:1594315" WGS CAJHZV010000001-CAJHZV010002083 // LOCUS CAJHUU010000000 1442 rc DNA linear INV 25-JAN-2021 DEFINITION Apotomis turbidana, whole genome shotgun sequencing project. ACCESSION CAJHUU000000000 VERSION CAJHUU000000000.1 DBLINK BioProject: PRJEB41898 BioSample: SAMEA7520681 KEYWORDS WGS. SOURCE Apotomis turbidana ORGANISM Apotomis turbidana Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Tortricoidea; Tortricidae; Olethreutinae; Olethreutini; Apotomis. REFERENCE 1 (bases 1 to 1442) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (11-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Apotomis turbidana whole genome shotgun (WGS) project has the project accession CAJHUU000000000. This version of the project (01) has the accession number CAJHUU010000000, and consists of sequences CAJHUU010000001-CAJHUU010001442. The assembly ilApoTurb1.1 is based on 32x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..1442 /organism="Apotomis turbidana" /mol_type="genomic DNA" /db_xref="taxon:1100916" WGS CAJHUU010000001-CAJHUU010001442 // LOCUS CAJHVE010000000 499 rc DNA linear INV 25-JAN-2021 DEFINITION Hypena proboscidalis, whole genome shotgun sequencing project. ACCESSION CAJHVE000000000 VERSION CAJHVE000000000.1 DBLINK BioProject: PRJEB41921 BioSample: SAMEA7520188 KEYWORDS WGS. SOURCE Hypena proboscidalis ORGANISM Hypena proboscidalis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Erebidae; Hypeninae; Hypena. REFERENCE 1 (bases 1 to 499) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (11-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Hypena proboscidalis whole genome shotgun (WGS) project has the project accession CAJHVE000000000. This version of the project (01) has the accession number CAJHVE010000000, and consists of sequences CAJHVE010000001-CAJHVE010000499. The assembly ilHypProb1.1 is based on 23x PacBio data, 10X Genomics Chromium data, and Qiagen Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..499 /organism="Hypena proboscidalis" /mol_type="genomic DNA" /db_xref="taxon:753189" WGS CAJHVE010000001-CAJHVE010000499 // LOCUS CAJHUO010000000 433 rc DNA linear INV 25-JAN-2021 DEFINITION Blastobasis lacticolella, whole genome shotgun sequencing project. ACCESSION CAJHUO000000000 VERSION CAJHUO000000000.1 DBLINK BioProject: PRJEB41905 BioSample: SAMEA7519826 KEYWORDS WGS. SOURCE Blastobasis lacticolella ORGANISM Blastobasis lacticolella Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Blastobasidae; Blastobasis. REFERENCE 1 (bases 1 to 433) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (11-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Blastobasis lacticolella whole genome shotgun (WGS) project has the project accession CAJHUO000000000. This version of the project (01) has the accession number CAJHUO010000000, and consists of sequences CAJHUO010000001-CAJHUO010000433. The assembly ilBlaLact1.1 is based on 32x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..433 /organism="Blastobasis lacticolella" /mol_type="genomic DNA" /db_xref="taxon:2561016" WGS CAJHUO010000001-CAJHUO010000433 // LOCUS CAJHZU010000000 1263 rc DNA linear INV 25-JAN-2021 DEFINITION Noctua fimbriata, whole genome shotgun sequencing project. ACCESSION CAJHZU000000000 VERSION CAJHZU000000000.1 DBLINK BioProject: PRJEB42034 BioSample: SAMEA7519914 KEYWORDS WGS. SOURCE Noctua fimbriata ORGANISM Noctua fimbriata Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Noctuinae; Noctuini; Noctua. REFERENCE 1 (bases 1 to 1263) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (16-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Noctua fimbriata whole genome shotgun (WGS) project has the project accession CAJHZU000000000. This version of the project (01) has the accession number CAJHZU010000000, and consists of sequences CAJHZU010000001-CAJHZU010001263. The assembly ilNocFimb1.1 is based on 20x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..1263 /organism="Noctua fimbriata" /mol_type="genomic DNA" /db_xref="taxon:753202" WGS CAJHZU010000001-CAJHZU010001263 // LOCUS CAJHWZ010000000 172 rc DNA linear INV 25-JAN-2021 DEFINITION Phlogophora meticulosa, whole genome shotgun sequencing project. ACCESSION CAJHWZ000000000 VERSION CAJHWZ000000000.1 DBLINK BioProject: PRJEB41950 BioSample: SAMEA7520192 KEYWORDS WGS. SOURCE Phlogophora meticulosa ORGANISM Phlogophora meticulosa Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Hadeninae; Phlogophora. REFERENCE 1 (bases 1 to 172) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (14-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Phlogophora meticulosa whole genome shotgun (WGS) project has the project accession CAJHWZ000000000. This version of the project (01) has the accession number CAJHWZ010000000, and consists of sequences CAJHWZ010000001-CAJHWZ010000172. The assembly ilPhlMeti2.1 is based on 45x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..172 /organism="Phlogophora meticulosa" /mol_type="genomic DNA" /db_xref="taxon:875884" WGS CAJHWZ010000001-CAJHWZ010000172 // LOCUS CAJHUX010000000 333 rc DNA linear INV 25-JAN-2021 DEFINITION Euproctis similis, whole genome shotgun sequencing project. ACCESSION CAJHUX000000000 VERSION CAJHUX000000000.1 DBLINK BioProject: PRJEB41917 BioSample: SAMEA7519909 KEYWORDS WGS. SOURCE Euproctis similis ORGANISM Euproctis similis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Erebidae; Lymantriinae; Euproctis. REFERENCE 1 (bases 1 to 333) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (11-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Euproctis similis whole genome shotgun (WGS) project has the project accession CAJHUX000000000. This version of the project (01) has the accession number CAJHUX010000000, and consists of sequences CAJHUX010000001-CAJHUX010000333. The assembly ilEupSimi1.1 is based on 70x PacBio data, 10X Genomics Chromium data, and Qiagen Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..333 /organism="Euproctis similis" /mol_type="genomic DNA" /db_xref="taxon:987935" WGS CAJHUX010000001-CAJHUX010000333 // LOCUS CAJHUT010000000 912 rc DNA linear INV 25-JAN-2021 DEFINITION Celastrina argiolus, whole genome shotgun sequencing project. ACCESSION CAJHUT000000000 VERSION CAJHUT000000000.1 DBLINK BioProject: PRJEB41906 BioSample: SAMEA7523268 KEYWORDS WGS. SOURCE Celastrina argiolus (holly blue) ORGANISM Celastrina argiolus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Celastrina. REFERENCE 1 (bases 1 to 912) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (11-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Celastrina argiolus whole genome shotgun (WGS) project has the project accession CAJHUT000000000. This version of the project (01) has the accession number CAJHUT010000000, and consists of sequences CAJHUT010000001-CAJHUT010000912. The assembly ilCelArgi3.1 is based on 32x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..912 /organism="Celastrina argiolus" /mol_type="genomic DNA" /db_xref="taxon:203782" WGS CAJHUT010000001-CAJHUT010000912 // LOCUS CAJHZJ010000000 1694 rc DNA linear INV 25-JAN-2021 DEFINITION Endotricha flammealis, whole genome shotgun sequencing project. ACCESSION CAJHZJ000000000 VERSION CAJHZJ000000000.1 DBLINK BioProject: PRJEB42004 BioSample: SAMEA7519855 KEYWORDS WGS. SOURCE Endotricha flammealis ORGANISM Endotricha flammealis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pyraloidea; Pyralidae; Pyralinae; Endotricha. REFERENCE 1 (bases 1 to 1694) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (15-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Endotricha flammealis whole genome shotgun (WGS) project has the project accession CAJHZJ000000000. This version of the project (01) has the accession number CAJHZJ010000000, and consists of sequences CAJHZJ010000001-CAJHZJ010001694. The assembly ilEndFlam1.1 is based on 19x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..1694 /organism="Endotricha flammealis" /mol_type="genomic DNA" /db_xref="taxon:1101095" WGS CAJHZJ010000001-CAJHZJ010001694 // LOCUS CAJHUL010000000 1213 rc DNA linear INV 25-JAN-2021 DEFINITION Laspeyria flexula, whole genome shotgun sequencing project. ACCESSION CAJHUL000000000 VERSION CAJHUL000000000.1 DBLINK BioProject: PRJEB41885 BioSample: SAMEA7519836 KEYWORDS WGS. SOURCE Laspeyria flexula ORGANISM Laspeyria flexula Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Erebidae; Erebinae; Laspeyria. REFERENCE 1 (bases 1 to 1213) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (11-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Laspeyria flexula whole genome shotgun (WGS) project has the project accession CAJHUL000000000. This version of the project (01) has the accession number CAJHUL010000000, and consists of sequences CAJHUL010000001-CAJHUL010001213. The assembly ilLasFlex1.1 is based on 48x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..1213 /organism="Laspeyria flexula" /mol_type="genomic DNA" /db_xref="taxon:938238" WGS CAJHUL010000001-CAJHUL010001213 // LOCUS CAJHUY010000000 434 rc DNA linear INV 25-JAN-2021 DEFINITION Cyaniris semiargus, whole genome shotgun sequencing project. ACCESSION CAJHUY000000000 VERSION CAJHUY000000000.1 DBLINK BioProject: PRJEB41909 BioSample: SAMEA7523311 KEYWORDS WGS. SOURCE Cyaniris semiargus ORGANISM Cyaniris semiargus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Cyaniris. REFERENCE 1 (bases 1 to 434) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (11-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Cyaniris semiargus whole genome shotgun (WGS) project has the project accession CAJHUY000000000. This version of the project (01) has the accession number CAJHUY010000000, and consists of sequences CAJHUY010000001-CAJHUY010000434. The assembly ilCyaSemi1.1 is based on 42x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..434 /organism="Cyaniris semiargus" /mol_type="genomic DNA" /db_xref="taxon:988025" WGS CAJHUY010000001-CAJHUY010000434 // LOCUS CAJHZM010000000 401 rc DNA linear INV 25-JAN-2021 DEFINITION Pararge aegeria, whole genome shotgun sequencing project. ACCESSION CAJHZM000000000 VERSION CAJHZM000000000.1 DBLINK BioProject: PRJEB42038 BioSample: SAMEA7532732 KEYWORDS WGS. SOURCE Pararge aegeria (specked wood butterfly) ORGANISM Pararge aegeria Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Satyrinae; Satyrini; Parargina; Pararge. REFERENCE 1 (bases 1 to 401) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (16-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Pararge aegeria whole genome shotgun (WGS) project has the project accession CAJHZM000000000. This version of the project (01) has the accession number CAJHZM010000000, and consists of sequences CAJHZM010000001-CAJHZM010000401. The assembly ilParAegt1.1 is based on 42x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..401 /organism="Pararge aegeria" /mol_type="genomic DNA" /db_xref="taxon:116150" WGS CAJHZM010000001-CAJHZM010000401 // LOCUS CAJHUN010000000 248 rc DNA linear INV 25-JAN-2021 DEFINITION Aricia agestis, whole genome shotgun sequencing project. ACCESSION CAJHUN000000000 VERSION CAJHUN000000000.1 DBLINK BioProject: PRJEB41900 BioSample: SAMEA7523300 KEYWORDS WGS. SOURCE Aricia agestis (brown argus) ORGANISM Aricia agestis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Aricia. REFERENCE 1 (bases 1 to 248) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (11-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Aricia agestis whole genome shotgun (WGS) project has the project accession CAJHUN000000000. This version of the project (01) has the accession number CAJHUN010000000, and consists of sequences CAJHUN010000001-CAJHUN010000248. The assembly ilAriAges1.1 is based on 54x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..248 /organism="Aricia agestis" /mol_type="genomic DNA" /db_xref="taxon:91739" WGS CAJHUN010000001-CAJHUN010000248 // LOCUS CAJHZO010000000 1204 rc DNA linear INV 25-JAN-2021 DEFINITION Craniophora ligustri, whole genome shotgun sequencing project. ACCESSION CAJHZO000000000 VERSION CAJHZO000000000.1 DBLINK BioProject: PRJEB42028 BioSample: SAMEA7519852 KEYWORDS WGS. SOURCE Craniophora ligustri ORGANISM Craniophora ligustri Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Acronictinae; Craniophora. REFERENCE 1 (bases 1 to 1204) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (16-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Craniophora ligustri whole genome shotgun (WGS) project has the project accession CAJHZO000000000. This version of the project (01) has the accession number CAJHZO010000000, and consists of sequences CAJHZO010000001-CAJHZO010001204. The assembly ilCraLigu1.1 is based on 21x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..1204 /organism="Craniophora ligustri" /mol_type="genomic DNA" /db_xref="taxon:938226" WGS CAJHZO010000001-CAJHZO010001204 // LOCUS CAJHVC010000000 426 rc DNA linear INV 25-JAN-2021 DEFINITION Limenitis camilla, whole genome shotgun sequencing project. ACCESSION CAJHVC000000000 VERSION CAJHVC000000000.1 DBLINK BioProject: PRJEB41922 BioSample: SAMEA7523310 KEYWORDS WGS. SOURCE Limenitis camilla ORGANISM Limenitis camilla Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Limenitidinae; Limenitidini; Limenitis. REFERENCE 1 (bases 1 to 426) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (11-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Limenitis camilla whole genome shotgun (WGS) project has the project accession CAJHVC000000000. This version of the project (01) has the accession number CAJHVC010000000, and consists of sequences CAJHVC010000001-CAJHVC010000426. The assembly ilLimCami1.1 is based on 60x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..426 /organism="Limenitis camilla" /mol_type="genomic DNA" /db_xref="taxon:270466" WGS CAJHVC010000001-CAJHVC010000426 // LOCUS CAJHUH010000000 40 rc DNA linear INV 25-JAN-2021 DEFINITION Nymphalis urticae, whole genome shotgun sequencing project. ACCESSION CAJHUH000000000 VERSION CAJHUH000000000.1 DBLINK BioProject: PRJEB41895 BioSample: SAMEA7523286 KEYWORDS WGS. SOURCE Nymphalis urticae (small tortoiseshell) ORGANISM Nymphalis urticae Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Nymphalinae; Nymphalis; Aglais. REFERENCE 1 (bases 1 to 40) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (11-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Nymphalis urticae whole genome shotgun (WGS) project has the project accession CAJHUH000000000. This version of the project (01) has the accession number CAJHUH010000000, and consists of sequences CAJHUH010000001-CAJHUH010000040. The assembly ilAglUrti1.1 is based on 58x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..40 /organism="Nymphalis urticae" /mol_type="genomic DNA" /db_xref="taxon:111881" WGS CAJHUH010000001-CAJHUH010000040 // LOCUS CAJHUM010000000 200 rc DNA linear INV 25-JAN-2021 DEFINITION Nymphalis io, whole genome shotgun sequencing project. ACCESSION CAJHUM000000000 VERSION CAJHUM000000000.1 DBLINK BioProject: PRJEB41893 BioSample: SAMEA7523149 KEYWORDS WGS. SOURCE Nymphalis io (European peacock) ORGANISM Nymphalis io Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Nymphalinae; Nymphalis; Aglais. REFERENCE 1 (bases 1 to 200) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (11-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Nymphalis io whole genome shotgun (WGS) project has the project accession CAJHUM000000000. This version of the project (01) has the accession number CAJHUM010000000, and consists of sequences CAJHUM010000001-CAJHUM010000200. The assembly ilAglIoxx1.1 is based on 64x PacBio data, 10X Genomics Chromium data, and Qiagen Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..200 /organism="Nymphalis io" /mol_type="genomic DNA" /db_xref="taxon:171585" WGS CAJHUM010000001-CAJHUM010000200 // LOCUS CAJHXE010000000 308 rc DNA linear INV 25-JAN-2021 DEFINITION Notodonta dromedarius, whole genome shotgun sequencing project. ACCESSION CAJHXE000000000 VERSION CAJHXE000000000.1 DBLINK BioProject: PRJEB41963 BioSample: SAMEA7520190 KEYWORDS WGS. SOURCE Notodonta dromedarius ORGANISM Notodonta dromedarius Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Notodontidae; Notodontinae; Notodonta. REFERENCE 1 (bases 1 to 308) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (14-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Notodonta dromedarius whole genome shotgun (WGS) project has the project accession CAJHXE000000000. This version of the project (01) has the accession number CAJHXE010000000, and consists of sequences CAJHXE010000001-CAJHXE010000308. The assembly ilNotDrom1.1 is based on 77x PacBio data, 10X Genomics Chromium data, and ilNotDrom1 Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..308 /organism="Notodonta dromedarius" /mol_type="genomic DNA" /db_xref="taxon:753204" WGS CAJHXE010000001-CAJHXE010000308 // LOCUS CAJHUA010000000 183 rc DNA linear INV 25-JAN-2021 DEFINITION Autographa gamma, whole genome shotgun sequencing project. ACCESSION CAJHUA000000000 VERSION CAJHUA000000000.1 DBLINK BioProject: PRJEB41839 BioSample: SAMEA7519848 KEYWORDS WGS. SOURCE Autographa gamma (silver Y moth) ORGANISM Autographa gamma Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Autographa. REFERENCE 1 (bases 1 to 183) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (10-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Autographa gamma whole genome shotgun (WGS) project has the project accession CAJHUA000000000. This version of the project (01) has the accession number CAJHUA010000000, and consists of sequences CAJHUA010000001-CAJHUA010000183. The assembly ilAutGamm1.1 is based on 36x PacBio data, 10X Genomics Chromium data, and Qiagen Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..183 /organism="Autographa gamma" /mol_type="genomic DNA" /db_xref="taxon:254363" WGS CAJHUA010000001-CAJHUA010000183 // LOCUS CAJHUW010000000 231 rc DNA linear INV 25-JAN-2021 DEFINITION Erynnis tages, whole genome shotgun sequencing project. ACCESSION CAJHUW000000000 VERSION CAJHUW000000000.1 DBLINK BioProject: PRJEB41913 BioSample: SAMEA7523299 KEYWORDS WGS. SOURCE Erynnis tages ORGANISM Erynnis tages Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Hesperioidea; Hesperiidae; Pyrginae; Erynnis. REFERENCE 1 (bases 1 to 231) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (11-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Erynnis tages whole genome shotgun (WGS) project has the project accession CAJHUW000000000. This version of the project (01) has the accession number CAJHUW010000000, and consists of sequences CAJHUW010000001-CAJHUW010000231. The assembly ilEryTage1.1 is based on 29x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..231 /organism="Erynnis tages" /mol_type="genomic DNA" /db_xref="taxon:520884" WGS CAJHUW010000001-CAJHUW010000231 // LOCUS CAJHUJ010000000 667 rc DNA linear INV 25-JAN-2021 DEFINITION Scaeva pyrastri, whole genome shotgun sequencing project. ACCESSION CAJHUJ000000000 VERSION CAJHUJ000000000.1 DBLINK BioProject: PRJEB41881 BioSample: SAMEA7520160 KEYWORDS WGS. SOURCE Scaeva pyrastri ORGANISM Scaeva pyrastri Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Syrphoidea; Syrphidae; Syrphinae; Syrphini; Scaeva. REFERENCE 1 (bases 1 to 667) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (11-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Scaeva pyrastri whole genome shotgun (WGS) project has the project accession CAJHUJ000000000. This version of the project (01) has the accession number CAJHUJ010000000, and consists of sequences CAJHUJ010000001-CAJHUJ010000667. The assembly idScaPyra1.1 is based on 119x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..667 /organism="Scaeva pyrastri" /mol_type="genomic DNA" /db_xref="taxon:219539" WGS CAJHUJ010000001-CAJHUJ010000667 // LOCUS CAJHUG010000000 158 rc DNA linear INV 25-JAN-2021 DEFINITION Syritta pipiens, whole genome shotgun sequencing project. ACCESSION CAJHUG000000000 VERSION CAJHUG000000000.1 DBLINK BioProject: PRJEB41891 BioSample: SAMEA7520166 KEYWORDS WGS. SOURCE Syritta pipiens ORGANISM Syritta pipiens Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Syrphoidea; Syrphidae; Eristalinae; Xylotini; Syritta. REFERENCE 1 (bases 1 to 158) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (11-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Syritta pipiens whole genome shotgun (WGS) project has the project accession CAJHUG000000000. This version of the project (01) has the accession number CAJHUG010000000, and consists of sequences CAJHUG010000001-CAJHUG010000158. The assembly idSyrPipi1.1 is based on 44x PacBio data, 10X Genomics Chromium data, and Qiagen Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..158 /organism="Syritta pipiens" /mol_type="genomic DNA" /db_xref="taxon:34682" WGS CAJHUG010000001-CAJHUG010000158 // LOCUS CAJHWS010000000 240 rc DNA linear INV 25-JAN-2021 DEFINITION Thyatira batis, whole genome shotgun sequencing project. ACCESSION CAJHWS000000000 VERSION CAJHWS000000000.1 DBLINK BioProject: PRJEB41954 BioSample: SAMEA7519923 KEYWORDS WGS. SOURCE Thyatira batis ORGANISM Thyatira batis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Drepanoidea; Drepanidae; Thyatirinae; Thyatira. REFERENCE 1 (bases 1 to 240) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (14-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Thyatira batis whole genome shotgun (WGS) project has the project accession CAJHWS000000000. This version of the project (01) has the accession number CAJHWS010000000, and consists of sequences CAJHWS010000001-CAJHWS010000240. The assembly ilThyBati1.1 is based on 29x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..240 /organism="Thyatira batis" /mol_type="genomic DNA" /db_xref="taxon:721163" WGS CAJHWS010000001-CAJHWS010000240 // LOCUS CAJHUE010000000 442 rc DNA linear INV 25-JAN-2021 DEFINITION Pieris brassicae, whole genome shotgun sequencing project. ACCESSION CAJHUE000000000 VERSION CAJHUE000000000.1 DBLINK BioProject: PRJEB41888 BioSample: SAMEA7532735 KEYWORDS WGS. SOURCE Pieris brassicae (large cabbage white) ORGANISM Pieris brassicae Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Pieridae; Pierinae; Pieris. REFERENCE 1 (bases 1 to 442) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (11-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Pieris brassicae whole genome shotgun (WGS) project has the project accession CAJHUE000000000. This version of the project (01) has the accession number CAJHUE010000000, and consists of sequences CAJHUE010000001-CAJHUE010000442. The assembly ilPieBrab1.1 is based on 92x PacBio data, 10X Genomics Chromium data, and Qiagen Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..442 /organism="Pieris brassicae" /mol_type="genomic DNA" /db_xref="taxon:7116" WGS CAJHUE010000001-CAJHUE010000442 // LOCUS CAJHVB010000000 785 rc DNA linear INV 25-JAN-2021 DEFINITION Hylaea fasciaria, whole genome shotgun sequencing project. ACCESSION CAJHVB000000000 VERSION CAJHVB000000000.1 DBLINK BioProject: PRJEB41919 BioSample: SAMEA7520684 KEYWORDS WGS. SOURCE Hylaea fasciaria ORGANISM Hylaea fasciaria Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Ennominae; Hylaea. REFERENCE 1 (bases 1 to 785) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (11-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Hylaea fasciaria whole genome shotgun (WGS) project has the project accession CAJHVB000000000. This version of the project (01) has the accession number CAJHVB010000000, and consists of sequences CAJHVB010000001-CAJHVB010000785. The assembly ilHylFasc1.1 is based on 72x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..785 /organism="Hylaea fasciaria" /mol_type="genomic DNA" /db_xref="taxon:722673" WGS CAJHVB010000001-CAJHVB010000785 // LOCUS CAJHWT010000000 59 rc DNA linear INV 25-JAN-2021 DEFINITION Pieris rapae, whole genome shotgun sequencing project. ACCESSION CAJHWT000000000 VERSION CAJHWT000000000.1 DBLINK BioProject: PRJEB41951 BioSample: SAMEA7523164 KEYWORDS WGS. SOURCE Pieris rapae (cabbage white) ORGANISM Pieris rapae Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Pieridae; Pierinae; Pieris. REFERENCE 1 (bases 1 to 59) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (14-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Pieris rapae whole genome shotgun (WGS) project has the project accession CAJHWT000000000. This version of the project (01) has the accession number CAJHWT010000000, and consists of sequences CAJHWT010000001-CAJHWT010000059. The assembly ilPieRapa1.1 is based on 56x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..59 /organism="Pieris rapae" /mol_type="genomic DNA" /db_xref="taxon:64459" WGS CAJHWT010000001-CAJHWT010000059 // LOCUS CAJHVM010000000 60 rc DNA linear INV 25-JAN-2021 DEFINITION Mythimna impura, whole genome shotgun sequencing project. ACCESSION CAJHVM000000000 VERSION CAJHVM000000000.1 DBLINK BioProject: PRJEB41924 BioSample: SAMEA7519913 KEYWORDS WGS. SOURCE Mythimna impura ORGANISM Mythimna impura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Hadeninae; Mythimna. REFERENCE 1 (bases 1 to 60) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (11-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Mythimna impura whole genome shotgun (WGS) project has the project accession CAJHVM000000000. This version of the project (01) has the accession number CAJHVM010000000, and consists of sequences CAJHVM010000001-CAJHVM010000060. The assembly ilMytImpu1.1 is based on 38x PacBio data, 10X Genomics Chromium data, and Qiagen Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..60 /organism="Mythimna impura" /mol_type="genomic DNA" /db_xref="taxon:987985" WGS CAJHVM010000001-CAJHVM010000060 // LOCUS CAJHWW010000000 15 rc DNA linear INV 25-JAN-2021 DEFINITION Phlogophora meticulosa, whole genome shotgun sequencing project. ACCESSION CAJHWW000000000 VERSION CAJHWW000000000.1 DBLINK BioProject: PRJEB41949 BioSample: SAMEA7520192 KEYWORDS WGS. SOURCE Phlogophora meticulosa ORGANISM Phlogophora meticulosa Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Hadeninae; Phlogophora. REFERENCE 1 (bases 1 to 15) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (14-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Phlogophora meticulosa whole genome shotgun (WGS) project has the project accession CAJHWW000000000. This version of the project (01) has the accession number CAJHWW010000000, and consists of sequences CAJHWW010000001-CAJHWW010000015. The assembly ilPhlMeti2.1 is based on 45x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..15 /organism="Phlogophora meticulosa" /mol_type="genomic DNA" /db_xref="taxon:875884" WGS CAJHWW010000001-CAJHWW010000015 // LOCUS CAJHZL010000000 292 rc DNA linear INV 25-JAN-2021 DEFINITION Mamestra brassicae, whole genome shotgun sequencing project. ACCESSION CAJHZL000000000 VERSION CAJHZL000000000.1 DBLINK BioProject: PRJEB42033 BioSample: SAMEA7524129 KEYWORDS WGS. SOURCE Mamestra brassicae (cabbage moth) ORGANISM Mamestra brassicae Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Hadeninae; Mamestra. REFERENCE 1 (bases 1 to 292) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (16-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Mamestra brassicae whole genome shotgun (WGS) project has the project accession CAJHZL000000000. This version of the project (01) has the accession number CAJHZL010000000, and consists of sequences CAJHZL010000001-CAJHZL010000292. The assembly ilMamBras1.1 is based on 35x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..292 /organism="Mamestra brassicae" /mol_type="genomic DNA" /db_xref="taxon:55057" WGS CAJHZL010000001-CAJHZL010000292 // LOCUS CAJHUD010000000 70 rc DNA linear INV 25-JAN-2021 DEFINITION Autographa gamma, whole genome shotgun sequencing project. ACCESSION CAJHUD000000000 VERSION CAJHUD000000000.1 DBLINK BioProject: PRJEB41840 BioSample: SAMEA7519848 KEYWORDS WGS. SOURCE Autographa gamma (silver Y moth) ORGANISM Autographa gamma Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Autographa. REFERENCE 1 (bases 1 to 70) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (11-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Autographa gamma whole genome shotgun (WGS) project has the project accession CAJHUD000000000. This version of the project (01) has the accession number CAJHUD010000000, and consists of sequences CAJHUD010000001-CAJHUD010000070. The assembly ilAutGamm1.1 is based on 36x PacBio data, 10X Genomics Chromium data, and Qiagen Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..70 /organism="Autographa gamma" /mol_type="genomic DNA" /db_xref="taxon:254363" WGS CAJHUD010000001-CAJHUD010000070 // LOCUS CAJHVD010000000 24 rc DNA linear INV 25-JAN-2021 DEFINITION Hypena proboscidalis, whole genome shotgun sequencing project. ACCESSION CAJHVD000000000 VERSION CAJHVD000000000.1 DBLINK BioProject: PRJEB41920 BioSample: SAMEA7520188 KEYWORDS WGS. SOURCE Hypena proboscidalis ORGANISM Hypena proboscidalis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Erebidae; Hypeninae; Hypena. REFERENCE 1 (bases 1 to 24) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (11-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Hypena proboscidalis whole genome shotgun (WGS) project has the project accession CAJHVD000000000. This version of the project (01) has the accession number CAJHVD010000000, and consists of sequences CAJHVD010000001-CAJHVD010000024. The assembly ilHypProb1.1 is based on 23x PacBio data, 10X Genomics Chromium data, and Qiagen Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..24 /organism="Hypena proboscidalis" /mol_type="genomic DNA" /db_xref="taxon:753189" WGS CAJHVD010000001-CAJHVD010000024 // LOCUS CAJHUI010000000 385 rc DNA linear INV 25-JAN-2021 DEFINITION Pieris brassicae, whole genome shotgun sequencing project. ACCESSION CAJHUI000000000 VERSION CAJHUI000000000.1 DBLINK BioProject: PRJEB41887 BioSample: SAMEA7532735 KEYWORDS WGS. SOURCE Pieris brassicae (large cabbage white) ORGANISM Pieris brassicae Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Pieridae; Pierinae; Pieris. REFERENCE 1 (bases 1 to 385) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (11-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Pieris brassicae whole genome shotgun (WGS) project has the project accession CAJHUI000000000. This version of the project (01) has the accession number CAJHUI010000000, and consists of sequences CAJHUI010000001-CAJHUI010000385. The assembly ilPieBrab1.1 is based on 92x PacBio data, 10X Genomics Chromium data, and Qiagen Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..385 /organism="Pieris brassicae" /mol_type="genomic DNA" /db_xref="taxon:7116" WGS CAJHUI010000001-CAJHUI010000385 // LOCUS CAJHZP010000000 19 rc DNA linear INV 25-JAN-2021 DEFINITION Noctua fimbriata, whole genome shotgun sequencing project. ACCESSION CAJHZP000000000 VERSION CAJHZP000000000.1 DBLINK BioProject: PRJEB42035 BioSample: SAMEA7519914 KEYWORDS WGS. SOURCE Noctua fimbriata ORGANISM Noctua fimbriata Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Noctuinae; Noctuini; Noctua. REFERENCE 1 (bases 1 to 19) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (16-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Noctua fimbriata whole genome shotgun (WGS) project has the project accession CAJHZP000000000. This version of the project (01) has the accession number CAJHZP010000000, and consists of sequences CAJHZP010000001-CAJHZP010000019. The assembly ilNocFimb1.1 is based on 20x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..19 /organism="Noctua fimbriata" /mol_type="genomic DNA" /db_xref="taxon:753202" WGS CAJHZP010000001-CAJHZP010000019 // LOCUS CAJHZN010000000 41 rc DNA linear INV 25-JAN-2021 DEFINITION Pararge aegeria, whole genome shotgun sequencing project. ACCESSION CAJHZN000000000 VERSION CAJHZN000000000.1 DBLINK BioProject: PRJEB42039 BioSample: SAMEA7532732 KEYWORDS WGS. SOURCE Pararge aegeria (specked wood butterfly) ORGANISM Pararge aegeria Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Satyrinae; Satyrini; Parargina; Pararge. REFERENCE 1 (bases 1 to 41) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (16-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Pararge aegeria whole genome shotgun (WGS) project has the project accession CAJHZN000000000. This version of the project (01) has the accession number CAJHZN010000000, and consists of sequences CAJHZN010000001-CAJHZN010000041. The assembly ilParAegt1.1 is based on 42x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..41 /organism="Pararge aegeria" /mol_type="genomic DNA" /db_xref="taxon:116150" WGS CAJHZN010000001-CAJHZN010000041 // LOCUS CAJHVI010000000 42 rc DNA linear INV 25-JAN-2021 DEFINITION Limenitis camilla, whole genome shotgun sequencing project. ACCESSION CAJHVI000000000 VERSION CAJHVI000000000.1 DBLINK BioProject: PRJEB41923 BioSample: SAMEA7523310 KEYWORDS WGS. SOURCE Limenitis camilla ORGANISM Limenitis camilla Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Limenitidinae; Limenitidini; Limenitis. REFERENCE 1 (bases 1 to 42) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (11-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Limenitis camilla whole genome shotgun (WGS) project has the project accession CAJHVI000000000. This version of the project (01) has the accession number CAJHVI010000000, and consists of sequences CAJHVI010000001-CAJHVI010000042. The assembly ilLimCami1.1 is based on 60x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..42 /organism="Limenitis camilla" /mol_type="genomic DNA" /db_xref="taxon:270466" WGS CAJHVI010000001-CAJHVI010000042 // LOCUS CAJHVK010000000 15 rc DNA linear INV 25-JAN-2021 DEFINITION Apotomis turbidana, whole genome shotgun sequencing project. ACCESSION CAJHVK000000000 VERSION CAJHVK000000000.1 DBLINK BioProject: PRJEB41899 BioSample: SAMEA7520681 KEYWORDS WGS. SOURCE Apotomis turbidana ORGANISM Apotomis turbidana Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Tortricoidea; Tortricidae; Olethreutinae; Olethreutini; Apotomis. REFERENCE 1 (bases 1 to 15) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (11-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Apotomis turbidana whole genome shotgun (WGS) project has the project accession CAJHVK000000000. This version of the project (01) has the accession number CAJHVK010000000, and consists of sequences CAJHVK010000001-CAJHVK010000015. The assembly ilApoTurb1.1 is based on 32x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..15 /organism="Apotomis turbidana" /mol_type="genomic DNA" /db_xref="taxon:1100916" WGS CAJHVK010000001-CAJHVK010000015 // LOCUS CAJHVG010000000 114 rc DNA linear INV 25-JAN-2021 DEFINITION Notodonta dromedarius, whole genome shotgun sequencing project. ACCESSION CAJHVG000000000 VERSION CAJHVG000000000.1 DBLINK BioProject: PRJEB41926 BioSample: SAMEA7520190 KEYWORDS WGS. SOURCE Notodonta dromedarius ORGANISM Notodonta dromedarius Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Notodontidae; Notodontinae; Notodonta. REFERENCE 1 (bases 1 to 114) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (11-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Notodonta dromedarius whole genome shotgun (WGS) project has the project accession CAJHVG000000000. This version of the project (01) has the accession number CAJHVG010000000, and consists of sequences CAJHVG010000001-CAJHVG010000114. The assembly ilNotDrom1.1 is based on 77x PacBio data, 10X Genomics Chromium data, and ilNotDrom1 Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..114 /organism="Notodonta dromedarius" /mol_type="genomic DNA" /db_xref="taxon:753204" WGS CAJHVG010000001-CAJHVG010000114 // LOCUS CAJHZS010000000 20 rc DNA linear INV 25-JAN-2021 DEFINITION Notocelia uddmanniana, whole genome shotgun sequencing project. ACCESSION CAJHZS000000000 VERSION CAJHZS000000000.1 DBLINK BioProject: PRJEB42037 BioSample: SAMEA7519916 KEYWORDS WGS. SOURCE Notocelia uddmanniana ORGANISM Notocelia uddmanniana Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Tortricoidea; Tortricidae; Olethreutinae; Eucosmini; Notocelia. REFERENCE 1 (bases 1 to 20) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (16-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Notocelia uddmanniana whole genome shotgun (WGS) project has the project accession CAJHZS000000000. This version of the project (01) has the accession number CAJHZS010000000, and consists of sequences CAJHZS010000001-CAJHZS010000020. The assembly ilNotUddm1.1 is based on 18x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..20 /organism="Notocelia uddmanniana" /mol_type="genomic DNA" /db_xref="taxon:1594315" WGS CAJHZS010000001-CAJHZS010000020 // LOCUS CAJHZR010000000 30 rc DNA linear INV 25-JAN-2021 DEFINITION Cosmia trapezina, whole genome shotgun sequencing project. ACCESSION CAJHZR000000000 VERSION CAJHZR000000000.1 DBLINK BioProject: PRJEB42026 BioSample: SAMEA7519851 KEYWORDS WGS. SOURCE Cosmia trapezina (dun-bar pinion) ORGANISM Cosmia trapezina Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Ipimorphinae; Cosmia. REFERENCE 1 (bases 1 to 30) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (16-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Cosmia trapezina whole genome shotgun (WGS) project has the project accession CAJHZR000000000. This version of the project (01) has the accession number CAJHZR010000000, and consists of sequences CAJHZR010000001-CAJHZR010000030. The assembly ilCosTrap1.1 is based on 43x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..30 /organism="Cosmia trapezina" /mol_type="genomic DNA" /db_xref="taxon:116126" WGS CAJHZR010000001-CAJHZR010000030 // LOCUS CAJHWV010000000 20 rc DNA linear INV 25-JAN-2021 DEFINITION Thyatira batis, whole genome shotgun sequencing project. ACCESSION CAJHWV000000000 VERSION CAJHWV000000000.1 DBLINK BioProject: PRJEB41953 BioSample: SAMEA7519923 KEYWORDS WGS. SOURCE Thyatira batis ORGANISM Thyatira batis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Drepanoidea; Drepanidae; Thyatirinae; Thyatira. REFERENCE 1 (bases 1 to 20) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (14-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Thyatira batis whole genome shotgun (WGS) project has the project accession CAJHWV000000000. This version of the project (01) has the accession number CAJHWV010000000, and consists of sequences CAJHWV010000001-CAJHWV010000020. The assembly ilThyBati1.1 is based on 29x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..20 /organism="Thyatira batis" /mol_type="genomic DNA" /db_xref="taxon:721163" WGS CAJHWV010000001-CAJHWV010000020 // LOCUS CAJHUS010000000 14 rc DNA linear INV 25-JAN-2021 DEFINITION Blastobasis lacticolella, whole genome shotgun sequencing project. ACCESSION CAJHUS000000000 VERSION CAJHUS000000000.1 DBLINK BioProject: PRJEB41904 BioSample: SAMEA7519826 KEYWORDS WGS. SOURCE Blastobasis lacticolella ORGANISM Blastobasis lacticolella Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Blastobasidae; Blastobasis. REFERENCE 1 (bases 1 to 14) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (11-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Blastobasis lacticolella whole genome shotgun (WGS) project has the project accession CAJHUS000000000. This version of the project (01) has the accession number CAJHUS010000000, and consists of sequences CAJHUS010000001-CAJHUS010000014. The assembly ilBlaLact1.1 is based on 32x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..14 /organism="Blastobasis lacticolella" /mol_type="genomic DNA" /db_xref="taxon:2561016" WGS CAJHUS010000001-CAJHUS010000014 // LOCUS CAJHZQ010000000 11 rc DNA linear INV 25-JAN-2021 DEFINITION Mamestra brassicae, whole genome shotgun sequencing project. ACCESSION CAJHZQ000000000 VERSION CAJHZQ000000000.1 DBLINK BioProject: PRJEB42032 BioSample: SAMEA7524129 KEYWORDS WGS. SOURCE Mamestra brassicae (cabbage moth) ORGANISM Mamestra brassicae Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Hadeninae; Mamestra. REFERENCE 1 (bases 1 to 11) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (16-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Mamestra brassicae whole genome shotgun (WGS) project has the project accession CAJHZQ000000000. This version of the project (01) has the accession number CAJHZQ010000000, and consists of sequences CAJHZQ010000001-CAJHZQ010000011. The assembly ilMamBras1.1 is based on 35x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..11 /organism="Mamestra brassicae" /mol_type="genomic DNA" /db_xref="taxon:55057" WGS CAJHZQ010000001-CAJHZQ010000011 // LOCUS CAJHWY010000000 13 rc DNA linear INV 25-JAN-2021 DEFINITION Pieris rapae, whole genome shotgun sequencing project. ACCESSION CAJHWY000000000 VERSION CAJHWY000000000.1 DBLINK BioProject: PRJEB41952 BioSample: SAMEA7523164 KEYWORDS WGS. SOURCE Pieris rapae (cabbage white) ORGANISM Pieris rapae Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Pieridae; Pierinae; Pieris. REFERENCE 1 (bases 1 to 13) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (14-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Pieris rapae whole genome shotgun (WGS) project has the project accession CAJHWY000000000. This version of the project (01) has the accession number CAJHWY010000000, and consists of sequences CAJHWY010000001-CAJHWY010000013. The assembly ilPieRapa1.1 is based on 56x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..13 /organism="Pieris rapae" /mol_type="genomic DNA" /db_xref="taxon:64459" WGS CAJHWY010000001-CAJHWY010000013 // LOCUS CAJHUF010000000 10 rc DNA linear INV 25-JAN-2021 DEFINITION Nymphalis io, whole genome shotgun sequencing project. ACCESSION CAJHUF000000000 VERSION CAJHUF000000000.1 DBLINK BioProject: PRJEB41894 BioSample: SAMEA7523149 KEYWORDS WGS. SOURCE Nymphalis io (European peacock) ORGANISM Nymphalis io Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Nymphalinae; Nymphalis; Aglais. REFERENCE 1 (bases 1 to 10) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (11-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Nymphalis io whole genome shotgun (WGS) project has the project accession CAJHUF000000000. This version of the project (01) has the accession number CAJHUF010000000, and consists of sequences CAJHUF010000001-CAJHUF010000010. The assembly ilAglIoxx1.1 is based on 64x PacBio data, 10X Genomics Chromium data, and Qiagen Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..10 /organism="Nymphalis io" /mol_type="genomic DNA" /db_xref="taxon:171585" WGS CAJHUF010000001-CAJHUF010000010 // LOCUS CAJHUV010000000 9 rc DNA linear INV 25-JAN-2021 DEFINITION Erynnis tages, whole genome shotgun sequencing project. ACCESSION CAJHUV000000000 VERSION CAJHUV000000000.1 DBLINK BioProject: PRJEB41912 BioSample: SAMEA7523299 KEYWORDS WGS. SOURCE Erynnis tages ORGANISM Erynnis tages Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Hesperioidea; Hesperiidae; Pyrginae; Erynnis. REFERENCE 1 (bases 1 to 9) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (11-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Erynnis tages whole genome shotgun (WGS) project has the project accession CAJHUV000000000. This version of the project (01) has the accession number CAJHUV010000000, and consists of sequences CAJHUV010000001-CAJHUV010000009. The assembly ilEryTage1.1 is based on 29x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..9 /organism="Erynnis tages" /mol_type="genomic DNA" /db_xref="taxon:520884" WGS CAJHUV010000001-CAJHUV010000009 // LOCUS CAJHZK010000000 8 rc DNA linear INV 25-JAN-2021 DEFINITION Endotricha flammealis, whole genome shotgun sequencing project. ACCESSION CAJHZK000000000 VERSION CAJHZK000000000.1 DBLINK BioProject: PRJEB42005 BioSample: SAMEA7519855 KEYWORDS WGS. SOURCE Endotricha flammealis ORGANISM Endotricha flammealis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pyraloidea; Pyralidae; Pyralinae; Endotricha. REFERENCE 1 (bases 1 to 8) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (15-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Endotricha flammealis whole genome shotgun (WGS) project has the project accession CAJHZK000000000. This version of the project (01) has the accession number CAJHZK010000000, and consists of sequences CAJHZK010000001-CAJHZK010000008. The assembly ilEndFlam1.1 is based on 19x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..8 /organism="Endotricha flammealis" /mol_type="genomic DNA" /db_xref="taxon:1101095" WGS CAJHZK010000001-CAJHZK010000008 // LOCUS CAJHUK010000000 6 rc DNA linear INV 25-JAN-2021 DEFINITION Laspeyria flexula, whole genome shotgun sequencing project. ACCESSION CAJHUK000000000 VERSION CAJHUK000000000.1 DBLINK BioProject: PRJEB41886 BioSample: SAMEA7519836 KEYWORDS WGS. SOURCE Laspeyria flexula ORGANISM Laspeyria flexula Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Erebidae; Erebinae; Laspeyria. REFERENCE 1 (bases 1 to 6) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (11-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Laspeyria flexula whole genome shotgun (WGS) project has the project accession CAJHUK000000000. This version of the project (01) has the accession number CAJHUK010000000, and consists of sequences CAJHUK010000001-CAJHUK010000006. The assembly ilLasFlex1.1 is based on 48x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..6 /organism="Laspeyria flexula" /mol_type="genomic DNA" /db_xref="taxon:938238" WGS CAJHUK010000001-CAJHUK010000006 // LOCUS CAJHUZ010000000 7 rc DNA linear INV 25-JAN-2021 DEFINITION Euproctis similis, whole genome shotgun sequencing project. ACCESSION CAJHUZ000000000 VERSION CAJHUZ000000000.1 DBLINK BioProject: PRJEB41916 BioSample: SAMEA7519909 KEYWORDS WGS. SOURCE Euproctis similis ORGANISM Euproctis similis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Erebidae; Lymantriinae; Euproctis. REFERENCE 1 (bases 1 to 7) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (11-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Euproctis similis whole genome shotgun (WGS) project has the project accession CAJHUZ000000000. This version of the project (01) has the accession number CAJHUZ010000000, and consists of sequences CAJHUZ010000001-CAJHUZ010000007. The assembly ilEupSimi1.1 is based on 70x PacBio data, 10X Genomics Chromium data, and Qiagen Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..7 /organism="Euproctis similis" /mol_type="genomic DNA" /db_xref="taxon:987935" WGS CAJHUZ010000001-CAJHUZ010000007 // LOCUS CAJHVH010000000 2 rc DNA linear INV 25-JAN-2021 DEFINITION Hylaea fasciaria, whole genome shotgun sequencing project. ACCESSION CAJHVH000000000 VERSION CAJHVH000000000.1 DBLINK BioProject: PRJEB41918 BioSample: SAMEA7520684 KEYWORDS WGS. SOURCE Hylaea fasciaria ORGANISM Hylaea fasciaria Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Geometroidea; Geometridae; Ennominae; Hylaea. REFERENCE 1 (bases 1 to 2) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (11-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Hylaea fasciaria whole genome shotgun (WGS) project has the project accession CAJHVH000000000. This version of the project (01) has the accession number CAJHVH010000000, and consists of sequences CAJHVH010000001-CAJHVH010000002. The assembly ilHylFasc1.1 is based on 72x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..2 /organism="Hylaea fasciaria" /mol_type="genomic DNA" /db_xref="taxon:722673" WGS CAJHVH010000001-CAJHVH010000002 // LOCUS CAJHUP010000000 2 rc DNA linear INV 25-JAN-2021 DEFINITION Nymphalis urticae, whole genome shotgun sequencing project. ACCESSION CAJHUP000000000 VERSION CAJHUP000000000.1 DBLINK BioProject: PRJEB41896 BioSample: SAMEA7523286 KEYWORDS WGS. SOURCE Nymphalis urticae (small tortoiseshell) ORGANISM Nymphalis urticae Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Nymphalinae; Nymphalis; Aglais. REFERENCE 1 (bases 1 to 2) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (11-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Nymphalis urticae whole genome shotgun (WGS) project has the project accession CAJHUP000000000. This version of the project (01) has the accession number CAJHUP010000000, and consists of sequences CAJHUP010000001-CAJHUP010000002. The assembly ilAglUrti1.1 is based on 58x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with HiCanu, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..2 /organism="Nymphalis urticae" /mol_type="genomic DNA" /db_xref="taxon:111881" WGS CAJHUP010000001-CAJHUP010000002 // LOCUS CAJHZT010000000 2 rc DNA linear INV 25-JAN-2021 DEFINITION Lymantria monacha, whole genome shotgun sequencing project. ACCESSION CAJHZT000000000 VERSION CAJHZT000000000.1 DBLINK BioProject: PRJEB42031 BioSample: SAMEA7519912 KEYWORDS WGS. SOURCE Lymantria monacha (black-arched tussock moth) ORGANISM Lymantria monacha Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Erebidae; Lymantriinae; Lymantria. REFERENCE 1 (bases 1 to 2) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (16-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Lymantria monacha whole genome shotgun (WGS) project has the project accession CAJHZT000000000. This version of the project (01) has the accession number CAJHZT010000000, and consists of sequences CAJHZT010000001-CAJHZT010000002. The assembly ilLymMona1.1 is based on 39x PacBio data, 10X Genomics Chromium data, and Qiagen Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..2 /organism="Lymantria monacha" /mol_type="genomic DNA" /db_xref="taxon:78897" WGS CAJHZT010000001-CAJHZT010000002 // LOCUS CAJHVJ010000000 2 rc DNA linear INV 25-JAN-2021 DEFINITION Aricia agestis, whole genome shotgun sequencing project. ACCESSION CAJHVJ000000000 VERSION CAJHVJ000000000.1 DBLINK BioProject: PRJEB41901 BioSample: SAMEA7523300 KEYWORDS WGS. SOURCE Aricia agestis (brown argus) ORGANISM Aricia agestis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Lycaenidae; Polyommatinae; Aricia. REFERENCE 1 (bases 1 to 2) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (11-DEC-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Aricia agestis whole genome shotgun (WGS) project has the project accession CAJHVJ000000000. This version of the project (01) has the accession number CAJHVJ010000000, and consists of sequences CAJHVJ010000001-CAJHVJ010000002. The assembly ilAriAges1.1 is based on 54x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation with purge_dups, short-read polishing using FreeBayes-called variants from 10X Genomics Chromium reads aligned with LongRanger, and Hi-C based scaffolding with SALSA2. The mitochondrial genome was assembled using MitoHifi. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..2 /organism="Aricia agestis" /mol_type="genomic DNA" /db_xref="taxon:91739" WGS CAJHVJ010000001-CAJHVJ010000002 // LOCUS JACSEX010000000 950 rc DNA linear PRI 19-JAN-2021 DEFINITION Homo sapiens isolate mHomSap3, whole genome shotgun sequencing project. ACCESSION JACSEX000000000 VERSION JACSEX000000000.1 DBLINK BioProject: PRJNA562023 BioSample: SAMN12568975 KEYWORDS WGS. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 950) AUTHORS Jarvis,E.D., Formenti,G., Rhie,A., Mountcastle,J., Haase,B., Balacco,J., Collins,J., Wood,J., Shalmiyev,L., Myers,G., Durbin,R., Phillippy,A., Howe,K. and Fedrigo,O. TITLE Homo sapiens (Human) genome, mHomSap3, maternal haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 950) AUTHORS Jarvis,E.D., Formenti,G., Rhie,A., Mountcastle,J., Haase,B., Balacco,J., Collins,J., Wood,J., Shalmiyev,L., Myers,G., Durbin,R., Phillippy,A., Howe,K. and Fedrigo,O. TITLE Direct Submission JOURNAL Submitted (17-AUG-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Homo sapiens whole genome shotgun (WGS) project has the project accession JACSEX000000000. This version of the project (01) has the accession number JACSEX010000000, and consists of sequences JACSEX010000001-JACSEX010000950. ##Genome-Assembly-Data-START## Assembly Date :: 16-JUL-2020 Assembly Method :: TrioCanu v. 1.8; purge_dups v. 1.0.0; Scaff 10x v. 4.1.0; Bionano solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow polishing and gap filling v. SMRTLink7.0.1; Freebayes v. 1.3.1; gEVAL manual curation v. 2020-07-16; VGP trio assembly pipeline v. 1.6 Assembly Name :: mHomSap3.mat Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 73.27x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..950 /organism="Homo sapiens" /mol_type="genomic DNA" /isolate="mHomSap3" /db_xref="taxon:9606" /sex="male" /tissue_type="blood" WGS JACSEX010000001-JACSEX010000950 WGS_SCAFLD CM028458-CM028481 // LOCUS JACSEW010000000 994 rc DNA linear PRI 19-JAN-2021 DEFINITION Homo sapiens isolate mHomSap3, whole genome shotgun sequencing project. ACCESSION JACSEW000000000 VERSION JACSEW000000000.1 DBLINK BioProject: PRJNA562022 BioSample: SAMN12568975 KEYWORDS WGS. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 994) AUTHORS Jarvis,E.D., Formenti,G., Rhie,A., Mountcastle,J., Haase,B., Balacco,J., Collins,J., Wood,J., Shalmiyev,L., Myers,G., Durbin,R., Phillippy,A., Howe,K. and Fedrigo,O. TITLE Homo sapiens (Human) genome, mHomSap3, paternal haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 994) AUTHORS Jarvis,E.D., Formenti,G., Rhie,A., Mountcastle,J., Haase,B., Balacco,J., Collins,J., Wood,J., Shalmiyev,L., Myers,G., Durbin,R., Phillippy,A., Howe,K. and Fedrigo,O. TITLE Direct Submission JOURNAL Submitted (17-AUG-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Homo sapiens whole genome shotgun (WGS) project has the project accession JACSEW000000000. This version of the project (01) has the accession number JACSEW010000000, and consists of sequences JACSEW010000001-JACSEW010000994. ##Genome-Assembly-Data-START## Assembly Date :: 16-JUL-2020 Assembly Method :: TrioCanu v. 1.8; purge_dups v. 1.0.0; Scaff 10x v. 4.1.0; Bionano solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow polishing and gap filling v. SMRTLink7.0.1; Freebayes v. 1.3.1; gEVAL manual curation v. 2020-07-16; VGP trio assembly pipeline v. 1.6 Assembly Name :: mHomSap3.pat Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 73.27x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..994 /organism="Homo sapiens" /mol_type="genomic DNA" /isolate="mHomSap3" /db_xref="taxon:9606" /sex="male" /tissue_type="blood" WGS JACSEW010000001-JACSEW010000994 WGS_SCAFLD CM028562-CM028584 // LOCUS JAENSK010000000 677 rc DNA linear VRT 19-JAN-2021 DEFINITION Gallus gallus isolate bGalGal1, whole genome shotgun sequencing project. ACCESSION JAENSK000000000 VERSION JAENSK000000000.1 DBLINK BioProject: PRJNA660757 BioSample: SAMN15960293 KEYWORDS WGS. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE 1 (bases 1 to 677) AUTHORS Warren,W., Formenti,G., Fedrigo,O., Haase,B., Mountcastle,J., Balacco,J., Tracey,A., Schneider,V., Okimoto,R., Cheng,H., Hawken,R., Howe,K. and Jarvis,E.D. TITLE Gallus gallus (Chicken) genome, bGalGal1, GRCg7b, maternal haplotype autosomes + Z & W JOURNAL Unpublished REFERENCE 2 (bases 1 to 677) AUTHORS Warren,W., Formenti,G., Fedrigo,O., Haase,B., Mountcastle,J., Balacco,J., Tracey,A., Schneider,V., Okimoto,R., Cheng,H., Hawken,R., Howe,K. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (14-NOV-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Gallus gallus whole genome shotgun (WGS) project has the project accession JAENSK000000000. This version of the project (01) has the accession number JAENSK010000000, and consists of sequences JAENSK010000001-JAENSK010000677. ##Genome-Assembly-Data-START## Assembly Date :: 22-JUL-2020 Assembly Method :: TrioCanu v. 1.8; purge_dups v. 1.0.0; Scaff 10x v. 4.1.0; Bionano solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow polishing and gap filling v. SMRTLink7.0.1; Freebayes v. 1.3.1; gEVAL manual curation v. 2020-07-22; VGP trio assembly pipeline v. 1.6 Assembly Name :: bGalGal1.mat.broiler.GRCg7b Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 102.01x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..677 /organism="Gallus gallus" /mol_type="genomic DNA" /isolate="bGalGal1" /db_xref="taxon:9031" /sex="female" /tissue_type="blood" /country="USA: Fayetteville" /lat_lon="36.0822 N 94.1719 W" /collection_date="20-May-2019" /collected_by="Nick Anthony" WGS JAENSK010000001-JAENSK010000677 WGS_SCAFLD CM028482-CM028522 WGS_SCAFLD CM028585 WGS_SCAFLD MU179258-MU179279 // LOCUS VXIV02000000 3547 rc DNA linear INV 19-JAN-2021 DEFINITION Bugula neritina isolate Kwan_BN1, whole genome shotgun sequencing project. ACCESSION VXIV00000000 VERSION VXIV00000000.2 DBLINK BioProject: PRJNA498596 BioSample: SAMN10319711 KEYWORDS WGS. SOURCE Bugula neritina ORGANISM Bugula neritina Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Bryozoa; Gymnolaemata; Cheilostomatida; Flustrina; Buguloidea; Bugulidae; Bugula. REFERENCE 1 (bases 1 to 3547) AUTHORS Rayko,M., Komissarov,A., Kwan,J.C., Lim-Fong,G., Rhodes,A.C., Kliver,S., Kuchur,P., O'Brien,S.J. and Lopez,J.V. TITLE Draft genome of Bugula neritina, a colonial animal packing powerful symbionts and potential medicines JOURNAL Sci Data 7 (1), 356 (2020) PUBMED 33082320 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3547) AUTHORS Raiko,M., Komissarov,A., Rhodes,A., Kliver,S., Lim-Fong,G., Kwan,J., O'Brien,S.J. and Lopez,J.V. TITLE Direct Submission JOURNAL Submitted (18-SEP-2019) Center for Algorithmic Biotechnology, Saint-Petersburg State University, 6 linia V.O., 11/21d., Saint-Petersburg, Saint-Petersburg 199004, Russia REFERENCE 3 (bases 1 to 3547) AUTHORS Rayko,M. TITLE Direct Submission JOURNAL Submitted (25-JUN-2020) Center for Algorithmic Biotechnology, Saint-Petersburg State University, 6 linia V.O., 11/21d., Saint-Petersburg, Saint-Petersburg 199004, Russia COMMENT On Aug 3, 2020 this sequence version replaced VXIV00000000.1. The Bugula neritina whole genome shotgun (WGS) project has the project accession VXIV00000000. This version of the project (02) has the accession number VXIV02000000, and consists of sequences VXIV02000001-VXIV02003547. ##Genome-Assembly-Data-START## Assembly Date :: 15-OCT-2019 Assembly Method :: Canu v. 1.2 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 24.0x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..3547 /organism="Bugula neritina" /mol_type="genomic DNA" /isolate="Kwan_BN1" /isolation_source="Public floating docks" /db_xref="taxon:10212" /country="USA: Oyster, Virginia" /lat_lon="37.288 N 75.923 W" /collection_date="2015-08" WGS VXIV02000001-VXIV02003547 WGS_SCAFLD CM021311 // LOCUS JADDOH010000000 25153 rc DNA linear INV 15-JAN-2021 DEFINITION Agrypnia vestita isolate Avestita_ramseycounty, whole genome shotgun sequencing project. ACCESSION JADDOH000000000 VERSION JADDOH000000000.1 DBLINK BioProject: PRJNA668166 BioSample: SAMN16399168 KEYWORDS WGS. SOURCE Agrypnia vestita ORGANISM Agrypnia vestita Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Trichoptera; Integripalpia; Plenitentoria; Phryganeoidea; Phryganeidae; Phryganeinae; Agrypnia. REFERENCE 1 (bases 1 to 25153) AUTHORS Olsen,L.K., Heckenhauer,J., Sproul,J.S., Dikow,R.B., Gonzalez,V.L., Kweskin,M.P., Taylor,A.M., Wilson,S.B., Stewart,R.J., Zhou,X., Holzenthal,R., Pauls,S.U. and Frandsen,P.B. TITLE De Novo Whole Genome Assemblies of Agrypnia vestita Walker, and Hesperophlax magnus Banks reveal significant repetitive element expanion in Tube Case-making Caddisflies (Insecta: Trichoptera) JOURNAL Unpublished REFERENCE 2 (bases 1 to 25153) AUTHORS Frandsen,P., Wilson,S., Olsen,L., Taylor,A. and Dikow,R. TITLE Direct Submission JOURNAL Submitted (19-OCT-2020) Plant and Wildlife Sciences, Brigham Young University, 800 N 580 E St, Provo, UT 84606, USA COMMENT The Agrypnia vestita whole genome shotgun (WGS) project has the project accession JADDOH000000000. This version of the project (01) has the accession number JADDOH010000000, and consists of sequences JADDOH010000001-JADDOH010025153. ##Genome-Assembly-Data-START## Assembly Date :: AUG-2019 Assembly Method :: MaSuRCA v. v.3.1.1 Assembly Name :: BYU_agryp_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 106x Sequencing Technology :: PacBio RSII; Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..25153 /organism="Agrypnia vestita" /mol_type="genomic DNA" /isolate="Avestita_ramseycounty" /isolation_source="Stream" /db_xref="taxon:763278" /tissue_type="Whole Body" /country="USA: Ramsey County, Minnesota" /lat_lon="45.0325 N 93.17793 W" /altitude="287 m" /collection_date="2016-08-16" WGS JADDOH010000001-JADDOH010025153 // LOCUS JADDOG010000000 6877 rc DNA linear INV 15-JAN-2021 DEFINITION Hesperophylax magnus isolate Hmagnus_saltlakecounty, whole genome shotgun sequencing project. ACCESSION JADDOG000000000 VERSION JADDOG000000000.1 DBLINK BioProject: PRJNA668166 BioSample: SAMN16399083 KEYWORDS WGS. SOURCE Hesperophylax magnus ORGANISM Hesperophylax magnus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Trichoptera; Integripalpia; Plenitentoria; Limnephiloidea; Limnephilidae; Limnephilinae; Limnephilini; Hesperophylax. REFERENCE 1 (bases 1 to 6877) AUTHORS Olsen,L.K., Heckenhauer,J., Sproul,J.S., Dikow,R.B., Gonzalez,V.L., Kweskin,M.P., Taylor,A.M., Wilson,S.B., Stewart,R.J., Zhou,X., Holzenthal,R., Pauls,S.U. and Frandsen,P.B. TITLE De Novo Whole Genome Assemblies of Agrypnia vestita Walker, and Hesperophlax magnus Banks reveal significant repetitive element expanion in Tube Case-making Caddisflies (Insecta: Trichoptera) JOURNAL Unpublished REFERENCE 2 (bases 1 to 6877) AUTHORS Frandsen,P., Wilson,S., Olsen,L., Taylor,A. and Dikow,R. TITLE Direct Submission JOURNAL Submitted (19-OCT-2020) Plant and Wildlife Sciences, Brigham Young University, 800 N 580 E St, Provo, UT 84606, USA COMMENT The Hesperophylax magnus whole genome shotgun (WGS) project has the project accession JADDOG000000000. This version of the project (01) has the accession number JADDOG010000000, and consists of sequences JADDOG010000001-JADDOG010006877. ##Genome-Assembly-Data-START## Assembly Date :: AUG-2019 Assembly Method :: MaSuRCA v. v.3.1.1 Assembly Name :: BYU_hespero_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 75x Sequencing Technology :: Oxford Nanopore MinION; Illumina NovaSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..6877 /organism="Hesperophylax magnus" /mol_type="genomic DNA" /isolate="Hmagnus_saltlakecounty" /isolation_source="Stream" /db_xref="taxon:1188115" /tissue_type="Whole Body" /dev_stage="Pupae" /country="USA: Salt Lake County Utah" /lat_lon="40.774273 N 111.817617 W" /altitude="1577 m" /collection_date="Jul-2018" /identified_by="Paul Frandsen" WGS JADDOG010000001-JADDOG010006877 // LOCUS JACEEU010000000 1205 rc DNA linear VRT 13-JAN-2021 DEFINITION Callionymus lyra isolate C_lyra_F025, whole genome shotgun sequencing project. ACCESSION JACEEU000000000 VERSION JACEEU000000000.1 DBLINK BioProject: PRJNA634838 BioSample: SAMN15526017 KEYWORDS WGS. SOURCE Callionymus lyra (dragonet) ORGANISM Callionymus lyra Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Callionymoidei; Callionymidae; Callionymus; Callionymus. REFERENCE 1 (bases 1 to 1205) AUTHORS Winter,S., Prost,S., de Raad,J., Coimbra,R.T.F., Wolf,M., Nebenfuehr,M., Held,A., Kurzawe,M., Papapostolou,R., Tessien,J., Bludau,J., Kelch,A., Gronefeld,S., Schoeneberg,Y., Zeitz,C., Zapf,K., Prochotta,D., Murphy,M., Sheffer,M.M., Sonnewald,M., Nilsson,M.A. and Janke,A. TITLE Chromosome-level genome assembly of a benthic associated Syngnathiformes species: the common dragonet, Callionymus lyra JOURNAL GigaByte 2020, 1-10 (2020) REMARK DOI: 10.46471/gigabyte.6 REFERENCE 2 (bases 1 to 1205) AUTHORS Winter,S. TITLE Direct Submission JOURNAL Submitted (20-JUL-2020) Biodiversity and Climate Research Centre, Senckenberg Nature Research Society, Senckenberganlage 25, Frankfurt am Main 60325, Germany COMMENT The Callionymus lyra whole genome shotgun (WGS) project has the project accession JACEEU000000000. This version of the project (01) has the accession number JACEEU010000000, and consists of sequences JACEEU010000001-JACEEU010001205. ##Genome-Assembly-Data-START## Assembly Method :: wtdbg2 v. 2.2 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 55.0x Sequencing Technology :: Oxford Nanopore MinION ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1205 /organism="Callionymus lyra" /mol_type="genomic DNA" /isolate="C_lyra_F025" /db_xref="taxon:34785" /sex="female" /tissue_type="muscle" /dev_stage="adult" /country="North Sea" WGS JACEEU010000001-JACEEU010001205 // LOCUS JAEAGN010000000 4121 rc DNA linear VRT 06-JAN-2021 DEFINITION Salvelinus namaycush isolate Seneca, whole genome shotgun sequencing project. ACCESSION JAEAGN000000000 VERSION JAEAGN000000000.1 DBLINK BioProject: PRJNA682269 BioSample: SAMN16985724 KEYWORDS WGS. SOURCE Salvelinus namaycush (lake trout) ORGANISM Salvelinus namaycush Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus. REFERENCE 1 (bases 1 to 4121) AUTHORS Smith,S., Normandeau,E., Djambazian,H., Mudiyanselage,P., Ragoussis,J., Wilson,C., Muir,A., Penney,C., Luikart,G., Scribner,K. and Bernatchez,L. TITLE A chromosome-anchored genome assembly for lake trout (Salvelinus namaycush) JOURNAL Unpublished REFERENCE 2 (bases 1 to 4121) AUTHORS Smith,S., Normandeau,E., Djambazian,H., Mudiyanselage,P., Ragoussis,J., Wilson,C., Muir,A., Penney,C., Luikart,G., Scribner,K. and Bernatchez,L. TITLE Direct Submission JOURNAL Submitted (03-DEC-2020) Department of Biology, Universite Laval, 1030, Avenue de la Medecine, Quebec City, Quebec G1V 0A6, Canada COMMENT The Salvelinus namaycush whole genome shotgun (WGS) project has the project accession JAEAGN000000000. This version of the project (01) has the accession number JAEAGN010000000, and consists of sequences JAEAGN010000001-JAEAGN010004121. ##Genome-Assembly-Data-START## Assembly Date :: 12-NOV-2020 Assembly Method :: FALCON v. smrtlink-release_6.0.0.47841; Arrow v. smrtlink-release_6.0.0.47841; Pilon v. 1.23; Salsa v. 2.2; Chromonomer v. 1.13; PBSuite (PBJelly) v. 15.8.24; MaSuRCA (POLCA) v. 3.4.2 Assembly Name :: SaNama_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 89.0x Sequencing Technology :: PacBio Sequel; Illumina HiSeq; Hi-C ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..4121 /organism="Salvelinus namaycush" /mol_type="genomic DNA" /isolate="Seneca" /db_xref="taxon:8040" /sex="female" /tissue_type="white muscle" WGS JAEAGN010000001-JAEAGN010004121 WGS_SCAFLD CM028250-CM028292 // LOCUS VZSA01000000 6043 rc DNA linear VRT 29-DEC-2020 DEFINITION Melospiza melodia isolate OUT-0008, whole genome shotgun sequencing project. ACCESSION VZSA00000000 VERSION VZSA00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253982 KEYWORDS WGS. SOURCE Melospiza melodia (song sparrow) ORGANISM Melospiza melodia Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Melospiza. REFERENCE 1 (bases 1 to 6043) AUTHORS Feng,S., Stiller,J., Deng,Y., Armstrong,J., Fang,Q., Reeve,A.H., Xie,D., Chen,G., Guo,C., Faircloth,B.C., Petersen,B., Wang,Z., Zhou,Q., Diekhans,M., Chen,W., Andreu-Sanchez,S., Margaryan,A., Howard,J.T., Parent,C., Pacheco,G., Sinding,M.S., Puetz,L., Cavill,E., Ribeiro,A.M., Eckhart,L., Fjeldsa,J., Hosner,P.A., Brumfield,R.T., Christidis,L., Bertelsen,M.F., Sicheritz-Ponten,T., Tietze,D.T., Robertson,B.C., Song,G., Borgia,G., Claramunt,S., Lovette,I.J., Cowen,S.J., Njoroge,P., Dumbacher,J.P., Ryder,O.A., Fuchs,J., Bunce,M., Burt,D.W., Cracraft,J., Meng,G., Hackett,S.J., Ryan,P.G., Jonsson,K.A., Jamieson,I.G., da Fonseca,R.R., Braun,E.L., Houde,P., Mirarab,S., Suh,A., Hansson,B., Ponnikas,S., Sigeman,H., Stervander,M., Frandsen,P.B., van der Zwan,H., van der Sluis,R., Visser,C., Balakrishnan,C.N., Clark,A.G., Fitzpatrick,J.W., Bowman,R., Chen,N., Cloutier,A., Sackton,T.B., Edwards,S.V., Foote,D.J., Shakya,S.B., Sheldon,F.H., Vignal,A., Soares,A.E.R., Shapiro,B., Gonzalez-Solis,J., Ferrer-Obiol,J., Rozas,J., Riutort,M., Tigano,A., Friesen,V., Dalen,L., Urrutia,A.O., Szekely,T., Liu,Y., Campana,M.G., Corvelo,A., Fleischer,R.C., Rutherford,K.M., Gemmell,N.J., Dussex,N., Mouritsen,H., Thiele,N., Delmore,K., Liedvogel,M., Franke,A., Hoeppner,M.P., Krone,O., Fudickar,A.M., Mila,B., Ketterson,E.D., Fidler,A.E., Friis,G., Parody-Merino,A.M., Battley,P.F., Cox,M.P., Lima,N.C.B., Prosdocimi,F., Parchman,T.L., Schlinger,B.A., Loiselle,B.A., Blake,J.G., Lim,H.C., Day,L.B., Fuxjager,M.J., Baldwin,M.W., Braun,M.J., Wirthlin,M., Dikow,R.B., Ryder,T.B., Camenisch,G., Keller,L.F., DaCosta,J.M., Hauber,M.E., Louder,M.I.M., Witt,C.C., McGuire,J.A., Mudge,J., Megna,L.C., Carling,M.D., Wang,B., Taylor,S.A., Del-Rio,G., Aleixo,A., Vasconcelos,A.T.R., Mello,C.V., Weir,J.T., Haussler,D., Li,Q., Yang,H., Wang,J., Lei,F., Rahbek,C., Gilbert,M.T.P., Graves,G.R., Jarvis,E.D., Paten,B. and Zhang,G. TITLE Dense sampling of bird diversity increases power of comparative genomics JOURNAL Nature 587 (7833), 252-257 (2020) PUBMED 33177665 REFERENCE 2 (bases 1 to 6043) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 3 (bases 1 to 6043) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Melospiza melodia whole genome shotgun (WGS) project has the project accession VZSA00000000. This version of the project (01) has the accession number VZSA01000000, and consists of sequences VZSA01000001-VZSA01006043. ##Genome-Assembly-Data-START## Assembly Method :: Platanus; PBJelly v. 1.2.4; 15.8.24 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 368x Sequencing Technology :: ILLUMINA; PACBIO_SMRT ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..6043 /organism="Melospiza melodia" /mol_type="genomic DNA" /isolate="OUT-0008" /specimen_voucher="UBC:243185379" /db_xref="taxon:44397" /sex="male" /tissue_type="blood" /country="Canada" /lat_lon="48.63 N 123.28 W" /collection_date="Apr-2015" WGS VZSA01000001-VZSA01006043 // LOCUS JABVCD010000000 802 rc DNA linear VRT 20-DEC-2020 DEFINITION Dromaius novaehollandiae isolate ZJU1.0, whole genome shotgun sequencing project. ACCESSION JABVCD000000000 VERSION JABVCD000000000.1 DBLINK BioProject: PRJNA638233 BioSample: SAMN15183959 KEYWORDS WGS. SOURCE Dromaius novaehollandiae (emu) ORGANISM Dromaius novaehollandiae Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Casuariiformes; Dromaiidae; Dromaius. REFERENCE 1 (bases 1 to 802) AUTHORS Liu,J., Wang,Z. and Li,J. TITLE 3D avian chromosome evolution revealed by comparative analyses of the new emu genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 802) AUTHORS Liu,J., Wang,Z. and Li,J. TITLE Direct Submission JOURNAL Submitted (10-JUN-2020) Life Sciences Institute, Zhejiang University, 866 Yuhangtang Road, Hangzhou, Zhejiang 310058, China COMMENT The Dromaius novaehollandiae whole genome shotgun (WGS) project has the project accession JABVCD000000000. This version of the project (01) has the accession number JABVCD010000000, and consists of sequences JABVCD010000001-JABVCD010000802. ##Genome-Assembly-Data-START## Assembly Method :: FALCON-Unzip v. git 12072017 Assembly Name :: ZJU1.0 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 70.0x Sequencing Technology :: PacBio RSII ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..802 /organism="Dromaius novaehollandiae" /mol_type="genomic DNA" /isolate="ZJU1.0" /db_xref="taxon:8790" /sex="female" /tissue_type="multiple" /dev_stage="adult" WGS JABVCD010000001-JABVCD010000802 WGS_SCAFLD CM027945-CM027975 // LOCUS WNMQ02000000 161 rc DNA linear VRT 22-DEC-2020 DEFINITION Catharus ustulatus isolate bCatUst1, whole genome shotgun sequencing project. ACCESSION WNMQ00000000 VERSION WNMQ00000000.2 DBLINK BioProject: PRJNA561933 BioSample: SAMN12618602 KEYWORDS WGS. SOURCE Catharus ustulatus (Swainson's thrush) ORGANISM Catharus ustulatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Turdidae; Catharus. REFERENCE 1 (bases 1 to 161) AUTHORS Delmore,K., Vafadar,M., Formenti,G., Chow,W., Pelan,S., Howe,K., Rhie,A., Mountcastle,J., Haase,B., Fedrigo,O. and Jarvis,E.D. TITLE Catharus ustulatus (Swainson's thrush) genome, bCatUst1, primary haplotype v2 JOURNAL Unpublished REFERENCE 2 (bases 1 to 161) AUTHORS Delmore,K., Vafadar,M., Formenti,G., Chow,W., Pelan,S., Howe,K., Rhie,A., Mountcastle,J., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (14-NOV-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA REFERENCE 3 (bases 1 to 161) AUTHORS Delmore,K., Vafadar,M., Formenti,G., Chow,W., Pelan,S., Howe,K., Rhie,A., Mountcastle,J., Haase,B., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (19-OCT-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT On Nov 4, 2020 this sequence version replaced WNMQ00000000.1. The Catharus ustulatus whole genome shotgun (WGS) project has the project accession WNMQ00000000. This version of the project (02) has the accession number WNMQ02000000, and consists of sequences WNMQ02000001-WNMQ02000161. ##Genome-Assembly-Data-START## Assembly Date :: 06-AUG-2020 Assembly Method :: FALCON v. DX 1.9.0; FALCON-Unzip v. 6.0.0.47841; purge_dups github v. purge_haplotig (bitbucket v1.0.3+ 1.Nov.2018); Scaff10x v. 2; Bionano Solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow polishing and gap filling v. Smrtlink_6.0.0.47841; Longranger Align v. 2.2.2; freebayes v. 1.3.1; gEVAL manual curation v. 2020-08-06; VGP assembly pipeline v. 1.5 Assembly Name :: bCatUst1.pri.v2 Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 60.58x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..161 /organism="Catharus ustulatus" /mol_type="genomic DNA" /isolate="bCatUst1" /db_xref="taxon:91951" /sex="female" /tissue_type="blood" /dev_stage="adult" /country="Canada: Kamloops" /lat_lon="50.67613 N 120.33787 W" /collection_date="15-Jul-2018" /collected_by="Kira Delmore" WGS WNMQ02000001-WNMQ02000161 WGS_SCAFLD CM020336-CM020353 WGS_SCAFLD CM020355-CM020378 // LOCUS JADRJE010000000 311 rc DNA linear MAM 09-DEC-2020 DEFINITION Tachyglossus aculeatus isolate mTacAcu1, whole genome shotgun sequencing project. ACCESSION JADRJE000000000 VERSION JADRJE000000000.1 DBLINK BioProject: PRJNA607237 BioSample: SAMN12634963 KEYWORDS WGS. SOURCE Tachyglossus aculeatus (Australian echidna) ORGANISM Tachyglossus aculeatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Monotremata; Tachyglossidae; Tachyglossus. REFERENCE 1 (bases 1 to 311) AUTHORS Zhang,G., Gedman,G., Zhou,Y., Formenti,G., Howard,J., Daish,T., Grutzner,F., Korlach,J., Pelan,S., Chow,W., Howe,K. and Jarvis,E.D. TITLE Tachyglossus aculeatus (Short-beaked echidna) genome, mTacAcu1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 311) AUTHORS Zhang,G., Gedman,G., Zhou,Y., Formenti,G., Howard,J., Daish,T., Grutzner,F., Korlach,J., Pelan,S., Chow,W., Howe,K. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (21-NOV-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Tachyglossus aculeatus whole genome shotgun (WGS) project has the project accession JADRJE000000000. This version of the project (01) has the accession number JADRJE010000000, and consists of sequences JADRJE010000001-JADRJE010000311. ##Genome-Assembly-Data-START## Assembly Date :: 26-OCT-2020 Assembly Method :: FALCON v. falcon-2018.31.08-03.06; FALCON-Unzip v. 6.0.0.47841; purge_dups v. github ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b; Scaff10x v. 4.1.0; Bionano Solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Polish pbgcpp v. 1.9.0; Longranger Align v. 2.2.2; freebayes v. 1.3.1; gEVAL manual curation v. 2020-09-17; Manual Curation v. 2020-10-26; VGP assembly pipeline v. 1.6 Assembly Name :: mTacAcu1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 58.29x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Bionano Genomics DLS; Phase Genomics ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..311 /organism="Tachyglossus aculeatus" /mol_type="genomic DNA" /isolate="mTacAcu1" /db_xref="taxon:9261" /sex="male" /tissue_type="liver" /dev_stage="adult" /country="Australia: Upper Barnard River, New South Wales" /lat_lon="31.647305 S 151.500011 E" /collected_by="Tasman Daish, Frank Grutzner" WGS JADRJE010000001-JADRJE010000311 WGS_SCAFLD CM027595-CM027631 // LOCUS WSPM02000000 8999 rc DNA linear VRT 08-DEC-2020 DEFINITION Dermochelys coriacea isolate rDerCor1, whole genome shotgun sequencing project. ACCESSION WSPM00000000 VERSION WSPM00000000.2 DBLINK BioProject: PRJNA561994 BioSample: SAMN12629498 KEYWORDS WGS. SOURCE Dermochelys coriacea (leatherback sea turtle) ORGANISM Dermochelys coriacea Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Dermochelyidae; Dermochelys. REFERENCE 1 (bases 1 to 8999) AUTHORS Komoroske,L., Fedrigo,O., Mountcastle,J., Uliano Da Silva,M., Haase,B., Formenti,G., Chow,W., Howe,K., Gilbert,M.T.P., Flicek,P., Gemmell,N., Marques,T., Scott,A., Murphy,R., Bgorndal,K., Braun,E., Tracey,A., Sims,Y., Thibaud-Nissen,F., Rhie,A., Phillippy,A. and Jarvis,E.D. TITLE (UPDATE)Dermochelys coriacea (Leatherback Sea Turtle) genome, rDerCor1, alternate haplotype, v2 JOURNAL Unpublished REFERENCE 2 (bases 1 to 8999) AUTHORS Komoroske,L., Fedrigo,O., Mountcastle,J., Uliano Da Silva,M., Haase,B., Formenti,G., Chow,W., Howe,K., Gilbert,M.T.P., Flicek,P., Gemmell,N., Marques,T., Scott,A., Murphy,R., Bgorndal,K., Braun,E., Rhie,A., Phillippy,A. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (05-DEC-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA REFERENCE 3 (bases 1 to 8999) AUTHORS Komoroske,L., Fedrigo,O., Mountcastle,J., Uliano Da Silva,M., Haase,B., Formenti,G., Chow,W., Howe,K., Gilbert,M.T.P., Flicek,P., Gemmell,N., Marques,T., Scott,A., Murphy,R., Bgorndal,K., Braun,E., Tracey,A., Sims,Y., Thibaud-Nissen,F., Rhie,A., Phillippy,A. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (21-NOV-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT On Dec 8, 2020 this sequence version replaced WSPM00000000.1. The Dermochelys coriacea whole genome shotgun (WGS) project has the project accession WSPM00000000. This version of the project (02) has the accession number WSPM02000000, and consists of sequences WSPM02000001-WSPM02008999. ##Genome-Assembly-Data-START## Assembly Date :: 06-NOV-2020 Assembly Method :: FALCON DNANexus v. 1.9.0; FALCON-Unzip DNANexus v. 1.0.6; purge_dups v. v1; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2020-11-06; VGP assembly pipeline individual v. 1.6 Assembly Name :: rDerCor1.alt.v2 Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 63.68x Sequencing Technology :: PacBio Sequel I CLR; llumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..8999 /organism="Dermochelys coriacea" /mol_type="genomic DNA" /isolate="rDerCor1" /db_xref="taxon:27794" /sex="male" /tissue_type="blood" /dev_stage="adult" /country="USA: Half Moon Bay, California" /lat_lon="37.46311 N 122.4293 W" /collection_date="26-Sep-2017" /collected_by="Lisa Komoroske" WGS WSPM02000001-WSPM02008999 // LOCUS JADRJF010000000 3482 rc DNA linear MAM 08-DEC-2020 DEFINITION Tachyglossus aculeatus isolate mTacAcu1, whole genome shotgun sequencing project. ACCESSION JADRJF000000000 VERSION JADRJF000000000.1 DBLINK BioProject: PRJNA607238 BioSample: SAMN12634963 KEYWORDS WGS. SOURCE Tachyglossus aculeatus (Australian echidna) ORGANISM Tachyglossus aculeatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Monotremata; Tachyglossidae; Tachyglossus. REFERENCE 1 (bases 1 to 3482) AUTHORS Zhang,G., Gedman,G., Zhou,Y., Formenti,G., Howard,J., Daish,T., Grutzner,F., Korlach,J., Pelan,S., Chow,W., Howe,K. and Jarvis,E.D. TITLE Tachyglossus aculeatus (Short-beaked echidna) genome, mTacAcu1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 3482) AUTHORS Zhang,G., Gedman,G., Zhou,Y., Formenti,G., Howard,J., Daish,T., Grutzner,F., Korlach,J., Pelan,S., Chow,W., Howe,K. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (21-NOV-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Tachyglossus aculeatus whole genome shotgun (WGS) project has the project accession JADRJF000000000. This version of the project (01) has the accession number JADRJF010000000, and consists of sequences JADRJF010000001-JADRJF010003482. ##Genome-Assembly-Data-START## Assembly Date :: 17-SEP-2020 Assembly Method :: FALCON v. falcon-2018.31.08-03.06; FALCON-Unzip v. 6.0.0.47841; purge_dups v. github ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b; Scaff10x v. 4.1.0; Bionano Solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Polish pbgcpp v. 1.9.0; Longranger Align v. 2.2.2; freebayes v. 1.3.1; gEVAL manual curation v. 2020-09-17; VGP assembly pipeline v. 1.6 Assembly Name :: mTacAcu1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 58.29x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Bionano Genomics DLS; Phase Genomics ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..3482 /organism="Tachyglossus aculeatus" /mol_type="genomic DNA" /isolate="mTacAcu1" /db_xref="taxon:9261" /sex="male" /tissue_type="liver" /dev_stage="adult" /country="Australia: Upper Barnard River, New South Wales" /lat_lon="31.647305 S 151.500011 E" /collected_by="Tasman Daish, Frank Grutzner" WGS JADRJF010000001-JADRJF010003482 // LOCUS JADBBS010000000 343877 rc DNA linear ROD 04-DEC-2020 DEFINITION Hydrochoerus hydrochaeris isolate Pop, whole genome shotgun sequencing project. ACCESSION JADBBS000000000 VERSION JADBBS000000000.1 DBLINK BioProject: PRJNA512907 BioSample: SAMN15801460 KEYWORDS WGS. SOURCE Hydrochoerus hydrochaeris (capybara) ORGANISM Hydrochoerus hydrochaeris Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Hydrochaeridae; Hydrochoerus. REFERENCE 1 (bases 1 to 343877) AUTHORS Dudchenko,O., Omer,A.D., Khan,R., Colaric,Z., Weisz,D. and Aiden,E.L. TITLE Direct Submission JOURNAL Submitted (30-SEP-2020) Molecular and Human Genetics, Baylor College of Medicine, 1 Baylor Plaza, Houston, TX 77030, USA COMMENT The Hydrochoerus hydrochaeris whole genome shotgun (WGS) project has the project accession JADBBS000000000. This version of the project (01) has the accession number JADBBS010000000, and consists of sequences JADBBS010000001-JADBBS010343877. ##Genome-Assembly-Data-START## Assembly Date :: 03-AUG-2020 Assembly Method :: 3D-DNA v. 2020; JBAT v. 2020 Assembly Name :: Hydrochoerus_hydrochaeris_HiC Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 74x Sequencing Technology :: Illumina NovaSeq 6000 ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..343877 /organism="Hydrochoerus hydrochaeris" /mol_type="genomic DNA" /isolate="Pop" /db_xref="taxon:10149" /sex="male" /tissue_type="cephalic blood" /collection_date="2015-10-30" WGS JADBBS010000001-JADBBS010343877 WGS_SCAFLD CM027413-CM027445 // LOCUS JADBBT010000000 524013 rc DNA linear MAM 04-DEC-2020 DEFINITION Sylvilagus bachmani isolate Sample2420, whole genome shotgun sequencing project. ACCESSION JADBBT000000000 VERSION JADBBT000000000.1 DBLINK BioProject: PRJNA512907 BioSample: SAMN15801470 KEYWORDS WGS. SOURCE Sylvilagus bachmani (brush rabbit) ORGANISM Sylvilagus bachmani Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Sylvilagus. REFERENCE 1 (bases 1 to 524013) AUTHORS Dudchenko,O., Omer,A.D., Khan,R., Colaric,Z., Weisz,D. and Aiden,E.L. TITLE Direct Submission JOURNAL Submitted (08-SEP-2020) Molecular and Human Genetics, Baylor College of Medicine, 1 Baylor Plaza, Houston, TX 77030, USA COMMENT The Sylvilagus bachmani whole genome shotgun (WGS) project has the project accession JADBBT000000000. This version of the project (01) has the accession number JADBBT010000000, and consists of sequences JADBBT010000001-JADBBT010524013. ##Genome-Assembly-Data-START## Assembly Date :: 01-JUL-2020 Assembly Method :: 3D-DNA v. 2020; JBAT v. 2020 Assembly Name :: Sylvilagus_bachmani_HiC Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 125x Sequencing Technology :: Illumina NovaSeq 6000 ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..524013 /organism="Sylvilagus bachmani" /mol_type="genomic DNA" /isolate="Sample2420" /db_xref="taxon:365149" /sex="female" /tissue_type="primary fibroblast CL" /collection_date="1976-11-26" WGS JADBBT010000001-JADBBT010524013 WGS_SCAFLD CM027386-CM027409 // LOCUS JACYVU010000000 757 rc DNA linear ROD 02-DEC-2020 DEFINITION Rattus norvegicus strain BN/NHsdMcwi, whole genome shotgun sequencing project. ACCESSION JACYVU000000000 VERSION JACYVU000000000.1 DBLINK BioProject: PRJNA662791 BioSample: SAMN16261960 KEYWORDS WGS. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 757) AUTHORS Howe,K. TITLE Rattus norvegicus chromosome-scale genome assembly, mRatBN7.1 JOURNAL Unpublished REFERENCE 2 (bases 1 to 757) AUTHORS Howe,K. CONSRTM Wellcome Sanger Institute TITLE Direct Submission JOURNAL Submitted (17-SEP-2020) Tree of Life Genomics, Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SA, United Kingdom COMMENT The Rattus norvegicus whole genome shotgun (WGS) project has the project accession JACYVU000000000. This version of the project (01) has the accession number JACYVU010000000, and consists of sequences JACYVU010000001-JACYVU010000757. ##Genome-Assembly-Data-START## Assembly Date :: 20-MAY-2020 Assembly Method :: FALCON-Unzip v. 2020 Assembly Name :: mRatBN7.1 Diploid :: Principal Pseudohaplotype Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 92.0x Sequencing Technology :: PacBio Sequel; 10X Genomics Chromium; BioNano; Arima Hi-C ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..757 /organism="Rattus norvegicus" /mol_type="genomic DNA" /strain="BN/NHsdMcwi" /db_xref="taxon:10116" /sex="male" /tissue_type="kidney" /country="USA: Wisconsin, Milwaukee, Medical College of Wisconsin" /collection_date="2019-03-08" /collected_by="Rebecca Schilling" WGS JACYVU010000001-JACYVU010000757 WGS_SCAFLD CM026974-CM026996 WGS_SCAFLD MU150189-MU150227 // LOCUS JACYVV010000000 3156 rc DNA linear ROD 02-DEC-2020 DEFINITION Rattus norvegicus strain BN/NHsdMcwi, whole genome shotgun sequencing project. ACCESSION JACYVV000000000 VERSION JACYVV000000000.1 DBLINK BioProject: PRJNA663241 BioSample: SAMN16261960 KEYWORDS WGS. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 3156) AUTHORS Howe,K. TITLE Rattus norvegicus chromosome-scale genome assembly, mRatBN7.1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 3156) AUTHORS Howe,K. CONSRTM Wellcome Sanger Institute TITLE Direct Submission JOURNAL Submitted (17-SEP-2020) Tree of Life Genomics, Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SA, United Kingdom COMMENT The Rattus norvegicus whole genome shotgun (WGS) project has the project accession JACYVV000000000. This version of the project (01) has the accession number JACYVV010000000, and consists of sequences JACYVV010000001-JACYVV010003156. ##Genome-Assembly-Data-START## Assembly Date :: 20-MAY-2020 Assembly Method :: FALCON-Unzip v. 2020 Assembly Name :: mRatBN7.1 alternate haplotype Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 92.0x Sequencing Technology :: PacBio Sequel; 10X Genomics Chromium; BioNano; Arima Hi-C ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..3156 /organism="Rattus norvegicus" /mol_type="genomic DNA" /strain="BN/NHsdMcwi" /db_xref="taxon:10116" /sex="male" /tissue_type="kidney" /country="USA: Wisconsin, Milwaukee, Medical College of Wisconsin" /collection_date="2019-03-08" /collected_by="Rebecca Schilling" WGS JACYVV010000001-JACYVV010003156 // LOCUS JACGAL010000000 755 rc DNA linear VRT 23-NOV-2020 DEFINITION Anas platyrhynchos breed Pekin duck isolate Z2, whole genome shotgun sequencing project. ACCESSION JACGAL000000000 VERSION JACGAL000000000.1 DBLINK BioProject: PRJNA636121 BioSample: SAMN15588841 KEYWORDS WGS. SOURCE Anas platyrhynchos (mallard) ORGANISM Anas platyrhynchos Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas. REFERENCE 1 (bases 1 to 755) AUTHORS Li,J. TITLE A new duck genome reveals conserved and convergently evolved chromosome architectures of birds and mammals JOURNAL Unpublished REFERENCE 2 (bases 1 to 755) AUTHORS Li,J. TITLE Direct Submission JOURNAL Submitted (01-JUN-2020) Life Sciences Institute, Zhejiang University, 866 Yuhangtang Road, Hangzhou, Zhejiang 310058, China COMMENT The Anas platyrhynchos whole genome shotgun (WGS) project has the project accession JACGAL000000000. This version of the project (01) has the accession number JACGAL010000000, and consists of sequences JACGAL010000001-JACGAL010000755. ##Genome-Assembly-Data-START## Assembly Method :: FALCON-Unzip v. git 12072017 Assembly Name :: ZJU1.0 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 143.0x Sequencing Technology :: PacBio RSII; PacBio Sequel ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..755 /organism="Anas platyrhynchos" /mol_type="genomic DNA" /isolate="Z2" /db_xref="taxon:8839" /sex="pooled male and female" /tissue_type="multiple" /dev_stage="adult" /note="breed: Pekin duck" WGS JACGAL010000001-JACGAL010000755 WGS_SCAFLD CM027243-CM027275 // LOCUS WNMR02000000 3601 rc DNA linear VRT 05-NOV-2020 DEFINITION Catharus ustulatus isolate bCatUst1, whole genome shotgun sequencing project. ACCESSION WNMR00000000 VERSION WNMR00000000.2 DBLINK BioProject: PRJNA561934 BioSample: SAMN12618602 KEYWORDS WGS. SOURCE Catharus ustulatus (Swainson's thrush) ORGANISM Catharus ustulatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Turdidae; Catharus. REFERENCE 1 (bases 1 to 3601) AUTHORS Delmore,K., Vafadar,M., Formenti,G., Chow,W., Pelan,S., Howe,K., Rhie,A., Mountcastle,J., Haase,B., Fedrigo,O. and Jarvis,E.D. TITLE Catharus ustulatus (Swainson's thrush) genome, bCatUst1, alternate haplotype v2 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3601) AUTHORS Delmore,K., Vafadar,M., Formenti,G., Chow,W., Pelan,S., Howe,K., Rhie,A., Mountcastle,J., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (14-NOV-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA REFERENCE 3 (bases 1 to 3601) AUTHORS Delmore,K., Vafadar,M., Formenti,G., Chow,W., Pelan,S., Howe,K., Rhie,A., Mountcastle,J., Haase,B., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (19-OCT-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT On Nov 5, 2020 this sequence version replaced WNMR00000000.1. The Catharus ustulatus whole genome shotgun (WGS) project has the project accession WNMR00000000. This version of the project (02) has the accession number WNMR02000000, and consists of sequences WNMR02000001-WNMR02003601. ##Genome-Assembly-Data-START## Assembly Date :: 06-AUG-2020 Assembly Method :: FALCON 1.3.0 v. DX 1.9.0; FALCON-Unzip v. 6.0.0.47841; purge_dups github v. purge_haplotig (bitbucket v1.0.3+ 1.Nov.2018); Scaff10x v. 2; Bionano Solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow polishing and gap filling v. Smrtlink_6.0.0.47841; Longranger Align v. 2.2.2; freebayes v. 1.3.1; gEVAL manual curation v. 2020-08-06; VGP assembly pipeline v. 1.5 Assembly Name :: bCatUst1.alt.v2 Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 60.58x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..3601 /organism="Catharus ustulatus" /mol_type="genomic DNA" /isolate="bCatUst1" /db_xref="taxon:91951" /sex="female" /tissue_type="blood" /dev_stage="adult" /country="Canada: Kamloops" /lat_lon="50.67613 N 120.33787 W" /collection_date="15-Jul-2018" /collected_by="Kira Delmore" WGS WNMR02000001-WNMR02003601 // LOCUS JADCNG010000000 11980 rc DNA linear MAM 02-NOV-2020 DEFINITION Choloepus didactylus isolate mChoDid1, whole genome shotgun sequencing project. ACCESSION JADCNG000000000 VERSION JADCNG000000000.1 DBLINK BioProject: PRJNA561938 BioSample: SAMN12612024 KEYWORDS WGS. SOURCE Choloepus didactylus (southern two-toed sloth) ORGANISM Choloepus didactylus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Xenarthra; Pilosa; Folivora; Megalonychidae; Choloepus. REFERENCE 1 (bases 1 to 11980) AUTHORS Mazzoni,C., Uliano-Silva,M., Winkler,S., Myers,G., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Choloepus didactylus (Linnaeus's two-toed sloth) genome, mChoDid1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 11980) AUTHORS Mazzoni,C., Uliano-Silva,M., Winkler,S., Myers,G., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (12-OCT-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Choloepus didactylus whole genome shotgun (WGS) project has the project accession JADCNG000000000. This version of the project (01) has the accession number JADCNG010000000, and consists of sequences JADCNG010000001-JADCNG010011980. ##Genome-Assembly-Data-START## Assembly Date :: 14-SEP-2020 Assembly Method :: FALCON v. falcon-2018.31.08-03.06; FALCON-Unzip v. 6.0.0.47841; purge_dups v. github ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b; Scaff10x v. 4.1.0; Bionano Solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Polish pbgcpp v. 1.9.0; Longranger Align v. 2.2.2; freebayes v. 1.3.1; gEVAL manual curation v. 2020-09-14; VGP assembly pipeline v. 1.6 Assembly Name :: mChoDid1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 56.84x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..11980 /organism="Choloepus didactylus" /mol_type="genomic DNA" /isolate="mChoDid1" /db_xref="taxon:27675" /sex="male" /tissue_type="spleen" /dev_stage="adult" /country="Germany: Tierpark, Berlin" /lat_lon="52.520008 N 13.404954 E" /collection_date="03-Mar-2014" /collected_by="Gudrun Wibbelt" WGS JADCNG010000001-JADCNG010011980 // LOCUS JADCQP010000000 8370 rc DNA linear VRT 02-NOV-2020 DEFINITION Falco rusticolus isolate bFalRus1, whole genome shotgun sequencing project. ACCESSION JADCQP000000000 VERSION JADCQP000000000.1 DBLINK BioProject: PRJNA561989 BioSample: SAMN12629496 KEYWORDS WGS. SOURCE Falco rusticolus (gyrfalcon) ORGANISM Falco rusticolus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Falconiformes; Falconidae; Falco. REFERENCE 1 (bases 1 to 8370) AUTHORS Al-Ajli,F., Tracey,A., Sims,Y., Howe,K., Formenti,G., Fedrigo,O., Jarvis,E.D. and Ayub,Q. TITLE Falco rusticolus (Gyrfalcon) genome, bFalRus1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 8370) AUTHORS Al-Ajli,F., Tracey,A., Sims,Y., Howe,K., Formenti,G., Fedrigo,O., Jarvis,E.D. and Ayub,Q. TITLE Direct Submission JOURNAL Submitted (19-OCT-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Falco rusticolus whole genome shotgun (WGS) project has the project accession JADCQP000000000. This version of the project (01) has the accession number JADCQP010000000, and consists of sequences JADCQP010000001-JADCQP010008370. ##Genome-Assembly-Data-START## Assembly Date :: 20-JUL-2020 Assembly Method :: FALCON v. falcon-2018.31.08-03.06; FALCON-Unzip v. 6.0.0.47841; purge_dups github v. ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b; Scaff10x v. 4.1.0; Bionano Solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Polish v. pbgcpp:1.9.0; Longranger Align v. 2.2.2; freebayes v. 1.3.1; gEVAL manual curation v. 2020-07-20; VGP assembly pipeline v. 1.6 Assembly Name :: bFalRus1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 44.28x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..8370 /organism="Falco rusticolus" /mol_type="genomic DNA" /isolate="bFalRus1" /db_xref="taxon:120794" /sex="female" /tissue_type="blood" /dev_stage="juvenile" /country="Qatar" /lat_lon="25.5 N 51.25 E" /collection_date="11-Apr-2019" /collected_by="Farooq Al-Ajli, Souq Waqif Falcon Hospital" WGS JADCQP010000001-JADCQP010008370 // LOCUS JADFAV010000000 1751 rc DNA linear VRT 02-NOV-2020 DEFINITION Pygocentrus nattereri isolate fPygNat1, whole genome shotgun sequencing project. ACCESSION JADFAV000000000 VERSION JADFAV000000000.1 DBLINK BioProject: PRJNA561976 BioSample: SAMN12623623 KEYWORDS WGS. SOURCE Pygocentrus nattereri (red-bellied piranha) ORGANISM Pygocentrus nattereri Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Pygocentrus. REFERENCE 1 (bases 1 to 1751) AUTHORS Myers,G., Meyer,A., Karagic,N., Pippel,M., Winkler,S., Tracey,A., Wood,J., Formenti,G., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Pygocentrus nattereri (red-bellied piranha) genome, fPygNat1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 1751) AUTHORS Myers,G., Meyer,A., Karagic,N., Pippel,M., Winkler,S., Tracey,A., Wood,J., Formenti,G., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (28-OCT-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Pygocentrus nattereri whole genome shotgun (WGS) project has the project accession JADFAV000000000. This version of the project (01) has the accession number JADFAV010000000, and consists of sequences JADFAV010000001-JADFAV010001751. ##Genome-Assembly-Data-START## Assembly Date :: 13-MAR-2020 Assembly Method :: FALCON v. 2018.31.08-03.06; FALCON-Unzip v. 7.0.1.66975; purge_dups v. v1; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.4; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. SMRTLink7.0.; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2020-03-13; VGP assembly pipeline individual v. 1.6 Assembly Name :: fPygNat1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 77.77x Sequencing Technology :: PacBio Sequel I CLR; llumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1751 /organism="Pygocentrus nattereri" /mol_type="genomic DNA" /isolate="fPygNat1" /db_xref="taxon:42514" /sex="male" /tissue_type="liver" /dev_stage="adult" /country="Netherlands: Dejong Marinelife, Rotterdam" /lat_lon="51.9244201 N 4.4777325 E" /collection_date="21-Nov-2018" /collected_by="Nidal Karagic" WGS JADFAV010000001-JADFAV010001751 // LOCUS JADFAU010000000 56 rc DNA linear VRT 03-NOV-2020 DEFINITION Pygocentrus nattereri isolate fPygNat1, whole genome shotgun sequencing project. ACCESSION JADFAU000000000 VERSION JADFAU000000000.1 DBLINK BioProject: PRJNA561975 BioSample: SAMN12623623 KEYWORDS WGS. SOURCE Pygocentrus nattereri (red-bellied piranha) ORGANISM Pygocentrus nattereri Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Pygocentrus. REFERENCE 1 (bases 1 to 56) AUTHORS Myers,G., Meyer,A., Karagic,N., Pippel,M., Winkler,S., Tracey,A., Wood,J., Formenti,G., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Pygocentrus nattereri (red-bellied piranha) genome, fPygNat1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 56) AUTHORS Myers,G., Meyer,A., Karagic,N., Pippel,M., Winkler,S., Tracey,A., Wood,J., Formenti,G., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (28-OCT-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Pygocentrus nattereri whole genome shotgun (WGS) project has the project accession JADFAU000000000. This version of the project (01) has the accession number JADFAU010000000, and consists of sequences JADFAU010000001-JADFAU010000056. ##Genome-Assembly-Data-START## Assembly Date :: 13-MAR-2020 Assembly Method :: FALCON v. 2018.31.08-03.06; FALCON-Unzip v. 7.0.1.66975; purge_dups v. v1; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.4; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. SMRTLink7.0.1; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2020-03-13; VGP assembly pipeline individual v. 1.6 Assembly Name :: fPygNat1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 77.77x Sequencing Technology :: PacBio Sequel I CLR; llumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..56 /organism="Pygocentrus nattereri" /mol_type="genomic DNA" /isolate="fPygNat1" /db_xref="taxon:42514" /sex="male" /tissue_type="liver" /dev_stage="adult" /country="Netherlands: Dejong Marinelife, Rotterdam" /lat_lon="51.9244201 N 4.4777325 E" /collection_date="21-Nov-2018" /collected_by="Nidal Karagic" WGS JADFAU010000001-JADFAU010000056 WGS_SCAFLD CM026721-CM026751 // LOCUS JADCQQ010000000 139 rc DNA linear VRT 03-NOV-2020 DEFINITION Sebastes umbrosus isolate fSebUmb1, whole genome shotgun sequencing project. ACCESSION JADCQQ000000000 VERSION JADCQQ000000000.1 DBLINK BioProject: PRJNA562005 BioSample: SAMN12629503 KEYWORDS WGS. SOURCE Sebastes umbrosus (honeycomb rockfish) ORGANISM Sebastes umbrosus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Scorpaenoidei; Sebastidae; Sebastinae; Sebastes. REFERENCE 1 (bases 1 to 139) AUTHORS Sudmant,P., Kolora,S.R., Gomez,M.J., Formenti,G., Mcdevitt,S., Mountcastle,J., Tracey,A., Sims,Y., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Sebastes umbrosus (Honeycomb rockfish) genome, fSebUmb1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 139) AUTHORS Sudmant,P., Kolora,S.R., Gomez,M.J., Formenti,G., Mcdevitt,S., Mountcastle,J., Tracey,A., Sims,Y., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (19-OCT-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Sebastes umbrosus whole genome shotgun (WGS) project has the project accession JADCQQ000000000. This version of the project (01) has the accession number JADCQQ010000000, and consists of sequences JADCQQ010000001-JADCQQ010000139. ##Genome-Assembly-Data-START## Assembly Date :: 07-SEP-2020 Assembly Method :: FALCON v. falcon-2018.31.08-03.06; FALCON-Unzip v. 6.0.0.47841; purge_dups v. github ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b; Scaff10x x v. 3.2.1_04122018; Bionano Solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Polish pbgcpp v. 1.9.0; Longranger Align v. 2.2.2; freebayes v. 1.3.1; gEVAL manual curation v. 2020-09-07; VGP assembly pipeline v. 1.6 Assembly Name :: fSebUmb1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 45.05x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..139 /organism="Sebastes umbrosus" /mol_type="genomic DNA" /isolate="fSebUmb1" /db_xref="taxon:72105" /sex="male" /tissue_type="muscle" /dev_stage="adult" /country="USA: California coast" /lat_lon="33.599833 N 118.265167 W" /collection_date="05-Oct-2017" /collected_by="University of Washington" WGS JADCQQ010000001-JADCQQ010000139 WGS_SCAFLD CM026752-CM026775 WGS_SCAFLD CM026822 // LOCUS JADCQO010000000 133 rc DNA linear VRT 03-NOV-2020 DEFINITION Falco rusticolus isolate bFalRus1, whole genome shotgun sequencing project. ACCESSION JADCQO000000000 VERSION JADCQO000000000.1 DBLINK BioProject: PRJNA561988 BioSample: SAMN12629496 KEYWORDS WGS. SOURCE Falco rusticolus (gyrfalcon) ORGANISM Falco rusticolus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Falconiformes; Falconidae; Falco. REFERENCE 1 (bases 1 to 133) AUTHORS Al-Ajli,F., Tracey,A., Sims,Y., Howe,K., Formenti,G., Fedrigo,O., Jarvis,E.D. and Ayub,Q. TITLE Falco rusticolus (Gyrfalcon) genome, bFalRus1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 133) AUTHORS Al-Ajli,F., Tracey,A., Sims,Y., Howe,K., Formenti,G., Fedrigo,O., Jarvis,E.D. and Ayub,Q. TITLE Direct Submission JOURNAL Submitted (19-OCT-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Falco rusticolus whole genome shotgun (WGS) project has the project accession JADCQO000000000. This version of the project (01) has the accession number JADCQO010000000, and consists of sequences JADCQO010000001-JADCQO010000133. ##Genome-Assembly-Data-START## Assembly Date :: 20-JUL-2020 Assembly Method :: FALCON v. falcon-2018.31.08-03.06; FALCON-Unzip v. 6.0.0.47841; purge_dups github v. ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b; Scaff10x v. 4.1.0; Bionano Solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Polish v. pbgcpp:1.9.0; Longranger Align v. 2.2.2; freebayes v. 1.3.1; gEVAL manual curation v. 2020-07-20; VGP assembly pipeline v. 1.6 Assembly Name :: bFalRus1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 44.28x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..133 /organism="Falco rusticolus" /mol_type="genomic DNA" /isolate="bFalRus1" /db_xref="taxon:120794" /sex="female" /tissue_type="blood" /dev_stage="juvenile" /country="Qatar" /lat_lon="25.5 N 51.25 E" /collection_date="11-Apr-2019" /collected_by="Farooq Al-Ajli, Souq Waqif Falcon Hospital" WGS JADCQO010000001-JADCQO010000133 WGS_SCAFLD CM026666-CM026689 WGS_SCAFLD CM026719 // LOCUS JADCQK010000000 253 rc DNA linear VRT 03-NOV-2020 DEFINITION Pogoniulus pusillus isolate bPogPus1, whole genome shotgun sequencing project. ACCESSION JADCQK000000000 VERSION JADCQK000000000.1 DBLINK BioProject: PRJNA637953 BioSample: SAMN15098508 KEYWORDS WGS. SOURCE Pogoniulus pusillus (Red-fronted tinkerbird) ORGANISM Pogoniulus pusillus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Piciformes; Lybiidae; Pogoniulus. REFERENCE 1 (bases 1 to 253) AUTHORS Kirschel,A.N.G., Monadjem,A., Lukhele,S., Formenti,G., Mountcastle,J., Haase,B., Balacco,J., Pelan,S., Chow,W., Fedrigo,O. and Jarvis,E.D. TITLE Pogoniulus pusillus (red-fronted tinkerbird) genome, bPogPus1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 253) AUTHORS Kirschel,A.N.G., Monadjem,A., Lukhele,S., Formenti,G., Mountcastle,J., Haase,B., Balacco,J., Pelan,S., Chow,W., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (13-OCT-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Pogoniulus pusillus whole genome shotgun (WGS) project has the project accession JADCQK000000000. This version of the project (01) has the accession number JADCQK010000000, and consists of sequences JADCQK010000001-JADCQK010000253. ##Genome-Assembly-Data-START## Assembly Date :: 14-MAY-2020 Assembly Method :: FALCON v. 1.3.0 2018.31.08-03.06; FALCON-Unzip v. 1.2.0 6.0.0.47841; purge_dups v. github ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b; bionano Solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow polishing and gap filling v. SMRTLink7.0.1; Longranger Align v. 2.2.2; freebayes v. 1.3.1; gEVAL manual curation v. 2020-05-14; VGP assembly pipeline v. 1.6 Assembly Name :: bPogPus1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 165.44x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..253 /organism="Pogoniulus pusillus" /mol_type="genomic DNA" /isolate="bPogPus1" /db_xref="taxon:488313" /sex="female" /tissue_type="blood" /dev_stage="adult" /country="Eswatini" /collection_date="2019-03-07" /collected_by="Alex Kirschel" WGS JADCQK010000001-JADCQK010000253 WGS_SCAFLD CM026776-CM026821 WGS_SCAFLD CM026823 // LOCUS JADCNF010000000 146 rc DNA linear MAM 03-NOV-2020 DEFINITION Choloepus didactylus isolate mChoDid1, whole genome shotgun sequencing project. ACCESSION JADCNF000000000 VERSION JADCNF000000000.1 DBLINK BioProject: PRJNA561937 BioSample: SAMN12612024 KEYWORDS WGS. SOURCE Choloepus didactylus (southern two-toed sloth) ORGANISM Choloepus didactylus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Xenarthra; Pilosa; Folivora; Megalonychidae; Choloepus. REFERENCE 1 (bases 1 to 146) AUTHORS Mazzoni,C., Uliano-Silva,M., Winkler,S., Myers,G., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Choloepus didactylus (Linnaeus's two-toed sloth) genome, mChoDid1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 146) AUTHORS Mazzoni,C., Uliano-Silva,M., Winkler,S., Myers,G., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (12-OCT-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Choloepus didactylus whole genome shotgun (WGS) project has the project accession JADCNF000000000. This version of the project (01) has the accession number JADCNF010000000, and consists of sequences JADCNF010000001-JADCNF010000146. ##Genome-Assembly-Data-START## Assembly Date :: 14-SEP-2020 Assembly Method :: FALCON v. falcon-2018.31.08-03.06; FALCON-Unzip v. 6.0.0.47841; purge_dups github v. ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b; Scaff10x v. 4.1.0; Bionano Solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Polish pbgcpp v. 1.9.0; Longranger Align v. 2.2.2; freebayes v. 1.3.1; gEVAL manual curation v. 2020-09-14; VGP assembly pipeline v. 1.6 Assembly Name :: mChoDid1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 56.84x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..146 /organism="Choloepus didactylus" /mol_type="genomic DNA" /isolate="mChoDid1" /db_xref="taxon:27675" /sex="male" /tissue_type="spleen" /dev_stage="adult" /country="Germany: Tierpark, Berlin" /lat_lon="52.520008 N 13.404954 E" /collection_date="03-Mar-2014" /collected_by="Gudrun Wibbelt" WGS JADCNF010000001-JADCNF010000146 WGS_SCAFLD CM026690-CM026718 WGS_SCAFLD CM026720 // LOCUS JADCQR010000000 2131 rc DNA linear VRT 02-NOV-2020 DEFINITION Sebastes umbrosus isolate fSebUmb1, whole genome shotgun sequencing project. ACCESSION JADCQR000000000 VERSION JADCQR000000000.1 DBLINK BioProject: PRJNA562006 BioSample: SAMN12629503 KEYWORDS WGS. SOURCE Sebastes umbrosus (honeycomb rockfish) ORGANISM Sebastes umbrosus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Scorpaenoidei; Sebastidae; Sebastinae; Sebastes. REFERENCE 1 (bases 1 to 2131) AUTHORS Sudmant,P., Kolora,S.R., Gomez,M.J., Formenti,G., Mcdevitt,S., Mountcastle,J., Tracey,A., Sims,Y., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Sebastes umbrosus (Honeycomb rockfish) genome, fSebUmb1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 2131) AUTHORS Sudmant,P., Kolora,S.R., Gomez,M.J., Formenti,G., Mcdevitt,S., Mountcastle,J., Tracey,A., Sims,Y., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (19-OCT-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Sebastes umbrosus whole genome shotgun (WGS) project has the project accession JADCQR000000000. This version of the project (01) has the accession number JADCQR010000000, and consists of sequences JADCQR010000001-JADCQR010002131. ##Genome-Assembly-Data-START## Assembly Date :: 07-SEP-2020 Assembly Method :: FALCON v. falcon-2018.31.08-03.06; FALCON-Unzip v. 6.0.0.47841; purge_dups v. github ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b; Scaff10x v. 3.2.1_04122018; Bionano Solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Polish pbgcpp v. 1.9.0; Longranger Align v. 2.2.2; freebayes v. 1.3.1; gEVAL manual curation v. 2020-09-07; VGP assembly pipeline v. 1.6 Assembly Name :: fSebUmb1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 45.05x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..2131 /organism="Sebastes umbrosus" /mol_type="genomic DNA" /isolate="fSebUmb1" /db_xref="taxon:72105" /sex="male" /tissue_type="muscle" /dev_stage="adult" /country="USA: California coast" /lat_lon="33.599833 N 118.265167 W" /collection_date="05-Oct-2017" /collected_by="University of Washington" WGS JADCQR010000001-JADCQR010002131 // LOCUS JADCQL010000000 2748 rc DNA linear VRT 02-NOV-2020 DEFINITION Pogoniulus pusillus isolate bPogPus1, whole genome shotgun sequencing project. ACCESSION JADCQL000000000 VERSION JADCQL000000000.1 DBLINK BioProject: PRJNA637954 BioSample: SAMN15098508 KEYWORDS WGS. SOURCE Pogoniulus pusillus (Red-fronted tinkerbird) ORGANISM Pogoniulus pusillus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Piciformes; Lybiidae; Pogoniulus. REFERENCE 1 (bases 1 to 2748) AUTHORS Kirschel,A.N.G., Mondadjem,A., Lukhele,S., Formenti,G., Mountcastle,J., Haase,B., Balacco,J., Pelan,S., Chow,W., Fedrigo,O. and Jarvis,E.D. TITLE Pogoniulus pusillus (red-fronted tinkerbird) genome, bPogPus1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 2748) AUTHORS Kirschel,A.N.G., Mondadjem,A., Lukhele,S., Formenti,G., Mountcastle,J., Haase,B., Balacco,J., Pelan,S., Chow,W., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (13-OCT-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Pogoniulus pusillus whole genome shotgun (WGS) project has the project accession JADCQL000000000. This version of the project (01) has the accession number JADCQL010000000, and consists of sequences JADCQL010000001-JADCQL010002748. ##Genome-Assembly-Data-START## Assembly Date :: 14-MAY-2020 Assembly Method :: FALCON v. 1.3.0 2018.31.08-03.06; FALCON-Unzip v. 1.2.0 6.0.0.47841; purge_dups v. github ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b; bionano Solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow polishing and gap filling v. SMRTLink7.0.1; Longranger Align v. 2.2.2; freebayes v. 1.3.1; gEVAL manual curation v. 2020-05-14; VGP assembly pipeline v. 1.6 Assembly Name :: bPogPus1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 165.44x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..2748 /organism="Pogoniulus pusillus" /mol_type="genomic DNA" /isolate="bPogPus1" /db_xref="taxon:488313" /sex="female" /tissue_type="blood" /dev_stage="adult" /country="Eswatini" /collection_date="2019-03-07" /collected_by="Alex Kirschel" WGS JADCQL010000001-JADCQL010002748 // LOCUS VTFK01000000 1614 rc DNA linear INV 26-OCT-2020 DEFINITION Plectrocnemia conspersa isolate PO2, whole genome shotgun sequencing project. ACCESSION VTFK00000000 VERSION VTFK00000000.1 DBLINK BioProject: PRJNA558902 BioSample: SAMN12501725 KEYWORDS WGS. SOURCE Plectrocnemia conspersa ORGANISM Plectrocnemia conspersa Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Trichoptera; Annulipalpia; Psychomyioidea; Polycentropodidae; Polycentropodinae; Plectrocnemia. REFERENCE 1 (bases 1 to 1614) AUTHORS Heckenhauer,J., Frandsen,P.B., Gupta,D.K., Paule,J., Prost,S., Schell,T., Schneider,J.V., Stewart,R.J. and Pauls,S.U. TITLE Annotated Draft Genomes of Two Caddisfly Species Plectrocnemia conspersa CURTIS and Hydropsyche tenuis NAVAS (Insecta: Trichoptera) JOURNAL Genome Biol Evol 11 (12), 3445-3451 (2019) PUBMED 31774498 REFERENCE 2 (bases 1 to 1614) AUTHORS Heckenhauer,J., Schell,T., Gupta,D.K. and Pauls,S.U. TITLE Direct Submission JOURNAL Submitted (27-AUG-2019) LOEWE Centre for Translational Biodiversity, Senckenberg Research Institute and Natural History Mus, Senckenberganlage 25, Frankfurt 60325, Germany COMMENT The Plectrocnemia conspersa whole genome shotgun (WGS) project has the project accession VTFK00000000. This version of the project (01) has the accession number VTFK01000000, and consists of sequences VTFK01000001-VTFK01001614. ##Genome-Assembly-Data-START## Assembly Date :: 18-MAR-2019 Assembly Method :: wtdbg2 v. 2.4 Polishing Method :: Racon v. 1.3.1; Pilon v. 1.22 Assembly Name :: P_conspersa_v1 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 100.0x Sequencing Technology :: Oxford Nanopore MinION; Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1614 /organism="Plectrocnemia conspersa" /mol_type="genomic DNA" /isolate="PO2" /isolation_source="freshwater stream" /db_xref="taxon:161770" /tissue_type="DNA" /country="Germany: Bavarian Forest" /collection_date="Jun-2018" WGS VTFK01000001-VTFK01001614 // LOCUS VTON01000000 403 rc DNA linear INV 26-OCT-2020 DEFINITION Hydropsyche tenuis isolate HT1, whole genome shotgun sequencing project. ACCESSION VTON00000000 VERSION VTON00000000.1 DBLINK BioProject: PRJNA558902 BioSample: SAMN12501726 KEYWORDS WGS. SOURCE Hydropsyche tenuis ORGANISM Hydropsyche tenuis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Trichoptera; Annulipalpia; Hydropsychoidea; Hydropsychidae; Hydropsychinae; Hydropsyche. REFERENCE 1 (bases 1 to 403) AUTHORS Heckenhauer,J., Frandsen,P.B., Gupta,D.K., Paule,J., Prost,S., Schell,T., Schneider,J.V., Stewart,R.J. and Pauls,S.U. TITLE Annotated Draft Genomes of Two Caddisfly Species Plectrocnemia conspersa CURTIS and Hydropsyche tenuis NAVAS (Insecta: Trichoptera) JOURNAL Genome Biol Evol 11 (12), 3445-3451 (2019) PUBMED 31774498 REFERENCE 2 (bases 1 to 403) AUTHORS Heckenhauer,J. TITLE Direct Submission JOURNAL Submitted (28-AUG-2019) /Senckenberg Research Institute and Natural History Museum, LOEWE Centre for Translational Biodiversity, Senckenberganlage 25, Frankfurt 60325, Germany COMMENT The Hydropsyche tenuis whole genome shotgun (WGS) project has the project accession VTON00000000. This version of the project (01) has the accession number VTON01000000, and consists of sequences VTON01000001-VTON01000403. ##Genome-Assembly-Data-START## Assembly Date :: 16-MAR-2019 Assembly Method :: wtdbg2 v. 2.4 Polishing Method :: Racon v. 1.3.1; Pilon v. 1.22 Assembly Name :: HT1_wtdbg2_racon_pilon Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 280.0x Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MinION ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..403 /organism="Hydropsyche tenuis" /mol_type="genomic DNA" /isolate="HT1" /isolation_source="freshwater stream" /db_xref="taxon:577407" /tissue_type="DNA" /country="Germany: Bavarian Forest" /collection_date="Jun-2018" WGS VTON01000001-VTON01000403 // LOCUS CAJHBV010000000 349 rc DNA linear VRT 10-OCT-2020 DEFINITION Acanthopagrus latus isolate v.2019, whole genome shotgun sequencing project. ACCESSION CAJHBV000000000 VERSION CAJHBV000000000.1 DBLINK BioProject: PRJEB40701 BioSample: SAMN16236878 KEYWORDS WGS. SOURCE Acanthopagrus latus (yellowfin seabream) ORGANISM Acanthopagrus latus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Spariformes; Sparidae; Acanthopagrus. REFERENCE 1 (bases 1 to 349) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (08-OCT-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Acanthopagrus latus whole genome shotgun (WGS) project has the project accession CAJHBV000000000. This version of the project (01) has the accession number CAJHBV010000000, and consists of sequences CAJHBV010000001-CAJHBV010000349. The assembly fAcaLat1.1 is based on 60x Illumina genome survey data, 106x Illumina Hi-C data, 282x PacBio data, and 100x Illumina transcriptome data generated at Nextomics Biosciences. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig separation with purge_dups, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds are named by synteny to the GCA_900880675.1 assembly of Sparus aurata. FEATURES Location/Qualifiers source 1..349 /organism="Acanthopagrus latus" /mol_type="genomic DNA" /isolate="v.2019" /db_xref="taxon:8177" WGS CAJHBV010000001-CAJHBV010000349 // LOCUS CAJHBW010000000 41 rc DNA linear VRT 10-OCT-2020 DEFINITION Acanthopagrus latus isolate v.2019, whole genome shotgun sequencing project. ACCESSION CAJHBW000000000 VERSION CAJHBW000000000.1 DBLINK BioProject: PRJEB40700 BioSample: SAMN16236878 KEYWORDS WGS. SOURCE Acanthopagrus latus (yellowfin seabream) ORGANISM Acanthopagrus latus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Spariformes; Sparidae; Acanthopagrus. REFERENCE 1 (bases 1 to 41) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (08-OCT-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Acanthopagrus latus whole genome shotgun (WGS) project has the project accession CAJHBW000000000. This version of the project (01) has the accession number CAJHBW010000000, and consists of sequences CAJHBW010000001-CAJHBW010000041. The assembly fAcaLat1.1 is based on 60x Illumina genome survey data, 106x Illumina Hi-C data, 282x PacBio data, and 100x Illumina transcriptome data generated at Nextomics Biosciences. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig separation with purge_dups, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds are named by synteny to the GCA_900880675.1 assembly of Sparus aurata. FEATURES Location/Qualifiers source 1..41 /organism="Acanthopagrus latus" /mol_type="genomic DNA" /isolate="v.2019" /db_xref="taxon:8177" WGS CAJHBW010000001-CAJHBW010000041 // LOCUS VNFC03000000 106 rc DNA linear MAM 02-OCT-2020 DEFINITION Balaenoptera musculus isolate JJ_BM4_2016_0621, whole genome shotgun sequencing project. ACCESSION VNFC00000000 VERSION VNFC00000000.3 DBLINK BioProject: PRJNA554522 BioSample: SAMN12287136 KEYWORDS WGS. SOURCE Balaenoptera musculus (Blue whale) ORGANISM Balaenoptera musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Mysticeti; Balaenopteridae; Balaenoptera. REFERENCE 1 (bases 1 to 106) AUTHORS Bukhman,Y.V., Chu,L.-F., Meyer,S., Rhie,A., Wood,J., Jacobsen,J.K., Antosiewicz-Bourget,J., Argus,C., Bolin,J., Jiang,P., Mamott,D., Swanson,S.A., Morin,P.A., Formenti,G., Phillippy,A., Howe,K., Fedrigo,O., Jarvis,E.D., Thomson,J.A. and Stewart,R. TITLE Balaenoptera musculus (blue whale) genome, mBalMus1.3, primary haplotype v3 JOURNAL Unpublished REFERENCE 2 (bases 1 to 106) AUTHORS Bukhman,Y.V., Chu,L.-F., Meyer,S., Rhie,A., Wood,J., Jacobsen,J.K., Antosiewicz-Bourget,J., Argus,C., Bolin,J., Jiang,P., Mamott,D., Swanson,S.A., Morin,P.A., Formenti,G., Phillippy,A., Howe,K., Fedrigo,O., Jarvis,E., Thomson,J.A. and Stewart,R. TITLE Direct Submission JOURNAL Submitted (19-JUL-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA REFERENCE 3 (bases 1 to 106) AUTHORS Bukhman,Y.V., Chu,L.-F., Meyer,S., Rhie,A., Wood,J., Jacobsen,J.K., Antosiewicz-Bourget,J., Argus,C., Bolin,J., Jiang,P., Mamott,D., Swanson,S.A., Morin,P.A., Formenti,G., Phillippy,A., Howe,K., Fedrigo,O., Jarvis,E.D., Thomson,J.A. and Stewart,R. TITLE Direct Submission JOURNAL Submitted (17-AUG-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT On Sep 30, 2020 this sequence version replaced VNFC00000000.2. The Balaenoptera musculus whole genome shotgun (WGS) project has the project accession VNFC00000000. This version of the project (03) has the accession number VNFC03000000, and consists of sequences VNFC03000001-VNFC03000106. This assembly represents the principal haplotype of the diploid genome Balaenoptera musculus and includes the chromosomes. The alternate haplotype sequences are in WGS project VNFD00000000. ##Genome-Assembly-Data-START## Assembly Date :: 25-OCT-2019 Assembly Method :: FALCON v. 1.0.2; FALCON-Unzip v. 1.0.2; purge_haplotigs v. bitbucket 7.10.2018; scaff10x v. git 4.28.2018; Bionano Solve DLS v. 3.2.1; Salsa2 HiC v. 2.0; Arrow polishing and gap filling v. 5.1.0.26412; longranger align v. 2.2.2; freebayes v. 1.2.0; gEVAL manual curation v. 2019-10-25; VGP standard assembly pipeline v. 1.5; Additional Purge_dup and Polish v. 2020-05-28 Assembly Name :: mBalMus1.pri.v3 Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 51.16x Sequencing Technology :: PacBio Sequel I; Illumina NovaSeq; 10X Genomics chromium; Dovetail Genomics HiC ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..106 /organism="Balaenoptera musculus" /mol_type="genomic DNA" /isolate="JJ_BM4_2016_0621" /db_xref="taxon:9771" /sex="male" /cell_type="Fibroblast" /tissue_type="Epidermis and Blubber" /country="Pacific Ocean: Santa Barbara" /lat_lon="34.41938 N 119.69905 W" /collection_date="2016" /collected_by="Jeff K. Jacobsen, Susanne Meyer, Li-Fang Chu, Jessica Antosiewicz-Bourget" WGS VNFC03000001-VNFC03000106 WGS_SCAFLD CM018075 WGS_SCAFLD CM020941-CM020963 // LOCUS JACEWE010000000 176 rc DNA linear VRT 02-OCT-2020 DEFINITION Sylvia borin isolate bSylBor1, whole genome shotgun sequencing project. ACCESSION JACEWE000000000 VERSION JACEWE000000000.1 DBLINK BioProject: PRJNA561945 BioSample: SAMN12618613 KEYWORDS WGS. SOURCE Sylvia borin (garden warbler) ORGANISM Sylvia borin Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Sylviidae; Sylviinae; Sylvia. REFERENCE 1 (bases 1 to 176) AUTHORS Fusani,L., Elbers,J.P., Fuselli,S., Slezacek,J., Caswara,C., Formenti,G., Mountcastle,J., Haase,B., Balacco,J., Tracey,A., Wood,J., Howe,K., Fedrigo,O., Smith,S. and Jarvis,E.D. TITLE Sylvia borin (Garden warbler) genome, bSylBor1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 176) AUTHORS Fusani,L., Elbers,J.P., Fuselli,S., Slezacek,J., Caswara,C., Formenti,G., Mountcastle,J., Haase,B., Balacco,J., Tracey,A., Wood,J., Howe,K., Fedrigo,O., Smith,S. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (09-JUN-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Sylvia borin whole genome shotgun (WGS) project has the project accession JACEWE000000000. This version of the project (01) has the accession number JACEWE010000000, and consists of sequences JACEWE010000001-JACEWE010000176. This assembly represents the principal haplotype of the diploid genome Sylvia borin and includes the chromosomes. The alternate haplotype sequences are in WGS project JACEWF000000000. ##Genome-Assembly-Data-START## Assembly Date :: 24-APR-2020 Assembly Method :: FALCON v. DX 2.0.0; FALCON-Unzip v. DX 1.1.0; purge_dups v. DX 19-08-10; scaff10X v. DX 2.0.3; bionano Solve v. DX 3.4.0; Salsa2 HiC v. DX 2.2.0; Arrow polishing and gap filling v. DX 7.0.1.1; Longranger Align v. DX 2.2.2.1; freebayes v. DX 19-07-11; gEVAL manual curation v. 2020-04-24; VGP assembly pipeline v. 1.6 Assembly Name :: bSylBor1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 72.07x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..176 /organism="Sylvia borin" /mol_type="genomic DNA" /isolate="bSylBor1" /db_xref="taxon:73324" /sex="male" /tissue_type="isolated red blood cells" /dev_stage="adult" /country="Italy: Ponza Island" /lat_lon="40.9293 N 12.949173 E" /collection_date="05-Jun-2018" /collected_by="Julia Slezacek" WGS JACEWE010000001-JACEWE010000176 WGS_SCAFLD CM025957-CM025993 // LOCUS JABWDS010000000 33 rc DNA linear VRT 02-OCT-2020 DEFINITION Anableps anableps isolate fAnaAna1, whole genome shotgun sequencing project. ACCESSION JABWDS000000000 VERSION JABWDS000000000.1 DBLINK BioProject: PRJNA561985 BioSample: SAMN12623628 KEYWORDS WGS. SOURCE Anableps anableps (largescale foureyes) ORGANISM Anableps anableps Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Anablepidae; Anablepinae; Anableps. REFERENCE 1 (bases 1 to 33) AUTHORS Myers,G., Pippel,M., Whibley,A., Formenti,G., Winkler,S., Fedrigo,O., Tracey,A., Sims,Y., Howe,K., Torres-Dowdall,J., Meyer,A., Durbin,R. and Jarvis,E.D. TITLE Anableps anableps (Largescale four-eyed fish) genome, fAnaAna1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 33) AUTHORS Myers,G., Pippel,M., Whibley,A., Formenti,G., Winkler,S., Fedrigo,O., Tracey,A., Sims,Y., Howe,K., Torres-Dowdall,J., Meyer,A., Durbin,R. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (08-JUN-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Anableps anableps whole genome shotgun (WGS) project has the project accession JABWDS000000000. This version of the project (01) has the accession number JABWDS010000000, and consists of sequences JABWDS010000001-JABWDS010000033. This assembly represents the principal haplotype of the diploid genome Anableps anableps and includes the chromosomes. The alternate haplotype sequences are in WGS project JABWDT000000000. ##Genome-Assembly-Data-START## Assembly Date :: 14-MAY-2020 Assembly Method :: FALCON v. DX 2.0.0; FALCON-Unzip v. DX 1.1.0; purge_dups v. DX 19-08-10; scaff10X v. DX 2.0.3; bionano Solve v. DX 3.4.0; Salsa2 HiC v. DX 2.2.0; Arrow polishing and gap filling v. DX 7.0.1.1; Longranger Align v. DX 2.2.2.1; freebayes v. DX 19-07-11; gEVAL manual curation v. 2020-05-14; VGP assembly pipeline v. 1.6 Assembly Name :: fAnaAna1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 58.8x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..33 /organism="Anableps anableps" /mol_type="genomic DNA" /isolate="fAnaAna1" /db_xref="taxon:195821" /sex="male" /tissue_type="liver, spleen" /dev_stage="adult" /country="Germany: Wilhelma Zoo, Stuttgart" /lat_lon="48.7758459 N 9.1829321 E" /collection_date="11-Jul-2017" /collected_by="Andreas Kaut" WGS JABWDS010000001-JABWDS010000033 WGS_SCAFLD CM026065-CM026089 // LOCUS JABWDQ010000000 410 rc DNA linear VRT 02-OCT-2020 DEFINITION Xenentodon cancila isolate fXenCan1, whole genome shotgun sequencing project. ACCESSION JABWDQ000000000 VERSION JABWDQ000000000.1 DBLINK BioProject: PRJNA561973 BioSample: SAMN12623622 KEYWORDS WGS. SOURCE Xenentodon cancila (freshwater garfish) ORGANISM Xenentodon cancila Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Belonidae; Xenentodon. REFERENCE 1 (bases 1 to 410) AUTHORS Myers,G., Pippel,M., Haase,B., Formenti,G., Winkler,S., Fedrigo,O., Tracey,A., Wood,J., Howe,K., Schneider,R., Meyer,A., Durbin,R. and Jarvis,E.D. TITLE Xenentodon cancila (Needlefish) genome, fXenCan1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 410) AUTHORS Myers,G., Pippel,M., Haase,B., Formenti,G., Winkler,S., Fedrigo,O., Tracey,A., Wood,J., Howe,K., Schneider,R., Meyer,A., Durbin,R. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (08-JUN-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Xenentodon cancila whole genome shotgun (WGS) project has the project accession JABWDQ000000000. This version of the project (01) has the accession number JABWDQ010000000, and consists of sequences JABWDQ010000001-JABWDQ010000410. This assembly represents the principal haplotype of the diploid genome Xenentodon cancila and includes the chromosomes. The alternate haplotype sequences are in WGS project JABWDR000000000. ##Genome-Assembly-Data-START## Assembly Date :: 24-APR-2020 Assembly Method :: FALCON v. DX 2.0.0; FALCON-Unzip v. DX 1.1.0; purge_dups v. DX 19-08-10; scaff10X v. DX 2.0.3; bionano Solve v. DX 3.4.0; Salsa2 HiC v. DX 2.2.0; Arrow polishing and gap filling v. DX 7.0.1.1; Longranger Align v. DX 2.2.2.1; freebayes v. DX 19-07-11; gEVAL manual curation v. 2020-04-24; VGP assembly pipeline v. 1.6 Assembly Name :: fXenCan1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 62.8x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..410 /organism="Xenentodon cancila" /mol_type="genomic DNA" /isolate="fXenCan1" /db_xref="taxon:129108" /sex="male" /tissue_type="liver, muscle" /dev_stage="adult" /country="Netherlands: Dejong Marinelife, Rotterdam" /lat_lon="51.9244201 N 4.4777325 E" /collection_date="11-Jul-2017" /collected_by="Andreas Kaut" WGS JABWDQ010000001-JABWDQ010000410 WGS_SCAFLD CM026197-CM026221 // LOCUS JACNMV010000000 181 rc DNA linear VRT 02-OCT-2020 DEFINITION Dryobates pubescens isolate bDryPub1, whole genome shotgun sequencing project. ACCESSION JACNMV000000000 VERSION JACNMV000000000.1 DBLINK BioProject: PRJNA561991 BioSample: SAMN12629497 KEYWORDS WGS. SOURCE Dryobates pubescens (Downy woodpecker) ORGANISM Dryobates pubescens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Piciformes; Picidae; Dryobates. REFERENCE 1 (bases 1 to 181) AUTHORS Fuxjager,M., Schuppe,E., Haase,B., Balacco,J., Mountcastle,J., Chow,W., Pelan,S., Formenti,G., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Dryobates pubescens (Downy Woodpecker) genome, bDryPub1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 181) AUTHORS Fuxjager,M., Schuppe,E., Haase,B., Balacco,J., Mountcastle,J., Chow,W., Pelan,S., Formenti,G., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (17-AUG-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Dryobates pubescens whole genome shotgun (WGS) project has the project accession JACNMV000000000. This version of the project (01) has the accession number JACNMV010000000, and consists of sequences JACNMV010000001-JACNMV010000181. This assembly represents the principal haplotype of the diploid genome Picoides pubescens and includes the chromosomes. The alternate haplotype sequences are in WGS project JACNMW000000000. ##Genome-Assembly-Data-START## Assembly Date :: 16-JUL-2020 Assembly Method :: FALCON v. 1.3.0 2018.31.08-03.06; FALCON-Unzip v. 1.2.0 6.0.0.47841; purge_dups v. github ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b; Scaff10x v. 4.1.0; Bionano Solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow polishing and gap filling v. SMRTLink7.0.1; Longranger Align v. 2.2.2; freebayes v. 1.3.1; gEVAL manual curation v. 2020-07-16; VGP assembly pipeline v. 1.6 Assembly Name :: bDryPub1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 62.43x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..181 /organism="Dryobates pubescens" /mol_type="genomic DNA" /isolate="bDryPub1" /db_xref="taxon:118200" /sex="female" /tissue_type="blood" /dev_stage="adult" /country="USA: North Carolina" /lat_lon="36.13054 N 80.2563 W" /collection_date="02-Apr-2019" /collected_by="Matt Fuxjager, Eric Schuppe" WGS JACNMV010000001-JACNMV010000181 WGS_SCAFLD CM025994-CM026040 // LOCUS VNFD02000000 10996 rc DNA linear MAM 30-SEP-2020 DEFINITION Balaenoptera musculus isolate JJ_BM4_2016_0621, whole genome shotgun sequencing project. ACCESSION VNFD00000000 VERSION VNFD00000000.2 DBLINK BioProject: PRJNA554523 BioSample: SAMN12287136 KEYWORDS WGS. SOURCE Balaenoptera musculus (Blue whale) ORGANISM Balaenoptera musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Mysticeti; Balaenopteridae; Balaenoptera. REFERENCE 1 (bases 1 to 10996) AUTHORS Bukhman,Y.V., Chu,L.-F., Meyer,S., Rhie,A., Wood,J., Jacobsen,J.K., Antosiewicz-Bourget,J., Argus,C., Bolin,J., Jiang,P., Mamott,D., Swanson,S.A., Morin,P.A., Formenti,G., Phillippy,A., Howe,K., Fedrigo,O., Jarvis,E.D., Thomson,J.A. and Stewart,R. TITLE Balaenoptera musculus (blue whale) genome, mBalMus1.3, alternate haplotype v3 JOURNAL Unpublished REFERENCE 2 (bases 1 to 10996) AUTHORS Bukhman,Y.V., Chu,L.-F., Meyer,S., Rhie,A., Wood,J., Jacobsen,J.K., Antosiewicz-Bourget,J., Argus,C., Bolin,J., Jiang,P., Mamott,D., Swanson,S.A., Morin,P.A., Formenti,G., Phillippy,A., Howe,K., Fedrigo,O., Jarvis,E., Thomson,J.A. and Stewart,R. TITLE Direct Submission JOURNAL Submitted (19-JUL-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA REFERENCE 3 (bases 1 to 10996) AUTHORS Bukhman,Y.V., Chu,L.-F., Meyer,S., Rhie,A., Wood,J., Jacobsen,J.K., Antosiewicz-Bourget,J., Argus,C., Bolin,J., Jiang,P., Mamott,D., Swanson,S.A., Morin,P.A., Formenti,G., Phillippy,A., Howe,K., Fedrigo,O., Jarvis,E.D., Thomson,J.A. and Stewart,R. TITLE Direct Submission JOURNAL Submitted (17-AUG-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT On Sep 30, 2020 this sequence version replaced VNFD00000000.1. The Balaenoptera musculus whole genome shotgun (WGS) project has the project accession VNFD00000000. This version of the project (02) has the accession number VNFD02000000, and consists of sequences VNFD02000001-VNFD02010996. This assembly represents the alternate haplotype of the diploid genome Balaenoptera musculus. The principal haplotype sequences are in WGS project VNFC00000000. ##Genome-Assembly-Data-START## Assembly Date :: 25-OCT-2019 Assembly Method :: FALCON v. 1.0.2; FALCON-Unzip v. 1.0.2; purge_haplotigs v. bitbucket 7.10.2018; scaff10x v. git 4.28.2018; Bionano Solve DLS v. 3.2.1; Salsa2 HiC v. 2.0; Arrow polishing and gap filling v. 5.1.0.26412; longranger align v. 2.2.2; freebayes v. 1.2.0; gEVAL manual curation v. 2019-10-25; VGP standard assembly pipeline v. 1.5; Additional Purge_dup and Polish v. 2020-05-28 Assembly Name :: mBalMus1.alt.v2 Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 51.16x Sequencing Technology :: PacBio Sequel I; Illumina NovaSeq; 10X Genomics chromium; Dovetail Genomics HiC ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..10996 /organism="Balaenoptera musculus" /mol_type="genomic DNA" /isolate="JJ_BM4_2016_0621" /db_xref="taxon:9771" /sex="male" /cell_type="Fibroblast" /tissue_type="Epidermis and Blubber" /country="Pacific Ocean: Santa Barbara" /lat_lon="34.41938 N 119.69905 W" /collection_date="2016" /collected_by="Jeff K. Jacobsen, Susanne Meyer, Li-Fang Chu, Jessica Antosiewicz-Bourget" WGS VNFD02000001-VNFD02010996 // LOCUS JACEWF010000000 775 rc DNA linear VRT 30-SEP-2020 DEFINITION Sylvia borin isolate bSylBor1, whole genome shotgun sequencing project. ACCESSION JACEWF000000000 VERSION JACEWF000000000.1 DBLINK BioProject: PRJNA561946 BioSample: SAMN12618613 KEYWORDS WGS. SOURCE Sylvia borin (garden warbler) ORGANISM Sylvia borin Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Sylviidae; Sylviinae; Sylvia. REFERENCE 1 (bases 1 to 775) AUTHORS Fusani,L., Elbers,J.P., Fuselli,S., Slezacek,J., Caswara,C., Formenti,G., Mountcastle,J., Haase,B., Balacco,J., Tracey,A., Wood,J., Howe,K., Fedrigo,O., Smith,S. and Jarvis,E.D. TITLE Sylvia borin (Garden warbler) genome, bSylBor1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 775) AUTHORS Fusani,L., Elbers,J.P., Fuselli,S., Slezacek,J., Caswara,C., Formenti,G., Mountcastle,J., Haase,B., Balacco,J., Tracey,A., Wood,J., Howe,K., Fedrigo,O., Smith,S. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (09-JUN-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Sylvia borin whole genome shotgun (WGS) project has the project accession JACEWF000000000. This version of the project (01) has the accession number JACEWF010000000, and consists of sequences JACEWF010000001-JACEWF010000775. This assembly represents the alternate haplotype of the diploid genome Sylvia borin. The principal haplotype sequences are in WGS project JACEWE000000000. ##Genome-Assembly-Data-START## Assembly Date :: 24-APR-2020 Assembly Method :: FALCON v. DX 2.0.0; FALCON-Unzip v. DX 1.1.0; purge_dups v. DX 19-08-10; scaff10X v. DX 2.0.3; bionano Solve v. DX 3.4.0; Salsa2 HiC v. DX 2.2.0; Arrow polishing and gap filling v. DX 7.0.1.1; Longranger Align v. DX 2.2.2.1; freebayes v. DX 19-07-11; gEVAL manual curation v. 2020-04-24; VGP assembly pipeline v. 1.6 Assembly Name :: bSylBor1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 72.07x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..775 /organism="Sylvia borin" /mol_type="genomic DNA" /isolate="bSylBor1" /db_xref="taxon:73324" /sex="male" /tissue_type="isolated red blood cells" /dev_stage="adult" /country="Italy: Ponza Island" /lat_lon="40.9293 N 12.949173 E" /collection_date="05-Jun-2018" /collected_by="Julia Slezacek" WGS JACEWF010000001-JACEWF010000775 // LOCUS JABWDT010000000 5088 rc DNA linear VRT 30-SEP-2020 DEFINITION Anableps anableps isolate fAnaAna1, whole genome shotgun sequencing project. ACCESSION JABWDT000000000 VERSION JABWDT000000000.1 DBLINK BioProject: PRJNA561986 BioSample: SAMN12623628 KEYWORDS WGS. SOURCE Anableps anableps (largescale foureyes) ORGANISM Anableps anableps Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Anablepidae; Anablepinae; Anableps. REFERENCE 1 (bases 1 to 5088) AUTHORS Myers,G., Pippel,M., Whibley,A., Formenti,G., Winkler,S., Fedrigo,O., Tracey,A., Sims,Y., Howe,K., Torres-Dowdall,J., Meyer,A., Durbin,R. and Jarvis,E.D. TITLE Anableps anableps (Largescale four-eyed fish) genome, fAnaAna1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 5088) AUTHORS Myers,G., Pippel,M., Whibley,A., Formenti,G., Winkler,S., Fedrigo,O., Tracey,A., Sims,Y., Howe,K., Torres-Dowdall,J., Meyer,A., Durbin,R. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (08-JUN-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Anableps anableps whole genome shotgun (WGS) project has the project accession JABWDT000000000. This version of the project (01) has the accession number JABWDT010000000, and consists of sequences JABWDT010000001-JABWDT010005088. This assembly represents the alternate haplotype of the diploid genome Anableps anableps. The principal haplotype sequences are in WGS project JABWDS000000000. ##Genome-Assembly-Data-START## Assembly Date :: 14-MAY-2020 Assembly Method :: FALCON v. DX 2.0.0; FALCON-Unzip v. DX 1.1.0; purge_dups v. DX 19-08-10; scaff10X v. DX 2.0.3; bionano Solve v. DX 3.4.0; Salsa2 HiC v. DX 2.2.0; Arrow polishing and gap filling v. DX 7.0.1.1; Longranger Align v. DX 2.2.2.1; freebayes v. DX 19-07-11; gEVAL manual curation v. 2020-05-14; VGP assembly pipeline v. 1.6 Assembly Name :: fAnaAna1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 58.8x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..5088 /organism="Anableps anableps" /mol_type="genomic DNA" /isolate="fAnaAna1" /db_xref="taxon:195821" /sex="male" /tissue_type="liver, spleen" /dev_stage="adult" /country="Germany: Wilhelma Zoo, Stuttgart" /lat_lon="48.7758459 N 9.1829321 E" /collection_date="11-Jul-2017" /collected_by="Andreas Kaut" WGS JABWDT010000001-JABWDT010005088 // LOCUS JABWDR010000000 5169 rc DNA linear VRT 30-SEP-2020 DEFINITION Xenentodon cancila isolate fXenCan1, whole genome shotgun sequencing project. ACCESSION JABWDR000000000 VERSION JABWDR000000000.1 DBLINK BioProject: PRJNA561974 BioSample: SAMN12623622 KEYWORDS WGS. SOURCE Xenentodon cancila (freshwater garfish) ORGANISM Xenentodon cancila Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Belonidae; Xenentodon. REFERENCE 1 (bases 1 to 5169) AUTHORS Myers,G., Pippel,M., Haase,B., Formenti,G., Winkler,S., Fedrigo,O., Tracey,A., Wood,J., Howe,K., Schneider,R., Meyer,A., Durbin,R. and Jarvis,E.D. TITLE Xenentodon cancila (Needlefish) genome, fXenCan1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 5169) AUTHORS Myers,G., Pippel,M., Haase,B., Formenti,G., Winkler,S., Fedrigo,O., Tracey,A., Wood,J., Howe,K., Schneider,R., Meyer,A., Durbin,R. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (08-JUN-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Xenentodon cancila whole genome shotgun (WGS) project has the project accession JABWDR000000000. This version of the project (01) has the accession number JABWDR010000000, and consists of sequences JABWDR010000001-JABWDR010005169. This assembly represents the alternate haplotype of the diploid genome Xenentodon cancila. The principal haplotype sequences are in WGS project JABWDQ000000000. ##Genome-Assembly-Data-START## Assembly Date :: 24-APR-2020 Assembly Method :: FALCON v. DX 2.0.0; FALCON-Unzip v. DX 1.1.0; purge_dups v. DX 19-08-10; scaff10X v. DX 2.0.3; bionano Solve v. DX 3.4.0; Salsa2 HiC v. DX 2.2.0; Arrow polishing and gap filling v. DX 7.0.1.1; Longranger Align v. DX 2.2.2.1; freebayes v. DX 19-07-11; gEVAL manual curation v. 2020-04-24; VGP assembly pipeline v. 1.6 Assembly Name :: fXenCan1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 62.8x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..5169 /organism="Xenentodon cancila" /mol_type="genomic DNA" /isolate="fXenCan1" /db_xref="taxon:129108" /sex="male" /tissue_type="liver, muscle" /dev_stage="adult" /country="Netherlands: Dejong Marinelife, Rotterdam" /lat_lon="51.9244201 N 4.4777325 E" /collection_date="11-Jul-2017" /collected_by="Andreas Kaut" WGS JABWDR010000001-JABWDR010005169 // LOCUS JACNMW010000000 1342 rc DNA linear VRT 30-SEP-2020 DEFINITION Dryobates pubescens isolate bDryPub1, whole genome shotgun sequencing project. ACCESSION JACNMW000000000 VERSION JACNMW000000000.1 DBLINK BioProject: PRJNA561992 BioSample: SAMN12629497 KEYWORDS WGS. SOURCE Dryobates pubescens (Downy woodpecker) ORGANISM Dryobates pubescens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Piciformes; Picidae; Dryobates. REFERENCE 1 (bases 1 to 1342) AUTHORS Fuxjager,M., Schuppe,E., Haase,B., Balacco,J., Mountcastle,J., Chow,W., Pelan,S., Formenti,G., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Dryobates pubescens (Downy Woodpecker) genome, bDryPub1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 1342) AUTHORS Fuxjager,M., Schuppe,E., Haase,B., Balacco,J., Mountcastle,J., Chow,W., Pelan,S., Formenti,G., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (17-AUG-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Dryobates pubescens whole genome shotgun (WGS) project has the project accession JACNMW000000000. This version of the project (01) has the accession number JACNMW010000000, and consists of sequences JACNMW010000001-JACNMW010001342. This assembly represents the alternate haplotype of the diploid genome Picoides pubescens. The principal haplotype sequences are in WGS project JACNMV000000000. ##Genome-Assembly-Data-START## Assembly Date :: 16-JUL-2020 Assembly Method :: FALCON v. 1.3.0 2018.31.08-03.06; FALCON-Unzip v. 1.2.0 6.0.0.47841; purge_dups v. github ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b; Scaff10x v. 4.1.0; Bionano Solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow polishing and gap filling v. SMRTLink7.0.1; Longranger Align v. 2.2.2; freebayes v. 1.3.1; gEVAL manual curation v. 2020-07-16; GP assembly pipeline v. 1.6 Assembly Name :: bDryPub1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 62.43x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1342 /organism="Dryobates pubescens" /mol_type="genomic DNA" /isolate="bDryPub1" /db_xref="taxon:118200" /sex="female" /tissue_type="blood" /dev_stage="adult" /country="USA: North Carolina" /lat_lon="36.13054 N 80.2563 W" /collection_date="02-Apr-2019" /collected_by="Matt Fuxjager, Eric Schuppe" WGS JACNMW010000001-JACNMW010001342 // LOCUS CAAAFW030000000 48 rc DNA linear VRT 23-AUG-2020 DEFINITION Betta splendens, whole genome shotgun sequencing project. ACCESSION CAAAFW000000000 VERSION CAAAFW000000000.3 DBLINK BioProject: PRJEB30365 BioSample: SAMEA104381735 KEYWORDS WGS. SOURCE Betta splendens (Siamese fighting fish) ORGANISM Betta splendens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Anabantiformes; Anabantoidei; Osphronemidae; Betta. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (14-DEC-2018) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 48) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (19-AUG-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT On Aug 23, 2020 this sequence version replaced CAAAFW000000000.2. The Betta splendens whole genome shotgun (WGS) project has the project accession CAAAFW000000000. This version of the project (03) has the accession number CAAAFW030000000, and consists of sequences CAAAFW030000001-CAAAFW030000048. The assembly fBetSpl5.2 is based on 48x PacBio Sequel data and 83x coverage Illumina HiSeqX data from a single individual (fBetSpl5, sample SAMEA104381735). Scaffolding and curation also integrated 183x Illumina HiSeqX data generated from a 10X Genomics Chromium library and single-enzyme BioNano Irys data, both from a separate individual (fBetSpl1, sample SAMEA104381745). All data was generated at the Wellcome Sanger Institute. An initial PacBio assembly of fBetSpl5 was made using Falcon-unzip, and retained haplotigs were identified using purge_haplotigs. The primary contigs were then scaffolded using the 10X data from fBetSpl1 with scaff10x. After using the PacBio data to gap fill with PBJelly and polish with Arrow, the assembly was polished again using the fBetSpl5 Illumina data and freebayes. Finally, the assembly was manually improved using gEVAL to correct mis-joins and improve concordance with the BioNano data. By aligning with the existing Betta splendens assembly (GCA_003650155.1) and medaka, we were able to order and orient our scaffolds and place onto chromosomes. Chromosomes are named by synteny to medaka. FEATURES Location/Qualifiers source 1..48 /organism="Betta splendens" /mol_type="genomic DNA" /db_xref="taxon:158456" WGS CAAAFW030000001-CAAAFW030000048 // LOCUS CAJFAA010000000 2925 rc DNA linear ROD 18-AUG-2020 DEFINITION Onychomys torridus, whole genome shotgun sequencing project. ACCESSION CAJFAA000000000 VERSION CAJFAA000000000.1 DBLINK BioProject: PRJEB39770 BioSample: SAMEA104026389 KEYWORDS WGS. SOURCE Onychomys torridus (southern grasshopper mouse) ORGANISM Onychomys torridus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Onychomys. REFERENCE 1 (bases 1 to 2925) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (07-AUG-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Onychomys torridus whole genome shotgun (WGS) project has the project accession CAJFAA000000000. This version of the project (01) has the accession number CAJFAA010000000, and consists of sequences CAJFAA010000001-CAJFAA010002925. The assembly mOncTor1.1 is based on 59x PacBio data, 77x 10X Genomics Chromium data, and BioNano data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon and an separate initial assembly with miniasm, scaffolding of the Falcon contigs using the miniasm assembly as a guide with cross_genome, scaffolding with scaff10x, contig breaking with break10x, gap filling with PBJelly, polishing using Arrow, polishing using Illumina data with Freebayes, and manual curation, including use of synteny with assembly GCA_003704035.1 of Peromyscus maniculatus bairdii. Chromosome-scale scaffolds are based on chromosome painting with Mus musculus fosmids. Autosomes are named in order of longer arm length. FEATURES Location/Qualifiers source 1..2925 /organism="Onychomys torridus" /mol_type="genomic DNA" /db_xref="taxon:38674" WGS CAJFAA010000001-CAJFAA010002925 // LOCUS JABXFI020000000 726 rc DNA linear INV 14-AUG-2020 DEFINITION Monomorium pharaonis isolate MP-MQ-018, whole genome shotgun sequencing project. ACCESSION JABXFI000000000 VERSION JABXFI000000000.2 DBLINK BioProject: PRJNA634441 BioSample: SAMN15097795 KEYWORDS WGS. SOURCE Monomorium pharaonis (pharaoh ant) ORGANISM Monomorium pharaonis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Myrmicinae; Monomorium. REFERENCE 1 (bases 1 to 726) AUTHORS Gao,Q., Xiong,Z., Larsen,R.S., Zhou,L., Zhao,J., Ding,G., Zhao,R. and Zhang,G. TITLE A high-quality chromosome-level pharaoh ant genome assembly and full-length transcriptome provide insights on ant caste differentiation JOURNAL Unpublished REFERENCE 2 (bases 1 to 726) AUTHORS Xiong,Z., Gao,Q. and Zhang,G. TITLE Direct Submission JOURNAL Submitted (18-JUN-2020) CNGB, BGI, 11 Beishan Road, Yantian, Shenzhen, Guangdong 518000, China REFERENCE 3 (bases 1 to 726) AUTHORS Gao,Q., Xiong,Z., Larsen,R.S., Zhou,L., Zhao,J., Ding,G., Zhao,R. and Zhang,G. TITLE Direct Submission JOURNAL Submitted (15-JUL-2020) CNGB, BGI, Yantian Beishan Road 11 Building, Shenzhen, Guangdong 518000, China COMMENT On Aug 13, 2020 this sequence version replaced JABXFI000000000.1. The Monomorium pharaonis whole genome shotgun (WGS) project has the project accession JABXFI000000000. This version of the project (02) has the accession number JABXFI020000000, and consists of sequences JABXFI020000001-JABXFI020000726. ##Genome-Assembly-Data-START## Assembly Method :: Canu v. 1.5; 3D-DNA v. 180922 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 96.0x Sequencing Technology :: PacBio Sequel ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..726 /organism="Monomorium pharaonis" /mol_type="genomic DNA" /isolate="MP-MQ-018" /db_xref="taxon:307658" /sex="female" /tissue_type="whole body" /dev_stage="adult" WGS JABXFI020000001-JABXFI020000726 WGS_SCAFLD CM023794-CM023805 // LOCUS CAJFAB010000000 590 rc DNA linear ROD 12-AUG-2020 DEFINITION Acomys russatus, whole genome shotgun sequencing project. ACCESSION CAJFAB000000000 VERSION CAJFAB000000000.1 DBLINK BioProject: PRJEB39768 BioSample: SAMEA104026431 KEYWORDS WGS. SOURCE Acomys russatus (golden spiny mouse) ORGANISM Acomys russatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Deomyinae; Acomys. REFERENCE 1 (bases 1 to 590) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (07-AUG-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Acomys russatus whole genome shotgun (WGS) project has the project accession CAJFAB000000000. This version of the project (01) has the accession number CAJFAB010000000, and consists of sequences CAJFAB010000001-CAJFAB010000590. The assembly mAcoRus1.1 is based on 58x PacBio data and BioNano data generated at the Wellcome Sanger Institute, and 33x Illumina data generated at the Earlham Institute. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, BioNano hybrid-scaffolding, gap filling with PBJelly, polishing using Arrow, polishing using Illumina data with Freebayes, and manual curation. Chromosome-scale scaffolds are built based on chromosome painting with Mus musculus fosmids, karyotype named as previously published (Baker et. al, 1979). FEATURES Location/Qualifiers source 1..590 /organism="Acomys russatus" /mol_type="genomic DNA" /db_xref="taxon:60746" WGS CAJFAB010000001-CAJFAB010000590 // LOCUS JACASE010000000 30 rc DNA linear MAM 13-AUG-2020 DEFINITION Rousettus aegyptiacus isolate mRouAeg1, whole genome shotgun sequencing project. ACCESSION JACASE000000000 VERSION JACASE000000000.1 DBLINK BioProject: PRJNA628585 BioSample: SAMN14734550 KEYWORDS WGS. SOURCE Rousettus aegyptiacus (Egyptian rousette) ORGANISM Rousettus aegyptiacus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Megachiroptera; Pteropodidae; Pteropodinae; Rousettus. REFERENCE 1 (bases 1 to 30) AUTHORS Jebb,D., Huang,Z., Pippel,M., Hughes,G.M., Lavrichenko,K., Devanna,P., Winkler,S., Jermiin,L.S., Skirmuntt,E.C., Katzourakis,A., Burkitt-Gray,L., Ray,D.A., Sullivan,K.A.M., Roscito,J.G., Kirilenko,B.M., Davalos,L.M., Corthals,A.P., Power,M.L., Jones,G., Ransome,R.D., Dechmann,D.K.N., Locatelli,A.G., Puechmaille,S.J., Fedrigo,O., Jarvis,E.D., Hiller,M., Vernes,S.C., Myers,E.W. and Teeling,E.C. TITLE Six reference-quality genomes reveal evolution of bat adaptations JOURNAL Nature 583 (7817), 578-584 (2020) PUBMED 32699395 REFERENCE 2 (bases 1 to 30) AUTHORS Pippel,M., Jebb,D., Huang,Z., Huges,G., Lavrichenko,K., Devanna,P., Winkler,S., Ray,D., Davalos,L., Hiller,M., Vernes,S., Myers,E. and Teeling,E. TITLE Direct Submission JOURNAL Submitted (18-JUN-2020) Center for Systems Biology, Bat1K, Pfotenhauerstrasse 108, Dresden 01307, Germany COMMENT The Rousettus aegyptiacus whole genome shotgun (WGS) project has the project accession JACASE000000000. This version of the project (01) has the accession number JACASE010000000, and consists of sequences JACASE010000001-JACASE010000030. ##Genome-Assembly-Data-START## Assembly Date :: 27-APR-2019 Assembly Method :: DAmar v. APRIL-2019; Bionano Solve DLS v. 3.3; Salsa2 HiC v. git commit: e3ae7d8; GenomicConsensus v. git commit: 038de5c; longranger align v. 2.2.0; Freebayes v. 1.2.0; HiGlass manual curation v. 1.5 Assembly Name :: mRouAeg1.p Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 64.6x Sequencing Technology :: PacBio Sequel CLR; 10X Genomics chromium linked reads; Bionano Genomics; Arima Genomics Hi-C kit; PacBio Sequel IsoSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..30 /organism="Rousettus aegyptiacus" /mol_type="genomic DNA" /isolate="mRouAeg1" /db_xref="taxon:9407" /sex="male" /tissue_type="muscle" /dev_stage="adult" /country="USA: Berkeley (captive colony)" /collection_date="2017" /collected_by="Sonja Vernes" WGS JACASE010000001-JACASE010000030 WGS_SCAFLD CM024382 // LOCUS JACASF010000000 61 rc DNA linear MAM 13-AUG-2020 DEFINITION Molossus molossus isolate mMolMol1, whole genome shotgun sequencing project. ACCESSION JACASF000000000 VERSION JACASF000000000.1 DBLINK BioProject: PRJNA628574 BioSample: SAMN14734448 KEYWORDS WGS. SOURCE Molossus molossus (Pallas's mastiff bat) ORGANISM Molossus molossus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Molossidae; Molossus. REFERENCE 1 (bases 1 to 61) AUTHORS Jebb,D., Huang,Z., Pippel,M., Hughes,G.M., Lavrichenko,K., Devanna,P., Winkler,S., Jermiin,L.S., Skirmuntt,E.C., Katzourakis,A., Burkitt-Gray,L., Ray,D.A., Sullivan,K.A.M., Roscito,J.G., Kirilenko,B.M., Davalos,L.M., Corthals,A.P., Power,M.L., Jones,G., Ransome,R.D., Dechmann,D.K.N., Locatelli,A.G., Puechmaille,S.J., Fedrigo,O., Jarvis,E.D., Hiller,M., Vernes,S.C., Myers,E.W. and Teeling,E.C. TITLE Six reference-quality genomes reveal evolution of bat adaptations JOURNAL Nature 583 (7817), 578-584 (2020) PUBMED 32699395 REFERENCE 2 (bases 1 to 61) AUTHORS Pippel,M., Jebb,D., Huang,Z., Huges,G., Lavrichenko,K., Devanna,P., Winkler,S., Ray,D., Davalos,L., Hiller,M., Vernes,S., Myers,E., Teeling,E. and Dechmann,D. TITLE Direct Submission JOURNAL Submitted (18-JUN-2020) Center for Systems Biology, Bat1K, Pfotenhauerstrasse 108, Dresden 01307, Germany COMMENT The Molossus molossus whole genome shotgun (WGS) project has the project accession JACASF000000000. This version of the project (01) has the accession number JACASF010000000, and consists of sequences JACASF010000001-JACASF010000061. ##Genome-Assembly-Data-START## Assembly Date :: 18-APR-2019 Assembly Method :: DAmar v. APRIL-2019; Bionano Solve DLS v. 3.3; Salsa2 HiC v. git commit: e3ae7d8; GenomicConsensus v. git commit: 038de5c; longranger align v. 2.2.0; Freebayes v. 1.2.0; HiGlass manual curation v. 1.5 Assembly Name :: mMolMol1.p Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 58.3x Sequencing Technology :: PacBio Sequel CLR; 10X Genomics chromium linked reads; Bionano Genomics DLE1; Arima Genomics Hi-C kit; PacBio Sequel IsoSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..61 /organism="Molossus molossus" /mol_type="genomic DNA" /isolate="mMolMol1" /db_xref="taxon:27622" /sex="male" /tissue_type="muscle" /dev_stage="adult" /country="Panama: Gamboa" /lat_lon="9.1165 N 79.6965 W" /collection_date="2018" /collected_by="Dina Dechmann" WGS JACASF010000001-JACASF010000061 WGS_SCAFLD CM024385 // LOCUS JACAGB010000000 203 rc DNA linear MAM 13-AUG-2020 DEFINITION Pipistrellus kuhlii isolate mPipKuh1, whole genome shotgun sequencing project. ACCESSION JACAGB000000000 VERSION JACAGB000000000.1 DBLINK BioProject: PRJNA628567 BioSample: SAMN14734388 KEYWORDS WGS. SOURCE Pipistrellus kuhlii (Kuhl's pipistrelle) ORGANISM Pipistrellus kuhlii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Vespertilionidae; Pipistrellus. REFERENCE 1 (bases 1 to 203) AUTHORS Jebb,D., Huang,Z., Pippel,M., Hughes,G.M., Lavrichenko,K., Devanna,P., Winkler,S., Jermiin,L.S., Skirmuntt,E.C., Katzourakis,A., Burkitt-Gray,L., Ray,D.A., Sullivan,K.A.M., Roscito,J.G., Kirilenko,B.M., Davalos,L.M., Corthals,A.P., Power,M.L., Jones,G., Ransome,R.D., Dechmann,D.K.N., Locatelli,A.G., Puechmaille,S.J., Fedrigo,O., Jarvis,E.D., Hiller,M., Vernes,S.C., Myers,E.W. and Teeling,E.C. TITLE Six reference-quality genomes reveal evolution of bat adaptations JOURNAL Nature 583 (7817), 578-584 (2020) PUBMED 32699395 REFERENCE 2 (bases 1 to 203) AUTHORS Pippel,M., Jebb,D., Huang,Z., Huges,G., Lavrichenko,K., Devanna,P., Winkler,S., Ray,D., Davalos,L., Hiller,M., Vernes,S., Myers,E. and Teeling,E. TITLE Direct Submission JOURNAL Submitted (22-JUN-2020) Center for Systems Biology, Bat1K, Pfotenhauerstrasse 108, Dresden 01307, Germany COMMENT The Pipistrellus kuhlii whole genome shotgun (WGS) project has the project accession JACAGB000000000. This version of the project (01) has the accession number JACAGB010000000, and consists of sequences JACAGB010000001-JACAGB010000203. ##Genome-Assembly-Data-START## Assembly Date :: 16-APR-2019 Assembly Method :: DAmar v. Apr 19; Bionano Solve DLS v. 3.3; Salsa2 HiC v. git commit: e3ae7d8; GenomicConsensus v. git commit: 038de5c; longranger align v. 2.2.0; Freebayes v. 1.2.0; HiGlass manual curation v. 1.5 Assembly Name :: mPipKuh1.p Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 80.8x Sequencing Technology :: PacBio Sequel CLR; 10X Genomics chromium linked reads; Bionano Genomics; Phase Genomics HiC; PacBio Sequel IsoSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..203 /organism="Pipistrellus kuhlii" /mol_type="genomic DNA" /isolate="mPipKuh1" /db_xref="taxon:59472" /sex="male" /tissue_type="flight muscle, heart, brain, liver, kidney" /dev_stage="adult" /country="Italy: Bergamo" /lat_lon="45.7430 N 9.5831 E" /collection_date="2017" /collected_by="Emma Teeling, Andrea Locatelli" WGS JACAGB010000001-JACAGB010000203 WGS_SCAFLD CM024384 // LOCUS JACAGC010000000 50 rc DNA linear MAM 13-AUG-2020 DEFINITION Rhinolophus ferrumequinum isolate mRhiFer1, whole genome shotgun sequencing project. ACCESSION JACAGC000000000 VERSION JACAGC000000000.1 DBLINK BioProject: PRJNA628581 BioSample: SAMN14734547 KEYWORDS WGS. SOURCE Rhinolophus ferrumequinum (greater horseshoe bat) ORGANISM Rhinolophus ferrumequinum Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Rhinolophidae; Rhinolophinae; Rhinolophus. REFERENCE 1 (bases 1 to 50) AUTHORS Jebb,D., Huang,Z., Pippel,M., Hughes,G.M., Lavrichenko,K., Devanna,P., Winkler,S., Jermiin,L.S., Skirmuntt,E.C., Katzourakis,A., Burkitt-Gray,L., Ray,D.A., Sullivan,K.A.M., Roscito,J.G., Kirilenko,B.M., Davalos,L.M., Corthals,A.P., Power,M.L., Jones,G., Ransome,R.D., Dechmann,D.K.N., Locatelli,A.G., Puechmaille,S.J., Fedrigo,O., Jarvis,E.D., Hiller,M., Vernes,S.C., Myers,E.W. and Teeling,E.C. TITLE Six reference-quality genomes reveal evolution of bat adaptations JOURNAL Nature 583 (7817), 578-584 (2020) PUBMED 32699395 REFERENCE 2 (bases 1 to 50) AUTHORS Pippel,M., Jebb,D., Huang,Z., Huges,G., Lavrichenko,K., Devanna,P., Winkler,S., Ray,D., Davalos,L., Hiller,M., Vernes,S., Myers,E., Teeling,E., Jarvis,E. and Fedrigo,O. TITLE Direct Submission JOURNAL Submitted (19-JUN-2020) Center for Systems Biology, Bat1K, Pfotenhauerstrasse 108, Dresden 01307, Germany COMMENT The Rhinolophus ferrumequinum whole genome shotgun (WGS) project has the project accession JACAGC000000000. This version of the project (01) has the accession number JACAGC010000000, and consists of sequences JACAGC010000001-JACAGC010000050. ##Genome-Assembly-Data-START## Assembly Date :: 24-APR-2019 Assembly Method :: DAmar v. APRIL-2019; Bionano Solve BSPQI + BSSSI v. 3.3; Salsa2 HiC v. git commit: e3ae7d8; GenomicConsensus v. git commit: 038de5c; longranger align v. 2.2.0; Freebayes v. 1.2.0; HiGlass manual curation v. 1.5 Assembly Name :: mRhiFer1.p Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 73.3x Sequencing Technology :: PacBio Sequel CLR; 10X Genomics chromium linked reads; Bionano Genomics; Phase Genomics HiC; PacBio Sequel IsoSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..50 /organism="Rhinolophus ferrumequinum" /mol_type="genomic DNA" /isolate="mRhiFer1" /db_xref="taxon:59479" /sex="female" /tissue_type="lung" /dev_stage="adult" /country="United Kingdom" /lat_lon="51.7108 N 2.2776 W" /collection_date="2016" /collected_by="Gareth Jones" WGS JACAGC010000001-JACAGC010000050 WGS_SCAFLD CM024386 // LOCUS JABWUV010000000 93 rc DNA linear MAM 13-AUG-2020 DEFINITION Myotis myotis isolate mMyoMyo1, whole genome shotgun sequencing project. ACCESSION JABWUV000000000 VERSION JABWUV000000000.1 DBLINK BioProject: PRJNA628559 BioSample: SAMN14734277 KEYWORDS WGS. SOURCE Myotis myotis ORGANISM Myotis myotis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Vespertilionidae; Myotis. REFERENCE 1 (bases 1 to 93) AUTHORS Jebb,D., Huang,Z., Pippel,M., Hughes,G.M., Lavrichenko,K., Devanna,P., Winkler,S., Jermiin,L.S., Skirmuntt,E.C., Katzourakis,A., Burkitt-Gray,L., Ray,D.A., Sullivan,K.A.M., Roscito,J.G., Kirilenko,B.M., Davalos,L.M., Corthals,A.P., Power,M.L., Jones,G., Ransome,R.D., Dechmann,D.K.N., Locatelli,A.G., Puechmaille,S.J., Fedrigo,O., Jarvis,E.D., Hiller,M., Vernes,S.C., Myers,E.W. and Teeling,E.C. TITLE Six reference-quality genomes reveal evolution of bat adaptations JOURNAL Nature 583 (7817), 578-584 (2020) PUBMED 32699395 REFERENCE 2 (bases 1 to 93) AUTHORS Pippel,M., Jebb,D., Huang,Z., Huges,G., Lavrichenko,K., Devanna,P., Winkler,S., Ray,D., Davalos,L., Hiller,M., Vernes,S., Myers,E. and Teeling,E. TITLE Direct Submission JOURNAL Submitted (15-JUN-2020) Center for Systems Biology, Bat1K, Pfotenhauerstrasse 108, Dresden 01307, Germany COMMENT The Myotis myotis whole genome shotgun (WGS) project has the project accession JABWUV000000000. This version of the project (01) has the accession number JABWUV010000000, and consists of sequences JABWUV010000001-JABWUV010000093. ##Genome-Assembly-Data-START## Assembly Date :: 16-APR-2019 Assembly Method :: DAmar v. APRIL-2019; Bionano Solve DLS v. 3.3; Salsa2 HiC v. git commit: e3ae7d8; GenomicConsensus v. git commit: 038de5c; longranger align v. 2.2.0; Freebayes v. 1.2.0; HiGlass manual curation v. 1.5 Assembly Name :: mMyoMyo1.p Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 90.9x Sequencing Technology :: PacBio Sequel CLR; 10X Genomics chromium linked reads; Bionano Genomics; Phase Genomics HiC; PacBio Sequel IsoSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..93 /organism="Myotis myotis" /mol_type="genomic DNA" /isolate="mMyoMyo1" /db_xref="taxon:51298" /sex="female" /tissue_type="flight muscle" /dev_stage="adult" /country="France: Limerzel" /lat_lon="47.6333 N 2.3500 W" /collection_date="2015" /collected_by="Emma Teeling, Sebastien Puechmaille" WGS JABWUV010000001-JABWUV010000093 WGS_SCAFLD CM024383 // LOCUS JACHAW010000000 2525 rc DNA linear INV 06-AUG-2020 DEFINITION Vespa mandarinia isolate Nanaimo, whole genome shotgun sequencing project. ACCESSION JACHAW000000000 VERSION JACHAW000000000.1 DBLINK BioProject: PRJNA649643 BioSample: SAMN15675875 KEYWORDS WGS. SOURCE Vespa mandarinia (Asian giant hornet) ORGANISM Vespa mandarinia Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Vespoidea; Vespidae; Vespinae; Vespa. REFERENCE 1 (bases 1 to 2525) AUTHORS Childers,A.K., Geib,S.M., Smith,T.P.L., Foster,L.J., Kauwe,A.N. and Korlach,J. TITLE Vespa mandarinia genome assembly JOURNAL Unpublished REFERENCE 2 (bases 1 to 2525) AUTHORS Childers,A.K., Geib,S.M., Smith,T.P.L., Foster,L.J., Kauwe,A.N. and Korlach,J. TITLE Direct Submission JOURNAL Submitted (03-AUG-2020) Bee Research Laboratory, USDA-ARS, 10300 Baltimore Avenue, Bldg 306 BARC-East, Beltsville, MD 20705, USA COMMENT The Vespa mandarinia whole genome shotgun (WGS) project has the project accession JACHAW000000000. This version of the project (01) has the accession number JACHAW010000000, and consists of sequences JACHAW010000001-JACHAW010002525. ##Genome-Assembly-Data-START## Assembly Date :: JUN-2020 Assembly Method :: IPA v. 1.0.2 Assembly Name :: V.mandarinia_Nanaimo_a1.0 Diploid :: Alternate Pseudohaplotype Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 135x Sequencing Technology :: PacBio Sequel ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..2525 /organism="Vespa mandarinia" /mol_type="genomic DNA" /isolate="Nanaimo" /isolation_source="Nanaimo on Vancouver Island" /db_xref="taxon:7446" /sex="female" /tissue_type="thorax" /dev_stage="worker" /country="Canada: Nanaimo, Vancouver Island, British Columbia" /lat_lon="49.152809 N 123.943125 W" /collection_date="2019-09-18" /collected_by="John Duff" WGS JACHAW010000001-JACHAW010002525 // LOCUS JACHAV010000000 268 rc DNA linear INV 06-AUG-2020 DEFINITION Vespa mandarinia isolate Nanaimo, whole genome shotgun sequencing project. ACCESSION JACHAV000000000 VERSION JACHAV000000000.1 DBLINK BioProject: PRJNA649644 BioSample: SAMN15675875 KEYWORDS WGS. SOURCE Vespa mandarinia (Asian giant hornet) ORGANISM Vespa mandarinia Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Vespoidea; Vespidae; Vespinae; Vespa. REFERENCE 1 (bases 1 to 268) AUTHORS Childers,A.K., Geib,S.M., Smith,T.P.L., Foster,L.J., Kauwe,A.N. and Korlach,J. TITLE Vespa mandarinia genome assembly JOURNAL Unpublished REFERENCE 2 (bases 1 to 268) AUTHORS Childers,A.K., Geib,S.M., Smith,T.P.L., Foster,L.J., Kauwe,A.N. and Korlach,J. TITLE Direct Submission JOURNAL Submitted (03-AUG-2020) Bee Research Laboratory, USDA-ARS, 10300 Baltimore Avenue, Bldg 306 BARC-East, Beltsville, MD 20705, USA COMMENT The Vespa mandarinia whole genome shotgun (WGS) project has the project accession JACHAV000000000. This version of the project (01) has the accession number JACHAV010000000, and consists of sequences JACHAV010000001-JACHAV010000268. ##Genome-Assembly-Data-START## Assembly Date :: JUN-2020 Assembly Method :: IPA v. 1.0.2 Assembly Name :: V.mandarinia_Nanaimo_p1.0 Diploid :: Principal Pseudohaplotype Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 135x Sequencing Technology :: PacBio Sequel ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..268 /organism="Vespa mandarinia" /mol_type="genomic DNA" /isolate="Nanaimo" /isolation_source="Nanaimo on Vancouver Island" /db_xref="taxon:7446" /sex="female" /tissue_type="thorax" /dev_stage="worker" /country="Canada: Nanaimo, Vancouver Island, British Columbia" /lat_lon="49.152809 N 123.943125 W" /collection_date="2019-09-18" /collected_by="John Duff" WGS JACHAV010000001-JACHAV010000268 WGS_SCAFLD CM024295 // LOCUS CAJEUE010000000 16368 rc DNA linear ROD 03-AUG-2020 DEFINITION Arvicola amphibius, whole genome shotgun sequencing project. ACCESSION CAJEUE000000000 VERSION CAJEUE000000000.1 DBLINK BioProject: PRJEB39549 BioSample: SAMEA994740 KEYWORDS WGS. SOURCE Arvicola amphibius (Eurasian water vole) ORGANISM Arvicola amphibius Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Arvicola. REFERENCE 1 (bases 1 to 16368) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (27-JUL-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Arvicola amphibius whole genome shotgun (WGS) project has the project accession CAJEUE000000000. This version of the project (01) has the accession number CAJEUE010000000, and consists of sequences CAJEUE010000001-CAJEUE010016368. The assembly mArvAmp1.1 is based on 55x PacBio data, 52x 10X Genomics Chromium data, BioNano data and 32x Dovetail Hi-C data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig separation with purge_dups, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding with Solve, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..16368 /organism="Arvicola amphibius" /mol_type="genomic DNA" /db_xref="taxon:1047088" WGS CAJEUE010000001-CAJEUE010016368 // LOCUS CAJEUF010000000 10447 rc DNA linear MAM 03-AUG-2020 DEFINITION Pipistrellus pipistrellus, whole genome shotgun sequencing project. ACCESSION CAJEUF000000000 VERSION CAJEUF000000000.1 DBLINK BioProject: PRJEB39565 BioSample: SAMEA994724 KEYWORDS WGS. SOURCE Pipistrellus pipistrellus (common pipistrelle) ORGANISM Pipistrellus pipistrellus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Vespertilionidae; Pipistrellus. REFERENCE 1 (bases 1 to 10447) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (27-JUL-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Pipistrellus pipistrellus whole genome shotgun (WGS) project has the project accession CAJEUF000000000. This version of the project (01) has the accession number CAJEUF010000000, and consists of sequences CAJEUF010000001-CAJEUF010010447. The assembly mPipPip1.1 is based on 62x PacBio data, 34x 10X Genomics Chromium data, and 58x Arima Hi-C data generated at the Wellcome Sanger Institute. The Hi-C data was derived from a separate sample, mPipPip2. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig separation with purge_dups, 10X based scaffolding with scaff10x, Hi-C based scaffolding with SALSA2, Arrow polishing, two rounds of FreeBayes polishing. The mitochondrial assembly was produced at The Rockefeller University using mitoVGP. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..10447 /organism="Pipistrellus pipistrellus" /mol_type="genomic DNA" /db_xref="taxon:59474" WGS CAJEUF010000001-CAJEUF010010447 // LOCUS CAJEUD010000000 300 rc DNA linear MAM 03-AUG-2020 DEFINITION Pipistrellus pipistrellus, whole genome shotgun sequencing project. ACCESSION CAJEUD000000000 VERSION CAJEUD000000000.1 DBLINK BioProject: PRJEB39564 BioSample: SAMEA994724 KEYWORDS WGS. SOURCE Pipistrellus pipistrellus (common pipistrelle) ORGANISM Pipistrellus pipistrellus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Vespertilionidae; Pipistrellus. REFERENCE 1 (bases 1 to 300) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (27-JUL-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Pipistrellus pipistrellus whole genome shotgun (WGS) project has the project accession CAJEUD000000000. This version of the project (01) has the accession number CAJEUD010000000, and consists of sequences CAJEUD010000001-CAJEUD010000300. The assembly mPipPip1.1 is based on 62x PacBio data, 34x 10X Genomics Chromium data, and 58x Arima Hi-C data generated at the Wellcome Sanger Institute. The Hi-C data was derived from a separate sample, mPipPip2. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig separation with purge_dups, 10X based scaffolding with scaff10x, Hi-C based scaffolding with SALSA2, Arrow polishing, two rounds of FreeBayes polishing. The mitochondrial assembly was produced at The Rockefeller University using mitoVGP. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..300 /organism="Pipistrellus pipistrellus" /mol_type="genomic DNA" /db_xref="taxon:59474" WGS CAJEUD010000001-CAJEUD010000300 // LOCUS CACRXJ020000000 617 rc DNA linear ROD 10-JUL-2020 DEFINITION Sciurus vulgaris, whole genome shotgun sequencing project. ACCESSION CACRXJ000000000 VERSION CACRXJ000000000.2 DBLINK BioProject: PRJEB35380 BioSample: SAMEA994733 KEYWORDS WGS. SOURCE Sciurus vulgaris (Eurasian red squirrel) ORGANISM Sciurus vulgaris Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Sciurinae; Sciurini; Sciurus. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (14-NOV-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 617) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (22-JUN-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT On Jul 31, 2020 this sequence version replaced CACRXJ000000000.1. The Sciurus vulgaris whole genome shotgun (WGS) project has the project accession CACRXJ000000000. This version of the project (02) has the accession number CACRXJ020000000, and consists of sequences CACRXJ020000001-CACRXJ020000617. The assembly mSciVul1.2 is based on 23x PacBio data and 44x 10X Genomics Chromium data generated at the Wellcome Sanger Institute, BioNano data generated at the Rockefeller University Vertebrate Genome Laboratory, and 17x Hi-C data generated at the Baylor College of Medicine. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with purge_dups, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, Hi-C based scaffolding and improvement by the Aiden lab as part of a collaboration with DNA Zoo using 3D-DNA and Juicebox, Arrow polishing, and two rounds of FreeBayes polishing. The mitochondrial assembly was produced at The Rockefeller University using mitoVGP. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..617 /organism="Sciurus vulgaris" /mol_type="genomic DNA" /db_xref="taxon:55149" WGS CACRXJ020000001-CACRXJ020000617 // LOCUS CACRXI020000000 731 rc DNA linear ROD 10-JUL-2020 DEFINITION Sciurus carolinensis, whole genome shotgun sequencing project. ACCESSION CACRXI000000000 VERSION CACRXI000000000.2 DBLINK BioProject: PRJEB35386 BioSample: SAMEA994726 KEYWORDS WGS. SOURCE Sciurus carolinensis (gray squirrel) ORGANISM Sciurus carolinensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Sciurinae; Sciurini; Sciurus. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (14-NOV-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 731) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (22-JUN-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT On Jul 31, 2020 this sequence version replaced CACRXI000000000.1. The Sciurus carolinensis whole genome shotgun (WGS) project has the project accession CACRXI000000000. This version of the project (02) has the accession number CACRXI020000000, and consists of sequences CACRXI020000001-CACRXI020000731. The assembly mSciCar1.2 is based on 74x PacBio data, 40x 10X Genomics Chromium data, and 42x Dovetail Hi-C data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with purge_dups, 10X based scaffolding with scaff10x, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. The mitochondrial assembly was produced at The Rockefeller University using mitoVGP. Finally, the assembly was analysed and manually improved using gEVAL. Since Hi-C data were sparse, curation was aided by synteny with the assembly for Sciurus vulgaris simultaneously being curated by the Wellcome Sanger Institute. Chromosome-scale scaffolds confirmed by the Hi-C data and synteny have been named in order of size. FEATURES Location/Qualifiers source 1..731 /organism="Sciurus carolinensis" /mol_type="genomic DNA" /db_xref="taxon:30640" WGS CACRXI020000001-CACRXI020000731 // LOCUS CACRWI020000000 23 rc DNA linear MAM 10-JUL-2020 DEFINITION Lutra lutra, whole genome shotgun sequencing project. ACCESSION CACRWI000000000 VERSION CACRWI000000000.2 DBLINK BioProject: PRJEB35339 BioSample: SAMEA994731 KEYWORDS WGS. SOURCE Lutra lutra (Eurasian river otter) ORGANISM Lutra lutra Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Mustelidae; Lutrinae; Lutra. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (12-NOV-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 23) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (22-JUN-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT On Jul 31, 2020 this sequence version replaced CACRWI000000000.1. The Lutra lutra whole genome shotgun (WGS) project has the project accession CACRWI000000000. This version of the project (02) has the accession number CACRWI020000000, and consists of sequences CACRWI020000001-CACRWI020000023. The assembly mLutLut1.2 is based on 63x PacBio data, 58x 10X Genomics Chromium data, BioNano data and 17x Hi-C data generated at the Baylor College of Medicine. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with Purge Haplotigs, 10X based scaffolding with scaff10x, Hi-C based scaffolding and improvement by the Aiden lab as part of a collaboration with DNA Zoo using 3D-DNA and Juicebox, Arrow polishing, and two rounds of FreeBayes polishing. The mitochondrial assembly was produced at The Rockefeller University using mitoVGP. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..23 /organism="Lutra lutra" /mol_type="genomic DNA" /db_xref="taxon:9657" WGS CACRWI020000001-CACRWI020000023 // LOCUS CABFKE020000000 65 rc DNA linear VRT 10-JUL-2020 DEFINITION Syngnathus acus, whole genome shotgun sequencing project. ACCESSION CABFKE000000000 VERSION CABFKE000000000.2 DBLINK BioProject: PRJEB32741 BioSample: SAMEA104381750 KEYWORDS WGS. SOURCE Syngnathus acus (greater pipefish) ORGANISM Syngnathus acus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Syngnathus. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (24-MAY-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 65) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (22-JUN-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT On Jul 31, 2020 this sequence version replaced CABFKE000000000.1. The Syngnathus acus whole genome shotgun (WGS) project has the project accession CABFKE000000000. This version of the project (02) has the accession number CABFKE020000000, and consists of sequences CABFKE020000001-CABFKE020000065. The assembly fSynAcu1.2 is based on 96x PacBio data, 190x coverage 10X Genomics Chromium data, and 159x coverage Dovetail Hi-C data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with Purge Haplotigs, 10X based scaffolding with scaff10x, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. The mitochondrial assembly was produced at The Rockefeller University using mitoVGP. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds are named by synteny to medaka. FEATURES Location/Qualifiers source 1..65 /organism="Syngnathus acus" /mol_type="genomic DNA" /db_xref="taxon:161584" WGS CABFKE020000001-CABFKE020000065 // LOCUS CAADHS020000000 440 rc DNA linear VRT 10-JUL-2020 DEFINITION Denticeps clupeoides, whole genome shotgun sequencing project. ACCESSION CAADHS000000000 VERSION CAADHS000000000.2 DBLINK BioProject: PRJEB31545 BioSample: SAMEA104129917 KEYWORDS WGS. SOURCE Denticeps clupeoides (denticle herring) ORGANISM Denticeps clupeoides Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Denticipitoidei; Denticipitidae; Denticeps. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (05-MAR-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 440) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (24-JUN-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT On Jul 31, 2020 this sequence version replaced CAADHS000000000.1. The Denticeps clupeoides whole genome shotgun (WGS) project has the project accession CAADHS000000000. This version of the project (02) has the accession number CAADHS020000000, and consists of sequences CAADHS020000001-CAADHS020000440. The assembly fDenClu1.2 is based on 63x PacBio Sequel data and 89x coverage Illumina HiSeqX data from a 10X Genomics Chromium library generated at the Wellcome Sanger Institute, as well as BioNano Saphyr DLE data generated at the Rockefeller University Vertebrate Genome Laboratory and 95x coverage HiSeqX data from a Hi-C library prepared by Arima Genomics. An initial PacBio assembly of fDenClu1 was made using Falcon-unzip, and retained haplotigs were identified using purge_haplotigs. The primary contigs were then scaffolded using the 10X data with scaff10x, then scaffolded further with BioNano hybrid scaffolding and scaffolded further still using the Hi-C data with SALSA2. Polishing and gap-filling of both the primary scaffolds and haplotigs was performed using the PacBio reads and Arrow, followed by two rounds of Illumina polishing using the 10X data and freebayes. The mitochondrial assembly was produced at The Rockefeller University using mitoVGP. Finally, the assembly was manually improved using gEVAL to correct mis-joins, improve concordance with the BioNano and Hi-C data and remove retained haplotypic duplication using purge_haplotigs. Chromosomes identified from the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..440 /organism="Denticeps clupeoides" /mol_type="genomic DNA" /db_xref="taxon:299321" WGS CAADHS020000001-CAADHS020000440 // LOCUS CAAAFV020000000 418 rc DNA linear VRT 10-JUL-2020 DEFINITION Gouania willdenowi, whole genome shotgun sequencing project. ACCESSION CAAAFV000000000 VERSION CAAAFV000000000.2 DBLINK BioProject: PRJEB30359 BioSample: SAMEA104026382 KEYWORDS WGS. SOURCE Gouania willdenowi (blunt-snouted clingfish) ORGANISM Gouania willdenowi Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Blenniimorphae; Blenniiformes; Gobiesocoidei; Gobiesocidae; Gobiesocinae; Gouania. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (14-DEC-2018) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 418) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (22-JUN-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT On Jul 31, 2020 this sequence version replaced CAAAFV000000000.1. The Gouania willdenowi whole genome shotgun (WGS) project has the project accession CAAAFV000000000. This version of the project (02) has the accession number CAAAFV020000000, and consists of sequences CAAAFV020000001-CAAAFV020000418. The assembly fGouWil2.2 is based on 58x PacBio Sequel data, 67x coverage Illumina HiSeqX data from a 10X Genomics Chromium library and two-enzyme BioNano Irys data generated at the Wellcome Sanger Institute as well as 83x coverage HiSeqX data from a Hi-C library prepared by Arima Genomics. The assembly was made using the Vertebrate Genomes Project v1.5 assembly pipeline on DNAnexus. An initial PacBio assembly was made using Falcon-unzip, and retained haplotigs were identified using purge_haplotigs. The primary contigs were then scaffolded using the 10X data with scaff10x, then scaffolded further with BioNano hybrid scaffolding and scaffolded further still using the Hi-C data with SALSA2. Polishing and gap-filling of both the primary scaffolds and haplotigs was performed using the PacBio reads and Arrow, followed by two rounds of Illumina polishing using the 10X data and freebayes. The mitochondrial assembly was produced at The Rockefeller University using mitoVGP. Finally, the assembly was manually improved using gEVAL to correct mis-joins and improve concordance with the BioNano and Hi-C data. Chromosomes are named by synteny to medaka. FEATURES Location/Qualifiers source 1..418 /organism="Gouania willdenowi" /mol_type="genomic DNA" /db_xref="taxon:441366" WGS CAAAFV020000001-CAAAFV020000418 // LOCUS CAHPTB020000000 729 rc DNA linear VRT 10-JUL-2020 DEFINITION Danio rerio, whole genome shotgun sequencing project. ACCESSION CAHPTB000000000 VERSION CAHPTB000000000.2 DBLINK BioProject: PRJEB38588 BioSample: SAMEA4760849 KEYWORDS WGS. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (29-MAY-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 729) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (22-JUN-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT On Jul 31, 2020 this sequence version replaced CAHPTB000000000.1. The Danio rerio whole genome shotgun (WGS) project has the project accession CAHPTB000000000. This version of the project (02) has the accession number CAHPTB020000000, and consists of sequences CAHPTB020000001-CAHPTB020000729. The assembly fDreTuH1.2 is based on 67x PacBio Sequel II data generated by Gene Myers at the MPI of Molecular Cell Biology and Genetics, Dresden, 96x 10X Genomics Chromium data, BioNano data, and 83x Dovetail Hi-C data (from an different individual, SAMEA104026397) generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: segregation of PacBio reads representing the two haplotypes using trioCanu and k-mers from the Illumina-sequenced parents (maternal: SAMEA3891248 at 143x coverage, and paternal: SAMEA3891249 at 136x coverage), separate assembly of each haplotype using Canu, polishing with Arrow from the binned reads, retained duplication removal with purge_dups, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, Hi-C based scaffolding with SALSA2, further Arrow polishing, and two rounds of FreeBayes Illumina polishing. The mitochondrial assembly was produced at The Rockefeller University using mitoVGP. Finally, the assembly was analysed and manually improved using gEVAL and marker placement from the high density genetic map SATMAP (PUBMED: 23594743). FEATURES Location/Qualifiers source 1..729 /organism="Danio rerio" /mol_type="genomic DNA" /db_xref="taxon:7955" WGS CAHPTB020000001-CAHPTB020000729 // LOCUS CAAAFN020000000 134 rc DNA linear VRT 10-JUL-2020 DEFINITION Parambassis ranga, whole genome shotgun sequencing project. ACCESSION CAAAFN000000000 VERSION CAAAFN000000000.2 DBLINK BioProject: PRJEB30257 BioSample: SAMEA4675621 KEYWORDS WGS. SOURCE Parambassis ranga (Indian glassy fish) ORGANISM Parambassis ranga Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Ambassidae; Parambassis. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (10-DEC-2018) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom REFERENCE 2 (bases 1 to 134) CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (22-JUN-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT On Jul 31, 2020 this sequence version replaced CAAAFN000000000.1. The Parambassis ranga whole genome shotgun (WGS) project has the project accession CAAAFN000000000. This version of the project (02) has the accession number CAAAFN020000000, and consists of sequences CAAAFN020000001-CAAAFN020000134. The assembly fParRan2.2 is based on 101x PacBio Sequel data, 122x coverage Illumina HiSeqX data from a 10X Genomics Chromium library generated at the Wellcome Sanger Institute as well as BioNano Saphyr DLE data generated at the Rockefeller University Vertebrate Genome Laboratory and 108x coverage HiSeqX data from a Hi-C library prepared by Arima Genomics. An initial PacBio assembly was made using Falcon-unzip, and retained haplotigs were identified using purge_haplotigs. The primary contigs were then scaffolded using the 10X data with scaff10x, then scaffolded further with BioNano hybrid scaffolding and scaffolded further still using the Hi-C data with SALSA2. Polishing and gap-filling of both the primary scaffolds and haplotigs was performed using the PacBio reads and Arrow, followed by two rounds of Illumina polishing using the 10X data and freebayes. The mitochondrial assembly was produced at The Rockefeller University using mitoVGP. Finally, the assembly was manually improved using gEVAL to correct mis-joins and improve concordance with the BioNano and Hi-C data. Chromosomes are named by synteny to medaka. FEATURES Location/Qualifiers source 1..134 /organism="Parambassis ranga" /mol_type="genomic DNA" /db_xref="taxon:210632" WGS CAAAFN020000001-CAAAFN020000134 // LOCUS JAAGWJ010000000 109 rc DNA linear VRT 13-JUL-2020 DEFINITION Betta splendens isolate SP2018, whole genome shotgun sequencing project. ACCESSION JAAGWJ000000000 VERSION JAAGWJ000000000.1 DBLINK BioProject: PRJNA592275 BioSample: SAMN13419572 KEYWORDS WGS. SOURCE Betta splendens (Siamese fighting fish) ORGANISM Betta splendens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Anabantiformes; Anabantoidei; Osphronemidae; Betta. REFERENCE 1 (bases 1 to 109) AUTHORS Prost,S., Petersen,M., Grethlein,M., Hahn,S.J., Kuschik-Maczollek,N., Olesiuk,M.E., Reschke,J.O., Schmey,T.E., Zimmer,C., Gupta,D.K., Schell,T., Coimbra,R., De Raad,J., Lammers,F., Winter,S. and Janke,A. TITLE Improving the Chromosome-Level Genome Assembly of the Siamese Fighting Fish (Betta splendens) in a University Master's Course JOURNAL G3 (Bethesda) 10 (7), 2179-2183 (2020) PUBMED 32385046 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 109) AUTHORS Prost,S. and Gupta,D.K. TITLE Direct Submission JOURNAL Submitted (30-APR-2020) Senckenberg Biodiversity Genome Collection, LOEWE Centre for Translational Biodiversity Genomics (LOEWE-TBG), Georg-Voigt-Str. 14-16, Frankfurt am Main 60325, Germany COMMENT The Betta splendens whole genome shotgun (WGS) project has the project accession JAAGWJ000000000. This version of the project (01) has the accession number JAAGWJ010000000, and consists of sequences JAAGWJ010000001-JAAGWJ010000109. ##Genome-Assembly-Data-START## Assembly Date :: 10-OCT-2019 Assembly Method :: Minimap v. 2.14-r883; Miniasm v. 0.3-r179; Racon v. 1.3.1; Pilon v. 1.23 Assembly Name :: Bspl.v1.2018 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 63.0x Sequencing Technology :: Oxford Nanopore MinION; Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..109 /organism="Betta splendens" /mol_type="genomic DNA" /isolate="SP2018" /isolation_source="aquarium" /db_xref="taxon:158456" /country="Germany: Aquarium" /collection_date="2018-11-15" WGS JAAGWJ010000001-JAAGWJ010000109 WGS_SCAFLD CM023891-CM023911 // LOCUS WBNQ01000000 615194 rc DNA linear VRT 10-JUL-2020 DEFINITION Spizella passerina isolate B10K-DU-023-52, whole genome shotgun sequencing project. ACCESSION WBNQ00000000 VERSION WBNQ00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253929 KEYWORDS WGS. SOURCE Spizella passerina (chipping sparrow) ORGANISM Spizella passerina Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Spizella. REFERENCE 1 (bases 1 to 615194) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 615194) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (17-FEB-2020) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Spizella passerina whole genome shotgun (WGS) project has the project accession WBNQ00000000. This version of the project (01) has the accession number WBNQ01000000, and consists of sequences WBNQ01000001-WBNQ01615194. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 71x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..615194 /organism="Spizella passerina" /mol_type="genomic DNA" /isolate="B10K-DU-023-52" /specimen_voucher="USNM:633838" /db_xref="taxon:40210" /sex="female" /tissue_type="mixed tissue sample" /country="USA" /lat_lon="36.72 N 83.19 W" /collection_date="30-May-2001" WGS WBNQ01000001-WBNQ01615194 // LOCUS VWPO01000000 12282 rc DNA linear VRT 10-JUL-2020 DEFINITION Glareola pratincola isolate B10K-CU-031-08, whole genome shotgun sequencing project. ACCESSION VWPO00000000 VERSION VWPO00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253752 KEYWORDS WGS. SOURCE Glareola pratincola ORGANISM Glareola pratincola Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Glareolidae; Glareola. REFERENCE 1 (bases 1 to 12282) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 12282) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Glareola pratincola whole genome shotgun (WGS) project has the project accession VWPO00000000. This version of the project (01) has the accession number VWPO01000000, and consists of sequences VWPO01000001-VWPO01012282. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 60x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..12282 /organism="Glareola pratincola" /mol_type="genomic DNA" /isolate="B10K-CU-031-08" /specimen_voucher="LSUMZ:Ornithology:B62518" /db_xref="taxon:43316" /sex="female" /tissue_type="muscle" /country="Kuwait" /lat_lon="29.69 N 48.11 E" /collection_date="20-Apr-2006" WGS VWPO01000001-VWPO01012282 // LOCUS WBMZ01000000 31606 rc DNA linear VRT 10-JUL-2020 DEFINITION Atrichornis clamosus isolate B10K-DU-029-61, whole genome shotgun sequencing project. ACCESSION WBMZ00000000 VERSION WBMZ00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253955 KEYWORDS WGS. SOURCE Atrichornis clamosus ORGANISM Atrichornis clamosus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Menuridae; Atrichornis. REFERENCE 1 (bases 1 to 31606) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 31606) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (17-FEB-2020) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Atrichornis clamosus whole genome shotgun (WGS) project has the project accession WBMZ00000000. This version of the project (01) has the accession number WBMZ01000000, and consists of sequences WBMZ01000001-WBMZ01031606. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 94x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..31606 /organism="Atrichornis clamosus" /mol_type="genomic DNA" /isolate="B10K-DU-029-61" /db_xref="taxon:449594" /sex="female" /tissue_type="blood" /country="Australia" WGS WBMZ01000001-WBMZ01031606 // LOCUS VWPU01000000 40841 rc DNA linear VRT 10-JUL-2020 DEFINITION Callaeas wilsoni isolate B10K-OTA-212792, whole genome shotgun sequencing project. ACCESSION VWPU00000000 VERSION VWPU00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253743 KEYWORDS WGS. SOURCE Callaeas wilsoni (North Island kokako) ORGANISM Callaeas wilsoni Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Callaeidae; Callaeas. REFERENCE 1 (bases 1 to 40841) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 40841) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Callaeas wilsoni whole genome shotgun (WGS) project has the project accession VWPU00000000. This version of the project (01) has the accession number VWPU01000000, and consists of sequences VWPU01000001-VWPU01040841. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 123x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..40841 /organism="Callaeas wilsoni" /mol_type="genomic DNA" /isolate="B10K-OTA-212792" /specimen_voucher="OTA:GO-YM212792" /db_xref="taxon:1347786" /tissue_type="blood" /country="New Zealand" /lat_lon="38.47 S 175.06 E" /collection_date="Nov-2015" WGS VWPU01000001-VWPU01040841 // LOCUS VWPQ01000000 29877 rc DNA linear VRT 10-JUL-2020 DEFINITION Ceuthmochares aereus isolate B10K-CU-031-02, whole genome shotgun sequencing project. ACCESSION VWPQ00000000 VERSION VWPQ00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253749 KEYWORDS WGS. SOURCE Ceuthmochares aereus ORGANISM Ceuthmochares aereus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Cuculiformes; Cuculidae; Ceuthmochares. REFERENCE 1 (bases 1 to 29877) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 29877) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Ceuthmochares aereus whole genome shotgun (WGS) project has the project accession VWPQ00000000. This version of the project (01) has the accession number VWPQ01000000, and consists of sequences VWPQ01000001-VWPQ01029877. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 65x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..29877 /organism="Ceuthmochares aereus" /mol_type="genomic DNA" /isolate="B10K-CU-031-02" /specimen_voucher="LSUMZ:Ornithology:B45261" /db_xref="taxon:1961834" /sex="male" /tissue_type="muscle" /country="Ghana" /lat_lon="6.62 N 2.66 W" /collection_date="23-Mar-2003" WGS VWPQ01000001-VWPQ01029877 // LOCUS WEIY01000000 5183 rc DNA linear VRT 10-JUL-2020 DEFINITION Pteruthius melanotis isolate B10K-IZ-033-77, whole genome shotgun sequencing project. ACCESSION WEIY00000000 VERSION WEIY00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253969 KEYWORDS WGS. SOURCE Pteruthius melanotis ORGANISM Pteruthius melanotis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Timaliidae; Pteruthius. REFERENCE 1 (bases 1 to 5183) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 5183) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (17-FEB-2020) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Pteruthius melanotis whole genome shotgun (WGS) project has the project accession WEIY00000000. This version of the project (01) has the accession number WEIY01000000, and consists of sequences WEIY01000001-WEIY01005183. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 52x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..5183 /organism="Pteruthius melanotis" /mol_type="genomic DNA" /isolate="B10K-IZ-033-77" /db_xref="taxon:357074" /sex="male" /country="China" /collection_date="10-Feb-2014" WGS WEIY01000001-WEIY01005183 // LOCUS WBNK01000000 9447 rc DNA linear VRT 10-JUL-2020 DEFINITION Centropus bengalensis isolate B10K-DU-017-21, whole genome shotgun sequencing project. ACCESSION WBNK00000000 VERSION WBNK00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253924 KEYWORDS WGS. SOURCE Centropus bengalensis (lesser coucal) ORGANISM Centropus bengalensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Cuculiformes; Centropidae; Centropus. REFERENCE 1 (bases 1 to 9447) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 9447) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (17-FEB-2020) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Centropus bengalensis whole genome shotgun (WGS) project has the project accession WBNK00000000. This version of the project (01) has the accession number WBNK01000000, and consists of sequences WBNK01000001-WBNK01009447. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 56x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..9447 /organism="Centropus bengalensis" /mol_type="genomic DNA" /isolate="B10K-DU-017-21" /specimen_voucher="USNM:613053" /db_xref="taxon:1463675" /sex="female" /country="Philippines" /lat_lon="17.92 N 122.03 E" /collection_date="28-Apr-1989" WGS WBNK01000001-WBNK01009447 // LOCUS VZSW01000000 15791 rc DNA linear VRT 10-JUL-2020 DEFINITION Pomatorhinus ruficollis isolate B10K-IZ-033-81, whole genome shotgun sequencing project. ACCESSION VZSW00000000 VERSION VZSW00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253971 KEYWORDS WGS. SOURCE Pomatorhinus ruficollis (streak-breasted scimitar babbler) ORGANISM Pomatorhinus ruficollis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Timaliidae; Pomatorhinus. REFERENCE 1 (bases 1 to 15791) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 15791) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (17-FEB-2020) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Pomatorhinus ruficollis whole genome shotgun (WGS) project has the project accession VZSW00000000. This version of the project (01) has the accession number VZSW01000000, and consists of sequences VZSW01000001-VZSW01015791. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 83x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..15791 /organism="Pomatorhinus ruficollis" /mol_type="genomic DNA" /isolate="B10K-IZ-033-81" /specimen_voucher="IZCAS:20397" /db_xref="taxon:932028" /sex="male" /tissue_type="muscle" /country="China" /lat_lon="26.15 N 110.21 E" WGS VZSW01000001-VZSW01015791 // LOCUS WBNH01000000 36428 rc DNA linear VRT 10-JUL-2020 DEFINITION Urocolius indicus isolate B10K-DU-030-59, whole genome shotgun sequencing project. ACCESSION WBNH00000000 VERSION WBNH00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253966 KEYWORDS WGS. SOURCE Urocolius indicus ORGANISM Urocolius indicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Coliiformes; Coliidae; Urocolius. REFERENCE 1 (bases 1 to 36428) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 36428) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (17-FEB-2020) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Urocolius indicus whole genome shotgun (WGS) project has the project accession WBNH00000000. This version of the project (01) has the accession number WBNH01000000, and consists of sequences WBNH01000001-WBNH01036428. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 89x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..36428 /organism="Urocolius indicus" /mol_type="genomic DNA" /isolate="B10K-DU-030-59" /specimen_voucher="AMNH:DOT5802" /db_xref="taxon:458196" /sex="female" /country="South Africa" /lat_lon="24.91 S 28.86 E" /collection_date="24-Aug-1998" WGS WBNH01000001-WBNH01036428 // LOCUS WAAF01000000 65168 rc DNA linear VRT 10-JUL-2020 DEFINITION Tricholaema leucomelas isolate B10K-DU-002-37, whole genome shotgun sequencing project. ACCESSION WAAF00000000 VERSION WAAF00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253853 KEYWORDS WGS. SOURCE Tricholaema leucomelas (pied barbet) ORGANISM Tricholaema leucomelas Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Piciformes; Lybiidae; Tricholaema. REFERENCE 1 (bases 1 to 65168) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 65168) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (17-FEB-2020) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Tricholaema leucomelas whole genome shotgun (WGS) project has the project accession WAAF00000000. This version of the project (01) has the accession number WAAF01000000, and consists of sequences WAAF01000001-WAAF01065168. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 76x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..65168 /organism="Tricholaema leucomelas" /mol_type="genomic DNA" /isolate="B10K-DU-002-37" /specimen_voucher="USNM:642560" /db_xref="taxon:240729" /sex="female" /tissue_type="muscle" /country="Namibia" /lat_lon="27.59 S 16.88 E" /collection_date="22-Aug-2009" WGS WAAF01000001-WAAF01065168 // LOCUS WAAE01000000 153465 rc DNA linear VRT 10-JUL-2020 DEFINITION Nicator chloris isolate B10K-DU-002-40, whole genome shotgun sequencing project. ACCESSION WAAE00000000 VERSION WAAE00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253854 KEYWORDS WGS. SOURCE Nicator chloris ORGANISM Nicator chloris Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Pycnonotidae; Nicator. REFERENCE 1 (bases 1 to 153465) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 153465) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (17-FEB-2020) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Nicator chloris whole genome shotgun (WGS) project has the project accession WAAE00000000. This version of the project (01) has the accession number WAAE01000000, and consists of sequences WAAE01000001-WAAE01153465. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 78x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..153465 /organism="Nicator chloris" /mol_type="genomic DNA" /isolate="B10K-DU-002-40" /specimen_voucher="USNM:642941" /db_xref="taxon:237433" /sex="female" /tissue_type="muscle" /country="Gabon" /lat_lon="2.87 S 10.12 E" /collection_date="26-Oct-2009" WGS WAAE01000001-WAAE01153465 // LOCUS VZTL01000000 239406 rc DNA linear VRT 10-JUL-2020 DEFINITION Scopus umbretta isolate B10K-DU-002-70, whole genome shotgun sequencing project. ACCESSION VZTL00000000 VERSION VZTL00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253872 KEYWORDS WGS. SOURCE Scopus umbretta (hamerkop) ORGANISM Scopus umbretta Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Ciconiiformes; Scopidae; Scopus. REFERENCE 1 (bases 1 to 239406) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 239406) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (17-FEB-2020) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Scopus umbretta whole genome shotgun (WGS) project has the project accession VZTL00000000. This version of the project (01) has the accession number VZTL01000000, and consists of sequences VZTL01000001-VZTL01239406. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 54x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..239406 /organism="Scopus umbretta" /mol_type="genomic DNA" /isolate="B10K-DU-002-70" /specimen_voucher="LSUMZ:Ornithology:B29000" /db_xref="taxon:33581" /tissue_type="muscle" /collection_date="18-Dec-1996" WGS VZTL01000001-VZTL01239406 // LOCUS VZUD01000000 60011 rc DNA linear VRT 10-JUL-2020 DEFINITION Cepphus grylle isolate OUT-0020, whole genome shotgun sequencing project. ACCESSION VZUD00000000 VERSION VZUD00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253990 KEYWORDS WGS. SOURCE Cepphus grylle ORGANISM Cepphus grylle Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Alcidae; Cepphus. REFERENCE 1 (bases 1 to 60011) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 60011) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (10-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Cepphus grylle whole genome shotgun (WGS) project has the project accession VZUD00000000. This version of the project (01) has the accession number VZUD01000000, and consists of sequences VZUD01000001-VZUD01060011. ##Genome-Assembly-Data-START## Assembly Method :: Platanus v. NA Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 115x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..60011 /organism="Cepphus grylle" /mol_type="genomic DNA" /isolate="OUT-0020" /db_xref="taxon:28697" /sex="female" /tissue_type="liver" /country="USA" /lat_lon="71.23 N 155.67 W" WGS VZUD01000001-VZUD01060011 // LOCUS VZZY01000000 39629 rc DNA linear VRT 10-JUL-2020 DEFINITION Eurystomus gularis isolate B10K-DU-002-51, whole genome shotgun sequencing project. ACCESSION VZZY00000000 VERSION VZZY00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253862 KEYWORDS WGS. SOURCE Eurystomus gularis ORGANISM Eurystomus gularis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Coraciiformes; Coraciidae; Eurystomus. REFERENCE 1 (bases 1 to 39629) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 39629) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (19-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Eurystomus gularis whole genome shotgun (WGS) project has the project accession VZZY00000000. This version of the project (01) has the accession number VZZY01000000, and consists of sequences VZZY01000001-VZZY01039629. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 35x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..39629 /organism="Eurystomus gularis" /mol_type="genomic DNA" /isolate="B10K-DU-002-51" /specimen_voucher="LSUMZ:Ornithology:B39360" /db_xref="taxon:325343" /sex="female" /tissue_type="muscle" /country="Ghana" /lat_lon="5.34 N 1.23 W" /collection_date="16-Feb-2000" WGS VZZY01000001-VZZY01039629 // LOCUS VZTK01000000 158535 rc DNA linear VRT 10-JUL-2020 DEFINITION Podargus strigoides isolate B10K-DU-001-40, whole genome shotgun sequencing project. ACCESSION VZTK00000000 VERSION VZTK00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253797 KEYWORDS WGS. SOURCE Podargus strigoides (tawny frogmouth) ORGANISM Podargus strigoides Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Caprimulgimorphae; Caprimulgiformes; Podargidae; Podargus. REFERENCE 1 (bases 1 to 158535) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 158535) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (17-FEB-2020) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Podargus strigoides whole genome shotgun (WGS) project has the project accession VZTK00000000. This version of the project (01) has the accession number VZTK01000000, and consists of sequences VZTK01000001-VZTK01158535. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 69x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..158535 /organism="Podargus strigoides" /mol_type="genomic DNA" /isolate="B10K-DU-001-40" /specimen_voucher="USNM:612703" /db_xref="taxon:8905" /sex="female" /tissue_type="muscle" /country="Australia" /lat_lon="27.51 S 153.01 E" /collection_date="17-Feb-1987" WGS VZTK01000001-VZTK01158535 // LOCUS VWYH01000000 72610 rc DNA linear VRT 10-JUL-2020 DEFINITION Alopecoenas beccarii isolate B10K-DU-006-06, whole genome shotgun sequencing project. ACCESSION VWYH00000000 VERSION VWYH00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253886 KEYWORDS WGS. SOURCE Alopecoenas beccarii (Western bronze ground-dove) ORGANISM Alopecoenas beccarii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Columbiformes; Columbidae; Alopecoenas. REFERENCE 1 (bases 1 to 72610) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 72610) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (17-FEB-2020) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Alopecoenas beccarii whole genome shotgun (WGS) project has the project accession VWYH00000000. This version of the project (01) has the accession number VWYH01000000, and consists of sequences VWYH01000001-VWYH01072610. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 64x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..72610 /organism="Alopecoenas beccarii" /mol_type="genomic DNA" /isolate="B10K-DU-006-06" /specimen_voucher="USNM:615012" /db_xref="taxon:262131" /sex="female" /country="Papua New Guinea" /lat_lon="4.45 S 152.93 E" /collection_date="29-Jan-1994" WGS VWYH01000001-VWYH01072610 // LOCUS VZZU01000000 18833 rc DNA linear VRT 10-JUL-2020 DEFINITION Nyctiprogne leucopyga isolate B10K-DU-005-01, whole genome shotgun sequencing project. ACCESSION VZZU00000000 VERSION VZZU00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253883 KEYWORDS WGS. SOURCE Nyctiprogne leucopyga ORGANISM Nyctiprogne leucopyga Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Caprimulgimorphae; Caprimulgiformes; Caprimulgidae; Chordeilinae; Nyctiprogne. REFERENCE 1 (bases 1 to 18833) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 18833) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (19-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Nyctiprogne leucopyga whole genome shotgun (WGS) project has the project accession VZZU00000000. This version of the project (01) has the accession number VZZU01000000, and consists of sequences VZZU01000001-VZZU01018833. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 62x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..18833 /organism="Nyctiprogne leucopyga" /mol_type="genomic DNA" /isolate="B10K-DU-005-01" /specimen_voucher="USNM:572514" /db_xref="taxon:382315" /sex="female" /country="Brazil" /lat_lon="3.65 S 52.37 W" /collection_date="02-Sep-1986" WGS VZZU01000001-VZZU01018833 // LOCUS VZZW01000000 13769 rc DNA linear VRT 10-JUL-2020 DEFINITION Phaetusa simplex isolate B10K-DU-009-16, whole genome shotgun sequencing project. ACCESSION VZZW00000000 VERSION VZZW00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253896 KEYWORDS WGS. SOURCE Phaetusa simplex (large-billed tern) ORGANISM Phaetusa simplex Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Laridae; Phaetusa. REFERENCE 1 (bases 1 to 13769) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 13769) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (19-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Phaetusa simplex whole genome shotgun (WGS) project has the project accession VZZW00000000. This version of the project (01) has the accession number VZZW01000000, and consists of sequences VZZW01000001-VZZW01013769. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 48x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..13769 /organism="Phaetusa simplex" /mol_type="genomic DNA" /isolate="B10K-DU-009-16" /specimen_voucher="USNM:637171" /db_xref="taxon:297813" /sex="female" /tissue_type="muscle" /country="Guyana" /lat_lon="2.97 N 58.59 W" /collection_date="22-Aug-2006" WGS VZZW01000001-VZZW01013769 // LOCUS VZZX01000000 13084 rc DNA linear VRT 10-JUL-2020 DEFINITION Hirundo rustica isolate B10K-DU-001-67, whole genome shotgun sequencing project. ACCESSION VZZX00000000 VERSION VZZX00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253817 KEYWORDS WGS. SOURCE Hirundo rustica (Barn swallow) ORGANISM Hirundo rustica Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Hirundinidae; Hirundo. REFERENCE 1 (bases 1 to 13084) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 13084) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (25-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Hirundo rustica whole genome shotgun (WGS) project has the project accession VZZX00000000. This version of the project (01) has the accession number VZZX01000000, and consists of sequences VZZX01000001-VZZX01013084. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 117x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..13084 /organism="Hirundo rustica" /mol_type="genomic DNA" /isolate="B10K-DU-001-67" /specimen_voucher="USNM:626475" /db_xref="taxon:43150" /sex="female" /tissue_type="muscle" /country="USA" /lat_lon="30.48 N 86.61 W" /collection_date="02-May-2001" WGS VZZX01000001-VZZX01013084 // LOCUS VZZV01000000 4190 rc DNA linear VRT 10-JUL-2020 DEFINITION Circaetus pectoralis isolate B10K-DU-010-60, whole genome shotgun sequencing project. ACCESSION VZZV00000000 VERSION VZZV00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253898 KEYWORDS WGS. SOURCE Circaetus pectoralis (black-chested snake-eagle) ORGANISM Circaetus pectoralis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Accipitriformes; Accipitridae; Accipitrinae; Circaetus. REFERENCE 1 (bases 1 to 4190) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 4190) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (19-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Circaetus pectoralis whole genome shotgun (WGS) project has the project accession VZZV00000000. This version of the project (01) has the accession number VZZV01000000, and consists of sequences VZZV01000001-VZZV01004190. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 50x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..4190 /organism="Circaetus pectoralis" /mol_type="genomic DNA" /isolate="B10K-DU-010-60" /specimen_voucher="USNM:642474" /db_xref="taxon:321084" /sex="male" /tissue_type="muscle" /country="Namibia" WGS VZZV01000001-VZZV01004190 // LOCUS VZUA01000000 408627 rc DNA linear VRT 10-JUL-2020 DEFINITION Horornis vulcanius isolate B10K-DU-029-69, whole genome shotgun sequencing project. ACCESSION VZUA00000000 VERSION VZUA00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253956 KEYWORDS WGS. SOURCE Horornis vulcanius ORGANISM Horornis vulcanius Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Scotocercidae; Horornis. REFERENCE 1 (bases 1 to 408627) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 408627) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (10-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Horornis vulcanius whole genome shotgun (WGS) project has the project accession VZUA00000000. This version of the project (01) has the accession number VZUA01000000, and consists of sequences VZUA01000001-VZUA01408627. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 46x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..408627 /organism="Horornis vulcanius" /mol_type="genomic DNA" /isolate="B10K-DU-029-69" /specimen_voucher="LSUMZ:Ornithology:B52647" /db_xref="taxon:2585811" /sex="male" /tissue_type="muscle" /country="Malaysia" /lat_lon="5.59 N 116.44 E" /collection_date="29-Jul-2005" WGS VZUA01000001-VZUA01408627 // LOCUS VZUJ01000000 159311 rc DNA linear VRT 10-JUL-2020 DEFINITION Atlantisia rogersi isolate OUT-0055, whole genome shotgun sequencing project. ACCESSION VZUJ00000000 VERSION VZUJ00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12254006 KEYWORDS WGS. SOURCE Atlantisia rogersi (Inaccessible Island rail) ORGANISM Atlantisia rogersi Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Rallidae; Atlantisia. REFERENCE 1 (bases 1 to 159311) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 159311) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (10-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Atlantisia rogersi whole genome shotgun (WGS) project has the project accession VZUJ00000000. This version of the project (01) has the accession number VZUJ01000000, and consists of sequences VZUJ01000001-VZUJ01159311. ##Genome-Assembly-Data-START## Assembly Method :: SPAdes v. 3.5.0 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 41x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..159311 /organism="Atlantisia rogersi" /mol_type="genomic DNA" /isolate="OUT-0055" /db_xref="taxon:2478892" /sex="male" /tissue_type="blood" /country="United Kingdom" /lat_lon="37.29 S 12.69 W" /collection_date="23-Sep-2011" WGS VZUJ01000001-VZUJ01159311 // LOCUS VZZT01000000 16454 rc DNA linear VRT 10-JUL-2020 DEFINITION Fregetta grallaria isolate B10K-DU-006-09, whole genome shotgun sequencing project. ACCESSION VZZT00000000 VERSION VZZT00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253887 KEYWORDS WGS. SOURCE Fregetta grallaria (white-bellied storm-petrel) ORGANISM Fregetta grallaria Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Procellariiformes; Hydrobatidae; Fregetta. REFERENCE 1 (bases 1 to 16454) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 16454) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (19-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Fregetta grallaria whole genome shotgun (WGS) project has the project accession VZZT00000000. This version of the project (01) has the accession number VZZT01000000, and consists of sequences VZZT01000001-VZZT01016454. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 59x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..16454 /organism="Fregetta grallaria" /mol_type="genomic DNA" /isolate="B10K-DU-006-09" /specimen_voucher="USNM:615151" /db_xref="taxon:79628" /sex="female" /tissue_type="muscle" /lat_lon="5.00 S 110.00 W" /collection_date="27-Nov-1990" WGS VZZT01000001-VZZT01016454 // LOCUS VZUF01000000 144198 rc DNA linear VRT 10-JUL-2020 DEFINITION Molothrus ater isolate OUT-0049, whole genome shotgun sequencing project. ACCESSION VZUF00000000 VERSION VZUF00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12254001 KEYWORDS WGS. SOURCE Molothrus ater ORGANISM Molothrus ater Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Icteridae; Molothrus. REFERENCE 1 (bases 1 to 144198) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 144198) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (10-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Molothrus ater whole genome shotgun (WGS) project has the project accession VZUF00000000. This version of the project (01) has the accession number VZUF01000000, and consists of sequences VZUF01000001-VZUF01144198. ##Genome-Assembly-Data-START## Assembly Method :: MaSuRCA v. 3.2.1 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 63x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..144198 /organism="Molothrus ater" /mol_type="genomic DNA" /isolate="OUT-0049" /specimen_voucher="MSB:Bird:39518" /db_xref="taxon:84834" /sex="female" /tissue_type="muscle" /country="USA" /lat_lon="36.48 N 103.13 W" /collection_date="23-Dec-2011" WGS VZUF01000001-VZUF01144198 // LOCUS VZUE01000000 52038 rc DNA linear VRT 10-JUL-2020 DEFINITION Uria aalge isolate OUT-0019, whole genome shotgun sequencing project. ACCESSION VZUE00000000 VERSION VZUE00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253989 KEYWORDS WGS. SOURCE Uria aalge (common murre) ORGANISM Uria aalge Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Alcidae; Uria. REFERENCE 1 (bases 1 to 52038) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 52038) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (10-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Uria aalge whole genome shotgun (WGS) project has the project accession VZUE00000000. This version of the project (01) has the accession number VZUE01000000, and consists of sequences VZUE01000001-VZUE01052038. ##Genome-Assembly-Data-START## Assembly Method :: Platanus v. NA Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 95x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..52038 /organism="Uria aalge" /mol_type="genomic DNA" /isolate="OUT-0019" /db_xref="taxon:13746" /sex="female" /tissue_type="blood" /country="Norway" /lat_lon="70.38 N 31.15 E" /collection_date="Jun-2014" WGS VZUE01000001-VZUE01052038 // LOCUS VZUC01000000 53283 rc DNA linear VRT 10-JUL-2020 DEFINITION Rissa tridactyla isolate OUT-0021, whole genome shotgun sequencing project. ACCESSION VZUC00000000 VERSION VZUC00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253991 KEYWORDS WGS. SOURCE Rissa tridactyla (black-legged kittiwake) ORGANISM Rissa tridactyla Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Laridae; Rissa. REFERENCE 1 (bases 1 to 53283) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 53283) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (10-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Rissa tridactyla whole genome shotgun (WGS) project has the project accession VZUC00000000. This version of the project (01) has the accession number VZUC01000000, and consists of sequences VZUC01000001-VZUC01053283. ##Genome-Assembly-Data-START## Assembly Method :: Platanus v. NA Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 110x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..53283 /organism="Rissa tridactyla" /mol_type="genomic DNA" /isolate="OUT-0021" /db_xref="taxon:75485" /sex="female" /tissue_type="blood" WGS VZUC01000001-VZUC01053283 // LOCUS VZTM01000000 92876 rc DNA linear VRT 10-JUL-2020 DEFINITION Jacana jacana isolate B10K-DU-002-59, whole genome shotgun sequencing project. ACCESSION VZTM00000000 VERSION VZTM00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253869 KEYWORDS WGS. SOURCE Jacana jacana (wattled jacana) ORGANISM Jacana jacana Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Jacanidae; Jacana. REFERENCE 1 (bases 1 to 92876) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 92876) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Jacana jacana whole genome shotgun (WGS) project has the project accession VZTM00000000. This version of the project (01) has the accession number VZTM01000000, and consists of sequences VZTM01000001-VZTM01092876. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 42x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..92876 /organism="Jacana jacana" /mol_type="genomic DNA" /isolate="B10K-DU-002-59" /specimen_voucher="LSUMZ:Ornithology:B51411" /db_xref="taxon:54508" /sex="female" /tissue_type="muscle" /country="Panama" /lat_lon="8.39 N 80.42 W" /collection_date="22-Apr-2003" WGS VZTM01000001-VZTM01092876 // LOCUS VZUI01000000 98333 rc DNA linear VRT 10-JUL-2020 DEFINITION Cettia cetti isolate OUT-0056, whole genome shotgun sequencing project. ACCESSION VZUI00000000 VERSION VZUI00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12254007 KEYWORDS WGS. SOURCE Cettia cetti ORGANISM Cettia cetti Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Sylviidae; Acrocephalinae; Cettia. REFERENCE 1 (bases 1 to 98333) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 98333) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (10-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Cettia cetti whole genome shotgun (WGS) project has the project accession VZUI00000000. This version of the project (01) has the accession number VZUI01000000, and consists of sequences VZUI01000001-VZUI01098333. ##Genome-Assembly-Data-START## Assembly Method :: SPAdes v. 3.5.0 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 40x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..98333 /organism="Cettia cetti" /mol_type="genomic DNA" /isolate="OUT-0056" /db_xref="taxon:68486" /sex="male" /tissue_type="blood" /country="Spain" /lat_lon="38.10 N 1.28 W" /collection_date="May-2016" WGS VZUI01000001-VZUI01098333 // LOCUS VZUH01000000 89575 rc DNA linear VRT 10-JUL-2020 DEFINITION Xiphorhynchus elegans isolate OUT-0059, whole genome shotgun sequencing project. ACCESSION VZUH00000000 VERSION VZUH00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12254008 KEYWORDS WGS. SOURCE Xiphorhynchus elegans (elegant woodcreeper) ORGANISM Xiphorhynchus elegans Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Dendrocolaptidae; Xiphorhynchus. REFERENCE 1 (bases 1 to 89575) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 89575) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (10-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Xiphorhynchus elegans whole genome shotgun (WGS) project has the project accession VZUH00000000. This version of the project (01) has the accession number VZUH01000000, and consists of sequences VZUH01000001-VZUH01089575. ##Genome-Assembly-Data-START## Assembly Method :: SuperNova v. NA Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 79x Sequencing Technology :: 10X Genomics linked reads ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..89575 /organism="Xiphorhynchus elegans" /mol_type="genomic DNA" /isolate="OUT-0059" /specimen_voucher="MPEG:75162" /db_xref="taxon:269412" /sex="male" /tissue_type="muscle" /country="Brazil" /lat_lon="11.08 S 54.33 W" /collection_date="08-May-2012" WGS VZUH01000001-VZUH01089575 // LOCUS VZTT01000000 267835 rc DNA linear VRT 10-JUL-2020 DEFINITION Buphagus erythrorhynchus isolate B10K-DU-012-02, whole genome shotgun sequencing project. ACCESSION VZTT00000000 VERSION VZTT00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253904 KEYWORDS WGS. SOURCE Buphagus erythrorhynchus (red-billed oxpecker) ORGANISM Buphagus erythrorhynchus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sturnidae; Buphagus. REFERENCE 1 (bases 1 to 267835) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 267835) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Buphagus erythrorhynchus whole genome shotgun (WGS) project has the project accession VZTT00000000. This version of the project (01) has the accession number VZTT01000000, and consists of sequences VZTT01000001-VZTT01267835. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 50x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..267835 /organism="Buphagus erythrorhynchus" /mol_type="genomic DNA" /isolate="B10K-DU-012-02" /specimen_voucher="KANU:26688" /db_xref="taxon:245048" /sex="male" /country="Botswana" /lat_lon="21.83 S 28.39 E" /collection_date="17-Aug-2011" WGS VZTT01000001-VZTT01267835 // LOCUS VZTW01000000 130514 rc DNA linear VRT 10-JUL-2020 DEFINITION Thalassarche chlororhynchos isolate B10K-DU-029-24, whole genome shotgun sequencing project. ACCESSION VZTW00000000 VERSION VZTW00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253934 KEYWORDS WGS. SOURCE Thalassarche chlororhynchos (Atlantic yellow-nosed albatross) ORGANISM Thalassarche chlororhynchos Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Procellariiformes; Diomedeidae; Thalassarche. REFERENCE 1 (bases 1 to 130514) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 130514) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Thalassarche chlororhynchos whole genome shotgun (WGS) project has the project accession VZTW00000000. This version of the project (01) has the accession number VZTW01000000, and consists of sequences VZTW01000001-VZTW01130514. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 45x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..130514 /organism="Thalassarche chlororhynchos" /mol_type="genomic DNA" /isolate="B10K-DU-029-24" /specimen_voucher="USNM:635731" /db_xref="taxon:54017" /sex="male" /tissue_type="muscle" /country="Uruguay" /lat_lon="33.79 S 53.43 W" /collection_date="26-Oct-2005" WGS VZTW01000001-VZTW01130514 // LOCUS VZUG01000000 77859 rc DNA linear VRT 10-JUL-2020 DEFINITION Calonectris borealis isolate OUT-0025, whole genome shotgun sequencing project. ACCESSION VZUG00000000 VERSION VZUG00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253995 KEYWORDS WGS. SOURCE Calonectris borealis (Cory's shearwater) ORGANISM Calonectris borealis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Procellariiformes; Procellariidae; Calonectris. REFERENCE 1 (bases 1 to 77859) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 77859) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (10-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Calonectris borealis whole genome shotgun (WGS) project has the project accession VZUG00000000. This version of the project (01) has the accession number VZUG01000000, and consists of sequences VZUG01000001-VZUG01077859. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 130x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..77859 /organism="Calonectris borealis" /mol_type="genomic DNA" /isolate="OUT-0025" /specimen_voucher="personal:Jacob:6119913" /db_xref="taxon:1323832" /sex="female" /tissue_type="blood" /country="Spain" /lat_lon="27.84 N 15.79 W" /collection_date="25-Jun-2016" WGS VZUG01000001-VZUG01077859 // LOCUS VZUB01000000 56054 rc DNA linear VRT 10-JUL-2020 DEFINITION Oreotrochilus melanogaster isolate OUT-0002, whole genome shotgun sequencing project. ACCESSION VZUB00000000 VERSION VZUB00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253978 KEYWORDS WGS. SOURCE Oreotrochilus melanogaster ORGANISM Oreotrochilus melanogaster Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Caprimulgimorphae; Apodiformes; Trochilidae; Oreotrochilus. REFERENCE 1 (bases 1 to 56054) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 56054) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (10-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Oreotrochilus melanogaster whole genome shotgun (WGS) project has the project accession VZUB00000000. This version of the project (01) has the accession number VZUB01000000, and consists of sequences VZUB01000001-VZUB01056054. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 50x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..56054 /organism="Oreotrochilus melanogaster" /mol_type="genomic DNA" /isolate="OUT-0002" /specimen_voucher="MSB:Bird:31543" /db_xref="taxon:689266" /sex="male" /country="Peru" /lat_lon="11.63 S 76.43 W" /collection_date="16-Jan-2008" WGS VZUB01000001-VZUB01056054 // LOCUS VZTX01000000 51095 rc DNA linear VRT 10-JUL-2020 DEFINITION Pardalotus punctatus isolate B10K-DU-029-51, whole genome shotgun sequencing project. ACCESSION VZTX00000000 VERSION VZTX00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253951 KEYWORDS WGS. SOURCE Pardalotus punctatus (spotted pardalote) ORGANISM Pardalotus punctatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Meliphagoidea; Pardalotidae; Pardalotus. REFERENCE 1 (bases 1 to 51095) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 51095) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Pardalotus punctatus whole genome shotgun (WGS) project has the project accession VZTX00000000. This version of the project (01) has the accession number VZTX01000000, and consists of sequences VZTX01000001-VZTX01051095. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 47x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..51095 /organism="Pardalotus punctatus" /mol_type="genomic DNA" /isolate="B10K-DU-029-51" /specimen_voucher="MVMA:289" /db_xref="taxon:254575" /sex="female" /country="Australia" /lat_lon="34.02 S 115.95 E" /collection_date="12-Nov-1989" WGS VZTX01000001-VZTX01051095 // LOCUS VZTU01000000 58849 rc DNA linear VRT 10-JUL-2020 DEFINITION Zapornia atra isolate B10K-DU-011-47, whole genome shotgun sequencing project. ACCESSION VZTU00000000 VERSION VZTU00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253903 KEYWORDS WGS. SOURCE Zapornia atra ORGANISM Zapornia atra Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Rallidae; Zapornia. REFERENCE 1 (bases 1 to 58849) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 58849) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Zapornia atra whole genome shotgun (WGS) project has the project accession VZTU00000000. This version of the project (01) has the accession number VZTU01000000, and consists of sequences VZTU01000001-VZTU01058849. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 45x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..58849 /organism="Zapornia atra" /mol_type="genomic DNA" /isolate="B10K-DU-011-47" /specimen_voucher="USNM:542120" /db_xref="taxon:2585822" /sex="female" /tissue_type="mixed tissue sample" /country="Pitcairn Islands" /lat_lon="24.34 S 128.33 W" /collection_date="19-May-1987" WGS VZTU01000001-VZTU01058849 // LOCUS VYZQ01000000 247908 rc DNA linear VRT 10-JUL-2020 DEFINITION Mystacornis crossleyi isolate B10K-DU-002-82, whole genome shotgun sequencing project. ACCESSION VYZQ00000000 VERSION VYZQ00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253876 KEYWORDS WGS. SOURCE Mystacornis crossleyi ORGANISM Mystacornis crossleyi Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Timaliidae; Mystacornis. REFERENCE 1 (bases 1 to 247908) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 247908) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Mystacornis crossleyi whole genome shotgun (WGS) project has the project accession VYZQ00000000. This version of the project (01) has the accession number VYZQ01000000, and consists of sequences VYZQ01000001-VYZQ01247908. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 45x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..247908 /organism="Mystacornis crossleyi" /mol_type="genomic DNA" /isolate="B10K-DU-002-82" /specimen_voucher="FMNH:AVES:345860" /db_xref="taxon:98133" /sex="male" /country="Madagascar" /lat_lon="24.00 S 47.28 E" /collection_date="11-Aug-1989" WGS VYZQ01000001-VYZQ01247908 // LOCUS VZTY01000000 70421 rc DNA linear VRT 10-JUL-2020 DEFINITION Turnix velox isolate B10K-DU-029-46, whole genome shotgun sequencing project. ACCESSION VZTY00000000 VERSION VZTY00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253947 KEYWORDS WGS. SOURCE Turnix velox (Little buttonquail) ORGANISM Turnix velox Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Turnicidae; Turnix. REFERENCE 1 (bases 1 to 70421) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 70421) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Turnix velox whole genome shotgun (WGS) project has the project accession VZTY00000000. This version of the project (01) has the accession number VZTY01000000, and consists of sequences VZTY01000001-VZTY01070421. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 52x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..70421 /organism="Turnix velox" /mol_type="genomic DNA" /isolate="B10K-DU-029-46" /specimen_voucher="MVMA:130" /db_xref="taxon:2529409" /sex="male" /country="Australia" /lat_lon="31.75 S 131.22 E" /collection_date="27-Oct-1989" WGS VZTY01000001-VZTY01070421 // LOCUS VZTZ01000000 104345 rc DNA linear VRT 10-JUL-2020 DEFINITION Drymodes brunneopygia isolate B10K-DU-030-03, whole genome shotgun sequencing project. ACCESSION VZTZ00000000 VERSION VZTZ00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253961 KEYWORDS WGS. SOURCE Drymodes brunneopygia ORGANISM Drymodes brunneopygia Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Petroicidae; Drymodes. REFERENCE 1 (bases 1 to 104345) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 104345) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Drymodes brunneopygia whole genome shotgun (WGS) project has the project accession VZTZ00000000. This version of the project (01) has the accession number VZTZ01000000, and consists of sequences VZTZ01000001-VZTZ01104345. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 48x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..104345 /organism="Drymodes brunneopygia" /mol_type="genomic DNA" /isolate="B10K-DU-030-03" /specimen_voucher="MVMA:2664_1" /db_xref="taxon:626378" /country="Australia" /lat_lon="33.18 S 121.72 E" WGS VZTZ01000001-VZTZ01104345 // LOCUS VZTR01000000 64684 rc DNA linear VRT 10-JUL-2020 DEFINITION Chaetops frenatus isolate B10K-DU-012-41, whole genome shotgun sequencing project. ACCESSION VZTR00000000 VERSION VZTR00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253910 KEYWORDS WGS. SOURCE Chaetops frenatus (Rufous rock-jumper) ORGANISM Chaetops frenatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Picathartidae; Chaetops. REFERENCE 1 (bases 1 to 64684) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 64684) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Chaetops frenatus whole genome shotgun (WGS) project has the project accession VZTR00000000. This version of the project (01) has the accession number VZTR01000000, and consists of sequences VZTR01000001-VZTR01064684. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 42x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..64684 /organism="Chaetops frenatus" /mol_type="genomic DNA" /isolate="B10K-DU-012-41" /specimen_voucher="UWBM:52975" /db_xref="taxon:221966" /sex="female" /country="South Africa" /lat_lon="30.72 S 28.13 E" /collection_date="16-Nov-1994" WGS VZTR01000001-VZTR01064684 // LOCUS VZTS01000000 52986 rc DNA linear VRT 10-JUL-2020 DEFINITION Pluvianellus socialis isolate B10K-DU-012-14, whole genome shotgun sequencing project. ACCESSION VZTS00000000 VERSION VZTS00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253906 KEYWORDS WGS. SOURCE Pluvianellus socialis (magellanic plover) ORGANISM Pluvianellus socialis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Charadriidae; Pluvianellus. REFERENCE 1 (bases 1 to 52986) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 52986) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Pluvianellus socialis whole genome shotgun (WGS) project has the project accession VZTS00000000. This version of the project (01) has the accession number VZTS01000000, and consists of sequences VZTS01000001-VZTS01052986. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 48x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..52986 /organism="Pluvianellus socialis" /mol_type="genomic DNA" /isolate="B10K-DU-012-14" /specimen_voucher="ROM:ORN:167415" /db_xref="taxon:227228" /tissue_type="blood" /country="Chile" /lat_lon="53.25 S 70.31 W" /collection_date="15-Feb-1995" WGS VZTS01000001-VZTS01052986 // LOCUS VZTV01000000 249520 rc DNA linear VRT 10-JUL-2020 DEFINITION Anhinga rufa isolate B10K-DU-029-28, whole genome shotgun sequencing project. ACCESSION VZTV00000000 VERSION VZTV00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253935 KEYWORDS WGS. SOURCE Anhinga rufa (African darter) ORGANISM Anhinga rufa Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Pelecaniformes; Anhingidae; Anhinga. REFERENCE 1 (bases 1 to 249520) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 249520) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (10-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Anhinga rufa whole genome shotgun (WGS) project has the project accession VZTV00000000. This version of the project (01) has the accession number VZTV01000000, and consists of sequences VZTV01000001-VZTV01249520. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 48x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..249520 /organism="Anhinga rufa" /mol_type="genomic DNA" /isolate="B10K-DU-029-28" /specimen_voucher="USNM:642540" /db_xref="taxon:317792" /sex="male" /country="Namibia" /lat_lon="28.86 S 18.55 E" /collection_date="19-Aug-2009" WGS VZTV01000001-VZTV01249520 // LOCUS VZTO01000000 215209 rc DNA linear VRT 10-JUL-2020 DEFINITION Syrrhaptes paradoxus isolate B10K-DU-003-42, whole genome shotgun sequencing project. ACCESSION VZTO00000000 VERSION VZTO00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253880 KEYWORDS WGS. SOURCE Syrrhaptes paradoxus (Pallas's sandgrouse) ORGANISM Syrrhaptes paradoxus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Ciconiiformes; Pteroclidae; Syrrhaptes. REFERENCE 1 (bases 1 to 215209) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 215209) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (25-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Syrrhaptes paradoxus whole genome shotgun (WGS) project has the project accession VZTO00000000. This version of the project (01) has the accession number VZTO01000000, and consists of sequences VZTO01000001-VZTO01215209. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 65x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..215209 /organism="Syrrhaptes paradoxus" /mol_type="genomic DNA" /isolate="B10K-DU-003-42" /specimen_voucher="USNM:586725" /db_xref="taxon:302527" /sex="male" /tissue_type="mixed tissue sample" /country="Mongolia" /lat_lon="43.03 N 102.10 E" /collection_date="31-May-1997" WGS VZTO01000001-VZTO01215209 // LOCUS VZTQ01000000 51720 rc DNA linear VRT 10-JUL-2020 DEFINITION Pelecanoides urinatrix isolate B10K-DU-012-45, whole genome shotgun sequencing project. ACCESSION VZTQ00000000 VERSION VZTQ00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253911 KEYWORDS WGS. SOURCE Pelecanoides urinatrix ORGANISM Pelecanoides urinatrix Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Procellariiformes; Pelecanoididae; Pelecanoides. REFERENCE 1 (bases 1 to 51720) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 51720) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Pelecanoides urinatrix whole genome shotgun (WGS) project has the project accession VZTQ00000000. This version of the project (01) has the accession number VZTQ01000000, and consists of sequences VZTQ01000001-VZTQ01051720. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 81x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..51720 /organism="Pelecanoides urinatrix" /mol_type="genomic DNA" /isolate="B10K-DU-012-45" /specimen_voucher="UWBM:60517" /db_xref="taxon:37079" /sex="female" /lat_lon="54.49 S 37.07 W" /collection_date="05-Jul-1991" WGS VZTQ01000001-VZTQ01051720 // LOCUS VYZW01000000 121603 rc DNA linear VRT 10-JUL-2020 DEFINITION Balaeniceps rex isolate B10K-DU-012-56, whole genome shotgun sequencing project. ACCESSION VYZW00000000 VERSION VYZW00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253916 KEYWORDS WGS. SOURCE Balaeniceps rex (shoebill) ORGANISM Balaeniceps rex Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Ciconiiformes; Balaenicipitidae; Balaeniceps. REFERENCE 1 (bases 1 to 121603) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 121603) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Balaeniceps rex whole genome shotgun (WGS) project has the project accession VYZW00000000. This version of the project (01) has the accession number VYZW01000000, and consists of sequences VYZW01000001-VYZW01121603. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 49x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..121603 /organism="Balaeniceps rex" /mol_type="genomic DNA" /isolate="B10K-DU-012-56" /specimen_voucher="USNM:647255" /db_xref="taxon:33584" /sex="female" /collection_date="30-Dec-2009" WGS VYZW01000001-VYZW01121603 // LOCUS VYZV01000000 85775 rc DNA linear VRT 10-JUL-2020 DEFINITION Pandion haliaetus isolate B10K-DU-012-58, whole genome shotgun sequencing project. ACCESSION VYZV00000000 VERSION VYZV00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253917 KEYWORDS WGS. SOURCE Pandion haliaetus ORGANISM Pandion haliaetus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Accipitriformes; Pandionidae; Pandion. REFERENCE 1 (bases 1 to 85775) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 85775) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Pandion haliaetus whole genome shotgun (WGS) project has the project accession VYZV00000000. This version of the project (01) has the accession number VYZV01000000, and consists of sequences VYZV01000001-VYZV01085775. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 46x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..85775 /organism="Pandion haliaetus" /mol_type="genomic DNA" /isolate="B10K-DU-012-58" /specimen_voucher="CAS:90221" /db_xref="taxon:56262" /sex="male" /tissue_type="muscle, liver" /country="USA" /lat_lon="39.45 N 123.78 W" /collection_date="13-Jun-2001" WGS VYZV01000001-VYZV01085775 // LOCUS VYZS01000000 352748 rc DNA linear VRT 10-JUL-2020 DEFINITION Neodrepanis coruscans isolate B10K-DU-002-79, whole genome shotgun sequencing project. ACCESSION VYZS00000000 VERSION VYZS00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253874 KEYWORDS WGS. SOURCE Neodrepanis coruscans (wattled asity) ORGANISM Neodrepanis coruscans Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Philepittidae; Neodrepanis. REFERENCE 1 (bases 1 to 352748) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 352748) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Neodrepanis coruscans whole genome shotgun (WGS) project has the project accession VYZS00000000. This version of the project (01) has the accession number VYZS01000000, and consists of sequences VYZS01000001-VYZS01352748. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 46x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..352748 /organism="Neodrepanis coruscans" /mol_type="genomic DNA" /isolate="B10K-DU-002-79" /specimen_voucher="FMNH:AVES:345711" /db_xref="taxon:254563" /sex="male" /country="Madagascar" /lat_lon="24.00 S 46.80 E" /collection_date="25-Nov-1989" WGS VYZS01000001-VYZS01352748 // LOCUS VZTP01000000 75221 rc DNA linear VRT 10-JUL-2020 DEFINITION Prunella fulvescens isolate B10K-DU-012-46, whole genome shotgun sequencing project. ACCESSION VZTP00000000 VERSION VZTP00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253912 KEYWORDS WGS. SOURCE Prunella fulvescens (Brown accentor) ORGANISM Prunella fulvescens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Passeridae; Prunella. REFERENCE 1 (bases 1 to 75221) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 75221) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Prunella fulvescens whole genome shotgun (WGS) project has the project accession VZTP00000000. This version of the project (01) has the accession number VZTP01000000, and consists of sequences VZTP01000001-VZTP01075221. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 49x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..75221 /organism="Prunella fulvescens" /mol_type="genomic DNA" /isolate="B10K-DU-012-46" /specimen_voucher="UWBM:57993" /db_xref="taxon:670355" /sex="female" /country="Mongolia" /lat_lon="47.88 N 98.88 E" /collection_date="08-Jun-1997" WGS VZTP01000001-VZTP01075221 // LOCUS VYZX01000000 70974 rc DNA linear VRT 10-JUL-2020 DEFINITION Brachypteracias leptosomus isolate B10K-DU-012-52, whole genome shotgun sequencing project. ACCESSION VYZX00000000 VERSION VYZX00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253914 KEYWORDS WGS. SOURCE Brachypteracias leptosomus (short-legged ground-roller) ORGANISM Brachypteracias leptosomus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Coraciiformes; Brachypteraciidae; Brachypteracias. REFERENCE 1 (bases 1 to 70974) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 70974) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Brachypteracias leptosomus whole genome shotgun (WGS) project has the project accession VYZX00000000. This version of the project (01) has the accession number VYZX01000000, and consists of sequences VYZX01000001-VYZX01070974. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 62x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..70974 /organism="Brachypteracias leptosomus" /mol_type="genomic DNA" /isolate="B10K-DU-012-52" /specimen_voucher="FMNH:AVES:345686" /db_xref="taxon:135165" /sex="male" /country="Madagascar" /lat_lon="24.00 S 46.80 E" /collection_date="25-Nov-1989" WGS VYZX01000001-VYZX01070974 // LOCUS VZTN01000000 89074 rc DNA linear VRT 10-JUL-2020 DEFINITION Erpornis zantholeuca isolate B10K-DU-002-58, whole genome shotgun sequencing project. ACCESSION VZTN00000000 VERSION VZTN00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253868 KEYWORDS WGS. SOURCE Erpornis zantholeuca ORGANISM Erpornis zantholeuca Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Timaliidae; Erpornis. REFERENCE 1 (bases 1 to 89074) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 89074) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Erpornis zantholeuca whole genome shotgun (WGS) project has the project accession VZTN00000000. This version of the project (01) has the accession number VZTN01000000, and consists of sequences VZTN01000001-VZTN01089074. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 45x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..89074 /organism="Erpornis zantholeuca" /mol_type="genomic DNA" /isolate="B10K-DU-002-58" /specimen_voucher="LSUMZ:Ornithology:B51177" /db_xref="taxon:1112836" /sex="female" /tissue_type="muscle" /country="Malaysia" /lat_lon="4.46 N 117.91 E" /collection_date="04-Feb-2005" WGS VZTN01000001-VZTN01089074 // LOCUS VYZT01000000 126485 rc DNA linear VRT 10-JUL-2020 DEFINITION Pomatostomus ruficeps isolate B10K-DU-002-71, whole genome shotgun sequencing project. ACCESSION VYZT00000000 VERSION VYZT00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253873 KEYWORDS WGS. SOURCE Pomatostomus ruficeps (chestnut-crowned babbler) ORGANISM Pomatostomus ruficeps Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Timaliidae; Pomatostomus. REFERENCE 1 (bases 1 to 126485) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 126485) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Pomatostomus ruficeps whole genome shotgun (WGS) project has the project accession VYZT00000000. This version of the project (01) has the accession number VYZT01000000, and consists of sequences VYZT01000001-VYZT01126485. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 43x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..126485 /organism="Pomatostomus ruficeps" /mol_type="genomic DNA" /isolate="B10K-DU-002-71" /specimen_voucher="LSUMZ:Ornithology:B23408" /db_xref="taxon:9176" /tissue_type="muscle" /country="Australia" WGS VYZT01000001-VYZT01126485 // LOCUS VYZR01000000 388344 rc DNA linear VRT 10-JUL-2020 DEFINITION Oxylabes madagascariensis isolate B10K-DU-002-81, whole genome shotgun sequencing project. ACCESSION VYZR00000000 VERSION VYZR00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253875 KEYWORDS WGS. SOURCE Oxylabes madagascariensis (white-throated Oxylabes) ORGANISM Oxylabes madagascariensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Timaliidae; Oxylabes. REFERENCE 1 (bases 1 to 388344) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 388344) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Oxylabes madagascariensis whole genome shotgun (WGS) project has the project accession VYZR00000000. This version of the project (01) has the accession number VYZR01000000, and consists of sequences VYZR01000001-VYZR01388344. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 40x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..388344 /organism="Oxylabes madagascariensis" /mol_type="genomic DNA" /isolate="B10K-DU-002-81" /specimen_voucher="FMNH:AVES:352915" /db_xref="taxon:98144" /sex="female" /country="Madagascar" /lat_lon="24.00 S 47.37 E" /collection_date="01-Nov-1990" WGS VYZR01000001-VYZR01388344 // LOCUS VYZP01000000 214600 rc DNA linear VRT 10-JUL-2020 DEFINITION Hypocryptadius cinnamomeus isolate B10K-DU-002-83, whole genome shotgun sequencing project. ACCESSION VYZP00000000 VERSION VYZP00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253877 KEYWORDS WGS. SOURCE Hypocryptadius cinnamomeus ORGANISM Hypocryptadius cinnamomeus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Zosteropidae; Hypocryptadius. REFERENCE 1 (bases 1 to 214600) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 214600) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (11-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Hypocryptadius cinnamomeus whole genome shotgun (WGS) project has the project accession VYZP00000000. This version of the project (01) has the accession number VYZP01000000, and consists of sequences VYZP01000001-VYZP01214600. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 53x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..214600 /organism="Hypocryptadius cinnamomeus" /mol_type="genomic DNA" /isolate="B10K-DU-002-83" /specimen_voucher="FMNH:AVES:357649" /db_xref="taxon:589841" /sex="male" /country="Philippines" /lat_lon="8.00 N 123.75 E" /collection_date="25-Apr-1992" WGS VYZP01000001-VYZP01214600 // LOCUS VWYP01000000 60582 rc DNA linear VRT 10-JUL-2020 DEFINITION Pycnonotus jocosus isolate B10K-DU-002-42, whole genome shotgun sequencing project. ACCESSION VWYP00000000 VERSION VWYP00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253855 KEYWORDS WGS. SOURCE Pycnonotus jocosus (red-whiskered bulbul) ORGANISM Pycnonotus jocosus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Pycnonotidae; Pycnonotus. REFERENCE 1 (bases 1 to 60582) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 60582) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Pycnonotus jocosus whole genome shotgun (WGS) project has the project accession VWYP00000000. This version of the project (01) has the accession number VWYP01000000, and consists of sequences VWYP01000001-VWYP01060582. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 48x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..60582 /organism="Pycnonotus jocosus" /mol_type="genomic DNA" /isolate="B10K-DU-002-42" /specimen_voucher="USNM:643381" /db_xref="taxon:182897" /sex="female" /tissue_type="muscle" /country="USA" /lat_lon="21.32 N 157.95 W" /collection_date="29-Mar-2010" WGS VWYP01000001-VWYP01060582 // LOCUS VWYK01000000 249644 rc DNA linear VRT 10-JUL-2020 DEFINITION Semnornis frantzii isolate B10K-DU-001-42, whole genome shotgun sequencing project. ACCESSION VWYK00000000 VERSION VWYK00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253798 KEYWORDS WGS. SOURCE Semnornis frantzii ORGANISM Semnornis frantzii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Piciformes; Ramphastidae; Semnornis. REFERENCE 1 (bases 1 to 249644) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 249644) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Semnornis frantzii whole genome shotgun (WGS) project has the project accession VWYK00000000. This version of the project (01) has the accession number VWYK01000000, and consists of sequences VWYK01000001-VWYK01249644. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 46x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..249644 /organism="Semnornis frantzii" /mol_type="genomic DNA" /isolate="B10K-DU-001-42" /specimen_voucher="USNM:613303" /db_xref="taxon:91796" /sex="male" /tissue_type="muscle" /country="Panama" /lat_lon="8.64 N 82.21 W" /collection_date="07-May-1990" WGS VWYK01000001-VWYK01249644 // LOCUS VWYO01000000 50491 rc DNA linear VRT 10-JUL-2020 DEFINITION Rhadina sibilatrix isolate B10K-DU-002-26, whole genome shotgun sequencing project. ACCESSION VWYO00000000 VERSION VWYO00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253847 KEYWORDS WGS. SOURCE Rhadina sibilatrix ORGANISM Rhadina sibilatrix Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Phylloscopidae; Rhadina. REFERENCE 1 (bases 1 to 50491) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 50491) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Rhadina sibilatrix whole genome shotgun (WGS) project has the project accession VWYO00000000. This version of the project (01) has the accession number VWYO01000000, and consists of sequences VWYO01000001-VWYO01050491. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 50x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..50491 /organism="Rhadina sibilatrix" /mol_type="genomic DNA" /isolate="B10K-DU-002-26" /specimen_voucher="USNM:640397" /db_xref="taxon:2585818" /sex="female" /tissue_type="muscle" /country="Russia" /lat_lon="44.19 N 40.08 E" /collection_date="10-Jun-2004" WGS VWYO01000001-VWYO01050491 // LOCUS VWYN01000000 51503 rc DNA linear VRT 10-JUL-2020 DEFINITION Hippolais icterina isolate B10K-DU-002-18, whole genome shotgun sequencing project. ACCESSION VWYN00000000 VERSION VWYN00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253841 KEYWORDS WGS. SOURCE Hippolais icterina (icterine warbler) ORGANISM Hippolais icterina Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Sylviidae; Acrocephalinae; Hippolais. REFERENCE 1 (bases 1 to 51503) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 51503) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Hippolais icterina whole genome shotgun (WGS) project has the project accession VWYN00000000. This version of the project (01) has the accession number VWYN01000000, and consists of sequences VWYN01000001-VWYN01051503. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 49x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..51503 /organism="Hippolais icterina" /mol_type="genomic DNA" /isolate="B10K-DU-002-18" /specimen_voucher="USNM:637402" /db_xref="taxon:68497" /sex="female" /tissue_type="muscle" /country="Greece" /lat_lon="39.13 N 26.22 E" /collection_date="13-May-2006" WGS VWYN01000001-VWYN01051503 // LOCUS VWYL01000000 58495 rc DNA linear VRT 10-JUL-2020 DEFINITION Zosterops hypoxanthus isolate B10K-DU-001-36, whole genome shotgun sequencing project. ACCESSION VWYL00000000 VERSION VWYL00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253794 KEYWORDS WGS. SOURCE Zosterops hypoxanthus ORGANISM Zosterops hypoxanthus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Zosteropidae; Zosterops. REFERENCE 1 (bases 1 to 58495) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 58495) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Zosterops hypoxanthus whole genome shotgun (WGS) project has the project accession VWYL00000000. This version of the project (01) has the accession number VWYL01000000, and consists of sequences VWYL01000001-VWYL01058495. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 47x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..58495 /organism="Zosterops hypoxanthus" /mol_type="genomic DNA" /isolate="B10K-DU-001-36" /specimen_voucher="USNM:608699" /db_xref="taxon:2485327" /sex="female" /tissue_type="muscle" /country="Papua New Guinea" /lat_lon="4.45 S 152.93 E" /collection_date="30-Jan-1994" WGS VWYL01000001-VWYL01058495 // LOCUS VWYM01000000 62831 rc DNA linear VRT 10-JUL-2020 DEFINITION Cinclus mexicanus isolate B10K-DU-001-77, whole genome shotgun sequencing project. ACCESSION VWYM00000000 VERSION VWYM00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253825 KEYWORDS WGS. SOURCE Cinclus mexicanus ORGANISM Cinclus mexicanus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Cinclidae; Cinclus. REFERENCE 1 (bases 1 to 62831) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 62831) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Cinclus mexicanus whole genome shotgun (WGS) project has the project accession VWYM00000000. This version of the project (01) has the accession number VWYM01000000, and consists of sequences VWYM01000001-VWYM01062831. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 46x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..62831 /organism="Cinclus mexicanus" /mol_type="genomic DNA" /isolate="B10K-DU-001-77" /specimen_voucher="USNM:630613" /db_xref="taxon:161649" /sex="female" /tissue_type="muscle" /country="USA" /lat_lon="47.03 N 120.94 W" /collection_date="21-Aug-2001" WGS VWYM01000001-VWYM01062831 // LOCUS VWYJ01000000 61483 rc DNA linear VRT 10-JUL-2020 DEFINITION Sagittarius serpentarius isolate B10K-DU-011-38, whole genome shotgun sequencing project. ACCESSION VWYJ00000000 VERSION VWYJ00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253901 KEYWORDS WGS. SOURCE Sagittarius serpentarius ORGANISM Sagittarius serpentarius Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Accipitriformes; Sagittariidae; Sagittarius. REFERENCE 1 (bases 1 to 61483) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 61483) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Sagittarius serpentarius whole genome shotgun (WGS) project has the project accession VWYJ00000000. This version of the project (01) has the accession number VWYJ01000000, and consists of sequences VWYJ01000001-VWYJ01061483. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 39x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..61483 /organism="Sagittarius serpentarius" /mol_type="genomic DNA" /isolate="B10K-DU-011-38" /specimen_voucher="USNM:587866" /db_xref="taxon:56258" /sex="male" /tissue_type="muscle" /collection_date="27-Dec-1998" WGS VWYJ01000001-VWYJ01061483 // LOCUS VWYG01000000 55068 rc DNA linear VRT 10-JUL-2020 DEFINITION Nyctibius grandis isolate B10K-DU-001-56, whole genome shotgun sequencing project. ACCESSION VWYG00000000 VERSION VWYG00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253808 KEYWORDS WGS. SOURCE Nyctibius grandis ORGANISM Nyctibius grandis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Caprimulgimorphae; Caprimulgiformes; Nyctibiidae; Nyctibius. REFERENCE 1 (bases 1 to 55068) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 55068) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Nyctibius grandis whole genome shotgun (WGS) project has the project accession VWYG00000000. This version of the project (01) has the accession number VWYG01000000, and consists of sequences VWYG01000001-VWYG01055068. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 44x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..55068 /organism="Nyctibius grandis" /mol_type="genomic DNA" /isolate="B10K-DU-001-56" /specimen_voucher="USNM:623085" /db_xref="taxon:48427" /sex="female" /tissue_type="muscle" /country="Guyana" /lat_lon="6.30 N 58.22 W" /collection_date="15-Oct-2000" WGS VWYG01000001-VWYG01055068 // LOCUS VWYF01000000 56227 rc DNA linear VRT 10-JUL-2020 DEFINITION Quiscalus mexicanus isolate B10K-DU-001-31, whole genome shotgun sequencing project. ACCESSION VWYF00000000 VERSION VWYF00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253789 KEYWORDS WGS. SOURCE Quiscalus mexicanus (Great-tailed grackle) ORGANISM Quiscalus mexicanus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Icteridae; Quiscalus. REFERENCE 1 (bases 1 to 56227) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 56227) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Quiscalus mexicanus whole genome shotgun (WGS) project has the project accession VWYF00000000. This version of the project (01) has the accession number VWYF01000000, and consists of sequences VWYF01000001-VWYF01056227. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 54x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..56227 /organism="Quiscalus mexicanus" /mol_type="genomic DNA" /isolate="B10K-DU-001-31" /specimen_voucher="USNM:608021" /db_xref="taxon:64278" /sex="female" /tissue_type="muscle" /country="Panama" /lat_lon="9.08 N 81.85 W" /collection_date="18-Apr-1990" WGS VWYF01000001-VWYF01056227 // LOCUS VWYD01000000 65695 rc DNA linear VRT 10-JUL-2020 DEFINITION Catharus fuscescens isolate B10K-DU-001-17, whole genome shotgun sequencing project. ACCESSION VWYD00000000 VERSION VWYD00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253775 KEYWORDS WGS. SOURCE Catharus fuscescens (veery) ORGANISM Catharus fuscescens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Turdidae; Catharus. REFERENCE 1 (bases 1 to 65695) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 65695) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Catharus fuscescens whole genome shotgun (WGS) project has the project accession VWYD00000000. This version of the project (01) has the accession number VWYD01000000, and consists of sequences VWYD01000001-VWYD01065695. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 45x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..65695 /organism="Catharus fuscescens" /mol_type="genomic DNA" /isolate="B10K-DU-001-17" /specimen_voucher="USNM:587444" /db_xref="taxon:159581" /sex="female" /tissue_type="muscle" /country="USA" /lat_lon="8.59 N 79.64 W" /collection_date="09-Jun-1998" WGS VWYD01000001-VWYD01065695 // LOCUS VWYE01000000 65586 rc DNA linear VRT 10-JUL-2020 DEFINITION Alaudala cheleensis isolate B10K-DU-001-15, whole genome shotgun sequencing project. ACCESSION VWYE00000000 VERSION VWYE00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253773 KEYWORDS WGS. SOURCE Alaudala cheleensis (Asian short-toed lark) ORGANISM Alaudala cheleensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Alaudidae; Alaudala. REFERENCE 1 (bases 1 to 65586) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 65586) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Alaudala cheleensis whole genome shotgun (WGS) project has the project accession VWYE00000000. This version of the project (01) has the accession number VWYE01000000, and consists of sequences VWYE01000001-VWYE01065586. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 81x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..65586 /organism="Alaudala cheleensis" /mol_type="genomic DNA" /isolate="B10K-DU-001-15" /specimen_voucher="USNM:586677" /db_xref="taxon:670337" /sex="female" /tissue_type="muscle" /country="Mongolia" /lat_lon="44.10 N 100.93 E" /collection_date="02-Jun-1997" WGS VWYE01000001-VWYE01065586 // LOCUS VWYI01000000 97620 rc DNA linear VRT 10-JUL-2020 DEFINITION Anthoscopus minutus isolate B10K-DU-011-42, whole genome shotgun sequencing project. ACCESSION VWYI00000000 VERSION VWYI00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253902 KEYWORDS WGS. SOURCE Anthoscopus minutus ORGANISM Anthoscopus minutus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Paridae; Anthoscopus. REFERENCE 1 (bases 1 to 97620) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 97620) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Anthoscopus minutus whole genome shotgun (WGS) project has the project accession VWYI00000000. This version of the project (01) has the accession number VWYI01000000, and consists of sequences VWYI01000001-VWYI01097620. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 55x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..97620 /organism="Anthoscopus minutus" /mol_type="genomic DNA" /isolate="B10K-DU-011-42" /specimen_voucher="USNM:642205" /db_xref="taxon:156561" /tissue_type="muscle" /country="Namibia" /lat_lon="25.11 S 19.95 E" /collection_date="11-Aug-2009" WGS VWYI01000001-VWYI01097620 // LOCUS WBNO01000000 52207 rc DNA linear VRT 10-JUL-2020 DEFINITION Peucedramus taeniatus isolate B10K-DU-002-52, whole genome shotgun sequencing project. ACCESSION WBNO00000000 VERSION WBNO00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253863 KEYWORDS WGS. SOURCE Peucedramus taeniatus (olive warbler) ORGANISM Peucedramus taeniatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Fringillidae; Peucedraminae; Peucedramus. REFERENCE 1 (bases 1 to 52207) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 52207) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (29-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Peucedramus taeniatus whole genome shotgun (WGS) project has the project accession WBNO00000000. This version of the project (01) has the accession number WBNO01000000, and consists of sequences WBNO01000001-WBNO01052207. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 51x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..52207 /organism="Peucedramus taeniatus" /mol_type="genomic DNA" /isolate="B10K-DU-002-52" /specimen_voucher="LSUMZ:Ornithology:B50360" /db_xref="taxon:135441" /sex="female" /tissue_type="muscle" /country="USA" /collection_date="26-Jul-2003" WGS WBNO01000001-WBNO01052207 // LOCUS WBNM01000000 95483 rc DNA linear VRT 10-JUL-2020 DEFINITION Ramphastos sulfuratus isolate B10K-DU-001-30, whole genome shotgun sequencing project. ACCESSION WBNM00000000 VERSION WBNM00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253788 KEYWORDS WGS. SOURCE Ramphastos sulfuratus ORGANISM Ramphastos sulfuratus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Piciformes; Ramphastidae; Ramphastos. REFERENCE 1 (bases 1 to 95483) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 95483) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (29-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Ramphastos sulfuratus whole genome shotgun (WGS) project has the project accession WBNM00000000. This version of the project (01) has the accession number WBNM01000000, and consists of sequences WBNM01000001-WBNM01095483. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 76x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..95483 /organism="Ramphastos sulfuratus" /mol_type="genomic DNA" /isolate="B10K-DU-001-30" /specimen_voucher="USNM:607736" /db_xref="taxon:322582" /sex="female" /tissue_type="muscle" /country="Panama" /lat_lon="9.15 N 82.06 W" /collection_date="05-Apr-1990" WGS WBNM01000001-WBNM01095483 // LOCUS WBNN01000000 93444 rc DNA linear VRT 10-JUL-2020 DEFINITION Vidua macroura isolate B10K-DU-002-50, whole genome shotgun sequencing project. ACCESSION WBNN00000000 VERSION WBNN00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253861 KEYWORDS WGS. SOURCE Vidua macroura ORGANISM Vidua macroura Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Viduinae; Vidua. REFERENCE 1 (bases 1 to 93444) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 93444) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (29-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Vidua macroura whole genome shotgun (WGS) project has the project accession WBNN00000000. This version of the project (01) has the accession number WBNN01000000, and consists of sequences WBNN01000001-WBNN01093444. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 47x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..93444 /organism="Vidua macroura" /mol_type="genomic DNA" /isolate="B10K-DU-002-50" /specimen_voucher="LSUMZ:Ornithology:B39306" /db_xref="taxon:187451" /sex="female" /tissue_type="muscle" /country="Ghana" /lat_lon="8.78 N 1.41 W" /collection_date="07-Feb-2000" WGS WBNN01000001-WBNN01093444 // LOCUS WBNP01000000 57198 rc DNA linear VRT 10-JUL-2020 DEFINITION Passerina amoena isolate OUT-0017, whole genome shotgun sequencing project. ACCESSION WBNP00000000 VERSION WBNP00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253987 KEYWORDS WGS. SOURCE Passerina amoena ORGANISM Passerina amoena Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Fringillidae; Emberizinae; Cardinalini; Passerina. REFERENCE 1 (bases 1 to 57198) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 57198) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (29-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Passerina amoena whole genome shotgun (WGS) project has the project accession WBNP00000000. This version of the project (01) has the accession number WBNP01000000, and consists of sequences WBNP01000001-WBNP01057198. ##Genome-Assembly-Data-START## Assembly Method :: SuperNova v. 1.2 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 115x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..57198 /organism="Passerina amoena" /mol_type="genomic DNA" /isolate="OUT-0017" /db_xref="taxon:142471" /sex="male" /tissue_type="muscle, pectoral" /country="USA" /lat_lon="46.99 N 119.68 W" /collection_date="06-Jun-2012" WGS WBNP01000001-WBNP01057198 // LOCUS WEZZ01000000 91329 rc DNA linear VRT 10-JUL-2020 DEFINITION Chloropsis cyanopogon isolate B10K-DU-002-57, whole genome shotgun sequencing project. ACCESSION WEZZ00000000 VERSION WEZZ00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253867 KEYWORDS WGS. SOURCE Chloropsis cyanopogon ORGANISM Chloropsis cyanopogon Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Irenidae; Chloropsis. REFERENCE 1 (bases 1 to 91329) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 91329) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (12-OCT-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Chloropsis cyanopogon whole genome shotgun (WGS) project has the project accession WEZZ00000000. This version of the project (01) has the accession number WEZZ01000000, and consists of sequences WEZZ01000001-WEZZ01091329. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 65x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..91329 /organism="Chloropsis cyanopogon" /mol_type="genomic DNA" /isolate="B10K-DU-002-57" /specimen_voucher="LSUMZ:Ornithology:B47034" /db_xref="taxon:1218682" /sex="female" /tissue_type="muscle" /country="Malaysia" /lat_lon="6.29 N 116.71 E" /collection_date="22-Jan-2004" WGS WEZZ01000001-WEZZ01091329 // LOCUS VXBY01000000 17003 rc DNA linear VRT 10-JUL-2020 DEFINITION Leiothrix lutea isolate B10K-DU-002-43, whole genome shotgun sequencing project. ACCESSION VXBY00000000 VERSION VXBY00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253856 KEYWORDS WGS. SOURCE Leiothrix lutea (red-billed leiothrix) ORGANISM Leiothrix lutea Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Leiothrichidae; Leiothrix. REFERENCE 1 (bases 1 to 17003) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 17003) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Leiothrix lutea whole genome shotgun (WGS) project has the project accession VXBY00000000. This version of the project (01) has the accession number VXBY01000000, and consists of sequences VXBY01000001-VXBY01017003. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 70x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..17003 /organism="Leiothrix lutea" /mol_type="genomic DNA" /isolate="B10K-DU-002-43" /specimen_voucher="USNM:643454" /db_xref="taxon:36275" /sex="male" /tissue_type="muscle" /country="USA" /lat_lon="21.36 N 157.72 W" /collection_date="31-Mar-2010" WGS VXBY01000001-VXBY01017003 // LOCUS VXBW01000000 15363 rc DNA linear VRT 10-JUL-2020 DEFINITION Thinocorus orbignyianus isolate B10K-DU-002-47, whole genome shotgun sequencing project. ACCESSION VXBW00000000 VERSION VXBW00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253858 KEYWORDS WGS. SOURCE Thinocorus orbignyianus ORGANISM Thinocorus orbignyianus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Ciconiiformes; Thinocoridae; Thinocorus. REFERENCE 1 (bases 1 to 15363) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 15363) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Thinocorus orbignyianus whole genome shotgun (WGS) project has the project accession VXBW00000000. This version of the project (01) has the accession number VXBW01000000, and consists of sequences VXBW01000001-VXBW01015363. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 40x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..15363 /organism="Thinocorus orbignyianus" /mol_type="genomic DNA" /isolate="B10K-DU-002-47" /specimen_voucher="USNM:645613" /db_xref="taxon:161742" /sex="female" /tissue_type="muscle" /country="Argentina" /lat_lon="26.73 S 65.77 W" /collection_date="02-Dec-1996" WGS VXBW01000001-VXBW01015363 // LOCUS VXBZ01000000 31355 rc DNA linear VRT 10-JUL-2020 DEFINITION Heliornis fulica isolate B10K-DU-001-55, whole genome shotgun sequencing project. ACCESSION VXBZ00000000 VERSION VXBZ00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253807 KEYWORDS WGS. SOURCE Heliornis fulica (sungrebe) ORGANISM Heliornis fulica Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Heliornithidae; Heliornis. REFERENCE 1 (bases 1 to 31355) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 31355) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Heliornis fulica whole genome shotgun (WGS) project has the project accession VXBZ00000000. This version of the project (01) has the accession number VXBZ01000000, and consists of sequences VXBZ01000001-VXBZ01031355. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 43x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..31355 /organism="Heliornis fulica" /mol_type="genomic DNA" /isolate="B10K-DU-001-55" /specimen_voucher="USNM:623068" /db_xref="taxon:54369" /sex="female" /tissue_type="muscle" /country="Guyana" /lat_lon="6.63 N 58.17 W" /collection_date="06-Oct-2000" WGS VXBZ01000001-VXBZ01031355 // LOCUS VXBP01000000 21664 rc DNA linear VRT 10-JUL-2020 DEFINITION Rhinopomastus cyanomelas isolate B10K-DU-002-35, whole genome shotgun sequencing project. ACCESSION VXBP00000000 VERSION VXBP00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253851 KEYWORDS WGS. SOURCE Rhinopomastus cyanomelas (common scimitar-bill) ORGANISM Rhinopomastus cyanomelas Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Upupiformes; Rhinopomastidae; Rhinopomastus. REFERENCE 1 (bases 1 to 21664) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 21664) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Rhinopomastus cyanomelas whole genome shotgun (WGS) project has the project accession VXBP00000000. This version of the project (01) has the accession number VXBP01000000, and consists of sequences VXBP01000001-VXBP01021664. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 51x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..21664 /organism="Rhinopomastus cyanomelas" /mol_type="genomic DNA" /isolate="B10K-DU-002-35" /specimen_voucher="USNM:642342" /db_xref="taxon:113115" /sex="female" /tissue_type="muscle" /country="Namibia" /lat_lon="25.11 S 19.95 E" /collection_date="11-Aug-2009" WGS VXBP01000001-VXBP01021664 // LOCUS VXBK01000000 23765 rc DNA linear VRT 10-JUL-2020 DEFINITION Himantopus himantopus isolate B10K-DU-002-13, whole genome shotgun sequencing project. ACCESSION VXBK00000000 VERSION VXBK00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253837 KEYWORDS WGS. SOURCE Himantopus himantopus (black-winged stilt) ORGANISM Himantopus himantopus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Recurvirostridae; Himantopus. REFERENCE 1 (bases 1 to 23765) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 23765) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Himantopus himantopus whole genome shotgun (WGS) project has the project accession VXBK00000000. This version of the project (01) has the accession number VXBK01000000, and consists of sequences VXBK01000001-VXBK01023765. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 39x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..23765 /organism="Himantopus himantopus" /mol_type="genomic DNA" /isolate="B10K-DU-002-13" /specimen_voucher="USNM:635762" /db_xref="taxon:225398" /sex="female" /tissue_type="muscle" /country="Uruguay" /lat_lon="30.15 S 57.06 W" /collection_date="06-Nov-2005" WGS VXBK01000001-VXBK01023765 // LOCUS VXBQ01000000 28278 rc DNA linear VRT 10-JUL-2020 DEFINITION Phainopepla nitens isolate B10K-DU-002-32, whole genome shotgun sequencing project. ACCESSION VXBQ00000000 VERSION VXBQ00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253850 KEYWORDS WGS. SOURCE Phainopepla nitens ORGANISM Phainopepla nitens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Bombycillidae; Phainopepla. REFERENCE 1 (bases 1 to 28278) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 28278) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Phainopepla nitens whole genome shotgun (WGS) project has the project accession VXBQ00000000. This version of the project (01) has the accession number VXBQ01000000, and consists of sequences VXBQ01000001-VXBQ01028278. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 43x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..28278 /organism="Phainopepla nitens" /mol_type="genomic DNA" /isolate="B10K-DU-002-32" /specimen_voucher="USNM:642003" /db_xref="taxon:161653" /sex="female" /tissue_type="muscle" /country="USA" /lat_lon="30.55 N 103.78 W" /collection_date="06-May-2009" WGS VXBQ01000001-VXBQ01028278 // LOCUS VXBX01000000 17518 rc DNA linear VRT 10-JUL-2020 DEFINITION Scytalopus superciliaris isolate B10K-DU-002-46, whole genome shotgun sequencing project. ACCESSION VXBX00000000 VERSION VXBX00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253857 KEYWORDS WGS. SOURCE Scytalopus superciliaris ORGANISM Scytalopus superciliaris Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Rhinocryptidae; Scytalopus. REFERENCE 1 (bases 1 to 17518) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 17518) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Scytalopus superciliaris whole genome shotgun (WGS) project has the project accession VXBX00000000. This version of the project (01) has the accession number VXBX01000000, and consists of sequences VXBX01000001-VXBX01017518. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 43x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..17518 /organism="Scytalopus superciliaris" /mol_type="genomic DNA" /isolate="B10K-DU-002-46" /specimen_voucher="USNM:645480" /db_xref="taxon:312124" /sex="female" /tissue_type="muscle" /country="Argentina" /lat_lon="26.95 S 65.67 W" /collection_date="09-Nov-1996" WGS VXBX01000001-VXBX01017518 // LOCUS VXBV01000000 13655 rc DNA linear VRT 10-JUL-2020 DEFINITION Certhia brachydactyla isolate B10K-DU-002-20, whole genome shotgun sequencing project. ACCESSION VXBV00000000 VERSION VXBV00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253843 KEYWORDS WGS. SOURCE Certhia brachydactyla (short-toed tree-creeper) ORGANISM Certhia brachydactyla Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Certhiidae; Certhiinae; Certhia. REFERENCE 1 (bases 1 to 13655) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 13655) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Certhia brachydactyla whole genome shotgun (WGS) project has the project accession VXBV00000000. This version of the project (01) has the accession number VXBV01000000, and consists of sequences VXBV01000001-VXBV01013655. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 49x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..13655 /organism="Certhia brachydactyla" /mol_type="genomic DNA" /isolate="B10K-DU-002-20" /specimen_voucher="USNM:637436" /db_xref="taxon:73330" /sex="male" /tissue_type="muscle" /country="Greece" /lat_lon="39.07 N 26.38 E" /collection_date="16-May-2006" WGS VXBV01000001-VXBV01013655 // LOCUS VXBU01000000 32196 rc DNA linear VRT 10-JUL-2020 DEFINITION Bombycilla garrulus isolate B10K-DU-002-23, whole genome shotgun sequencing project. ACCESSION VXBU00000000 VERSION VXBU00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253844 KEYWORDS WGS. SOURCE Bombycilla garrulus ORGANISM Bombycilla garrulus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Bombycillidae; Bombycilla. REFERENCE 1 (bases 1 to 32196) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 32196) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Bombycilla garrulus whole genome shotgun (WGS) project has the project accession VXBU00000000. This version of the project (01) has the accession number VXBU01000000, and consists of sequences VXBU01000001-VXBU01032196. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 50x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..32196 /organism="Bombycilla garrulus" /mol_type="genomic DNA" /isolate="B10K-DU-002-23" /specimen_voucher="USNM:638986" /db_xref="taxon:125297" /sex="female" /tissue_type="muscle" /country="USA" /lat_lon="64.54 N 141.25 W" /collection_date="06-Jul-2007" WGS VXBU01000001-VXBU01032196 // LOCUS VXBS01000000 18111 rc DNA linear VRT 10-JUL-2020 DEFINITION Sitta europaea isolate B10K-DU-002-25, whole genome shotgun sequencing project. ACCESSION VXBS00000000 VERSION VXBS00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253846 KEYWORDS WGS. SOURCE Sitta europaea (wood nuthatch) ORGANISM Sitta europaea Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sittidae; Sitta. REFERENCE 1 (bases 1 to 18111) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 18111) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Sitta europaea whole genome shotgun (WGS) project has the project accession VXBS00000000. This version of the project (01) has the accession number VXBS01000000, and consists of sequences VXBS01000001-VXBS01018111. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 51x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..18111 /organism="Sitta europaea" /mol_type="genomic DNA" /isolate="B10K-DU-002-25" /specimen_voucher="USNM:639762" /db_xref="taxon:50251" /sex="female" /tissue_type="muscle" /country="Russia" /lat_lon="43.94 N 39.48 E" /collection_date="01-Jun-2004" WGS VXBS01000001-VXBS01018111 // LOCUS VXBR01000000 20420 rc DNA linear VRT 10-JUL-2020 DEFINITION Cisticola juncidis isolate B10K-DU-002-30, whole genome shotgun sequencing project. ACCESSION VXBR00000000 VERSION VXBR00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253849 KEYWORDS WGS. SOURCE Cisticola juncidis ORGANISM Cisticola juncidis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Cisticolidae; Cisticola. REFERENCE 1 (bases 1 to 20420) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 20420) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Cisticola juncidis whole genome shotgun (WGS) project has the project accession VXBR00000000. This version of the project (01) has the accession number VXBR01000000, and consists of sequences VXBR01000001-VXBR01020420. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 49x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..20420 /organism="Cisticola juncidis" /mol_type="genomic DNA" /isolate="B10K-DU-002-30" /specimen_voucher="USNM:641819" /db_xref="taxon:52622" /sex="male" /tissue_type="muscle" /country="Japan" /lat_lon="34.14 N 132.23 E" /collection_date="20-Jun-2009" WGS VXBR01000001-VXBR01020420 // LOCUS VXBT01000000 22076 rc DNA linear VRT 10-JUL-2020 DEFINITION Oriolus oriolus isolate B10K-DU-002-24, whole genome shotgun sequencing project. ACCESSION VXBT00000000 VERSION VXBT00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253845 KEYWORDS WGS. SOURCE Oriolus oriolus (Eurasian golden-oriole) ORGANISM Oriolus oriolus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Corvidae; Oriolus. REFERENCE 1 (bases 1 to 22076) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 22076) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Oriolus oriolus whole genome shotgun (WGS) project has the project accession VXBT00000000. This version of the project (01) has the accession number VXBT01000000, and consists of sequences VXBT01000001-VXBT01022076. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 40x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..22076 /organism="Oriolus oriolus" /mol_type="genomic DNA" /isolate="B10K-DU-002-24" /specimen_voucher="USNM:639700" /db_xref="taxon:181099" /sex="female" /tissue_type="muscle" /country="Russia" /lat_lon="45.08 N 36.99 E" /collection_date="24-May-2004" WGS VXBT01000001-VXBT01022076 // LOCUS VXBL01000000 18527 rc DNA linear VRT 10-JUL-2020 DEFINITION Aramus guarauna isolate B10K-DU-002-11, whole genome shotgun sequencing project. ACCESSION VXBL00000000 VERSION VXBL00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253836 KEYWORDS WGS. SOURCE Aramus guarauna (limpkin) ORGANISM Aramus guarauna Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Aramidae; Aramus. REFERENCE 1 (bases 1 to 18527) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 18527) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Aramus guarauna whole genome shotgun (WGS) project has the project accession VXBL00000000. This version of the project (01) has the accession number VXBL01000000, and consists of sequences VXBL01000001-VXBL01018527. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 47x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..18527 /organism="Aramus guarauna" /mol_type="genomic DNA" /isolate="B10K-DU-002-11" /specimen_voucher="USNM:635727" /db_xref="taxon:54356" /sex="female" /tissue_type="muscle" /country="Uruguay" /lat_lon="33.73 S 53.68 W" /collection_date="25-Oct-2005" WGS VXBL01000001-VXBL01018527 // LOCUS VXBM01000000 10795 rc DNA linear VRT 10-JUL-2020 DEFINITION Locustella ochotensis isolate B10K-DU-002-09, whole genome shotgun sequencing project. ACCESSION VXBM00000000 VERSION VXBM00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253834 KEYWORDS WGS. SOURCE Locustella ochotensis (Middendorff's grasshopper-warbler) ORGANISM Locustella ochotensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Locustellidae; Locustella. REFERENCE 1 (bases 1 to 10795) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 10795) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Locustella ochotensis whole genome shotgun (WGS) project has the project accession VXBM00000000. This version of the project (01) has the accession number VXBM01000000, and consists of sequences VXBM01000001-VXBM01010795. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 93x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..10795 /organism="Locustella ochotensis" /mol_type="genomic DNA" /isolate="B10K-DU-002-09" /specimen_voucher="USNM:633298" /db_xref="taxon:187437" /sex="male" /tissue_type="muscle" /country="South Korea" /lat_lon="35.88 N 126.63 E" /collection_date="08-Oct-2004" WGS VXBM01000001-VXBM01010795 // LOCUS VXBB01000000 43982 rc DNA linear VRT 10-JUL-2020 DEFINITION Illadopsis cleaveri isolate B10K-DU-002-01, whole genome shotgun sequencing project. ACCESSION VXBB00000000 VERSION VXBB00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253828 KEYWORDS WGS. SOURCE Illadopsis cleaveri (blackcap illadopsis) ORGANISM Illadopsis cleaveri Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Timaliidae; Illadopsis. REFERENCE 1 (bases 1 to 43982) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 43982) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Illadopsis cleaveri whole genome shotgun (WGS) project has the project accession VXBB00000000. This version of the project (01) has the accession number VXBB01000000, and consists of sequences VXBB01000001-VXBB01043982. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 45x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..43982 /organism="Illadopsis cleaveri" /mol_type="genomic DNA" /isolate="B10K-DU-002-01" /specimen_voucher="USNM:631543" /db_xref="taxon:201329" /sex="female" /tissue_type="muscle" /country="Gabon" /lat_lon="2.59 S 10.23 E" /collection_date="31-Mar-2003" WGS VXBB01000001-VXBB01043982 // LOCUS VXBO01000000 30346 rc DNA linear VRT 10-JUL-2020 DEFINITION Rhinoptilus africanus isolate B10K-DU-002-36, whole genome shotgun sequencing project. ACCESSION VXBO00000000 VERSION VXBO00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253852 KEYWORDS WGS. SOURCE Rhinoptilus africanus (double-banded courser) ORGANISM Rhinoptilus africanus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Glareolidae; Rhinoptilus. REFERENCE 1 (bases 1 to 30346) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 30346) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Rhinoptilus africanus whole genome shotgun (WGS) project has the project accession VXBO00000000. This version of the project (01) has the accession number VXBO01000000, and consists of sequences VXBO01000001-VXBO01030346. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 39x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..30346 /organism="Rhinoptilus africanus" /mol_type="genomic DNA" /isolate="B10K-DU-002-36" /specimen_voucher="USNM:642451" /db_xref="taxon:240209" /sex="female" /tissue_type="muscle" /country="Namibia" /lat_lon="24.77 S 16.98 E" /collection_date="30-Aug-2009" WGS VXBO01000001-VXBO01030346 // LOCUS VXBH01000000 17494 rc DNA linear VRT 10-JUL-2020 DEFINITION Rynchops niger isolate B10K-DU-002-16, whole genome shotgun sequencing project. ACCESSION VXBH00000000 VERSION VXBH00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253840 KEYWORDS WGS. SOURCE Rynchops niger (black skimmer) ORGANISM Rynchops niger Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Laridae; Rynchops. REFERENCE 1 (bases 1 to 17494) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 17494) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Rynchops niger whole genome shotgun (WGS) project has the project accession VXBH00000000. This version of the project (01) has the accession number VXBH01000000, and consists of sequences VXBH01000001-VXBH01017494. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 39x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..17494 /organism="Rynchops niger" /mol_type="genomic DNA" /isolate="B10K-DU-002-16" /specimen_voucher="USNM:637251" /db_xref="taxon:227184" /sex="female" /tissue_type="muscle" /country="Guyana" /lat_lon="2.97 N 58.59 W" /collection_date="22-Aug-2006" WGS VXBH01000001-VXBH01017494 // LOCUS VXBJ01000000 16096 rc DNA linear VRT 10-JUL-2020 DEFINITION Nycticryphes semicollaris isolate B10K-DU-002-14, whole genome shotgun sequencing project. ACCESSION VXBJ00000000 VERSION VXBJ00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253838 KEYWORDS WGS. SOURCE Nycticryphes semicollaris (American painted-snipe) ORGANISM Nycticryphes semicollaris Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Rostratulidae; Nycticryphes. REFERENCE 1 (bases 1 to 16096) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 16096) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Nycticryphes semicollaris whole genome shotgun (WGS) project has the project accession VXBJ00000000. This version of the project (01) has the accession number VXBJ01000000, and consists of sequences VXBJ01000001-VXBJ01016096. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 41x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..16096 /organism="Nycticryphes semicollaris" /mol_type="genomic DNA" /isolate="B10K-DU-002-14" /specimen_voucher="USNM:635776" /db_xref="taxon:227226" /tissue_type="muscle" /country="Uruguay" /lat_lon="30.49 S 57.74 W" /collection_date="11-Nov-2005" WGS VXBJ01000001-VXBJ01016096 // LOCUS VXBG01000000 31497 rc DNA linear VRT 10-JUL-2020 DEFINITION Sylvia borin isolate B10K-DU-002-19, whole genome shotgun sequencing project. ACCESSION VXBG00000000 VERSION VXBG00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253842 KEYWORDS WGS. SOURCE Sylvia borin (garden warbler) ORGANISM Sylvia borin Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Sylviidae; Sylviinae; Sylvia. REFERENCE 1 (bases 1 to 31497) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 31497) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Sylvia borin whole genome shotgun (WGS) project has the project accession VXBG00000000. This version of the project (01) has the accession number VXBG01000000, and consists of sequences VXBG01000001-VXBG01031497. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 48x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..31497 /organism="Sylvia borin" /mol_type="genomic DNA" /isolate="B10K-DU-002-19" /specimen_voucher="USNM:637419" /db_xref="taxon:73324" /sex="female" /tissue_type="muscle" /country="Greece" /lat_lon="39.13 N 26.22 E" /collection_date="14-May-2006" WGS VXBG01000001-VXBG01031497 // LOCUS VXBF01000000 33311 rc DNA linear VRT 10-JUL-2020 DEFINITION Oenanthe oenanthe isolate B10K-DU-001-74, whole genome shotgun sequencing project. ACCESSION VXBF00000000 VERSION VXBF00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253823 KEYWORDS WGS. SOURCE Oenanthe oenanthe (Northern wheatear) ORGANISM Oenanthe oenanthe Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Muscicapidae; Oenanthe. REFERENCE 1 (bases 1 to 33311) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 33311) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Oenanthe oenanthe whole genome shotgun (WGS) project has the project accession VXBF00000000. This version of the project (01) has the accession number VXBF01000000, and consists of sequences VXBF01000001-VXBF01033311. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 52x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..33311 /organism="Oenanthe oenanthe" /mol_type="genomic DNA" /isolate="B10K-DU-001-74" /specimen_voucher="USNM:627655" /db_xref="taxon:279966" /sex="female" /tissue_type="muscle" /country="Iceland" /lat_lon="64.02 N 22.61 W" /collection_date="13-Aug-2001" WGS VXBF01000001-VXBF01033311 // LOCUS VXAZ01000000 18986 rc DNA linear VRT 10-JUL-2020 DEFINITION Gymnorhina tibicen isolate B10K-DU-002-05, whole genome shotgun sequencing project. ACCESSION VXAZ00000000 VERSION VXAZ00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253831 KEYWORDS WGS. SOURCE Gymnorhina tibicen (Australian magpie) ORGANISM Gymnorhina tibicen Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Artamidae; Gymnorhina. REFERENCE 1 (bases 1 to 18986) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 18986) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Gymnorhina tibicen whole genome shotgun (WGS) project has the project accession VXAZ00000000. This version of the project (01) has the accession number VXAZ01000000, and consists of sequences VXAZ01000001-VXAZ01018986. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 51x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..18986 /organism="Gymnorhina tibicen" /mol_type="genomic DNA" /isolate="B10K-DU-002-05" /specimen_voucher="USNM:632142" /db_xref="taxon:9132" /sex="female" /tissue_type="muscle" /country="Australia" /lat_lon="30.08 S 153.20 E" /collection_date="13-Nov-1999" WGS VXAZ01000001-VXAZ01018986 // LOCUS VXBD01000000 28161 rc DNA linear VRT 10-JUL-2020 DEFINITION Indicator maculatus isolate B10K-DU-001-78, whole genome shotgun sequencing project. ACCESSION VXBD00000000 VERSION VXBD00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253826 KEYWORDS WGS. SOURCE Indicator maculatus (spotted honeyguide) ORGANISM Indicator maculatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Piciformes; Indicatoridae; Indicator. REFERENCE 1 (bases 1 to 28161) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 28161) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Indicator maculatus whole genome shotgun (WGS) project has the project accession VXBD00000000. This version of the project (01) has the accession number VXBD01000000, and consists of sequences VXBD01000001-VXBD01028161. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 48x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..28161 /organism="Indicator maculatus" /mol_type="genomic DNA" /isolate="B10K-DU-001-78" /specimen_voucher="USNM:630811" /db_xref="taxon:545262" /sex="female" /tissue_type="muscle" /country="Gabon" /lat_lon="2.34 S 9.59 E" /collection_date="30-Sep-2002" WGS VXBD01000001-VXBD01028161 // LOCUS VXAP01000000 3579 rc DNA linear VRT 10-JUL-2020 DEFINITION Glaucidium brasilianum isolate B10K-DU-008-63, whole genome shotgun sequencing project. ACCESSION VXAP00000000 VERSION VXAP00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253894 KEYWORDS WGS. SOURCE Glaucidium brasilianum (ferruginous pygmy-owl) ORGANISM Glaucidium brasilianum Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Strigiformes; Strigidae; Glaucidium. REFERENCE 1 (bases 1 to 3579) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 3579) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Glaucidium brasilianum whole genome shotgun (WGS) project has the project accession VXAP00000000. This version of the project (01) has the accession number VXAP01000000, and consists of sequences VXAP01000001-VXAP01003579. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 69x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..3579 /organism="Glaucidium brasilianum" /mol_type="genomic DNA" /isolate="B10K-DU-008-63" /specimen_voucher="USNM:632722" /db_xref="taxon:78217" /sex="female" /country="Guyana" /lat_lon="3.88 N 59.58 W" /collection_date="05-Aug-2004" WGS VXAP01000001-VXAP01003579 // LOCUS VXAS01000000 44254 rc DNA linear VRT 10-JUL-2020 DEFINITION Setophaga kirtlandii isolate B10K-DU-001-45, whole genome shotgun sequencing project. ACCESSION VXAS00000000 VERSION VXAS00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253801 KEYWORDS WGS. SOURCE Setophaga kirtlandii (Kirtland's warbler) ORGANISM Setophaga kirtlandii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Parulidae; Setophaga. REFERENCE 1 (bases 1 to 44254) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 44254) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Setophaga kirtlandii whole genome shotgun (WGS) project has the project accession VXAS00000000. This version of the project (01) has the accession number VXAS01000000, and consists of sequences VXAS01000001-VXAS01044254. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 44x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..44254 /organism="Setophaga kirtlandii" /mol_type="genomic DNA" /isolate="B10K-DU-001-45" /specimen_voucher="USNM:613582" /db_xref="taxon:298831" /sex="female" /tissue_type="muscle" /country="USA" /lat_lon="44.58 N 84.07 W" /collection_date="17-Aug-1988" WGS VXAS01000001-VXAS01044254 // LOCUS VXAW01000000 35393 rc DNA linear VRT 10-JUL-2020 DEFINITION Tyrannus savana isolate B10K-DU-001-37, whole genome shotgun sequencing project. ACCESSION VXAW00000000 VERSION VXAW00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253795 KEYWORDS WGS. SOURCE Tyrannus savana (Muscivora tyrannus) ORGANISM Tyrannus savana Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Tyrannidae; Tyrannus. REFERENCE 1 (bases 1 to 35393) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 35393) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Tyrannus savana whole genome shotgun (WGS) project has the project accession VXAW00000000. This version of the project (01) has the accession number VXAW01000000, and consists of sequences VXAW01000001-VXAW01035393. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 47x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..35393 /organism="Tyrannus savana" /mol_type="genomic DNA" /isolate="B10K-DU-001-37" /specimen_voucher="USNM:609518" /db_xref="taxon:137541" /sex="female" /tissue_type="muscle" /country="Argentina" /lat_lon="28.50 S 58.71 W" /collection_date="17-Oct-1995" WGS VXAW01000001-VXAW01035393 // LOCUS VXBC01000000 24469 rc DNA linear VRT 10-JUL-2020 DEFINITION Ploceus nigricollis isolate B10K-DU-001-79, whole genome shotgun sequencing project. ACCESSION VXBC00000000 VERSION VXBC00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253827 KEYWORDS WGS. SOURCE Ploceus nigricollis ORGANISM Ploceus nigricollis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Ploceidae; Ploceinae; Ploceus. REFERENCE 1 (bases 1 to 24469) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 24469) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Ploceus nigricollis whole genome shotgun (WGS) project has the project accession VXBC00000000. This version of the project (01) has the accession number VXBC01000000, and consists of sequences VXBC01000001-VXBC01024469. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 46x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..24469 /organism="Ploceus nigricollis" /mol_type="genomic DNA" /isolate="B10K-DU-001-79" /specimen_voucher="USNM:630899" /db_xref="taxon:441696" /sex="female" /tissue_type="muscle" /country="Gabon" /lat_lon="2.34 S 9.59 E" /collection_date="10-Oct-2002" WGS VXBC01000001-VXBC01024469 // LOCUS VXAY01000000 12532 rc DNA linear VRT 10-JUL-2020 DEFINITION Oxyruncus cristatus isolate B10K-DU-002-07, whole genome shotgun sequencing project. ACCESSION VXAY00000000 VERSION VXAY00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253832 KEYWORDS WGS. SOURCE Oxyruncus cristatus (sharpbill) ORGANISM Oxyruncus cristatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Cotingidae; Oxyruncus. REFERENCE 1 (bases 1 to 12532) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 12532) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Oxyruncus cristatus whole genome shotgun (WGS) project has the project accession VXAY00000000. This version of the project (01) has the accession number VXAY01000000, and consists of sequences VXAY01000001-VXAY01012532. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 49x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..12532 /organism="Oxyruncus cristatus" /mol_type="genomic DNA" /isolate="B10K-DU-002-07" /specimen_voucher="USNM:632342" /db_xref="taxon:114331" /tissue_type="muscle" /country="Guyana" /lat_lon="4.90 N 59.90 W" /collection_date="27-Jul-2004" WGS VXAY01000001-VXAY01012532 // LOCUS VXBA01000000 11249 rc DNA linear VRT 10-JUL-2020 DEFINITION Serilophus lunatus isolate B10K-DU-002-03, whole genome shotgun sequencing project. ACCESSION VXBA00000000 VERSION VXBA00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253830 KEYWORDS WGS. SOURCE Serilophus lunatus (silver-breasted broadbill) ORGANISM Serilophus lunatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Eurylaimidae; Serilophus. REFERENCE 1 (bases 1 to 11249) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 11249) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Serilophus lunatus whole genome shotgun (WGS) project has the project accession VXBA00000000. This version of the project (01) has the accession number VXBA01000000, and consists of sequences VXBA01000001-VXBA01011249. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 49x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..11249 /organism="Serilophus lunatus" /mol_type="genomic DNA" /isolate="B10K-DU-002-03" /specimen_voucher="USNM:631797" /db_xref="taxon:239386" /sex="male" /tissue_type="muscle" /country="Myanmar" /lat_lon="27.50 N 97.80 E" /collection_date="12-Feb-2001" WGS VXBA01000001-VXBA01011249 // LOCUS VXAX01000000 13985 rc DNA linear VRT 10-JUL-2020 DEFINITION Leptocoma aspasia isolate B10K-DU-001-35, whole genome shotgun sequencing project. ACCESSION VXAX00000000 VERSION VXAX00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253793 KEYWORDS WGS. SOURCE Leptocoma aspasia ORGANISM Leptocoma aspasia Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Nectariniidae; Leptocoma. REFERENCE 1 (bases 1 to 13985) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 13985) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Leptocoma aspasia whole genome shotgun (WGS) project has the project accession VXAX00000000. This version of the project (01) has the accession number VXAX01000000, and consists of sequences VXAX01000001-VXAX01013985. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 44x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..13985 /organism="Leptocoma aspasia" /mol_type="genomic DNA" /isolate="B10K-DU-001-35" /specimen_voucher="USNM:608697" /db_xref="taxon:2585812" /sex="male" /tissue_type="muscle" /country="Papua New Guinea" /lat_lon="4.55 S 152.95 E" /collection_date="11-Feb-1994" WGS VXAX01000001-VXAX01013985 // LOCUS VXAV01000000 37168 rc DNA linear VRT 10-JUL-2020 DEFINITION Alectura lathami isolate B10K-DU-001-39, whole genome shotgun sequencing project. ACCESSION VXAV00000000 VERSION VXAV00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253796 KEYWORDS WGS. SOURCE Alectura lathami (australian brush-turkey) ORGANISM Alectura lathami Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Megapodiidae; Alectura. REFERENCE 1 (bases 1 to 37168) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 37168) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Alectura lathami whole genome shotgun (WGS) project has the project accession VXAV00000000. This version of the project (01) has the accession number VXAV01000000, and consists of sequences VXAV01000001-VXAV01037168. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 48x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..37168 /organism="Alectura lathami" /mol_type="genomic DNA" /isolate="B10K-DU-001-39" /specimen_voucher="USNM:612658" /db_xref="taxon:81907" /sex="male" /tissue_type="muscle" /country="Australia" /lat_lon="27.53 S 152.97 E" /collection_date="01-Sep-1987" WGS VXAV01000001-VXAV01037168 // LOCUS VXAT01000000 39979 rc DNA linear VRT 10-JUL-2020 DEFINITION Mesembrinibis cayennensis isolate B10K-DU-001-44, whole genome shotgun sequencing project. ACCESSION VXAT00000000 VERSION VXAT00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253800 KEYWORDS WGS. SOURCE Mesembrinibis cayennensis ORGANISM Mesembrinibis cayennensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Pelecaniformes; Threskiornithidae; Mesembrinibis. REFERENCE 1 (bases 1 to 39979) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 39979) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Mesembrinibis cayennensis whole genome shotgun (WGS) project has the project accession VXAT00000000. This version of the project (01) has the accession number VXAT01000000, and consists of sequences VXAT01000001-VXAT01039979. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 40x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..39979 /organism="Mesembrinibis cayennensis" /mol_type="genomic DNA" /isolate="B10K-DU-001-44" /specimen_voucher="USNM:613351" /db_xref="taxon:1118748" /sex="female" /tissue_type="muscle" /country="Panama" /lat_lon="9.08 N 81.85 W" /collection_date="28-Apr-1990" WGS VXAT01000001-VXAT01039979 // LOCUS VXAR01000000 29878 rc DNA linear VRT 10-JUL-2020 DEFINITION Amazona guildingii isolate B10K-DU-001-46, whole genome shotgun sequencing project. ACCESSION VXAR00000000 VERSION VXAR00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253802 KEYWORDS WGS. SOURCE Amazona guildingii ORGANISM Amazona guildingii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Psittaciformes; Psittacidae; Amazona. REFERENCE 1 (bases 1 to 29878) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 29878) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Amazona guildingii whole genome shotgun (WGS) project has the project accession VXAR00000000. This version of the project (01) has the accession number VXAR01000000, and consists of sequences VXAR01000001-VXAR01029878. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 42x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..29878 /organism="Amazona guildingii" /mol_type="genomic DNA" /isolate="B10K-DU-001-46" /specimen_voucher="USNM:613763" /db_xref="taxon:175529" /sex="female" /tissue_type="muscle" /country="Saint Vincent and the Grenadines" /collection_date="1989" WGS VXAR01000001-VXAR01029878 // LOCUS VXAK01000000 46803 rc DNA linear VRT 10-JUL-2020 DEFINITION Arenaria interpres isolate B10K-DU-005-73, whole genome shotgun sequencing project. ACCESSION VXAK00000000 VERSION VXAK00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253884 KEYWORDS WGS. SOURCE Arenaria interpres (ruddy turnstone) ORGANISM Arenaria interpres Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Scolopacidae; Arenaria. REFERENCE 1 (bases 1 to 46803) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 46803) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Arenaria interpres whole genome shotgun (WGS) project has the project accession VXAK00000000. This version of the project (01) has the accession number VXAK01000000, and consists of sequences VXAK01000001-VXAK01046803. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 40x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..46803 /organism="Arenaria interpres" /mol_type="genomic DNA" /isolate="B10K-DU-005-73" /specimen_voucher="USNM:607650" /db_xref="taxon:54971" /sex="female" /tissue_type="liver" /country="Panama" /lat_lon="9.08 N 81.85 W" /collection_date="27-Apr-1990" WGS VXAK01000001-VXAK01046803 // LOCUS VXAU01000000 11327 rc DNA linear VRT 10-JUL-2020 DEFINITION Formicarius rufipectus isolate B10K-DU-001-43, whole genome shotgun sequencing project. ACCESSION VXAU00000000 VERSION VXAU00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253799 KEYWORDS WGS. SOURCE Formicarius rufipectus ORGANISM Formicarius rufipectus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Formicariidae; Formicarius. REFERENCE 1 (bases 1 to 11327) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 11327) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Formicarius rufipectus whole genome shotgun (WGS) project has the project accession VXAU00000000. This version of the project (01) has the accession number VXAU01000000, and consists of sequences VXAU01000001-VXAU01011327. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 49x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..11327 /organism="Formicarius rufipectus" /mol_type="genomic DNA" /isolate="B10K-DU-001-43" /specimen_voucher="USNM:613308" /db_xref="taxon:1118560" /sex="male" /tissue_type="muscle" /country="Panama" /lat_lon="8.65 N 82.21 W" /collection_date="03-May-1990" WGS VXAU01000001-VXAU01011327 // LOCUS VXAO01000000 6096 rc DNA linear VRT 10-JUL-2020 DEFINITION Podilymbus podiceps isolate B10K-DU-009-04, whole genome shotgun sequencing project. ACCESSION VXAO00000000 VERSION VXAO00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253895 KEYWORDS WGS. SOURCE Podilymbus podiceps ORGANISM Podilymbus podiceps Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Podicipediformes; Podicipedidae; Podilymbus. REFERENCE 1 (bases 1 to 6096) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 6096) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Podilymbus podiceps whole genome shotgun (WGS) project has the project accession VXAO00000000. This version of the project (01) has the accession number VXAO01000000, and consists of sequences VXAO01000001-VXAO01006096. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 67x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..6096 /organism="Podilymbus podiceps" /mol_type="genomic DNA" /isolate="B10K-DU-009-04" /specimen_voucher="USNM:635999" /db_xref="taxon:9252" /sex="female" /tissue_type="mixed tissue sample" /country="Uruguay" /lat_lon="30.49 S 57.74 W" /collection_date="11-Nov-2005" WGS VXAO01000001-VXAO01006096 // LOCUS VXAL01000000 33560 rc DNA linear VRT 10-JUL-2020 DEFINITION Chauna torquata isolate B10K-DU-011-36, whole genome shotgun sequencing project. ACCESSION VXAL00000000 VERSION VXAL00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253900 KEYWORDS WGS. SOURCE Chauna torquata (southern screamer) ORGANISM Chauna torquata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anhimidae; Chauna. REFERENCE 1 (bases 1 to 33560) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 33560) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Chauna torquata whole genome shotgun (WGS) project has the project accession VXAL00000000. This version of the project (01) has the accession number VXAL01000000, and consists of sequences VXAL01000001-VXAL01033560. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 45x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..33560 /organism="Chauna torquata" /mol_type="genomic DNA" /isolate="B10K-DU-011-36" /specimen_voucher="USNM:614546" /db_xref="taxon:30388" /sex="male" /tissue_type="muscle" /country="Argentina" /collection_date="13-Feb-1992" WGS VXAL01000001-VXAL01033560 // LOCUS VXAN01000000 4638 rc DNA linear VRT 10-JUL-2020 DEFINITION Sylvietta virens isolate B10K-DU-009-59, whole genome shotgun sequencing project. ACCESSION VXAN00000000 VERSION VXAN00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253897 KEYWORDS WGS. SOURCE Sylvietta virens (Green crombec) ORGANISM Sylvietta virens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Sylviidae; Acrocephalinae; Sylvietta. REFERENCE 1 (bases 1 to 4638) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 4638) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Sylvietta virens whole genome shotgun (WGS) project has the project accession VXAN00000000. This version of the project (01) has the accession number VXAN01000000, and consists of sequences VXAN01000001-VXAN01004638. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 55x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..4638 /organism="Sylvietta virens" /mol_type="genomic DNA" /isolate="B10K-DU-009-59" /specimen_voucher="USNM:642858" /db_xref="taxon:208069" /sex="male" /tissue_type="muscle" /country="Gabon" /lat_lon="2.87 S 10.12 E" /collection_date="26-Oct-2009" WGS VXAN01000001-VXAN01004638 // LOCUS VXAQ01000000 9595 rc DNA linear VRT 10-JUL-2020 DEFINITION Chordeiles acutipennis isolate B10K-DU-008-62, whole genome shotgun sequencing project. ACCESSION VXAQ00000000 VERSION VXAQ00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253893 KEYWORDS WGS. SOURCE Chordeiles acutipennis (lesser nighthawk) ORGANISM Chordeiles acutipennis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Caprimulgimorphae; Caprimulgiformes; Caprimulgidae; Chordeilinae; Chordeiles. REFERENCE 1 (bases 1 to 9595) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 9595) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Chordeiles acutipennis whole genome shotgun (WGS) project has the project accession VXAQ00000000. This version of the project (01) has the accession number VXAQ01000000, and consists of sequences VXAQ01000001-VXAQ01009595. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 67x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..9595 /organism="Chordeiles acutipennis" /mol_type="genomic DNA" /isolate="B10K-DU-008-62" /specimen_voucher="USNM:632837" /db_xref="taxon:118183" /sex="female" /tissue_type="mixed tissue sample" /country="Guyana" /lat_lon="3.88 N 59.58 W" /collection_date="05-Aug-2004" WGS VXAQ01000001-VXAQ01009595 // LOCUS VXAM01000000 6661 rc DNA linear VRT 10-JUL-2020 DEFINITION Corythaixoides concolor isolate B10K-DU-011-20, whole genome shotgun sequencing project. ACCESSION VXAM00000000 VERSION VXAM00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253899 KEYWORDS WGS. SOURCE Corythaixoides concolor (grey go-away-bird) ORGANISM Corythaixoides concolor Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Musophagiformes; Musophagidae; Corythaixoides. REFERENCE 1 (bases 1 to 6661) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 6661) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Corythaixoides concolor whole genome shotgun (WGS) project has the project accession VXAM00000000. This version of the project (01) has the accession number VXAM01000000, and consists of sequences VXAM01000001-VXAM01006661. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 63x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..6661 /organism="Corythaixoides concolor" /mol_type="genomic DNA" /isolate="B10K-DU-011-20" /specimen_voucher="USNM:642466" /db_xref="taxon:103956" /sex="female" /tissue_type="muscle" /country="Namibia" /lat_lon="20.88 S 15.60 E" /collection_date="05-Sep-2009" WGS VXAM01000001-VXAM01006661 // LOCUS VXAH01000000 2249 rc DNA linear VRT 10-JUL-2020 DEFINITION Piprites chloris isolate B10K-DU-007-02, whole genome shotgun sequencing project. ACCESSION VXAH00000000 VERSION VXAH00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253889 KEYWORDS WGS. SOURCE Piprites chloris (white-winged piprites) ORGANISM Piprites chloris Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Pipridae; Piprites. REFERENCE 1 (bases 1 to 2249) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 2249) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Piprites chloris whole genome shotgun (WGS) project has the project accession VXAH00000000. This version of the project (01) has the accession number VXAH01000000, and consists of sequences VXAH01000001-VXAH01002249. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 75x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..2249 /organism="Piprites chloris" /mol_type="genomic DNA" /isolate="B10K-DU-007-02" /specimen_voucher="USNM:625579" /db_xref="taxon:114369" /sex="male" /tissue_type="mixed tissue sample" /country="Guyana" /lat_lon="1.58 N 58.63 W" /collection_date="18-Mar-1999" WGS VXAH01000001-VXAH01002249 // LOCUS VXAG01000000 5788 rc DNA linear VRT 10-JUL-2020 DEFINITION Trogon melanurus isolate B10K-DU-007-40, whole genome shotgun sequencing project. ACCESSION VXAG00000000 VERSION VXAG00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253890 KEYWORDS WGS. SOURCE Trogon melanurus (black-tailed trogon) ORGANISM Trogon melanurus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Trogoniformes; Trogonidae; Trogon. REFERENCE 1 (bases 1 to 5788) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 5788) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Trogon melanurus whole genome shotgun (WGS) project has the project accession VXAG00000000. This version of the project (01) has the accession number VXAG01000000, and consists of sequences VXAG01000001-VXAG01005788. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 69x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..5788 /organism="Trogon melanurus" /mol_type="genomic DNA" /isolate="B10K-DU-007-40" /specimen_voucher="USNM:627360" /db_xref="taxon:56311" /sex="male" /tissue_type="mixed tissue sample" /country="Guyana" /lat_lon="6.02 N 58.20 W" /collection_date="14-Oct-2000" WGS VXAG01000001-VXAG01005788 // LOCUS VXAJ01000000 2775 rc DNA linear VRT 10-JUL-2020 DEFINITION Herpetotheres cachinnans isolate B10K-DU-005-78, whole genome shotgun sequencing project. ACCESSION VXAJ00000000 VERSION VXAJ00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253885 KEYWORDS WGS. SOURCE Herpetotheres cachinnans ORGANISM Herpetotheres cachinnans Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Falconiformes; Falconidae; Herpetotheres. REFERENCE 1 (bases 1 to 2775) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 2775) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Herpetotheres cachinnans whole genome shotgun (WGS) project has the project accession VXAJ00000000. This version of the project (01) has the accession number VXAJ01000000, and consists of sequences VXAJ01000001-VXAJ01002775. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 66x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..2775 /organism="Herpetotheres cachinnans" /mol_type="genomic DNA" /isolate="B10K-DU-005-78" /specimen_voucher="USNM:612262" /db_xref="taxon:56343" /sex="male" /tissue_type="mixed tissue sample" /country="Panama" /lat_lon="9.22 N 82.35 W" /collection_date="26-Feb-1989" WGS VXAJ01000001-VXAJ01002775 // LOCUS VXAF01000000 3422 rc DNA linear VRT 10-JUL-2020 DEFINITION Spizaetus tyrannus isolate B10K-DU-007-42, whole genome shotgun sequencing project. ACCESSION VXAF00000000 VERSION VXAF00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253891 KEYWORDS WGS. SOURCE Spizaetus tyrannus (black hawk-eagle) ORGANISM Spizaetus tyrannus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Accipitriformes; Accipitridae; Accipitrinae; Spizaetus. REFERENCE 1 (bases 1 to 3422) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 3422) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Spizaetus tyrannus whole genome shotgun (WGS) project has the project accession VXAF00000000. This version of the project (01) has the accession number VXAF01000000, and consists of sequences VXAF01000001-VXAF01003422. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 57x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..3422 /organism="Spizaetus tyrannus" /mol_type="genomic DNA" /isolate="B10K-DU-007-42" /specimen_voucher="USNM:623090" /db_xref="taxon:252798" /sex="male" /tissue_type="muscle" /country="Guyana" /lat_lon="6.68 N 57.93 W" /collection_date="20-Oct-2000" WGS VXAF01000001-VXAF01003422 // LOCUS VXAB01000000 26662 rc DNA linear VRT 10-JUL-2020 DEFINITION Odontophorus gujanensis isolate B10K-DU-001-53, whole genome shotgun sequencing project. ACCESSION VXAB00000000 VERSION VXAB00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253806 KEYWORDS WGS. SOURCE Odontophorus gujanensis (marbled wood quail) ORGANISM Odontophorus gujanensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Odontophoridae; Odontophorus. REFERENCE 1 (bases 1 to 26662) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 26662) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Odontophorus gujanensis whole genome shotgun (WGS) project has the project accession VXAB00000000. This version of the project (01) has the accession number VXAB01000000, and consists of sequences VXAB01000001-VXAB01026662. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 52x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..26662 /organism="Odontophorus gujanensis" /mol_type="genomic DNA" /isolate="B10K-DU-001-53" /specimen_voucher="USNM:621708" /db_xref="taxon:886794" /sex="female" /tissue_type="muscle" /country="Guyana" /lat_lon="1.33 N 58.97 W" /collection_date="08-Sep-1998" WGS VXAB01000001-VXAB01026662 // LOCUS VXAE01000000 33984 rc DNA linear VRT 10-JUL-2020 DEFINITION Ciconia maguari isolate B10K-DU-001-47, whole genome shotgun sequencing project. ACCESSION VXAE00000000 VERSION VXAE00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253803 KEYWORDS WGS. SOURCE Ciconia maguari ORGANISM Ciconia maguari Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Ciconiiformes; Ciconiidae; Ciconia. REFERENCE 1 (bases 1 to 33984) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 33984) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Ciconia maguari whole genome shotgun (WGS) project has the project accession VXAE00000000. This version of the project (01) has the accession number VXAE01000000, and consists of sequences VXAE01000001-VXAE01033984. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 41x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..33984 /organism="Ciconia maguari" /mol_type="genomic DNA" /isolate="B10K-DU-001-47" /specimen_voucher="USNM:614528" /db_xref="taxon:52777" /sex="female" /tissue_type="muscle" /country="Argentina" /lat_lon="33.81 S 59.05 W" /collection_date="18-Feb-1992" WGS VXAE01000001-VXAE01033984 // LOCUS VXAD01000000 47015 rc DNA linear VRT 10-JUL-2020 DEFINITION Dicrurus megarhynchus isolate B10K-DU-001-48, whole genome shotgun sequencing project. ACCESSION VXAD00000000 VERSION VXAD00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253804 KEYWORDS WGS. SOURCE Dicrurus megarhynchus ORGANISM Dicrurus megarhynchus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Dicruridae; Dicrurus. REFERENCE 1 (bases 1 to 47015) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 47015) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Dicrurus megarhynchus whole genome shotgun (WGS) project has the project accession VXAD00000000. This version of the project (01) has the accession number VXAD01000000, and consists of sequences VXAD01000001-VXAD01047015. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 42x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..47015 /organism="Dicrurus megarhynchus" /mol_type="genomic DNA" /isolate="B10K-DU-001-48" /specimen_voucher="USNM:616063" /db_xref="taxon:450177" /tissue_type="muscle" /country="Papua New Guinea" /lat_lon="4.45 S 152.93 E" /collection_date="16-Jan-1994" WGS VXAD01000001-VXAD01047015 // LOCUS VXAA01000000 11789 rc DNA linear VRT 10-JUL-2020 DEFINITION Anseranas semipalmata isolate B10K-DU-001-57, whole genome shotgun sequencing project. ACCESSION VXAA00000000 VERSION VXAA00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253809 KEYWORDS WGS. SOURCE Anseranas semipalmata (magpie goose) ORGANISM Anseranas semipalmata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anseranatidae; Anseranas. REFERENCE 1 (bases 1 to 11789) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 11789) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Anseranas semipalmata whole genome shotgun (WGS) project has the project accession VXAA00000000. This version of the project (01) has the accession number VXAA01000000, and consists of sequences VXAA01000001-VXAA01011789. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 47x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..11789 /organism="Anseranas semipalmata" /mol_type="genomic DNA" /isolate="B10K-DU-001-57" /specimen_voucher="USNM:623235" /db_xref="taxon:8851" /sex="male" /tissue_type="muscle" /collection_date="27-Nov-2001" WGS VXAA01000001-VXAA01011789 // LOCUS VXAC01000000 14637 rc DNA linear VRT 10-JUL-2020 DEFINITION Rhipidura dahli isolate B10K-DU-001-49, whole genome shotgun sequencing project. ACCESSION VXAC00000000 VERSION VXAC00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253805 KEYWORDS WGS. SOURCE Rhipidura dahli ORGANISM Rhipidura dahli Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Rhipiduridae; Rhipidura. REFERENCE 1 (bases 1 to 14637) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 14637) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Rhipidura dahli whole genome shotgun (WGS) project has the project accession VXAC00000000. This version of the project (01) has the accession number VXAC01000000, and consists of sequences VXAC01000001-VXAC01014637. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 49x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..14637 /organism="Rhipidura dahli" /mol_type="genomic DNA" /isolate="B10K-DU-001-49" /specimen_voucher="USNM:616255" /db_xref="taxon:667186" /sex="male" /tissue_type="muscle" /country="Papua New Guinea" /lat_lon="4.45 S 152.93 E" /collection_date="25-Jan-1994" WGS VXAC01000001-VXAC01014637 // LOCUS VXAI01000000 3517 rc DNA linear VRT 10-JUL-2020 DEFINITION Rostratula benghalensis isolate B10K-DU-006-20, whole genome shotgun sequencing project. ACCESSION VXAI00000000 VERSION VXAI00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253888 KEYWORDS WGS. SOURCE Rostratula benghalensis (greater painted-snipe) ORGANISM Rostratula benghalensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Rostratulidae; Rostratula. REFERENCE 1 (bases 1 to 3517) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 3517) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Rostratula benghalensis whole genome shotgun (WGS) project has the project accession VXAI00000000. This version of the project (01) has the accession number VXAI01000000, and consists of sequences VXAI01000001-VXAI01003517. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 67x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..3517 /organism="Rostratula benghalensis" /mol_type="genomic DNA" /isolate="B10K-DU-006-20" /specimen_voucher="USNM:613014" /db_xref="taxon:118793" /sex="female" /tissue_type="mixed tissue sample" /country="Philippines" /lat_lon="18.04 N 121.55 E" /collection_date="26-Apr-1989" WGS VXAI01000001-VXAI01003517 // LOCUS VWZX01000000 19989 rc DNA linear VRT 10-JUL-2020 DEFINITION Galbula dea isolate B10K-DU-001-62, whole genome shotgun sequencing project. ACCESSION VWZX00000000 VERSION VWZX00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253812 KEYWORDS WGS. SOURCE Galbula dea ORGANISM Galbula dea Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galbuliformes; Galbulidae; Galbula. REFERENCE 1 (bases 1 to 19989) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 19989) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Galbula dea whole genome shotgun (WGS) project has the project accession VWZX00000000. This version of the project (01) has the accession number VWZX01000000, and consists of sequences VWZX01000001-VWZX01019989. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 48x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..19989 /organism="Galbula dea" /mol_type="genomic DNA" /isolate="B10K-DU-001-62" /specimen_voucher="USNM:625763" /db_xref="taxon:1109041" /sex="female" /tissue_type="muscle" /country="Guyana" /lat_lon="6.02 N 58.20 W" /collection_date="11-Mar-2000" WGS VWZX01000001-VWZX01019989 // LOCUS VWZZ01000000 14465 rc DNA linear VRT 10-JUL-2020 DEFINITION Psophia crepitans isolate B10K-DU-001-60, whole genome shotgun sequencing project. ACCESSION VWZZ00000000 VERSION VWZZ00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253810 KEYWORDS WGS. SOURCE Psophia crepitans (common trumpeter) ORGANISM Psophia crepitans Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Psophiidae; Psophia. REFERENCE 1 (bases 1 to 14465) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 14465) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Psophia crepitans whole genome shotgun (WGS) project has the project accession VWZZ00000000. This version of the project (01) has the accession number VWZZ01000000, and consists of sequences VWZZ01000001-VWZZ01014465. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 42x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..14465 /organism="Psophia crepitans" /mol_type="genomic DNA" /isolate="B10K-DU-001-60" /specimen_voucher="USNM:625105" /db_xref="taxon:54359" /sex="male" /tissue_type="muscle" /country="Guyana" /lat_lon="1.38 N 58.93 W" /collection_date="03-Sep-1998" WGS VWZZ01000001-VWZZ01014465 // LOCUS VWZY01000000 23709 rc DNA linear VRT 10-JUL-2020 DEFINITION Chloroceryle aenea isolate B10K-DU-001-61, whole genome shotgun sequencing project. ACCESSION VWZY00000000 VERSION VWZY00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253811 KEYWORDS WGS. SOURCE Chloroceryle aenea (American pygmy kingfisher) ORGANISM Chloroceryle aenea Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Coraciiformes; Cerylidae; Chloroceryle. REFERENCE 1 (bases 1 to 23709) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 23709) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Chloroceryle aenea whole genome shotgun (WGS) project has the project accession VWZY00000000. This version of the project (01) has the accession number VWZY01000000, and consists of sequences VWZY01000001-VWZY01023709. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 44x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..23709 /organism="Chloroceryle aenea" /mol_type="genomic DNA" /isolate="B10K-DU-001-61" /specimen_voucher="USNM:625133" /db_xref="taxon:176938" /sex="female" /tissue_type="muscle" /country="Guyana" /lat_lon="1.38 N 58.93 W" /collection_date="06-Sep-1998" WGS VWZY01000001-VWZY01023709 // LOCUS VWZW01000000 13754 rc DNA linear VRT 10-JUL-2020 DEFINITION Edolisoma coerulescens isolate B10K-DU-001-25, whole genome shotgun sequencing project. ACCESSION VWZW00000000 VERSION VWZW00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253783 KEYWORDS WGS. SOURCE Edolisoma coerulescens ORGANISM Edolisoma coerulescens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Campephagidae; Edolisoma. REFERENCE 1 (bases 1 to 13754) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 13754) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Edolisoma coerulescens whole genome shotgun (WGS) project has the project accession VWZW00000000. This version of the project (01) has the accession number VWZW01000000, and consists of sequences VWZW01000001-VWZW01013754. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 42x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..13754 /organism="Edolisoma coerulescens" /mol_type="genomic DNA" /isolate="B10K-DU-001-25" /specimen_voucher="USNM:607407" /db_xref="taxon:2585810" /sex="female" /tissue_type="muscle" /country="Philippines" /lat_lon="17.85 N 121.98 E" /collection_date="05-May-1989" WGS VWZW01000001-VWZW01013754 // LOCUS VWZV01000000 29340 rc DNA linear VRT 10-JUL-2020 DEFINITION Irena cyanogastra isolate B10K-DU-001-26, whole genome shotgun sequencing project. ACCESSION VWZV00000000 VERSION VWZV00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253784 KEYWORDS WGS. SOURCE Irena cyanogastra (fairy bluebird) ORGANISM Irena cyanogastra Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Irenidae; Irena. REFERENCE 1 (bases 1 to 29340) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 29340) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Irena cyanogastra whole genome shotgun (WGS) project has the project accession VWZV00000000. This version of the project (01) has the accession number VWZV01000000, and consists of sequences VWZV01000001-VWZV01029340. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 49x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..29340 /organism="Irena cyanogastra" /mol_type="genomic DNA" /isolate="B10K-DU-001-26" /specimen_voucher="USNM:607434" /db_xref="taxon:175120" /sex="female" /tissue_type="muscle" /country="Philippines" /lat_lon="17.83 N 122.02 E" /collection_date="05-May-1989" WGS VWZV01000001-VWZV01029340 // LOCUS VWZU01000000 31158 rc DNA linear VRT 10-JUL-2020 DEFINITION Sterrhoptilus dennistouni isolate B10K-DU-001-27, whole genome shotgun sequencing project. ACCESSION VWZU00000000 VERSION VWZU00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253785 KEYWORDS WGS. SOURCE Sterrhoptilus dennistouni ORGANISM Sterrhoptilus dennistouni Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Zosteropidae; Sterrhoptilus. REFERENCE 1 (bases 1 to 31158) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 31158) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Sterrhoptilus dennistouni whole genome shotgun (WGS) project has the project accession VWZU00000000. This version of the project (01) has the accession number VWZU01000000, and consists of sequences VWZU01000001-VWZU01031158. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 46x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..31158 /organism="Sterrhoptilus dennistouni" /mol_type="genomic DNA" /isolate="B10K-DU-001-27" /specimen_voucher="USNM:607461" /db_xref="taxon:2585820" /sex="female" /tissue_type="muscle" /country="Philippines" /lat_lon="17.92 N 122.03 E" /collection_date="27-Apr-1989" WGS VWZU01000001-VWZU01031158 // LOCUS VWZT01000000 28049 rc DNA linear VRT 10-JUL-2020 DEFINITION Pachycephala philippinensis isolate B10K-DU-001-28, whole genome shotgun sequencing project. ACCESSION VWZT00000000 VERSION VWZT00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253786 KEYWORDS WGS. SOURCE Pachycephala philippinensis (yellow-belllied whistler) ORGANISM Pachycephala philippinensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Pachycephalidae; Pachycephala. REFERENCE 1 (bases 1 to 28049) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 28049) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Pachycephala philippinensis whole genome shotgun (WGS) project has the project accession VWZT00000000. This version of the project (01) has the accession number VWZT01000000, and consists of sequences VWZT01000001-VWZT01028049. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 41x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..28049 /organism="Pachycephala philippinensis" /mol_type="genomic DNA" /isolate="B10K-DU-001-28" /specimen_voucher="USNM:607512" /db_xref="taxon:449367" /sex="female" /tissue_type="muscle" /country="Philippines" /lat_lon="17.92 N 122.03 E" /collection_date="28-Apr-1989" WGS VWZT01000001-VWZT01028049 // LOCUS VWZS01000000 18698 rc DNA linear VRT 10-JUL-2020 DEFINITION Rhabdornis inornatus isolate B10K-DU-001-29, whole genome shotgun sequencing project. ACCESSION VWZS00000000 VERSION VWZS00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253787 KEYWORDS WGS. SOURCE Rhabdornis inornatus ORGANISM Rhabdornis inornatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Rhabdornithidae; Rhabdornis. REFERENCE 1 (bases 1 to 18698) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 18698) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Rhabdornis inornatus whole genome shotgun (WGS) project has the project accession VWZS00000000. This version of the project (01) has the accession number VWZS01000000, and consists of sequences VWZS01000001-VWZS01018698. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 50x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..18698 /organism="Rhabdornis inornatus" /mol_type="genomic DNA" /isolate="B10K-DU-001-29" /specimen_voucher="USNM:607544" /db_xref="taxon:237438" /sex="female" /tissue_type="muscle" /country="Philippines" /lat_lon="17.83 N 122.02 E" /collection_date="07-May-1989" WGS VWZS01000001-VWZS01018698 // LOCUS VWZP01000000 16764 rc DNA linear VRT 10-JUL-2020 DEFINITION Dicaeum eximium isolate B10K-DU-001-34, whole genome shotgun sequencing project. ACCESSION VWZP00000000 VERSION VWZP00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253792 KEYWORDS WGS. SOURCE Dicaeum eximium ORGANISM Dicaeum eximium Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Dicaeidae; Dicaeum. REFERENCE 1 (bases 1 to 16764) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 16764) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Dicaeum eximium whole genome shotgun (WGS) project has the project accession VWZP00000000. This version of the project (01) has the accession number VWZP01000000, and consists of sequences VWZP01000001-VWZP01016764. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 49x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..16764 /organism="Dicaeum eximium" /mol_type="genomic DNA" /isolate="B10K-DU-001-34" /specimen_voucher="USNM:608695" /db_xref="taxon:667154" /sex="female" /tissue_type="muscle" /country="Papua New Guinea" /lat_lon="4.45 S 152.93 E" /collection_date="20-Jan-1994" WGS VWZP01000001-VWZP01016764 // LOCUS VWZQ01000000 20423 rc DNA linear VRT 10-JUL-2020 DEFINITION Myiagra hebetior isolate B10K-DU-001-33, whole genome shotgun sequencing project. ACCESSION VWZQ00000000 VERSION VWZQ00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253791 KEYWORDS WGS. SOURCE Myiagra hebetior ORGANISM Myiagra hebetior Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Monarchidae; Myiagra. REFERENCE 1 (bases 1 to 20423) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 20423) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Myiagra hebetior whole genome shotgun (WGS) project has the project accession VWZQ00000000. This version of the project (01) has the accession number VWZQ01000000, and consists of sequences VWZQ01000001-VWZQ01020423. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 46x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..20423 /organism="Myiagra hebetior" /mol_type="genomic DNA" /isolate="B10K-DU-001-33" /specimen_voucher="USNM:608684" /db_xref="taxon:381031" /sex="female" /tissue_type="muscle" /country="Papua New Guinea" /lat_lon="4.45 S 152.93 E" /collection_date="17-Jan-1994" WGS VWZQ01000001-VWZQ01020423 // LOCUS VWZO01000000 41629 rc DNA linear VRT 10-JUL-2020 DEFINITION Bucco capensis isolate B10K-DU-001-16, whole genome shotgun sequencing project. ACCESSION VWZO00000000 VERSION VWZO00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253774 KEYWORDS WGS. SOURCE Bucco capensis (collared puffbird) ORGANISM Bucco capensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galbuliformes; Bucconidae; Bucco. REFERENCE 1 (bases 1 to 41629) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 41629) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Bucco capensis whole genome shotgun (WGS) project has the project accession VWZO00000000. This version of the project (01) has the accession number VWZO01000000, and consists of sequences VWZO01000001-VWZO01041629. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 54x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..41629 /organism="Bucco capensis" /mol_type="genomic DNA" /isolate="B10K-DU-001-16" /specimen_voucher="USNM:587324" /db_xref="taxon:135168" /sex="female" /tissue_type="muscle" /country="Guyana" /lat_lon="1.38 N 58.93 W" /collection_date="31-Aug-1998" WGS VWZO01000001-VWZO01041629 // LOCUS VWZM01000000 26321 rc DNA linear VRT 10-JUL-2020 DEFINITION Loxia leucoptera isolate B10K-DU-001-19, whole genome shotgun sequencing project. ACCESSION VWZM00000000 VERSION VWZM00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253777 KEYWORDS WGS. SOURCE Loxia leucoptera ORGANISM Loxia leucoptera Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Fringillidae; Carduelinae; Loxia. REFERENCE 1 (bases 1 to 26321) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 26321) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Loxia leucoptera whole genome shotgun (WGS) project has the project accession VWZM00000000. This version of the project (01) has the accession number VWZM01000000, and consists of sequences VWZM01000001-VWZM01026321. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 50x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..26321 /organism="Loxia leucoptera" /mol_type="genomic DNA" /isolate="B10K-DU-001-19" /specimen_voucher="USNM:601821" /db_xref="taxon:96539" /sex="female" /tissue_type="muscle" /country="USA" /lat_lon="61.31 N 149.81 W" /collection_date="06-Sep-2000" WGS VWZM01000001-VWZM01026321 // LOCUS VWZJ01000000 30279 rc DNA linear VRT 10-JUL-2020 DEFINITION Hemiprocne comata isolate B10K-DU-001-23, whole genome shotgun sequencing project. ACCESSION VWZJ00000000 VERSION VWZJ00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253781 KEYWORDS WGS. SOURCE Hemiprocne comata ORGANISM Hemiprocne comata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Caprimulgimorphae; Apodiformes; Apodidae; Hemiprocninae; Hemiprocne. REFERENCE 1 (bases 1 to 30279) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 30279) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Hemiprocne comata whole genome shotgun (WGS) project has the project accession VWZJ00000000. This version of the project (01) has the accession number VWZJ01000000, and consists of sequences VWZJ01000001-VWZJ01030279. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 40x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..30279 /organism="Hemiprocne comata" /mol_type="genomic DNA" /isolate="B10K-DU-001-23" /specimen_voucher="USNM:607338" /db_xref="taxon:243314" /sex="female" /tissue_type="muscle" /country="Philippines" /lat_lon="17.85 N 121.98 E" /collection_date="10-May-1989" WGS VWZJ01000001-VWZJ01030279 // LOCUS VWZL01000000 11280 rc DNA linear VRT 10-JUL-2020 DEFINITION Stercorarius parasiticus isolate B10K-DU-001-20, whole genome shotgun sequencing project. ACCESSION VWZL00000000 VERSION VWZL00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253778 KEYWORDS WGS. SOURCE Stercorarius parasiticus ORGANISM Stercorarius parasiticus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Stercorariidae; Stercorarius. REFERENCE 1 (bases 1 to 11280) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 11280) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Stercorarius parasiticus whole genome shotgun (WGS) project has the project accession VWZL00000000. This version of the project (01) has the accession number VWZL01000000, and consists of sequences VWZL01000001-VWZL01011280. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 36x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..11280 /organism="Stercorarius parasiticus" /mol_type="genomic DNA" /isolate="B10K-DU-001-20" /specimen_voucher="USNM:606730" /db_xref="taxon:54059" /sex="female" /tissue_type="muscle" /country="Panama" /lat_lon="9.24 N 82.31 W" /collection_date="28-Feb-1989" WGS VWZL01000001-VWZL01011280 // LOCUS VWZK01000000 37658 rc DNA linear VRT 10-JUL-2020 DEFINITION Baryphthengus martii isolate B10K-DU-001-21, whole genome shotgun sequencing project. ACCESSION VWZK00000000 VERSION VWZK00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253779 KEYWORDS WGS. SOURCE Baryphthengus martii ORGANISM Baryphthengus martii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Coraciiformes; Momotidae; Baryphthengus. REFERENCE 1 (bases 1 to 37658) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 37658) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Baryphthengus martii whole genome shotgun (WGS) project has the project accession VWZK00000000. This version of the project (01) has the accession number VWZK01000000, and consists of sequences VWZK01000001-VWZK01037658. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 44x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..37658 /organism="Baryphthengus martii" /mol_type="genomic DNA" /isolate="B10K-DU-001-21" /specimen_voucher="USNM:606819" /db_xref="taxon:176943" /sex="female" /tissue_type="muscle" /country="Panama" /lat_lon="9.24 N 82.26 W" /collection_date="04-Feb-1989" WGS VWZK01000001-VWZK01037658 // LOCUS VWZI01000000 45061 rc DNA linear VRT 10-JUL-2020 DEFINITION Psilopogon haemacephalus isolate B10K-DU-001-24, whole genome shotgun sequencing project. ACCESSION VWZI00000000 VERSION VWZI00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253782 KEYWORDS WGS. SOURCE Psilopogon haemacephalus ORGANISM Psilopogon haemacephalus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Piciformes; Megalaimidae; Psilopogon. REFERENCE 1 (bases 1 to 45061) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 45061) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Psilopogon haemacephalus whole genome shotgun (WGS) project has the project accession VWZI00000000. This version of the project (01) has the accession number VWZI01000000, and consists of sequences VWZI01000001-VWZI01045061. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 41x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..45061 /organism="Psilopogon haemacephalus" /mol_type="genomic DNA" /isolate="B10K-DU-001-24" /specimen_voucher="USNM:607367" /db_xref="taxon:2585815" /sex="female" /tissue_type="muscle" /country="Philippines" /lat_lon="17.85 N 121.98 E" /collection_date="12-May-1989" WGS VWZI01000001-VWZI01045061 // LOCUS VWZH01000000 3302 rc DNA linear VRT 10-JUL-2020 DEFINITION Dromaius novaehollandiae isolate B10K-LSUMZ-23963, whole genome shotgun sequencing project. ACCESSION VWZH00000000 VERSION VWZH00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253764 KEYWORDS WGS. SOURCE Dromaius novaehollandiae (emu) ORGANISM Dromaius novaehollandiae Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Casuariiformes; Dromaiidae; Dromaius. REFERENCE 1 (bases 1 to 3302) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 3302) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Dromaius novaehollandiae whole genome shotgun (WGS) project has the project accession VWZH00000000. This version of the project (01) has the accession number VWZH01000000, and consists of sequences VWZH01000001-VWZH01003302. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 71x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..3302 /organism="Dromaius novaehollandiae" /mol_type="genomic DNA" /isolate="B10K-LSUMZ-23963" /specimen_voucher="LSUMZ:Ornithology:B23963" /db_xref="taxon:8790" /sex="female" /tissue_type="muscle" WGS VWZH01000001-VWZH01003302 // LOCUS VWZG01000000 26174 rc DNA linear VRT 10-JUL-2020 DEFINITION Grallaria varia isolate B10K-DU-001-02, whole genome shotgun sequencing project. ACCESSION VWZG00000000 VERSION VWZG00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253766 KEYWORDS WGS. SOURCE Grallaria varia (variegated antpitta) ORGANISM Grallaria varia Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Formicariidae; Grallaria. REFERENCE 1 (bases 1 to 26174) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 26174) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Grallaria varia whole genome shotgun (WGS) project has the project accession VWZG00000000. This version of the project (01) has the accession number VWZG01000000, and consists of sequences VWZG01000001-VWZG01026174. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 49x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..26174 /organism="Grallaria varia" /mol_type="genomic DNA" /isolate="B10K-DU-001-02" /specimen_voucher="USNM:541382" /db_xref="taxon:117165" /sex="female" /tissue_type="muscle" /country="Brazil" /lat_lon="3.65 S 52.37 W" /collection_date="20-Aug-1986" WGS VWZG01000001-VWZG01026174 // LOCUS VWZF01000000 13055 rc DNA linear VRT 10-JUL-2020 DEFINITION Sclerurus mexicanus isolate B10K-DU-001-03, whole genome shotgun sequencing project. ACCESSION VWZF00000000 VERSION VWZF00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253767 KEYWORDS WGS. SOURCE Sclerurus mexicanus (tawny-throated leaftosser) ORGANISM Sclerurus mexicanus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Furnariidae; Sclerurus. REFERENCE 1 (bases 1 to 13055) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 13055) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Sclerurus mexicanus whole genome shotgun (WGS) project has the project accession VWZF00000000. This version of the project (01) has the accession number VWZF01000000, and consists of sequences VWZF01000001-VWZF01013055. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 46x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..13055 /organism="Sclerurus mexicanus" /mol_type="genomic DNA" /isolate="B10K-DU-001-03" /specimen_voucher="USNM:541572" /db_xref="taxon:265632" /sex="female" /tissue_type="muscle" /country="Brazil" /lat_lon="3.65 S 52.37 W" /collection_date="06-Sep-1986" WGS VWZF01000001-VWZF01013055 // LOCUS VWZC01000000 30009 rc DNA linear VRT 10-JUL-2020 DEFINITION Ciccaba nigrolineata isolate B10K-DU-001-07, whole genome shotgun sequencing project. ACCESSION VWZC00000000 VERSION VWZC00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253770 KEYWORDS WGS. SOURCE Ciccaba nigrolineata ORGANISM Ciccaba nigrolineata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Strigiformes; Strigidae; Ciccaba. REFERENCE 1 (bases 1 to 30009) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 30009) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Ciccaba nigrolineata whole genome shotgun (WGS) project has the project accession VWZC00000000. This version of the project (01) has the accession number VWZC01000000, and consists of sequences VWZC01000001-VWZC01030009. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 41x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..30009 /organism="Ciccaba nigrolineata" /mol_type="genomic DNA" /isolate="B10K-DU-001-07" /specimen_voucher="USNM:562545" /db_xref="taxon:1118524" /sex="female" /tissue_type="muscle" /country="Panama" /lat_lon="9.29 N 82.08 W" /collection_date="16-Mar-1987" WGS VWZC01000001-VWZC01030009 // LOCUS VWZD01000000 25248 rc DNA linear VRT 10-JUL-2020 DEFINITION Sakesphorus luctuosus isolate B10K-DU-001-06, whole genome shotgun sequencing project. ACCESSION VWZD00000000 VERSION VWZD00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253769 KEYWORDS WGS. SOURCE Sakesphorus luctuosus ORGANISM Sakesphorus luctuosus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Thamnophilidae; Sakesphorus. REFERENCE 1 (bases 1 to 25248) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 25248) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Sakesphorus luctuosus whole genome shotgun (WGS) project has the project accession VWZD00000000. This version of the project (01) has the accession number VWZD01000000, and consists of sequences VWZD01000001-VWZD01025248. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 45x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..25248 /organism="Sakesphorus luctuosus" /mol_type="genomic DNA" /isolate="B10K-DU-001-06" /specimen_voucher="USNM:562277" /db_xref="taxon:419690" /sex="female" /tissue_type="muscle" /country="Brazil" /lat_lon="3.65 S 52.37 W" /collection_date="08-Sep-1986" WGS VWZD01000001-VWZD01025248 // LOCUS VWPP01000000 3770 rc DNA linear VRT 10-JUL-2020 DEFINITION Cochlearius cochlearius isolate B10K-CU-031-03, whole genome shotgun sequencing project. ACCESSION VWPP00000000 VERSION VWPP00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253750 KEYWORDS WGS. SOURCE Cochlearius cochlearius (boat-billed heron) ORGANISM Cochlearius cochlearius Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Pelecaniformes; Ardeidae; Cochlearius. REFERENCE 1 (bases 1 to 3770) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 3770) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Cochlearius cochlearius whole genome shotgun (WGS) project has the project accession VWPP00000000. This version of the project (01) has the accession number VWPP01000000, and consists of sequences VWPP01000001-VWPP01003770. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 61x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..3770 /organism="Cochlearius cochlearius" /mol_type="genomic DNA" /isolate="B10K-CU-031-03" /specimen_voucher="LSUMZ:Ornithology:B18469" /db_xref="taxon:110676" /tissue_type="muscle" /country="Bolivia" /lat_lon="14.83 S 60.42 W" /collection_date="21-Aug-1990" WGS VWPP01000001-VWPP01003770 // LOCUS VZTG01000000 21103 rc DNA linear VRT 10-JUL-2020 DEFINITION Melanocharis versteri isolate B10K-DU-029-37, whole genome shotgun sequencing project. ACCESSION VZTG00000000 VERSION VZTG00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253939 KEYWORDS WGS. SOURCE Melanocharis versteri (Fan-tailed berrypecker) ORGANISM Melanocharis versteri Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Melanocharitidae; Melanocharis. REFERENCE 1 (bases 1 to 21103) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 21103) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Melanocharis versteri whole genome shotgun (WGS) project has the project accession VZTG00000000. This version of the project (01) has the accession number VZTG01000000, and consists of sequences VZTG01000001-VZTG01021103. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 54x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..21103 /organism="Melanocharis versteri" /mol_type="genomic DNA" /isolate="B10K-DU-029-37" /db_xref="taxon:254552" /tissue_type="liver" /country="Papua New Guinea" /lat_lon="9.12 S 148.12 E" /collection_date="02-Aug-1987" WGS VZTG01000001-VZTG01021103 // LOCUS WBMV01000000 16876 rc DNA linear VRT 10-JUL-2020 DEFINITION Campylorhamphus procurvoides isolate B10K-DU-001-09, whole genome shotgun sequencing project. ACCESSION WBMV00000000 VERSION WBMV00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253772 KEYWORDS WGS. SOURCE Campylorhamphus procurvoides ORGANISM Campylorhamphus procurvoides Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Dendrocolaptidae; Campylorhamphus. REFERENCE 1 (bases 1 to 16876) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 16876) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (29-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Campylorhamphus procurvoides whole genome shotgun (WGS) project has the project accession WBMV00000000. This version of the project (01) has the accession number WBMV01000000, and consists of sequences WBMV01000001-WBMV01016876. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 43x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..16876 /organism="Campylorhamphus procurvoides" /mol_type="genomic DNA" /isolate="B10K-DU-001-09" /specimen_voucher="USNM:572547" /db_xref="taxon:190295" /sex="female" /tissue_type="muscle" /country="Brazil" /lat_lon="3.65 S 52.37 W" /collection_date="29-Aug-1986" WGS WBMV01000001-WBMV01016876 // LOCUS VWZE01000000 46120 rc DNA linear VRT 10-JUL-2020 DEFINITION Eubucco bourcierii isolate B10K-DU-001-04, whole genome shotgun sequencing project. ACCESSION VWZE00000000 VERSION VWZE00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253768 KEYWORDS WGS. SOURCE Eubucco bourcierii (red-headed barbet) ORGANISM Eubucco bourcierii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Piciformes; Ramphastidae; Eubucco. REFERENCE 1 (bases 1 to 46120) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 46120) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Eubucco bourcierii whole genome shotgun (WGS) project has the project accession VWZE00000000. This version of the project (01) has the accession number VWZE01000000, and consists of sequences VWZE01000001-VWZE01046120. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 38x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..46120 /organism="Eubucco bourcierii" /mol_type="genomic DNA" /isolate="B10K-DU-001-04" /specimen_voucher="USNM:542831" /db_xref="taxon:91767" /sex="female" /tissue_type="muscle" /country="Panama" /lat_lon="8.65 N 82.21 W" /collection_date="07-May-1990" WGS VWZE01000001-VWZE01046120 // LOCUS WBMY01000000 31620 rc DNA linear VRT 10-JUL-2020 DEFINITION Donacobius atricapilla isolate B10K-DU-001-63, whole genome shotgun sequencing project. ACCESSION WBMY00000000 VERSION WBMY00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253813 KEYWORDS WGS. SOURCE Donacobius atricapilla ORGANISM Donacobius atricapilla Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Mimidae; Donacobius. REFERENCE 1 (bases 1 to 31620) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 31620) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (29-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Donacobius atricapilla whole genome shotgun (WGS) project has the project accession WBMY00000000. This version of the project (01) has the accession number WBMY01000000, and consists of sequences WBMY01000001-WBMY01031620. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 49x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..31620 /organism="Donacobius atricapilla" /mol_type="genomic DNA" /isolate="B10K-DU-001-63" /specimen_voucher="USNM:626099" /db_xref="taxon:237420" /sex="female" /tissue_type="muscle" /country="Guyana" /lat_lon="6.57 N 58.08 W" /collection_date="15-Mar-2000" WGS WBMY01000001-WBMY01031620 // LOCUS WBNA01000000 6429 rc DNA linear VRT 10-JUL-2020 DEFINITION Nothocercus nigrocapillus isolate B10K-MSB-02, whole genome shotgun sequencing project. ACCESSION WBNA00000000 VERSION WBNA00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253973 KEYWORDS WGS. SOURCE Nothocercus nigrocapillus ORGANISM Nothocercus nigrocapillus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Tinamiformes; Tinamidae; Nothocercus. REFERENCE 1 (bases 1 to 6429) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 6429) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (29-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Nothocercus nigrocapillus whole genome shotgun (WGS) project has the project accession WBNA00000000. This version of the project (01) has the accession number WBNA01000000, and consists of sequences WBNA01000001-WBNA01006429. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 80x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..6429 /organism="Nothocercus nigrocapillus" /mol_type="genomic DNA" /isolate="B10K-MSB-02" /db_xref="taxon:1977171" /sex="female" /country="Peru" WGS WBNA01000001-WBNA01006429 // LOCUS VWZB01000000 12634 rc DNA linear VRT 10-JUL-2020 DEFINITION Nyctibius bracteatus isolate B10K-CU-031-10, whole genome shotgun sequencing project. ACCESSION VWZB00000000 VERSION VWZB00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253753 KEYWORDS WGS. SOURCE Nyctibius bracteatus (Rufous potoo) ORGANISM Nyctibius bracteatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Caprimulgimorphae; Caprimulgiformes; Nyctibiidae; Nyctibius. REFERENCE 1 (bases 1 to 12634) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 12634) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Nyctibius bracteatus whole genome shotgun (WGS) project has the project accession VWZB00000000. This version of the project (01) has the accession number VWZB01000000, and consists of sequences VWZB01000001-VWZB01012634. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 59x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..12634 /organism="Nyctibius bracteatus" /mol_type="genomic DNA" /isolate="B10K-CU-031-10" /specimen_voucher="LSUMZ:Ornithology:B4509" /db_xref="taxon:48426" /sex="female" /tissue_type="muscle" /country="Peru" /lat_lon="3.08 S 73.14 W" /collection_date="26-Jun-1983" WGS VWZB01000001-VWZB01012634 // LOCUS VZTH01000000 33566 rc DNA linear VRT 10-JUL-2020 DEFINITION Aleadryas rufinucha isolate B10K-DU-029-36, whole genome shotgun sequencing project. ACCESSION VZTH00000000 VERSION VZTH00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253938 KEYWORDS WGS. SOURCE Aleadryas rufinucha (rufous-naped whistler) ORGANISM Aleadryas rufinucha Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Pachycephalidae; Aleadryas. REFERENCE 1 (bases 1 to 33566) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 33566) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Aleadryas rufinucha whole genome shotgun (WGS) project has the project accession VZTH00000000. This version of the project (01) has the accession number VZTH01000000, and consists of sequences VZTH01000001-VZTH01033566. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 45x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..33566 /organism="Aleadryas rufinucha" /mol_type="genomic DNA" /isolate="B10K-DU-029-36" /db_xref="taxon:461220" /sex="male" /tissue_type="muscle" /country="Papua New Guinea" /lat_lon="9.12 S 148.22 E" /collection_date="01-Aug-1987" WGS VZTH01000001-VZTH01033566 // LOCUS VWPS01000000 4051 rc DNA linear VRT 10-JUL-2020 DEFINITION Menura novaehollandiae isolate B10K-CU-030-46, whole genome shotgun sequencing project. ACCESSION VWPS00000000 VERSION VWPS00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253747 KEYWORDS WGS. SOURCE Menura novaehollandiae (superb lyrebird) ORGANISM Menura novaehollandiae Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Menuridae; Menura. REFERENCE 1 (bases 1 to 4051) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 4051) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Menura novaehollandiae whole genome shotgun (WGS) project has the project accession VWPS00000000. This version of the project (01) has the accession number VWPS01000000, and consists of sequences VWPS01000001-VWPS01004051. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 60x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..4051 /organism="Menura novaehollandiae" /mol_type="genomic DNA" /isolate="B10K-CU-030-46" /specimen_voucher="USNM:632118" /db_xref="taxon:47692" /sex="male" /tissue_type="muscle" /country="Australia" /lat_lon="30.07 S 152.65 E" /collection_date="10-Dec-2000" WGS VWPS01000001-VWPS01004051 // LOCUS VWPR01000000 9399 rc DNA linear VRT 10-JUL-2020 DEFINITION Ardeotis kori isolate B10K-CU-031-01, whole genome shotgun sequencing project. ACCESSION VWPR00000000 VERSION VWPR00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253748 KEYWORDS WGS. SOURCE Ardeotis kori ORGANISM Ardeotis kori Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Otididae; Ardeotis. REFERENCE 1 (bases 1 to 9399) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 9399) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Ardeotis kori whole genome shotgun (WGS) project has the project accession VWPR00000000. This version of the project (01) has the accession number VWPR01000000, and consists of sequences VWPR01000001-VWPR01009399. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 57x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..9399 /organism="Ardeotis kori" /mol_type="genomic DNA" /isolate="B10K-CU-031-01" /specimen_voucher="LSUMZ:Ornithology:B58791" /db_xref="taxon:89386" /sex="female" /tissue_type="muscle" WGS VWPR01000001-VWPR01009399 // LOCUS WBNL01000000 10673 rc DNA linear VRT 10-JUL-2020 DEFINITION Calcarius ornatus isolate B10K-DU-015-28, whole genome shotgun sequencing project. ACCESSION WBNL00000000 VERSION WBNL00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253923 KEYWORDS WGS. SOURCE Calcarius ornatus ORGANISM Calcarius ornatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Fringillidae; Emberizinae; Emberizini; Calcarius. REFERENCE 1 (bases 1 to 10673) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 10673) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (25-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Calcarius ornatus whole genome shotgun (WGS) project has the project accession WBNL00000000. This version of the project (01) has the accession number WBNL01000000, and consists of sequences WBNL01000001-WBNL01010673. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 73x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..10673 /organism="Calcarius ornatus" /mol_type="genomic DNA" /isolate="B10K-DU-015-28" /specimen_voucher="USNM:641413" /db_xref="taxon:198940" /sex="male" /tissue_type="muscle" /country="Canada" /lat_lon="51.09 N 111.26 W" /collection_date="22-Jul-2007" WGS WBNL01000001-WBNL01010673 // LOCUS VWZA01000000 8405 rc DNA linear VRT 10-JUL-2020 DEFINITION Oceanites oceanicus isolate B10K-CU-031-11, whole genome shotgun sequencing project. ACCESSION VWZA00000000 VERSION VWZA00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253754 KEYWORDS WGS. SOURCE Oceanites oceanicus (Wilson's storm-petrel) ORGANISM Oceanites oceanicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Procellariiformes; Hydrobatidae; Oceanites. REFERENCE 1 (bases 1 to 8405) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 8405) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Oceanites oceanicus whole genome shotgun (WGS) project has the project accession VWZA00000000. This version of the project (01) has the accession number VWZA01000000, and consists of sequences VWZA01000001-VWZA01008405. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 67x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..8405 /organism="Oceanites oceanicus" /mol_type="genomic DNA" /isolate="B10K-CU-031-11" /specimen_voucher="LSUMZ:Ornithology:B46846" /db_xref="taxon:79653" /sex="female" /tissue_type="muscle" /country="USA" /lat_lon="28.54 N 88.95 W" /collection_date="26-May-2005" WGS VWZA01000001-VWZA01008405 // LOCUS VWYZ01000000 5052 rc DNA linear VRT 10-JUL-2020 DEFINITION Rhodinocichla rosea isolate B10K-CU-031-12, whole genome shotgun sequencing project. ACCESSION VWYZ00000000 VERSION VWYZ00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253755 KEYWORDS WGS. SOURCE Rhodinocichla rosea ORGANISM Rhodinocichla rosea Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Thraupidae; Rhodinocichla. REFERENCE 1 (bases 1 to 5052) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 5052) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Rhodinocichla rosea whole genome shotgun (WGS) project has the project accession VWYZ00000000. This version of the project (01) has the accession number VWYZ01000000, and consists of sequences VWYZ01000001-VWYZ01005052. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 67x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..5052 /organism="Rhodinocichla rosea" /mol_type="genomic DNA" /isolate="B10K-CU-031-12" /specimen_voucher="LSUMZ:Ornithology:B26906" /db_xref="taxon:58203" /sex="male" /tissue_type="muscle" /country="Panama" /lat_lon="9.06 N 79.60 W" /collection_date="14-Mar-1996" WGS VWYZ01000001-VWYZ01005052 // LOCUS VWYY01000000 11358 rc DNA linear VRT 10-JUL-2020 DEFINITION Ptilorrhoa leucosticta isolate B10K-CU-031-17, whole genome shotgun sequencing project. ACCESSION VWYY00000000 VERSION VWYY00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253757 KEYWORDS WGS. SOURCE Ptilorrhoa leucosticta ORGANISM Ptilorrhoa leucosticta Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Cinclosomatidae; Ptilorrhoa. REFERENCE 1 (bases 1 to 11358) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 11358) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Ptilorrhoa leucosticta whole genome shotgun (WGS) project has the project accession VWYY00000000. This version of the project (01) has the accession number VWYY01000000, and consists of sequences VWYY01000001-VWYY01011358. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 66x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..11358 /organism="Ptilorrhoa leucosticta" /mol_type="genomic DNA" /isolate="B10K-CU-031-17" /specimen_voucher="C:138661" /db_xref="taxon:449384" /sex="female" /tissue_type="muscle" /country="Papua New Guinea" /lat_lon="5.76 S 145.19 E" /collection_date="10-Oct-2015" WGS VWYY01000001-VWYY01011358 // LOCUS VWYX01000000 7933 rc DNA linear VRT 10-JUL-2020 DEFINITION Chaetorhynchus papuensis isolate B10K-CU-031-19, whole genome shotgun sequencing project. ACCESSION VWYX00000000 VERSION VWYX00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253758 KEYWORDS WGS. SOURCE Chaetorhynchus papuensis (pygmy drongo) ORGANISM Chaetorhynchus papuensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Rhipiduridae; Chaetorhynchus. REFERENCE 1 (bases 1 to 7933) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 7933) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Chaetorhynchus papuensis whole genome shotgun (WGS) project has the project accession VWYX00000000. This version of the project (01) has the accession number VWYX01000000, and consists of sequences VWYX01000001-VWYX01007933. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 69x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..7933 /organism="Chaetorhynchus papuensis" /mol_type="genomic DNA" /isolate="B10K-CU-031-19" /specimen_voucher="C:163925" /db_xref="taxon:254446" /tissue_type="muscle" /country="Papua New Guinea" /lat_lon="5.72 S 145.27 E" /collection_date="12-Oct-2015" WGS VWYX01000001-VWYX01007933 // LOCUS VWYW01000000 7272 rc DNA linear VRT 10-JUL-2020 DEFINITION Smithornis capensis isolate B10K-CU-031-20, whole genome shotgun sequencing project. ACCESSION VWYW00000000 VERSION VWYW00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253759 KEYWORDS WGS. SOURCE Smithornis capensis ORGANISM Smithornis capensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Eurylaimidae; Smithornis. REFERENCE 1 (bases 1 to 7272) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 7272) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Smithornis capensis whole genome shotgun (WGS) project has the project accession VWYW00000000. This version of the project (01) has the accession number VWYW01000000, and consists of sequences VWYW01000001-VWYW01007272. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 68x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..7272 /organism="Smithornis capensis" /mol_type="genomic DNA" /isolate="B10K-CU-031-20" /specimen_voucher="C:138652" /db_xref="taxon:363769" /country="Tanzania" /lat_lon="7.80 S 46.50 E" /collection_date="01-Jan-2007" WGS VWYW01000001-VWYW01007272 // LOCUS VWPT01000000 3215 rc DNA linear VRT 10-JUL-2020 DEFINITION Casuarius casuarius isolate B10K-LSUMZ-50683, whole genome shotgun sequencing project. ACCESSION VWPT00000000 VERSION VWPT00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253744 KEYWORDS WGS. SOURCE Casuarius casuarius (southern cassowary) ORGANISM Casuarius casuarius Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Casuariiformes; Casuariidae; Casuarius. REFERENCE 1 (bases 1 to 3215) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 3215) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Casuarius casuarius whole genome shotgun (WGS) project has the project accession VWPT00000000. This version of the project (01) has the accession number VWPT01000000, and consists of sequences VWPT01000001-VWPT01003215. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 70x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..3215 /organism="Casuarius casuarius" /mol_type="genomic DNA" /isolate="B10K-LSUMZ-50683" /specimen_voucher="LSUMZ:Ornithology:B50683" /db_xref="taxon:8787" /sex="female" /tissue_type="muscle" /country="Peru: Lima" WGS VWPT01000001-VWPT01003215 // LOCUS VWYV01000000 4986 rc DNA linear VRT 10-JUL-2020 DEFINITION Lophotis ruficrista isolate B10K-CU-031-23, whole genome shotgun sequencing project. ACCESSION VWYV00000000 VERSION VWYV00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253761 KEYWORDS WGS. SOURCE Lophotis ruficrista ORGANISM Lophotis ruficrista Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Otididae; Lophotis. REFERENCE 1 (bases 1 to 4986) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 4986) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Lophotis ruficrista whole genome shotgun (WGS) project has the project accession VWYV00000000. This version of the project (01) has the accession number VWYV01000000, and consists of sequences VWYV01000001-VWYV01004986. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 60x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..4986 /organism="Lophotis ruficrista" /mol_type="genomic DNA" /isolate="B10K-CU-031-23" /specimen_voucher="UWBM:95093" /db_xref="taxon:172689" /sex="male" /country="South Africa" /lat_lon="28.97 S 24.72 E" /collection_date="02-Aug-2000" WGS VWYV01000001-VWYV01004986 // LOCUS WBMX01000000 36534 rc DNA linear VRT 10-JUL-2020 DEFINITION Corythaeola cristata isolate B10K-CU-031-40, whole genome shotgun sequencing project. ACCESSION WBMX00000000 VERSION WBMX00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253763 KEYWORDS WGS. SOURCE Corythaeola cristata (great blue turaco) ORGANISM Corythaeola cristata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Musophagiformes; Musophagidae; Corythaeola. REFERENCE 1 (bases 1 to 36534) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 36534) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (29-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Corythaeola cristata whole genome shotgun (WGS) project has the project accession WBMX00000000. This version of the project (01) has the accession number WBMX01000000, and consists of sequences WBMX01000001-WBMX01036534. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 75x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..36534 /organism="Corythaeola cristata" /mol_type="genomic DNA" /isolate="B10K-CU-031-40" /specimen_voucher="FMNH:AVES:357942" /db_xref="taxon:103954" /sex="male" /country="Burundi" /lat_lon="2.89 S 29.12 E" /collection_date="31-Jul-1991" WGS WBMX01000001-WBMX01036534 // LOCUS WBNF01000000 2993 rc DNA linear VRT 10-JUL-2020 DEFINITION Corvus moneduloides isolate OUT-0060, whole genome shotgun sequencing project. ACCESSION WBNF00000000 VERSION WBNF00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12254009 KEYWORDS WGS. SOURCE Corvus moneduloides (New Caledonian crow) ORGANISM Corvus moneduloides Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Corvidae; Corvus. REFERENCE 1 (bases 1 to 2993) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 2993) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (29-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Corvus moneduloides whole genome shotgun (WGS) project has the project accession WBNF00000000. This version of the project (01) has the accession number WBNF01000000, and consists of sequences WBNF01000001-WBNF01002993. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 49184 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 99x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..2993 /organism="Corvus moneduloides" /mol_type="genomic DNA" /isolate="OUT-0060" /db_xref="taxon:1196302" /sex="female" /tissue_type="blood" /country="New Caledonia" /lat_lon="21.57 S 167.96 E" WGS WBNF01000001-WBNF01002993 // LOCUS WBNC01000000 30287 rc DNA linear VRT 10-JUL-2020 DEFINITION Certhia familiaris isolate OUT-0039, whole genome shotgun sequencing project. ACCESSION WBNC00000000 VERSION WBNC00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253998 KEYWORDS WGS. SOURCE Certhia familiaris (Eurasian tree-creeper) ORGANISM Certhia familiaris Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Certhiidae; Certhiinae; Certhia. REFERENCE 1 (bases 1 to 30287) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 30287) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (29-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Certhia familiaris whole genome shotgun (WGS) project has the project accession WBNC00000000. This version of the project (01) has the accession number WBNC01000000, and consists of sequences WBNC01000001-WBNC01030287. ##Genome-Assembly-Data-START## Assembly Method :: SuperNova v. NA Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 64x Sequencing Technology :: 10X Genomics linked reads ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..30287 /organism="Certhia familiaris" /mol_type="genomic DNA" /isolate="OUT-0039" /specimen_voucher="SNSD:Ornithologie:MTD-C65320" /db_xref="taxon:73333" /sex="male" /tissue_type="muscle" /country="Germany" /lat_lon="49.64 N 8.34 E" /collection_date="07-Sep-2015" WGS WBNC01000001-WBNC01030287 // LOCUS VZSU01000000 15602 rc DNA linear VRT 10-JUL-2020 DEFINITION Nesospiza acunhae isolate OUT-0053, whole genome shotgun sequencing project. ACCESSION VZSU00000000 VERSION VZSU00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12254004 KEYWORDS WGS. SOURCE Nesospiza acunhae ORGANISM Nesospiza acunhae Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Thraupidae; Nesospiza. REFERENCE 1 (bases 1 to 15602) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 15602) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (10-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Nesospiza acunhae whole genome shotgun (WGS) project has the project accession VZSU00000000. This version of the project (01) has the accession number VZSU01000000, and consists of sequences VZSU01000001-VZSU01015602. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2011 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 110x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..15602 /organism="Nesospiza acunhae" /mol_type="genomic DNA" /isolate="OUT-0053" /db_xref="taxon:381881" /sex="female" /tissue_type="muscle" /country="United Kingdom" /lat_lon="37.29 S 12.70 W" /collection_date="Sep-2011" WGS VZSU01000001-VZSU01015602 // LOCUS WBNJ01000000 3702 rc DNA linear VRT 10-JUL-2020 DEFINITION Halcyon senegalensis isolate B10K-DU-024-03, whole genome shotgun sequencing project. ACCESSION WBNJ00000000 VERSION WBNJ00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253930 KEYWORDS WGS. SOURCE Halcyon senegalensis ORGANISM Halcyon senegalensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Coraciiformes; Alcedinidae; Halcyon. REFERENCE 1 (bases 1 to 3702) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 3702) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (27-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Halcyon senegalensis whole genome shotgun (WGS) project has the project accession WBNJ00000000. This version of the project (01) has the accession number WBNJ01000000, and consists of sequences WBNJ01000001-WBNJ01003702. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 68x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..3702 /organism="Halcyon senegalensis" /mol_type="genomic DNA" /isolate="B10K-DU-024-03" /specimen_voucher="USNM:642956" /db_xref="taxon:342381" /sex="male" /tissue_type="muscle" /country="Gabon" /lat_lon="0.61 N 9.32 E" /collection_date="03-Nov-2009" WGS WBNJ01000001-WBNJ01003702 // LOCUS WBNE01000000 4021 rc DNA linear VRT 10-JUL-2020 DEFINITION Copsychus sechellarum isolate OUT-0061, whole genome shotgun sequencing project. ACCESSION WBNE00000000 VERSION WBNE00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12254010 KEYWORDS WGS. SOURCE Copsychus sechellarum ORGANISM Copsychus sechellarum Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Muscicapidae; Copsychus. REFERENCE 1 (bases 1 to 4021) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 4021) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (29-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Copsychus sechellarum whole genome shotgun (WGS) project has the project accession WBNE00000000. This version of the project (01) has the accession number WBNE01000000, and consists of sequences WBNE01000001-WBNE01004021. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 49184 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 374x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..4021 /organism="Copsychus sechellarum" /mol_type="genomic DNA" /isolate="OUT-0061" /db_xref="taxon:797021" /sex="female" /tissue_type="blood" /country="Seychelles" /lat_lon="4.33 S 55.39 E" /collection_date="Mar-2015" WGS WBNE01000001-WBNE01004021 // LOCUS WBMU01000000 10030 rc DNA linear VRT 10-JUL-2020 DEFINITION Anhinga anhinga isolate B10K-CU-031-38, whole genome shotgun sequencing project. ACCESSION WBMU00000000 VERSION WBMU00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253762 KEYWORDS WGS. SOURCE Anhinga anhinga (American anhinga) ORGANISM Anhinga anhinga Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Pelecaniformes; Anhingidae; Anhinga. REFERENCE 1 (bases 1 to 10030) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 10030) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (29-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Anhinga anhinga whole genome shotgun (WGS) project has the project accession WBMU00000000. This version of the project (01) has the accession number WBMU01000000, and consists of sequences WBMU01000001-WBMU01010030. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 52x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..10030 /organism="Anhinga anhinga" /mol_type="genomic DNA" /isolate="B10K-CU-031-38" /specimen_voucher="FMNH:AVES:493807" /db_xref="taxon:56067" /sex="male" /country="USA" /lat_lon="27.17 N 80.27 W" /collection_date="25-May-2013" WGS WBMU01000001-WBMU01010030 // LOCUS WBND01000000 6008 rc DNA linear VRT 10-JUL-2020 DEFINITION Cercotrichas coryphoeus isolate OUT-0024, whole genome shotgun sequencing project. ACCESSION WBND00000000 VERSION WBND00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253994 KEYWORDS WGS. SOURCE Cercotrichas coryphoeus (Karoo scrub-robin) ORGANISM Cercotrichas coryphoeus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Muscicapidae; Cercotrichas. REFERENCE 1 (bases 1 to 6008) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 6008) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (29-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Cercotrichas coryphoeus whole genome shotgun (WGS) project has the project accession WBND00000000. This version of the project (01) has the accession number WBND01000000, and consists of sequences WBND01000001-WBND01006008. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 49184 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 320x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..6008 /organism="Cercotrichas coryphoeus" /mol_type="genomic DNA" /isolate="OUT-0024" /db_xref="taxon:614051" /tissue_type="muscle, pectoral" /country="South Africa" /lat_lon="30.62 S 24.58 E" /collection_date="23-Jun-2007" WGS WBND01000001-WBND01006008 // LOCUS WBNB01000000 3351 rc DNA linear VRT 10-JUL-2020 DEFINITION Vidua chalybeata isolate OUT-0048, whole genome shotgun sequencing project. ACCESSION WBNB00000000 VERSION WBNB00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12254000 KEYWORDS WGS. SOURCE Vidua chalybeata ORGANISM Vidua chalybeata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Viduinae; Vidua. REFERENCE 1 (bases 1 to 3351) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 3351) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (29-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Vidua chalybeata whole genome shotgun (WGS) project has the project accession WBNB00000000. This version of the project (01) has the accession number WBNB01000000, and consists of sequences WBNB01000001-WBNB01003351. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG; PBJELLY; PILON; SSPACE v. 50081;15.8.24; 1.16; 3.0 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 81x Sequencing Technology :: ILLUMINA; PACBIO_SMRT ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..3351 /organism="Vidua chalybeata" /mol_type="genomic DNA" /isolate="OUT-0048" /specimen_voucher="MSB:Bird:30254" /db_xref="taxon:81927" /sex="female" /tissue_type="muscle" /country="South Africa" /lat_lon="28.04 S 26.29 E" /collection_date="16-Jan-2011" WGS WBNB01000001-WBNB01003351 // LOCUS VZTJ01000000 11336 rc DNA linear VRT 10-JUL-2020 DEFINITION Orthonyx spaldingii isolate B10K-DU-029-32, whole genome shotgun sequencing project. ACCESSION VZTJ00000000 VERSION VZTJ00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253936 KEYWORDS WGS. SOURCE Orthonyx spaldingii (northern chowchilla) ORGANISM Orthonyx spaldingii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Orthonychidae; Orthonyx. REFERENCE 1 (bases 1 to 11336) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 11336) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Orthonyx spaldingii whole genome shotgun (WGS) project has the project accession VZTJ00000000. This version of the project (01) has the accession number VZTJ01000000, and consists of sequences VZTJ01000001-VZTJ01011336. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 46x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..11336 /organism="Orthonyx spaldingii" /mol_type="genomic DNA" /isolate="B10K-DU-029-32" /db_xref="taxon:38397" /sex="male" /tissue_type="liver or heart" /country="Australia" /lat_lon="16.97 S 145.47 E" /collection_date="09-Jul-1985" WGS VZTJ01000001-VZTJ01011336 // LOCUS WBMW01000000 12091 rc DNA linear VRT 10-JUL-2020 DEFINITION Penelope pileata isolate B10K-DU-001-08, whole genome shotgun sequencing project. ACCESSION WBMW00000000 VERSION WBMW00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253771 KEYWORDS WGS. SOURCE Penelope pileata ORGANISM Penelope pileata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Cracidae; Penelope. REFERENCE 1 (bases 1 to 12091) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 12091) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (29-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Penelope pileata whole genome shotgun (WGS) project has the project accession WBMW00000000. This version of the project (01) has the accession number WBMW01000000, and consists of sequences WBMW01000001-WBMW01012091. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 48x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..12091 /organism="Penelope pileata" /mol_type="genomic DNA" /isolate="B10K-DU-001-08" /specimen_voucher="USNM:572502" /db_xref="taxon:1118817" /sex="male" /tissue_type="muscle" /country="Brazil" /lat_lon="3.65 S 52.37 W" /collection_date="31-Aug-1986" WGS WBMW01000001-WBMW01012091 // LOCUS VZTI01000000 10902 rc DNA linear VRT 10-JUL-2020 DEFINITION Struthidea cinerea isolate B10K-DU-029-33, whole genome shotgun sequencing project. ACCESSION VZTI00000000 VERSION VZTI00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253937 KEYWORDS WGS. SOURCE Struthidea cinerea ORGANISM Struthidea cinerea Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Corcoracidae; Struthidea. REFERENCE 1 (bases 1 to 10902) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 10902) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Struthidea cinerea whole genome shotgun (WGS) project has the project accession VZTI00000000. This version of the project (01) has the accession number VZTI01000000, and consists of sequences VZTI01000001-VZTI01010902. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 45x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..10902 /organism="Struthidea cinerea" /mol_type="genomic DNA" /isolate="B10K-DU-029-33" /db_xref="taxon:181839" /sex="male" /tissue_type="heart" /country="Australia" /lat_lon="34.75 S 147.88 E" /collection_date="1985" WGS VZTI01000001-VZTI01010902 // LOCUS VZTF01000000 17495 rc DNA linear VRT 10-JUL-2020 DEFINITION Cnemophilus loriae isolate B10K-DU-029-38, whole genome shotgun sequencing project. ACCESSION VZTF00000000 VERSION VZTF00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253940 KEYWORDS WGS. SOURCE Cnemophilus loriae (Loria's bird-of-paradise) ORGANISM Cnemophilus loriae Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Corvidae; Cnemophilus. REFERENCE 1 (bases 1 to 17495) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 17495) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Cnemophilus loriae whole genome shotgun (WGS) project has the project accession VZTF00000000. This version of the project (01) has the accession number VZTF01000000, and consists of sequences VZTF01000001-VZTF01017495. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 46x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..17495 /organism="Cnemophilus loriae" /mol_type="genomic DNA" /isolate="B10K-DU-029-38" /db_xref="taxon:254448" /sex="female" /tissue_type="muscle" /country="Papua New Guinea" /lat_lon="9.12 S 148.22 E" /collection_date="02-Aug-1987" WGS VZTF01000001-VZTF01017495 // LOCUS VZTE01000000 11293 rc DNA linear VRT 10-JUL-2020 DEFINITION Eulacestoma nigropectus isolate B10K-DU-029-39, whole genome shotgun sequencing project. ACCESSION VZTE00000000 VERSION VZTE00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253941 KEYWORDS WGS. SOURCE Eulacestoma nigropectus (wattled ploughbill) ORGANISM Eulacestoma nigropectus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Pachycephalidae; Eulacestoma. REFERENCE 1 (bases 1 to 11293) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 11293) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Eulacestoma nigropectus whole genome shotgun (WGS) project has the project accession VZTE00000000. This version of the project (01) has the accession number VZTE01000000, and consists of sequences VZTE01000001-VZTE01011293. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 44x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..11293 /organism="Eulacestoma nigropectus" /mol_type="genomic DNA" /isolate="B10K-DU-029-39" /db_xref="taxon:461239" /sex="male" /tissue_type="heart or muscle" /country="Papua New Guinea" /lat_lon="9.12 S 148.22 E" /collection_date="02-Aug-1987" WGS VZTE01000001-VZTE01011293 // LOCUS VZTD01000000 10891 rc DNA linear VRT 10-JUL-2020 DEFINITION Rhagologus leucostigma isolate B10K-DU-029-40, whole genome shotgun sequencing project. ACCESSION VZTD00000000 VERSION VZTD00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253942 KEYWORDS WGS. SOURCE Rhagologus leucostigma ORGANISM Rhagologus leucostigma Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Pachycephalidae; Rhagologus. REFERENCE 1 (bases 1 to 10891) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 10891) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Rhagologus leucostigma whole genome shotgun (WGS) project has the project accession VZTD00000000. This version of the project (01) has the accession number VZTD01000000, and consists of sequences VZTD01000001-VZTD01010891. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 49x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..10891 /organism="Rhagologus leucostigma" /mol_type="genomic DNA" /isolate="B10K-DU-029-40" /db_xref="taxon:156170" /sex="male" /tissue_type="muscle" /country="Papua New Guinea" /lat_lon="9.12 S 148.22 E" /collection_date="02-Aug-1987" WGS VZTD01000001-VZTD01010891 // LOCUS VZTC01000000 17982 rc DNA linear VRT 10-JUL-2020 DEFINITION Leucopsar rothschildi isolate B10K-DU-002-02, whole genome shotgun sequencing project. ACCESSION VZTC00000000 VERSION VZTC00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253829 KEYWORDS WGS. SOURCE Leucopsar rothschildi ORGANISM Leucopsar rothschildi Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sturnidae; Leucopsar. REFERENCE 1 (bases 1 to 17982) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 17982) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (19-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Leucopsar rothschildi whole genome shotgun (WGS) project has the project accession VZTC00000000. This version of the project (01) has the accession number VZTC01000000, and consists of sequences VZTC01000001-VZTC01017982. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 43x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..17982 /organism="Leucopsar rothschildi" /mol_type="genomic DNA" /isolate="B10K-DU-002-02" /specimen_voucher="USNM:631788" /db_xref="taxon:127929" /sex="female" /tissue_type="muscle" /collection_date="27-Aug-2002" WGS VZTC01000001-VZTC01017982 // LOCUS VZTB01000000 37520 rc DNA linear VRT 10-JUL-2020 DEFINITION Thryothorus ludovicianus isolate B10K-DU-001-68, whole genome shotgun sequencing project. ACCESSION VZTB00000000 VERSION VZTB00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253818 KEYWORDS WGS. SOURCE Thryothorus ludovicianus (Carolina wren) ORGANISM Thryothorus ludovicianus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Certhiidae; Troglodytinae; Thryothorus. REFERENCE 1 (bases 1 to 37520) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 37520) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (12-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Thryothorus ludovicianus whole genome shotgun (WGS) project has the project accession VZTB00000000. This version of the project (01) has the accession number VZTB01000000, and consists of sequences VZTB01000001-VZTB01037520. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 46x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..37520 /organism="Thryothorus ludovicianus" /mol_type="genomic DNA" /isolate="B10K-DU-001-68" /specimen_voucher="USNM:626484" /db_xref="taxon:74200" /sex="female" /tissue_type="muscle" /country="USA" /lat_lon="30.64 N 86.55 W" /collection_date="03-May-2001" WGS VZTB01000001-VZTB01037520 // LOCUS VZSP01000000 42265 rc DNA linear VRT 10-JUL-2020 DEFINITION Agelaius phoeniceus isolate OUT-0050, whole genome shotgun sequencing project. ACCESSION VZSP00000000 VERSION VZSP00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12254002 KEYWORDS WGS. SOURCE Agelaius phoeniceus (red-winged blackbird) ORGANISM Agelaius phoeniceus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Icteridae; Agelaius. REFERENCE 1 (bases 1 to 42265) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 42265) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (10-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Agelaius phoeniceus whole genome shotgun (WGS) project has the project accession VZSP00000000. This version of the project (01) has the accession number VZSP01000000, and consists of sequences VZSP01000001-VZSP01042265. ##Genome-Assembly-Data-START## Assembly Method :: SuperNova v. 1 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 120x Sequencing Technology :: 10X Genomics linked reads ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..42265 /organism="Agelaius phoeniceus" /mol_type="genomic DNA" /isolate="OUT-0050" /specimen_voucher="MSB:Bird:45213" /db_xref="taxon:39638" /sex="female" /tissue_type="muscle" /country="USA" /lat_lon="36.73 N 108.33 W" /collection_date="16-Jul-2015" WGS VZSP01000001-VZSP01042265 // LOCUS VZSZ01000000 22425 rc DNA linear VRT 10-JUL-2020 DEFINITION Ibidorhyncha struthersii isolate B10K-DU-030-25, whole genome shotgun sequencing project. ACCESSION VZSZ00000000 VERSION VZSZ00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253964 KEYWORDS WGS. SOURCE Ibidorhyncha struthersii ORGANISM Ibidorhyncha struthersii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Charadriidae; Ibidorhyncha. REFERENCE 1 (bases 1 to 22425) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 22425) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Ibidorhyncha struthersii whole genome shotgun (WGS) project has the project accession VZSZ00000000. This version of the project (01) has the accession number VZSZ01000000, and consists of sequences VZSZ01000001-VZSZ01022425. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 47x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..22425 /organism="Ibidorhyncha struthersii" /mol_type="genomic DNA" /isolate="B10K-DU-030-25" /specimen_voucher="IZCAS:2150" /db_xref="taxon:425643" /sex="male" /country="China" /lat_lon="33.52 N 107.99 E" WGS VZSZ01000001-VZSZ01022425 // LOCUS VZTA01000000 46774 rc DNA linear VRT 10-JUL-2020 DEFINITION Mohoua ochrocephala isolate B10K-DU-030-22, whole genome shotgun sequencing project. ACCESSION VZTA00000000 VERSION VZTA00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253963 KEYWORDS WGS. SOURCE Mohoua ochrocephala ORGANISM Mohoua ochrocephala Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Meliphagoidea; Acanthizidae; Mohoua. REFERENCE 1 (bases 1 to 46774) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 46774) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Mohoua ochrocephala whole genome shotgun (WGS) project has the project accession VZTA00000000. This version of the project (01) has the accession number VZTA01000000, and consists of sequences VZTA01000001-VZTA01046774. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 35x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..46774 /organism="Mohoua ochrocephala" /mol_type="genomic DNA" /isolate="B10K-DU-030-22" /specimen_voucher="OTA:MR-006" /db_xref="taxon:874463" /tissue_type="blood" /country="New Zealand" /lat_lon="45.58 S 166.64 E" /collection_date="12-Mar-2008" WGS VZTA01000001-VZTA01046774 // LOCUS VZSY01000000 9986 rc DNA linear VRT 10-JUL-2020 DEFINITION Sapayoa aenigma isolate B10K-DU-030-41, whole genome shotgun sequencing project. ACCESSION VZSY00000000 VERSION VZSY00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253965 KEYWORDS WGS. SOURCE Sapayoa aenigma (broad-billed sapayoa) ORGANISM Sapayoa aenigma Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Tyrannidae; Sapayoa. REFERENCE 1 (bases 1 to 9986) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 9986) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Sapayoa aenigma whole genome shotgun (WGS) project has the project accession VZSY00000000. This version of the project (01) has the accession number VZSY01000000, and consists of sequences VZSY01000001-VZSY01009986. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 94x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..9986 /organism="Sapayoa aenigma" /mol_type="genomic DNA" /isolate="B10K-DU-030-41" /specimen_voucher="LSUMZ:Ornithology:B2333" /db_xref="taxon:239371" /sex="male" /tissue_type="muscle" /country="Panama" /lat_lon="7.79 N 77.54 W" /collection_date="16-Aug-1982" WGS VZSY01000001-VZSY01009986 // LOCUS VZSX01000000 2568 rc DNA linear VRT 10-JUL-2020 DEFINITION Eudromia elegans isolate B10K-LSUMZ-16893, whole genome shotgun sequencing project. ACCESSION VZSX00000000 VERSION VZSX00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253968 KEYWORDS WGS. SOURCE Eudromia elegans (elegant crested-tinamou) ORGANISM Eudromia elegans Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Tinamiformes; Tinamidae; Eudromia. REFERENCE 1 (bases 1 to 2568) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 2568) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Eudromia elegans whole genome shotgun (WGS) project has the project accession VZSX00000000. This version of the project (01) has the accession number VZSX01000000, and consists of sequences VZSX01000001-VZSX01002568. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 84x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..2568 /organism="Eudromia elegans" /mol_type="genomic DNA" /isolate="B10K-LSUMZ-16893" /specimen_voucher="LSUMZ:Ornithology:B16893" /db_xref="taxon:8805" /sex="female" /country="Argentina" WGS VZSX01000001-VZSX01002568 // LOCUS VZSV01000000 4965 rc DNA linear VRT 10-JUL-2020 DEFINITION Nothocercus julius isolate B10K-MSB-01, whole genome shotgun sequencing project. ACCESSION VZSV00000000 VERSION VZSV00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253972 KEYWORDS WGS. SOURCE Nothocercus julius ORGANISM Nothocercus julius Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Tinamiformes; Tinamidae; Nothocercus. REFERENCE 1 (bases 1 to 4965) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 4965) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Nothocercus julius whole genome shotgun (WGS) project has the project accession VZSV00000000. This version of the project (01) has the accession number VZSV01000000, and consists of sequences VZSV01000001-VZSV01004965. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 77x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..4965 /organism="Nothocercus julius" /mol_type="genomic DNA" /isolate="B10K-MSB-01" /db_xref="taxon:2585813" /sex="female" /country="Peru" WGS VZSV01000001-VZSV01004965 // LOCUS VZST01000000 29468 rc DNA linear VRT 10-JUL-2020 DEFINITION Acrocephalus arundinaceus isolate OUT-0054, whole genome shotgun sequencing project. ACCESSION VZST00000000 VERSION VZST00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12254005 KEYWORDS WGS. SOURCE Acrocephalus arundinaceus (great reed warbler) ORGANISM Acrocephalus arundinaceus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Sylviidae; Acrocephalinae; Acrocephalus. REFERENCE 1 (bases 1 to 29468) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 29468) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (10-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Acrocephalus arundinaceus whole genome shotgun (WGS) project has the project accession VZST00000000. This version of the project (01) has the accession number VZST01000000, and consists of sequences VZST01000001-VZST01029468. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 49184 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 146x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..29468 /organism="Acrocephalus arundinaceus" /mol_type="genomic DNA" /isolate="OUT-0054" /specimen_voucher="personal:Bengt Hansson:3553254(H9-23)" /db_xref="taxon:39621" /sex="male" /tissue_type="blood" /country="Sweden" /lat_lon="59.18 N 15.37 E" /collection_date="12-May-2013" WGS VZST01000001-VZST01029468 // LOCUS VZSS01000000 3149 rc DNA linear VRT 10-JUL-2020 DEFINITION Poecile atricapillus isolate OUT-0023, whole genome shotgun sequencing project. ACCESSION VZSS00000000 VERSION VZSS00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253993 KEYWORDS WGS. SOURCE Poecile atricapillus (Black-capped chickadee) ORGANISM Poecile atricapillus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Paridae; Poecile. REFERENCE 1 (bases 1 to 3149) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 3149) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (10-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Poecile atricapillus whole genome shotgun (WGS) project has the project accession VZSS00000000. This version of the project (01) has the accession number VZSS01000000, and consists of sequences VZSS01000001-VZSS01003149. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 49184 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 101x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..3149 /organism="Poecile atricapillus" /mol_type="genomic DNA" /isolate="OUT-0023" /specimen_voucher="CUMV:Bird:55912" /db_xref="taxon:48891" /sex="male" /tissue_type="blood" /country="USA" /lat_lon="42.48 N 76.45 W" /collection_date="09-Dec-2014" WGS VZSS01000001-VZSS01003149 // LOCUS VZSQ01000000 6418 rc DNA linear VRT 10-JUL-2020 DEFINITION Haliaeetus albicilla isolate OUT-0040, whole genome shotgun sequencing project. ACCESSION VZSQ00000000 VERSION VZSQ00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253999 KEYWORDS WGS. SOURCE Haliaeetus albicilla (white-tailed eagle) ORGANISM Haliaeetus albicilla Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Accipitriformes; Accipitridae; Accipitrinae; Haliaeetus. REFERENCE 1 (bases 1 to 6418) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 6418) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (10-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Haliaeetus albicilla whole genome shotgun (WGS) project has the project accession VZSQ00000000. This version of the project (01) has the accession number VZSQ01000000, and consists of sequences VZSQ01000001-VZSQ01006418. ##Genome-Assembly-Data-START## Assembly Method :: Discovar DeNovo v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 262x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..6418 /organism="Haliaeetus albicilla" /mol_type="genomic DNA" /isolate="OUT-0040" /db_xref="taxon:8969" /sex="male" /tissue_type="blood" /country="Germany" /lat_lon="53.38 N 11.38 E" WGS VZSQ01000001-VZSQ01006418 // LOCUS VZSR01000000 3820 rc DNA linear VRT 10-JUL-2020 DEFINITION Brachypodius atriceps isolate OUT-0037, whole genome shotgun sequencing project. ACCESSION VZSR00000000 VERSION VZSR00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253996 KEYWORDS WGS. SOURCE Brachypodius atriceps (black-headed bulbul) ORGANISM Brachypodius atriceps Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Pycnonotidae; Brachypodius. REFERENCE 1 (bases 1 to 3820) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 3820) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (10-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Brachypodius atriceps whole genome shotgun (WGS) project has the project accession VZSR00000000. This version of the project (01) has the accession number VZSR01000000, and consists of sequences VZSR01000001-VZSR01003820. ##Genome-Assembly-Data-START## Assembly Method :: Meraculous v. NA Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 155x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..3820 /organism="Brachypodius atriceps" /mol_type="genomic DNA" /isolate="OUT-0037" /specimen_voucher="LSUMZ:Ornithology:B50336" /db_xref="taxon:182895" /sex="female" /tissue_type="liver" /country="Malaysia" /lat_lon="5.62 N 117.19 E" /collection_date="16-Aug-2004" WGS VZSR01000001-VZSR01003820 // LOCUS VZSO01000000 9138 rc DNA linear VRT 10-JUL-2020 DEFINITION Asarcornis scutulata isolate OUT-0051, whole genome shotgun sequencing project. ACCESSION VZSO00000000 VERSION VZSO00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12254003 KEYWORDS WGS. SOURCE Asarcornis scutulata ORGANISM Asarcornis scutulata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Asarcornis. REFERENCE 1 (bases 1 to 9138) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 9138) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (10-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Asarcornis scutulata whole genome shotgun (WGS) project has the project accession VZSO00000000. This version of the project (01) has the accession number VZSO01000000, and consists of sequences VZSO01000001-VZSO01009138. ##Genome-Assembly-Data-START## Assembly Method :: SuperNova v. 1 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 110x Sequencing Technology :: 10X Genomics linked reads ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..9138 /organism="Asarcornis scutulata" /mol_type="genomic DNA" /isolate="OUT-0051" /specimen_voucher="ECUH:510" /db_xref="taxon:75869" /sex="female" /tissue_type="kidney" /country="USA" /collection_date="17-Feb-2012" WGS VZSO01000001-VZSO01009138 // LOCUS VZSM01000000 15776 rc DNA linear VRT 10-JUL-2020 DEFINITION Loxia curvirostra isolate OUT-0011, whole genome shotgun sequencing project. ACCESSION VZSM00000000 VERSION VZSM00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253984 KEYWORDS WGS. SOURCE Loxia curvirostra ORGANISM Loxia curvirostra Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Fringillidae; Carduelinae; Loxia. REFERENCE 1 (bases 1 to 15776) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 15776) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Loxia curvirostra whole genome shotgun (WGS) project has the project accession VZSM00000000. This version of the project (01) has the accession number VZSM01000000, and consists of sequences VZSM01000001-VZSM01015776. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 92x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..15776 /organism="Loxia curvirostra" /mol_type="genomic DNA" /isolate="OUT-0011" /specimen_voucher="UWYMV:Bird:2860" /db_xref="taxon:64802" /sex="male" /tissue_type="muscle" /country="USA" /lat_lon="42.18 N 114.28 W" /collection_date="Sep-2012" WGS VZSM01000001-VZSM01015776 // LOCUS VZSF01000000 17903 rc DNA linear VRT 10-JUL-2020 DEFINITION Chionis minor isolate B10K-UC-030-51, whole genome shotgun sequencing project. ACCESSION VZSF00000000 VERSION VZSF00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253976 KEYWORDS WGS. SOURCE Chionis minor (black-faced sheathbill) ORGANISM Chionis minor Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Chionididae; Chionis. REFERENCE 1 (bases 1 to 17903) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 17903) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (10-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Chionis minor whole genome shotgun (WGS) project has the project accession VZSF00000000. This version of the project (01) has the accession number VZSF01000000, and consists of sequences VZSF01000001-VZSF01017903. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 50x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..17903 /organism="Chionis minor" /mol_type="genomic DNA" /isolate="B10K-UC-030-51" /db_xref="taxon:227182" /country="South Africa" /lat_lon="46.87 S 37.85 E" WGS VZSF01000001-VZSF01017903 // LOCUS VZSL01000000 123 rc DNA linear VRT 10-JUL-2020 DEFINITION Sylvia atricapilla isolate OUT-0013, whole genome shotgun sequencing project. ACCESSION VZSL00000000 VERSION VZSL00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253985 KEYWORDS WGS. SOURCE Sylvia atricapilla (blackcap) ORGANISM Sylvia atricapilla Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Sylviidae; Sylviinae; Sylvia. REFERENCE 1 (bases 1 to 123) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 123) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Sylvia atricapilla whole genome shotgun (WGS) project has the project accession VZSL00000000. This version of the project (01) has the accession number VZSL01000000, and consists of sequences VZSL01000001-VZSL01000123. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 49184 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 283x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..123 /organism="Sylvia atricapilla" /mol_type="genomic DNA" /isolate="OUT-0013" /db_xref="taxon:48155" /sex="male" /tissue_type="blood" /country="Germany" /lat_lon="48.02 N 7.82 E" WGS VZSL01000001-VZSL01000123 // LOCUS VZSK01000000 2673 rc DNA linear VRT 10-JUL-2020 DEFINITION Erithacus rubecula isolate OUT-0015, whole genome shotgun sequencing project. ACCESSION VZSK00000000 VERSION VZSK00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253986 KEYWORDS WGS. SOURCE Erithacus rubecula (European robin) ORGANISM Erithacus rubecula Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Turdidae; Erithacus. REFERENCE 1 (bases 1 to 2673) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 2673) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Erithacus rubecula whole genome shotgun (WGS) project has the project accession VZSK00000000. This version of the project (01) has the accession number VZSK01000000, and consists of sequences VZSK01000001-VZSK01002673. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 49184 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 159x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..2673 /organism="Erithacus rubecula" /mol_type="genomic DNA" /isolate="OUT-0015" /db_xref="taxon:37610" /sex="male" /tissue_type="blood" /country="Germany" /lat_lon="53.15 N 8.16 E" WGS VZSK01000001-VZSK01002673 // LOCUS VZSJ01000000 44782 rc DNA linear VRT 10-JUL-2020 DEFINITION Pheucticus melanocephalus isolate OUT-0018, whole genome shotgun sequencing project. ACCESSION VZSJ00000000 VERSION VZSJ00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253988 KEYWORDS WGS. SOURCE Pheucticus melanocephalus ORGANISM Pheucticus melanocephalus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Fringillidae; Emberizinae; Cardinalini; Pheucticus. REFERENCE 1 (bases 1 to 44782) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 44782) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Pheucticus melanocephalus whole genome shotgun (WGS) project has the project accession VZSJ00000000. This version of the project (01) has the accession number VZSJ01000000, and consists of sequences VZSJ01000001-VZSJ01044782. ##Genome-Assembly-Data-START## Assembly Method :: SuperNova v. 1.2 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 119x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..44782 /organism="Pheucticus melanocephalus" /mol_type="genomic DNA" /isolate="OUT-0018" /db_xref="taxon:371919" /sex="male" /tissue_type="muscle, pectoral" /country="USA" /lat_lon="46.69 N 121.10 W" /collection_date="05-Jun-2012" WGS VZSJ01000001-VZSJ01044782 // LOCUS VZSI01000000 1701 rc DNA linear VRT 10-JUL-2020 DEFINITION Aphelocoma coerulescens isolate OUT-0022, whole genome shotgun sequencing project. ACCESSION VZSI00000000 VERSION VZSI00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253992 KEYWORDS WGS. SOURCE Aphelocoma coerulescens (scrub jay) ORGANISM Aphelocoma coerulescens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Corvidae; Aphelocoma. REFERENCE 1 (bases 1 to 1701) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 1701) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Aphelocoma coerulescens whole genome shotgun (WGS) project has the project accession VZSI00000000. This version of the project (01) has the accession number VZSI01000000, and consists of sequences VZSI01000001-VZSI01001701. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 49184 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 221x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1701 /organism="Aphelocoma coerulescens" /mol_type="genomic DNA" /isolate="OUT-0022" /specimen_voucher="CUMV:Bird:1713-13619" /db_xref="taxon:39617" /sex="male" /tissue_type="blood" /country="USA" /lat_lon="27.18 N 81.35 W" WGS VZSI01000001-VZSI01001701 // LOCUS VZSH01000000 4116 rc DNA linear VRT 10-JUL-2020 DEFINITION Nothoprocta ornata isolate B10K-MSB-03, whole genome shotgun sequencing project. ACCESSION VZSH00000000 VERSION VZSH00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253974 KEYWORDS WGS. SOURCE Nothoprocta ornata ORGANISM Nothoprocta ornata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Tinamiformes; Tinamidae; Nothoprocta. REFERENCE 1 (bases 1 to 4116) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 4116) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Nothoprocta ornata whole genome shotgun (WGS) project has the project accession VZSH00000000. This version of the project (01) has the accession number VZSH01000000, and consists of sequences VZSH01000001-VZSH01004116. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 85x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..4116 /organism="Nothoprocta ornata" /mol_type="genomic DNA" /isolate="B10K-MSB-03" /db_xref="taxon:83376" /sex="female" /country="Peru" WGS VZSH01000001-VZSH01004116 // LOCUS VZSG01000000 5076 rc DNA linear VRT 10-JUL-2020 DEFINITION Nothoprocta pentlandii isolate B10K-MSB-04, whole genome shotgun sequencing project. ACCESSION VZSG00000000 VERSION VZSG00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253975 KEYWORDS WGS. SOURCE Nothoprocta pentlandii ORGANISM Nothoprocta pentlandii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Tinamiformes; Tinamidae; Nothoprocta. REFERENCE 1 (bases 1 to 5076) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 5076) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Nothoprocta pentlandii whole genome shotgun (WGS) project has the project accession VZSG00000000. This version of the project (01) has the accession number VZSG01000000, and consists of sequences VZSG01000001-VZSG01005076. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 94x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..5076 /organism="Nothoprocta pentlandii" /mol_type="genomic DNA" /isolate="B10K-MSB-04" /db_xref="taxon:2585814" /sex="female" /country="Peru" WGS VZSG01000001-VZSG01005076 // LOCUS VZSE01000000 27395 rc DNA linear VRT 10-JUL-2020 DEFINITION Promerops cafer isolate B10K-UC-030-53, whole genome shotgun sequencing project. ACCESSION VZSE00000000 VERSION VZSE00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253977 KEYWORDS WGS. SOURCE Promerops cafer (Cape sugarbird) ORGANISM Promerops cafer Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Nectariniidae; Promerops. REFERENCE 1 (bases 1 to 27395) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 27395) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (10-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Promerops cafer whole genome shotgun (WGS) project has the project accession VZSE00000000. This version of the project (01) has the accession number VZSE01000000, and consists of sequences VZSE01000001-VZSE01027395. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 55x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..27395 /organism="Promerops cafer" /mol_type="genomic DNA" /isolate="B10K-UC-030-53" /db_xref="taxon:254652" WGS VZSE01000001-VZSE01027395 // LOCUS VZSC01000000 47435 rc DNA linear VRT 10-JUL-2020 DEFINITION Steatornis caripensis isolate OUT-0004, whole genome shotgun sequencing project. ACCESSION VZSC00000000 VERSION VZSC00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253980 KEYWORDS WGS. SOURCE Steatornis caripensis (oilbird) ORGANISM Steatornis caripensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Caprimulgimorphae; Caprimulgiformes; Steatornithidae; Steatornis. REFERENCE 1 (bases 1 to 47435) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 47435) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (10-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Steatornis caripensis whole genome shotgun (WGS) project has the project accession VZSC00000000. This version of the project (01) has the accession number VZSC01000000, and consists of sequences VZSC01000001-VZSC01047435. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 57x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..47435 /organism="Steatornis caripensis" /mol_type="genomic DNA" /isolate="OUT-0004" /specimen_voucher="MPEG:T17221" /db_xref="taxon:48435" /sex="female" /country="Guyana" WGS VZSC01000001-VZSC01047435 // LOCUS VZSD01000000 39768 rc DNA linear VRT 10-JUL-2020 DEFINITION Alca torda isolate OUT-0003, whole genome shotgun sequencing project. ACCESSION VZSD00000000 VERSION VZSD00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253979 KEYWORDS WGS. SOURCE Alca torda (razorbill) ORGANISM Alca torda Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Alcidae; Alca. REFERENCE 1 (bases 1 to 39768) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 39768) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Alca torda whole genome shotgun (WGS) project has the project accession VZSD00000000. This version of the project (01) has the accession number VZSD01000000, and consists of sequences VZSD01000001-VZSD01039768. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 47x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..39768 /organism="Alca torda" /mol_type="genomic DNA" /isolate="OUT-0003" /specimen_voucher="C:Vinge78" /db_xref="taxon:28689" /tissue_type="muscle" /country="Denmark" /lat_lon="54.91 N 10.53 E" /collection_date="11-Jul-2006" WGS VZSD01000001-VZSD01039768 // LOCUS VZSB01000000 3685 rc DNA linear VRT 10-JUL-2020 DEFINITION Caloenas nicobarica isolate OUT-0007, whole genome shotgun sequencing project. ACCESSION VZSB00000000 VERSION VZSB00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253981 KEYWORDS WGS. SOURCE Caloenas nicobarica (Nicobar pigeon) ORGANISM Caloenas nicobarica Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Columbiformes; Columbidae; Caloenas. REFERENCE 1 (bases 1 to 3685) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 3685) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Caloenas nicobarica whole genome shotgun (WGS) project has the project accession VZSB00000000. This version of the project (01) has the accession number VZSB01000000, and consists of sequences VZSB01000001-VZSB01003685. ##Genome-Assembly-Data-START## Assembly Method :: Meraculous; Hi-Rise v. NA Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 52x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..3685 /organism="Caloenas nicobarica" /mol_type="genomic DNA" /isolate="OUT-0007" /db_xref="taxon:187106" /sex="female" /tissue_type="blood" WGS VZSB01000001-VZSB01003685 // LOCUS VZRX01000000 38987 rc DNA linear VRT 10-JUL-2020 DEFINITION Notiomystis cincta isolate B10K-DU-029-75, whole genome shotgun sequencing project. ACCESSION VZRX00000000 VERSION VZRX00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253957 KEYWORDS WGS. SOURCE Notiomystis cincta ORGANISM Notiomystis cincta Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Meliphagoidea; Meliphagidae; Notiomystis. REFERENCE 1 (bases 1 to 38987) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 38987) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Notiomystis cincta whole genome shotgun (WGS) project has the project accession VZRX00000000. This version of the project (01) has the accession number VZRX01000000, and consists of sequences VZRX01000001-VZRX01038987. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 43x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..38987 /organism="Notiomystis cincta" /mol_type="genomic DNA" /isolate="B10K-DU-029-75" /db_xref="taxon:366454" /country="New Zealand" /lat_lon="41.00 S 174.00 E" WGS VZRX01000001-VZRX01038987 // LOCUS VZRW01000000 25868 rc DNA linear VRT 10-JUL-2020 DEFINITION Aegotheles bennettii isolate B10K-DU-029-76, whole genome shotgun sequencing project. ACCESSION VZRW00000000 VERSION VZRW00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253958 KEYWORDS WGS. SOURCE Aegotheles bennettii ORGANISM Aegotheles bennettii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Caprimulgimorphae; Caprimulgiformes; Aegothelidae; Aegotheles. REFERENCE 1 (bases 1 to 25868) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 25868) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Aegotheles bennettii whole genome shotgun (WGS) project has the project accession VZRW00000000. This version of the project (01) has the accession number VZRW01000000, and consists of sequences VZRW01000001-VZRW01025868. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 45x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..25868 /organism="Aegotheles bennettii" /mol_type="genomic DNA" /isolate="B10K-DU-029-76" /db_xref="taxon:48278" /sex="female" /tissue_type="heart, liver or muscle" /country="Papua New Guinea" /lat_lon="9.05 S 147.00 E" /collection_date="25-Aug-1987" WGS VZRW01000001-VZRW01025868 // LOCUS VZRZ01000000 15302 rc DNA linear VRT 10-JUL-2020 DEFINITION Climacteris rufus isolate B10K-DU-029-53, whole genome shotgun sequencing project. ACCESSION VZRZ00000000 VERSION VZRZ00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253953 KEYWORDS WGS. SOURCE Climacteris rufus (rufous treecreeper) ORGANISM Climacteris rufus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Climacteridae; Climacteris. REFERENCE 1 (bases 1 to 15302) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 15302) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Climacteris rufus whole genome shotgun (WGS) project has the project accession VZRZ00000000. This version of the project (01) has the accession number VZRZ01000000, and consists of sequences VZRZ01000001-VZRZ01015302. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 45x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..15302 /organism="Climacteris rufus" /mol_type="genomic DNA" /isolate="B10K-DU-029-53" /specimen_voucher="MVMA:354" /db_xref="taxon:47695" /sex="male" /country="Australia" /lat_lon="32.00 S 122.08 E" /collection_date="20-Nov-1989" WGS VZRZ01000001-VZRZ01015302 // LOCUS VZRY01000000 13191 rc DNA linear VRT 10-JUL-2020 DEFINITION Rhynochetos jubatus isolate B10K-DU-029-58, whole genome shotgun sequencing project. ACCESSION VZRY00000000 VERSION VZRY00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253954 KEYWORDS WGS. SOURCE Rhynochetos jubatus (kagu) ORGANISM Rhynochetos jubatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Rhynochetidae; Rhynochetos. REFERENCE 1 (bases 1 to 13191) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 13191) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Rhynochetos jubatus whole genome shotgun (WGS) project has the project accession VZRY00000000. This version of the project (01) has the accession number VZRY01000000, and consists of sequences VZRY01000001-VZRY01013191. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 49x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..13191 /organism="Rhynochetos jubatus" /mol_type="genomic DNA" /isolate="B10K-DU-029-58" /db_xref="taxon:54386" /sex="female" /tissue_type="muscle" WGS VZRY01000001-VZRY01013191 // LOCUS VZRU01000000 39814 rc DNA linear VRT 10-JUL-2020 DEFINITION Pedionomus torquatus isolate B10K-DU-029-80, whole genome shotgun sequencing project. ACCESSION VZRU00000000 VERSION VZRU00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253960 KEYWORDS WGS. SOURCE Pedionomus torquatus (plains-wanderer) ORGANISM Pedionomus torquatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Pedionomidae; Pedionomus. REFERENCE 1 (bases 1 to 39814) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 39814) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Pedionomus torquatus whole genome shotgun (WGS) project has the project accession VZRU00000000. This version of the project (01) has the accession number VZRU01000000, and consists of sequences VZRU01000001-VZRU01039814. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 41x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..39814 /organism="Pedionomus torquatus" /mol_type="genomic DNA" /isolate="B10K-DU-029-80" /specimen_voucher="MVMA:2319" /db_xref="taxon:227192" /sex="female" /tissue_type="muscle" /country="Australia" /lat_lon="37.88 S 143.58 E" /collection_date="01-Sep-1997" WGS VZRU01000001-VZRU01039814 // LOCUS VZRS01000000 26084 rc DNA linear VRT 10-JUL-2020 DEFINITION Ifrita kowaldi isolate B10K-DU-029-41, whole genome shotgun sequencing project. ACCESSION VZRS00000000 VERSION VZRS00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253943 KEYWORDS WGS. SOURCE Ifrita kowaldi (blue-capped ifrita) ORGANISM Ifrita kowaldi Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Cinclosomatidae; Ifrita. REFERENCE 1 (bases 1 to 26084) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 26084) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Ifrita kowaldi whole genome shotgun (WGS) project has the project accession VZRS00000000. This version of the project (01) has the accession number VZRS01000000, and consists of sequences VZRS01000001-VZRS01026084. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 51x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..26084 /organism="Ifrita kowaldi" /mol_type="genomic DNA" /isolate="B10K-DU-029-41" /db_xref="taxon:461245" /sex="male" /tissue_type="liver" /country="Papua New Guinea" /lat_lon="9.12 S 148.22 E" /collection_date="04-Aug-1987" WGS VZRS01000001-VZRS01026084 // LOCUS VZRT01000000 25824 rc DNA linear VRT 10-JUL-2020 DEFINITION Panurus biarmicus isolate B10K-DU-030-18, whole genome shotgun sequencing project. ACCESSION VZRT00000000 VERSION VZRT00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253962 KEYWORDS WGS. SOURCE Panurus biarmicus ORGANISM Panurus biarmicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Sylviidae; Panurus. REFERENCE 1 (bases 1 to 25824) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 25824) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Panurus biarmicus whole genome shotgun (WGS) project has the project accession VZRT00000000. This version of the project (01) has the accession number VZRT01000000, and consists of sequences VZRT01000001-VZRT01025824. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 109x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..25824 /organism="Panurus biarmicus" /mol_type="genomic DNA" /isolate="B10K-DU-030-18" /specimen_voucher="UWBM:59726" /db_xref="taxon:181101" /sex="female" /country="Mongolia" /lat_lon="47.37 N 118.48 E" /collection_date="30-May-1998" WGS VZRT01000001-VZRT01025824 // LOCUS VZRV01000000 23443 rc DNA linear VRT 10-JUL-2020 DEFINITION Falcunculus frontatus isolate B10K-DU-029-77, whole genome shotgun sequencing project. ACCESSION VZRV00000000 VERSION VZRV00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253959 KEYWORDS WGS. SOURCE Falcunculus frontatus (Eastern shriketit) ORGANISM Falcunculus frontatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Pachycephalidae; Falcunculus. REFERENCE 1 (bases 1 to 23443) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 23443) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Falcunculus frontatus whole genome shotgun (WGS) project has the project accession VZRV00000000. This version of the project (01) has the accession number VZRV01000000, and consists of sequences VZRV01000001-VZRV01023443. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 67x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..23443 /organism="Falcunculus frontatus" /mol_type="genomic DNA" /isolate="B10K-DU-029-77" /specimen_voucher="MVMA:020" /db_xref="taxon:254539" /sex="male" /country="Australia" /lat_lon="38.67 S 143.49 E" /collection_date="23-Oct-1992" WGS VZRV01000001-VZRV01023443 // LOCUS VZRR01000000 27748 rc DNA linear VRT 10-JUL-2020 DEFINITION Oreocharis arfaki isolate B10K-DU-029-42, whole genome shotgun sequencing project. ACCESSION VZRR00000000 VERSION VZRR00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253944 KEYWORDS WGS. SOURCE Oreocharis arfaki (tit berrypecker) ORGANISM Oreocharis arfaki Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Paramythiidae; Oreocharis. REFERENCE 1 (bases 1 to 27748) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 27748) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Oreocharis arfaki whole genome shotgun (WGS) project has the project accession VZRR00000000. This version of the project (01) has the accession number VZRR01000000, and consists of sequences VZRR01000001-VZRR01027748. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 45x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..27748 /organism="Oreocharis arfaki" /mol_type="genomic DNA" /isolate="B10K-DU-029-42" /db_xref="taxon:979223" /sex="male" /tissue_type="muscle" /country="Papua New Guinea" /lat_lon="9.12 S 148.22 E" /collection_date="04-Aug-1987" WGS VZRR01000001-VZRR01027748 // LOCUS VZRP01000000 37339 rc DNA linear VRT 10-JUL-2020 DEFINITION Malurus elegans isolate B10K-DU-029-44, whole genome shotgun sequencing project. ACCESSION VZRP00000000 VERSION VZRP00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253946 KEYWORDS WGS. SOURCE Malurus elegans (Red-winged fairywren) ORGANISM Malurus elegans Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Meliphagoidea; Maluridae; Malurus. REFERENCE 1 (bases 1 to 37339) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 37339) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Malurus elegans whole genome shotgun (WGS) project has the project accession VZRP00000000. This version of the project (01) has the accession number VZRP01000000, and consists of sequences VZRP01000001-VZRP01037339. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 52x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..37339 /organism="Malurus elegans" /mol_type="genomic DNA" /isolate="B10K-DU-029-44" /specimen_voucher="MVMA:0215" /db_xref="taxon:720584" /sex="female" /tissue_type="heart" /country="Australia" /lat_lon="34.79 S 117.44 E" /collection_date="05-Nov-1989" WGS VZRP01000001-VZRP01037339 // LOCUS VZRQ01000000 18919 rc DNA linear VRT 10-JUL-2020 DEFINITION Machaerirhynchus nigripectus isolate B10K-DU-029-43, whole genome shotgun sequencing project. ACCESSION VZRQ00000000 VERSION VZRQ00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253945 KEYWORDS WGS. SOURCE Machaerirhynchus nigripectus ORGANISM Machaerirhynchus nigripectus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Dicruridae; Machaerirhynchus. REFERENCE 1 (bases 1 to 18919) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 18919) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Machaerirhynchus nigripectus whole genome shotgun (WGS) project has the project accession VZRQ00000000. This version of the project (01) has the accession number VZRQ01000000, and consists of sequences VZRQ01000001-VZRQ01018919. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 44x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..18919 /organism="Machaerirhynchus nigripectus" /mol_type="genomic DNA" /isolate="B10K-DU-029-43" /db_xref="taxon:1160894" /sex="female" /tissue_type="heart" /country="Papua New Guinea" /lat_lon="9.12 S 148.22 E" /collection_date="07-Aug-1987" WGS VZRQ01000001-VZRQ01018919 // LOCUS VZRO01000000 18800 rc DNA linear VRT 10-JUL-2020 DEFINITION Daphoenositta chrysoptera isolate B10K-DU-029-47, whole genome shotgun sequencing project. ACCESSION VZRO00000000 VERSION VZRO00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253948 KEYWORDS WGS. SOURCE Daphoenositta chrysoptera (varied sittella) ORGANISM Daphoenositta chrysoptera Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Pachycephalidae; Daphoenositta. REFERENCE 1 (bases 1 to 18800) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 18800) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Daphoenositta chrysoptera whole genome shotgun (WGS) project has the project accession VZRO00000000. This version of the project (01) has the accession number VZRO01000000, and consists of sequences VZRO01000001-VZRO01018800. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 54x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..18800 /organism="Daphoenositta chrysoptera" /mol_type="genomic DNA" /isolate="B10K-DU-029-47" /specimen_voucher="MVMA:1309" /db_xref="taxon:254528" /sex="male" /tissue_type="heart" /country="Australia" /lat_lon="17.28 S 136.22 E" /collection_date="04-Sep-1992" WGS VZRO01000001-VZRO01018800 // LOCUS VZRI01000000 28829 rc DNA linear VRT 10-JUL-2020 DEFINITION Upupa epops isolate B10K-DU-012-37, whole genome shotgun sequencing project. ACCESSION VZRI00000000 VERSION VZRI00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253908 KEYWORDS WGS. SOURCE Upupa epops (Eurasian hoopoe) ORGANISM Upupa epops Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Upupiformes; Upupidae; Upupa. REFERENCE 1 (bases 1 to 28829) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 28829) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Upupa epops whole genome shotgun (WGS) project has the project accession VZRI00000000. This version of the project (01) has the accession number VZRI01000000, and consists of sequences VZRI01000001-VZRI01028829. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 49x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..28829 /organism="Upupa epops" /mol_type="genomic DNA" /isolate="B10K-DU-012-37" /specimen_voucher="IZCAS:18810" /db_xref="taxon:57439" /sex="male" /country="China" /lat_lon="39.13 N 117.2 E" /collection_date="Dec-2013" WGS VZRI01000001-VZRI01028829 // LOCUS VZRN01000000 11464 rc DNA linear VRT 10-JUL-2020 DEFINITION Dasyornis broadbenti isolate B10K-DU-029-49, whole genome shotgun sequencing project. ACCESSION VZRN00000000 VERSION VZRN00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253949 KEYWORDS WGS. SOURCE Dasyornis broadbenti (rufous bristle-bird) ORGANISM Dasyornis broadbenti Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Meliphagoidea; Dasyornithidae; Dasyornis. REFERENCE 1 (bases 1 to 11464) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 11464) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Dasyornis broadbenti whole genome shotgun (WGS) project has the project accession VZRN00000000. This version of the project (01) has the accession number VZRN01000000, and consists of sequences VZRN01000001-VZRN01011464. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 44x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..11464 /organism="Dasyornis broadbenti" /mol_type="genomic DNA" /isolate="B10K-DU-029-49" /specimen_voucher="MVMA:2172" /db_xref="taxon:243059" /tissue_type="liver" /country="Australia" /lat_lon="38.78 S 144.02 E" /collection_date="20-Jan-1996" WGS VZRN01000001-VZRN01011464 // LOCUS VZRM01000000 15742 rc DNA linear VRT 10-JUL-2020 DEFINITION Grantiella picta isolate B10K-DU-029-50, whole genome shotgun sequencing project. ACCESSION VZRM00000000 VERSION VZRM00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253950 KEYWORDS WGS. SOURCE Grantiella picta ORGANISM Grantiella picta Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Meliphagoidea; Meliphagidae; Grantiella. REFERENCE 1 (bases 1 to 15742) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 15742) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Grantiella picta whole genome shotgun (WGS) project has the project accession VZRM00000000. This version of the project (01) has the accession number VZRM01000000, and consists of sequences VZRM01000001-VZRM01015742. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 49x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..15742 /organism="Grantiella picta" /mol_type="genomic DNA" /isolate="B10K-DU-029-50" /specimen_voucher="MVMA:2672" /db_xref="taxon:266360" /sex="male" /tissue_type="heart" /country="Australia" /lat_lon="36.37 S 146.28 E" /collection_date="27-Nov-1996" WGS VZRM01000001-VZRM01015742 // LOCUS VZRL01000000 12172 rc DNA linear VRT 10-JUL-2020 DEFINITION Origma solitaria isolate B10K-DU-029-52, whole genome shotgun sequencing project. ACCESSION VZRL00000000 VERSION VZRL00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253952 KEYWORDS WGS. SOURCE Origma solitaria ORGANISM Origma solitaria Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Meliphagoidea; Acanthizidae; Origma. REFERENCE 1 (bases 1 to 12172) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 12172) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Origma solitaria whole genome shotgun (WGS) project has the project accession VZRL00000000. This version of the project (01) has the accession number VZRL01000000, and consists of sequences VZRL01000001-VZRL01012172. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 47x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..12172 /organism="Origma solitaria" /mol_type="genomic DNA" /isolate="B10K-DU-029-52" /specimen_voucher="MVMA:3525" /db_xref="taxon:720586" /sex="male" /country="Australia" /lat_lon="33.05 S 150.28 E" /collection_date="08-Dec-2001" WGS VZRL01000001-VZRL01012172 // LOCUS VZRF01000000 28485 rc DNA linear VRT 10-JUL-2020 DEFINITION Vireo altiloquus isolate B10K-DU-001-22, whole genome shotgun sequencing project. ACCESSION VZRF00000000 VERSION VZRF00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253780 KEYWORDS WGS. SOURCE Vireo altiloquus (black-whiskered vireo) ORGANISM Vireo altiloquus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Vireonidae; Vireoninae; Vireo. REFERENCE 1 (bases 1 to 28485) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 28485) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (19-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Vireo altiloquus whole genome shotgun (WGS) project has the project accession VZRF00000000. This version of the project (01) has the accession number VZRF01000000, and consists of sequences VZRF01000001-VZRF01028485. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 47x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..28485 /organism="Vireo altiloquus" /mol_type="genomic DNA" /isolate="B10K-DU-001-22" /specimen_voucher="USNM:607205" /db_xref="taxon:34956" /sex="female" /tissue_type="muscle" /country="Saint Vincent and the Grenadines" /lat_lon="13.19 N 61.21 W" /collection_date="31-Jul-1989" WGS VZRF01000001-VZRF01028485 // LOCUS VZRH01000000 14905 rc DNA linear VRT 10-JUL-2020 DEFINITION Urocynchramus pylzowi isolate B10K-DU-012-38, whole genome shotgun sequencing project. ACCESSION VZRH00000000 VERSION VZRH00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253909 KEYWORDS WGS. SOURCE Urocynchramus pylzowi ORGANISM Urocynchramus pylzowi Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Fringillidae; Urocynchramus. REFERENCE 1 (bases 1 to 14905) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 14905) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Urocynchramus pylzowi whole genome shotgun (WGS) project has the project accession VZRH00000000. This version of the project (01) has the accession number VZRH01000000, and consists of sequences VZRH01000001-VZRH01014905. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 59x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..14905 /organism="Urocynchramus pylzowi" /mol_type="genomic DNA" /isolate="B10K-DU-012-38" /specimen_voucher="IZCAS:653" /db_xref="taxon:571890" /sex="female" /tissue_type="muscle" /country="China" /lat_lon="38.02 N 101.32 E" /collection_date="08-Mar-2002" WGS VZRH01000001-VZRH01014905 // LOCUS VZRG01000000 11369 rc DNA linear VRT 10-JUL-2020 DEFINITION Erythrocercus mccallii isolate B10K-DU-002-60, whole genome shotgun sequencing project. ACCESSION VZRG00000000 VERSION VZRG00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253870 KEYWORDS WGS. SOURCE Erythrocercus mccallii ORGANISM Erythrocercus mccallii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Dicruridae; Erythrocercus. REFERENCE 1 (bases 1 to 11369) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 11369) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Erythrocercus mccallii whole genome shotgun (WGS) project has the project accession VZRG00000000. This version of the project (01) has the accession number VZRG01000000, and consists of sequences VZRG01000001-VZRG01011369. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 122x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..11369 /organism="Erythrocercus mccallii" /mol_type="genomic DNA" /isolate="B10K-DU-002-60" /specimen_voucher="LSUMZ:Ornithology:B45295" /db_xref="taxon:107208" /sex="male" /tissue_type="muscle" /country="Ghana" /lat_lon="6.62 N 2.66 W" /collection_date="25-Mar-2003" WGS VZRG01000001-VZRG01011369 // LOCUS VZRE01000000 26262 rc DNA linear VRT 10-JUL-2020 DEFINITION Cephalopterus ornatus isolate B10K-DU-001-01, whole genome shotgun sequencing project. ACCESSION VZRE00000000 VERSION VZRE00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253765 KEYWORDS WGS. SOURCE Cephalopterus ornatus (amazonian umbrellabird) ORGANISM Cephalopterus ornatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Cotingidae; Cephalopterus. REFERENCE 1 (bases 1 to 26262) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 26262) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (19-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Cephalopterus ornatus whole genome shotgun (WGS) project has the project accession VZRE00000000. This version of the project (01) has the accession number VZRE01000000, and consists of sequences VZRE01000001-VZRE01026262. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 42x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..26262 /organism="Cephalopterus ornatus" /mol_type="genomic DNA" /isolate="B10K-DU-001-01" /specimen_voucher="USNM:541336" /db_xref="taxon:114276" /sex="female" /tissue_type="muscle" /country="Brazil" /lat_lon="3.65 S 52.37 W" /collection_date="14-Aug-1986" WGS VZRE01000001-VZRE01026262 // LOCUS VYZM01000000 37562 rc DNA linear VRT 10-JUL-2020 DEFINITION Dromas ardeola isolate B10K-DU-012-55, whole genome shotgun sequencing project. ACCESSION VYZM00000000 VERSION VYZM00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253915 KEYWORDS WGS. SOURCE Dromas ardeola ORGANISM Dromas ardeola Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Dromadidae; Dromas. REFERENCE 1 (bases 1 to 37562) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 37562) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Dromas ardeola whole genome shotgun (WGS) project has the project accession VYZM00000000. This version of the project (01) has the accession number VYZM01000000, and consists of sequences VYZM01000001-VYZM01037562. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 44x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..37562 /organism="Dromas ardeola" /mol_type="genomic DNA" /isolate="B10K-DU-012-55" /specimen_voucher="USNM:647762" /db_xref="taxon:458190" /tissue_type="muscle" /country="Djibouti" /lat_lon="11.54 N 43.15 E" /collection_date="02-May-2014" WGS VYZM01000001-VYZM01037562 // LOCUS VZRD01000000 3838 rc DNA linear VRT 10-JUL-2020 DEFINITION Tachuris rubrigastra isolate B10K-CU-031-13, whole genome shotgun sequencing project. ACCESSION VZRD00000000 VERSION VZRD00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253756 KEYWORDS WGS. SOURCE Tachuris rubrigastra ORGANISM Tachuris rubrigastra Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Tyrannidae; Tachuris. REFERENCE 1 (bases 1 to 3838) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 3838) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (19-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Tachuris rubrigastra whole genome shotgun (WGS) project has the project accession VZRD00000000. This version of the project (01) has the accession number VZRD01000000, and consists of sequences VZRD01000001-VZRD01003838. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 57x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..3838 /organism="Tachuris rubrigastra" /mol_type="genomic DNA" /isolate="B10K-CU-031-13" /specimen_voucher="LSUMZ:Ornithology:B48222" /db_xref="taxon:495162" /sex="female" /tissue_type="muscle" /country="Peru" /lat_lon="12.55 S 76.72 W" /collection_date="01-Aug-2004" WGS VZRD01000001-VZRD01003838 // LOCUS VYZK01000000 5623 rc DNA linear VRT 10-JUL-2020 DEFINITION Prunella himalayana isolate B10K-DU-013-18, whole genome shotgun sequencing project. ACCESSION VYZK00000000 VERSION VYZK00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253920 KEYWORDS WGS. SOURCE Prunella himalayana ORGANISM Prunella himalayana Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Passeridae; Prunella. REFERENCE 1 (bases 1 to 5623) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 5623) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Prunella himalayana whole genome shotgun (WGS) project has the project accession VYZK00000000. This version of the project (01) has the accession number VYZK01000000, and consists of sequences VYZK01000001-VYZK01005623. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 74x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..5623 /organism="Prunella himalayana" /mol_type="genomic DNA" /isolate="B10K-DU-013-18" /specimen_voucher="USNM:616447" /db_xref="taxon:670356" /sex="male" /tissue_type="muscle" /country="Mongolia" /lat_lon="47.53 N 98.53 E" /collection_date="09-Jun-1997" WGS VYZK01000001-VYZK01005623 // LOCUS VYZF01000000 11603 rc DNA linear VRT 10-JUL-2020 DEFINITION Chroicocephalus maculipennis isolate B10K-DU-021-33, whole genome shotgun sequencing project. ACCESSION VYZF00000000 VERSION VYZF00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253928 KEYWORDS WGS. SOURCE Chroicocephalus maculipennis (brown-hooded gull) ORGANISM Chroicocephalus maculipennis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Laridae; Chroicocephalus. REFERENCE 1 (bases 1 to 11603) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 11603) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Chroicocephalus maculipennis whole genome shotgun (WGS) project has the project accession VYZF00000000. This version of the project (01) has the accession number VYZF01000000, and consists of sequences VYZF01000001-VYZF01011603. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 52x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..11603 /organism="Chroicocephalus maculipennis" /mol_type="genomic DNA" /isolate="B10K-DU-021-33" /specimen_voucher="USNM:630390" /db_xref="taxon:287016" /sex="female" /tissue_type="mixed tissue sample" /country="Uruguay" /lat_lon="32.28 S 55.45 W" /collection_date="29-Aug-2002" WGS VYZF01000001-VYZF01011603 // LOCUS VYZE01000000 6906 rc DNA linear VRT 10-JUL-2020 DEFINITION Pterocles burchelli isolate B10K-DU-027-49, whole genome shotgun sequencing project. ACCESSION VYZE00000000 VERSION VYZE00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253932 KEYWORDS WGS. SOURCE Pterocles burchelli ORGANISM Pterocles burchelli Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Ciconiiformes; Pteroclidae; Pterocles. REFERENCE 1 (bases 1 to 6906) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 6906) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Pterocles burchelli whole genome shotgun (WGS) project has the project accession VYZE00000000. This version of the project (01) has the accession number VYZE01000000, and consists of sequences VYZE01000001-VYZE01006906. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 74x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..6906 /organism="Pterocles burchelli" /mol_type="genomic DNA" /isolate="B10K-DU-027-49" /specimen_voucher="USNM:642190" /db_xref="taxon:2585816" /tissue_type="muscle" /country="Namibia" /lat_lon="23.85 S 19.56 E" /collection_date="09-Aug-2009" WGS VYZE01000001-VYZE01006906 // LOCUS VYXG01000000 18148 rc DNA linear VRT 10-JUL-2020 DEFINITION Lanius ludovicianus isolate B10K-DU-001-65, whole genome shotgun sequencing project. ACCESSION VYXG00000000 VERSION VYXG00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253815 KEYWORDS WGS. SOURCE Lanius ludovicianus ORGANISM Lanius ludovicianus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Laniidae; Lanius. REFERENCE 1 (bases 1 to 18148) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 18148) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (12-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Lanius ludovicianus whole genome shotgun (WGS) project has the project accession VYXG00000000. This version of the project (01) has the accession number VYXG01000000, and consists of sequences VYXG01000001-VYXG01018148. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 45x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..18148 /organism="Lanius ludovicianus" /mol_type="genomic DNA" /isolate="B10K-DU-001-65" /specimen_voucher="USNM:626352" /db_xref="taxon:28713" /sex="female" /tissue_type="muscle" /country="USA" /lat_lon="25.48 N 80.38 W" /collection_date="15-Apr-2001" WGS VYXG01000001-VYXG01018148 // LOCUS VYXD01000000 30799 rc DNA linear VRT 10-JUL-2020 DEFINITION Hylia prasina isolate B10K-DU-001-70, whole genome shotgun sequencing project. ACCESSION VYXD00000000 VERSION VYXD00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253820 KEYWORDS WGS. SOURCE Hylia prasina (green hylia) ORGANISM Hylia prasina Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Sylviidae; Acrocephalinae; Hylia. REFERENCE 1 (bases 1 to 30799) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 30799) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (12-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Hylia prasina whole genome shotgun (WGS) project has the project accession VYXD00000000. This version of the project (01) has the accession number VYXD01000000, and consists of sequences VYXD01000001-VYXD01030799. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 48x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..30799 /organism="Hylia prasina" /mol_type="genomic DNA" /isolate="B10K-DU-001-70" /specimen_voucher="USNM:627009" /db_xref="taxon:208073" /sex="female" /tissue_type="muscle" /country="Gabon" /lat_lon="1.94 S 9.88 E" /collection_date="04-Mar-2002" WGS VYXD01000001-VYXD01030799 // LOCUS VZRJ01000000 21059 rc DNA linear VRT 10-JUL-2020 DEFINITION Ptilonorhynchus violaceus isolate B10K-DU-012-10, whole genome shotgun sequencing project. ACCESSION VZRJ00000000 VERSION VZRJ00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253905 KEYWORDS WGS. SOURCE Ptilonorhynchus violaceus (satin bowerbird) ORGANISM Ptilonorhynchus violaceus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Ptilonorhynchidae; Ptilonorhynchus. REFERENCE 1 (bases 1 to 21059) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 21059) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Ptilonorhynchus violaceus whole genome shotgun (WGS) project has the project accession VZRJ00000000. This version of the project (01) has the accession number VZRJ01000000, and consists of sequences VZRJ01000001-VZRJ01021059. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 46x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..21059 /organism="Ptilonorhynchus violaceus" /mol_type="genomic DNA" /isolate="B10K-DU-012-10" /specimen_voucher="UMD:RWG" /db_xref="taxon:28724" /sex="female" /tissue_type="blood" WGS VZRJ01000001-VZRJ01021059 // LOCUS VZRK01000000 3396 rc DNA linear VRT 10-JUL-2020 DEFINITION Onychorhynchus coronatus isolate B10K-DU-028-75, whole genome shotgun sequencing project. ACCESSION VZRK00000000 VERSION VZRK00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253933 KEYWORDS WGS. SOURCE Onychorhynchus coronatus ORGANISM Onychorhynchus coronatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Tyrannidae; Onychorhynchus. REFERENCE 1 (bases 1 to 3396) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 3396) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Onychorhynchus coronatus whole genome shotgun (WGS) project has the project accession VZRK00000000. This version of the project (01) has the accession number VZRK01000000, and consists of sequences VZRK01000001-VZRK01003396. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 71x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..3396 /organism="Onychorhynchus coronatus" /mol_type="genomic DNA" /isolate="B10K-DU-028-75" /specimen_voucher="USNM:614072" /db_xref="taxon:360224" /sex="female" /tissue_type="mixed tissue sample" /country="Panama" /lat_lon="9.36 N 82.52 W" /collection_date="26-Feb-1991" WGS VZRK01000001-VZRK01003396 // LOCUS VYZJ01000000 11220 rc DNA linear VRT 10-JUL-2020 DEFINITION Emberiza fucata isolate B10K-DU-015-11, whole genome shotgun sequencing project. ACCESSION VYZJ00000000 VERSION VYZJ00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253922 KEYWORDS WGS. SOURCE Emberiza fucata ORGANISM Emberiza fucata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Fringillidae; Emberizinae; Emberizini; Emberiza. REFERENCE 1 (bases 1 to 11220) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 11220) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Emberiza fucata whole genome shotgun (WGS) project has the project accession VYZJ00000000. This version of the project (01) has the accession number VYZJ01000000, and consists of sequences VYZJ01000001-VYZJ01011220. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 57x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..11220 /organism="Emberiza fucata" /mol_type="genomic DNA" /isolate="B10K-DU-015-11" /specimen_voucher="USNM:641822" /db_xref="taxon:337179" /sex="female" /tissue_type="mixed tissue sample" /country="Japan" /lat_lon="34.14 N 132.23 E" /collection_date="20-Jun-2009" WGS VYZJ01000001-VYZJ01011220 // LOCUS VYZD01000000 7874 rc DNA linear VRT 10-JUL-2020 DEFINITION Furnarius figulus isolate B10K-DU-003-06, whole genome shotgun sequencing project. ACCESSION VYZD00000000 VERSION VYZD00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253878 KEYWORDS WGS. SOURCE Furnarius figulus ORGANISM Furnarius figulus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Furnariidae; Furnarius. REFERENCE 1 (bases 1 to 7874) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 7874) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Furnarius figulus whole genome shotgun (WGS) project has the project accession VYZD00000000. This version of the project (01) has the accession number VYZD01000000, and consists of sequences VYZD01000001-VYZD01007874. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 72x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..7874 /organism="Furnarius figulus" /mol_type="genomic DNA" /isolate="B10K-DU-003-06" /specimen_voucher="USNM:562254" /db_xref="taxon:463165" /sex="male" /country="Brazil" /lat_lon="3.65 S 52.37 W" /collection_date="20-Sep-1986" WGS VYZD01000001-VYZD01007874 // LOCUS VYXE01000000 39279 rc DNA linear VRT 10-JUL-2020 DEFINITION Cardinalis cardinalis isolate B10K-DU-001-69, whole genome shotgun sequencing project. ACCESSION VYXE00000000 VERSION VYXE00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253819 KEYWORDS WGS. SOURCE Cardinalis cardinalis (northern cardinal) ORGANISM Cardinalis cardinalis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Fringillidae; Emberizinae; Cardinalini; Cardinalis. REFERENCE 1 (bases 1 to 39279) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 39279) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (12-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Cardinalis cardinalis whole genome shotgun (WGS) project has the project accession VYXE00000000. This version of the project (01) has the accession number VYXE01000000, and consists of sequences VYXE01000001-VYXE01039279. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 53x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..39279 /organism="Cardinalis cardinalis" /mol_type="genomic DNA" /isolate="B10K-DU-001-69" /specimen_voucher="USNM:626494" /db_xref="taxon:98964" /sex="female" /tissue_type="muscle" /country="USA" /lat_lon="30.64 N 86.55 W" /collection_date="03-May-2001" WGS VYXE01000001-VYXE01039279 // LOCUS VYXF01000000 26442 rc DNA linear VRT 10-JUL-2020 DEFINITION Polioptila caerulea isolate B10K-DU-001-66, whole genome shotgun sequencing project. ACCESSION VYXF00000000 VERSION VYXF00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253816 KEYWORDS WGS. SOURCE Polioptila caerulea ORGANISM Polioptila caerulea Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Certhiidae; Polioptilinae; Polioptila. REFERENCE 1 (bases 1 to 26442) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 26442) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (12-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Polioptila caerulea whole genome shotgun (WGS) project has the project accession VYXF00000000. This version of the project (01) has the accession number VYXF01000000, and consists of sequences VYXF01000001-VYXF01026442. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 52x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..26442 /organism="Polioptila caerulea" /mol_type="genomic DNA" /isolate="B10K-DU-001-66" /specimen_voucher="USNM:626438" /db_xref="taxon:66707" /sex="female" /tissue_type="muscle" /country="USA" /lat_lon="30.07 N 85.55 W" /collection_date="28-Apr-2001" WGS VYXF01000001-VYXF01026442 // LOCUS VYXB01000000 24586 rc DNA linear VRT 10-JUL-2020 DEFINITION Pachyramphus minor isolate B10K-DU-001-72, whole genome shotgun sequencing project. ACCESSION VYXB00000000 VERSION VYXB00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253822 KEYWORDS WGS. SOURCE Pachyramphus minor ORGANISM Pachyramphus minor Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Tyrannidae; Pachyramphus. REFERENCE 1 (bases 1 to 24586) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 24586) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (12-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Pachyramphus minor whole genome shotgun (WGS) project has the project accession VYXB00000000. This version of the project (01) has the accession number VYXB01000000, and consists of sequences VYXB01000001-VYXB01024586. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 40x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..24586 /organism="Pachyramphus minor" /mol_type="genomic DNA" /isolate="B10K-DU-001-72" /specimen_voucher="USNM:627125" /db_xref="taxon:369605" /sex="female" /tissue_type="muscle" /country="Guyana" /lat_lon="6.40 N 58.77 W" /collection_date="04-Dec-2000" WGS VYXB01000001-VYXB01024586 // LOCUS VXBI01000000 24180 rc DNA linear VRT 10-JUL-2020 DEFINITION Toxostoma redivivum isolate B10K-DU-002-15, whole genome shotgun sequencing project. ACCESSION VXBI00000000 VERSION VXBI00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253839 KEYWORDS WGS. SOURCE Toxostoma redivivum ORGANISM Toxostoma redivivum Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Mimidae; Toxostoma. REFERENCE 1 (bases 1 to 24180) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 24180) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Toxostoma redivivum whole genome shotgun (WGS) project has the project accession VXBI00000000. This version of the project (01) has the accession number VXBI01000000, and consists of sequences VXBI01000001-VXBI01024180. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 50x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..24180 /organism="Toxostoma redivivum" /mol_type="genomic DNA" /isolate="B10K-DU-002-15" /specimen_voucher="USNM:636895" /db_xref="taxon:99882" /sex="female" /tissue_type="muscle" /country="USA" /lat_lon="35.85 N 118.09 W" /collection_date="29-Jun-2006" WGS VXBI01000001-VXBI01024180 // LOCUS VXBE01000000 21258 rc DNA linear VRT 10-JUL-2020 DEFINITION Motacilla alba isolate B10K-DU-001-75, whole genome shotgun sequencing project. ACCESSION VXBE00000000 VERSION VXBE00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253824 KEYWORDS WGS. SOURCE Motacilla alba (white wagtail) ORGANISM Motacilla alba Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Motacillidae; Motacilla. REFERENCE 1 (bases 1 to 21258) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 21258) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Motacilla alba whole genome shotgun (WGS) project has the project accession VXBE00000000. This version of the project (01) has the accession number VXBE01000000, and consists of sequences VXBE01000001-VXBE01021258. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 50x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..21258 /organism="Motacilla alba" /mol_type="genomic DNA" /isolate="B10K-DU-001-75" /specimen_voucher="USNM:627656" /db_xref="taxon:45807" /sex="female" /tissue_type="muscle" /country="Iceland" /lat_lon="64.03 N 22.57 W" /collection_date="13-Aug-2001" WGS VXBE01000001-VXBE01021258 // LOCUS VWZN01000000 38895 rc DNA linear VRT 10-JUL-2020 DEFINITION Regulus satrapa isolate B10K-DU-001-18, whole genome shotgun sequencing project. ACCESSION VWZN00000000 VERSION VWZN00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253776 KEYWORDS WGS. SOURCE Regulus satrapa (golden-crowned kinglet) ORGANISM Regulus satrapa Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Sylviidae; Regulus. REFERENCE 1 (bases 1 to 38895) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 38895) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Regulus satrapa whole genome shotgun (WGS) project has the project accession VWZN00000000. This version of the project (01) has the accession number VWZN01000000, and consists of sequences VWZN01000001-VWZN01038895. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 50x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..38895 /organism="Regulus satrapa" /mol_type="genomic DNA" /isolate="B10K-DU-001-18" /specimen_voucher="USNM:601552" /db_xref="taxon:13245" /sex="female" /tissue_type="muscle" /country="USA" /lat_lon="36.64 N 81.61 W" /collection_date="03-Jun-2000" WGS VWZN01000001-VWZN01038895 // LOCUS VZRC01000000 3579 rc DNA linear VRT 10-JUL-2020 DEFINITION Chunga burmeisteri isolate B10K-CU-031-22, whole genome shotgun sequencing project. ACCESSION VZRC00000000 VERSION VZRC00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253760 KEYWORDS WGS. SOURCE Chunga burmeisteri (Black-legged seriema) ORGANISM Chunga burmeisteri Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Cariamiformes; Cariamidae; Chunga. REFERENCE 1 (bases 1 to 3579) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 3579) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (19-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Chunga burmeisteri whole genome shotgun (WGS) project has the project accession VZRC00000000. This version of the project (01) has the accession number VZRC01000000, and consists of sequences VZRC01000001-VZRC01003579. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 50x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..3579 /organism="Chunga burmeisteri" /mol_type="genomic DNA" /isolate="B10K-CU-031-22" /specimen_voucher="UWBM:77230" /db_xref="taxon:1352770" /sex="female" /country="Bolivia" /lat_lon="19.40 S 63.45 W" /collection_date="07-May-2002" WGS VZRC01000001-VZRC01003579 // LOCUS VYZL01000000 13415 rc DNA linear VRT 10-JUL-2020 DEFINITION Bucorvus abyssinicus isolate B10K-DU-012-80, whole genome shotgun sequencing project. ACCESSION VYZL00000000 VERSION VYZL00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253919 KEYWORDS WGS. SOURCE Bucorvus abyssinicus (Abyssinian ground-hornbill) ORGANISM Bucorvus abyssinicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Bucerotiformes; Bucorvidae; Bucorvus. REFERENCE 1 (bases 1 to 13415) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 13415) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Bucorvus abyssinicus whole genome shotgun (WGS) project has the project accession VYZL00000000. This version of the project (01) has the accession number VYZL01000000, and consists of sequences VYZL01000001-VYZL01013415. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 93x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..13415 /organism="Bucorvus abyssinicus" /mol_type="genomic DNA" /isolate="B10K-DU-012-80" /db_xref="taxon:153643" /collection_date="30-Oct-2008" WGS VYZL01000001-VYZL01013415 // LOCUS VYZH01000000 14498 rc DNA linear VRT 10-JUL-2020 DEFINITION Probosciger aterrimus isolate B10K-DU-017-47, whole genome shotgun sequencing project. ACCESSION VYZH00000000 VERSION VYZH00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253926 KEYWORDS WGS. SOURCE Probosciger aterrimus (palm cockatoo) ORGANISM Probosciger aterrimus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Psittaciformes; Cacatuidae; Probosciger. REFERENCE 1 (bases 1 to 14498) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 14498) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Probosciger aterrimus whole genome shotgun (WGS) project has the project accession VYZH00000000. This version of the project (01) has the accession number VYZH01000000, and consists of sequences VYZH01000001-VYZH01014498. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 105x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..14498 /organism="Probosciger aterrimus" /mol_type="genomic DNA" /isolate="B10K-DU-017-47" /specimen_voucher="USNM:615002" /db_xref="taxon:141839" /sex="male" WGS VYZH01000001-VYZH01014498 // LOCUS VYZG01000000 13415 rc DNA linear VRT 10-JUL-2020 DEFINITION Columbina picui isolate B10K-DU-021-26, whole genome shotgun sequencing project. ACCESSION VYZG00000000 VERSION VYZG00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253927 KEYWORDS WGS. SOURCE Columbina picui (picui ground-dove) ORGANISM Columbina picui Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Columbiformes; Columbidae; Columbina. REFERENCE 1 (bases 1 to 13415) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 13415) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Columbina picui whole genome shotgun (WGS) project has the project accession VYZG00000000. This version of the project (01) has the accession number VYZG01000000, and consists of sequences VYZG01000001-VYZG01013415. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 73x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..13415 /organism="Columbina picui" /mol_type="genomic DNA" /isolate="B10K-DU-021-26" /specimen_voucher="USNM:630476" /db_xref="taxon:115618" /sex="male" /tissue_type="mixed tissue sample" /country="Uruguay" /lat_lon="33.77 S 57.38 W" /collection_date="25-Aug-2002" WGS VYZG01000001-VYZG01013415 // LOCUS VYZI01000000 4902 rc DNA linear VRT 10-JUL-2020 DEFINITION Centropus unirufus isolate B10K-DU-017-25, whole genome shotgun sequencing project. ACCESSION VYZI00000000 VERSION VYZI00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253925 KEYWORDS WGS. SOURCE Centropus unirufus ORGANISM Centropus unirufus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Cuculiformes; Centropidae; Centropus. REFERENCE 1 (bases 1 to 4902) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 4902) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Centropus unirufus whole genome shotgun (WGS) project has the project accession VYZI00000000. This version of the project (01) has the accession number VYZI01000000, and consists of sequences VYZI01000001-VYZI01004902. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 56x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..4902 /organism="Centropus unirufus" /mol_type="genomic DNA" /isolate="B10K-DU-017-25" /specimen_voucher="USNM:607318" /db_xref="taxon:1118519" /sex="female" /tissue_type="mixed tissue sample" /country="Philippines" /lat_lon="17.85 N 121.98 E" /collection_date="06-May-1989" WGS VYZI01000001-VYZI01004902 // LOCUS VYZC01000000 4545 rc DNA linear VRT 10-JUL-2020 DEFINITION Mionectes macconnelli isolate B10K-DU-003-16, whole genome shotgun sequencing project. ACCESSION VYZC00000000 VERSION VYZC00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253879 KEYWORDS WGS. SOURCE Mionectes macconnelli (McConnell's flycatcher) ORGANISM Mionectes macconnelli Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Tyrannidae; Mionectes. REFERENCE 1 (bases 1 to 4545) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 4545) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Mionectes macconnelli whole genome shotgun (WGS) project has the project accession VYZC00000000. This version of the project (01) has the accession number VYZC01000000, and consists of sequences VYZC01000001-VYZC01004545. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 73x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..4545 /organism="Mionectes macconnelli" /mol_type="genomic DNA" /isolate="B10K-DU-003-16" /specimen_voucher="USNM:639118" /db_xref="taxon:254557" /sex="female" /tissue_type="mixed tissue sample" /country="Guyana" /lat_lon="5.98 N 61.05 W" /collection_date="15-Feb-2007" WGS VYZC01000001-VYZC01004545 // LOCUS VYZB01000000 4080 rc DNA linear VRT 10-JUL-2020 DEFINITION Crotophaga sulcirostris isolate B10K-DU-003-44, whole genome shotgun sequencing project. ACCESSION VYZB00000000 VERSION VYZB00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253881 KEYWORDS WGS. SOURCE Crotophaga sulcirostris (groove-billed ani) ORGANISM Crotophaga sulcirostris Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Cuculiformes; Crotophagidae; Crotophaga. REFERENCE 1 (bases 1 to 4080) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 4080) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Crotophaga sulcirostris whole genome shotgun (WGS) project has the project accession VYZB00000000. This version of the project (01) has the accession number VYZB01000000, and consists of sequences VYZB01000001-VYZB01004080. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 55x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..4080 /organism="Crotophaga sulcirostris" /mol_type="genomic DNA" /isolate="B10K-DU-003-44" /specimen_voucher="USNM:607659" /db_xref="taxon:33598" /sex="male" /tissue_type="muscle" /country="Panama" /lat_lon="9.15 N 82.06 W" /collection_date="09-Apr-1990" WGS VYZB01000001-VYZB01004080 // LOCUS VYZA01000000 11198 rc DNA linear VRT 10-JUL-2020 DEFINITION Neopipo cinnamomea isolate B10K-DU-004-15, whole genome shotgun sequencing project. ACCESSION VYZA00000000 VERSION VYZA00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253882 KEYWORDS WGS. SOURCE Neopipo cinnamomea ORGANISM Neopipo cinnamomea Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Tyrannidae; Neopipo. REFERENCE 1 (bases 1 to 11198) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 11198) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Neopipo cinnamomea whole genome shotgun (WGS) project has the project accession VYZA00000000. This version of the project (01) has the accession number VYZA01000000, and consists of sequences VYZA01000001-VYZA01011198. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 72x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..11198 /organism="Neopipo cinnamomea" /mol_type="genomic DNA" /isolate="B10K-DU-004-15" /specimen_voucher="USNM:586435" /db_xref="taxon:456388" /sex="female" /tissue_type="mixed tissue sample" /country="Guyana" /lat_lon="7.37 N 60.48 W" /collection_date="16-Sep-1997" WGS VYZA01000001-VYZA01011198 // LOCUS VYXH01000000 22572 rc DNA linear VRT 10-JUL-2020 DEFINITION Burhinus bistriatus isolate B10K-DU-001-64, whole genome shotgun sequencing project. ACCESSION VYXH00000000 VERSION VYXH00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253814 KEYWORDS WGS. SOURCE Burhinus bistriatus ORGANISM Burhinus bistriatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Burhinidae; Burhinus. REFERENCE 1 (bases 1 to 22572) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 22572) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (12-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Burhinus bistriatus whole genome shotgun (WGS) project has the project accession VYXH00000000. This version of the project (01) has the accession number VYXH01000000, and consists of sequences VYXH01000001-VYXH01022572. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 42x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..22572 /organism="Burhinus bistriatus" /mol_type="genomic DNA" /isolate="B10K-DU-001-64" /specimen_voucher="USNM:626233" /db_xref="taxon:240201" /sex="female" /tissue_type="muscle" /country="Guyana" /lat_lon="2.87 N 59.27 W" /collection_date="18-Apr-2000" WGS VYXH01000001-VYXH01022572 // LOCUS VWPW01000000 84860 rc DNA linear VRT 08-JUL-2020 DEFINITION Crypturellus undulatus isolate B10K-MSB-37135, whole genome shotgun sequencing project. ACCESSION VWPW00000000 VERSION VWPW00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253746 KEYWORDS WGS. SOURCE Crypturellus undulatus ORGANISM Crypturellus undulatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Tinamiformes; Tinamidae; Crypturellus. REFERENCE 1 (bases 1 to 84860) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 84860) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Crypturellus undulatus whole genome shotgun (WGS) project has the project accession VWPW00000000. This version of the project (01) has the accession number VWPW01000000, and consists of sequences VWPW01000001-VWPW01084860. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 95x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..84860 /organism="Crypturellus undulatus" /mol_type="genomic DNA" /isolate="B10K-MSB-37135" /specimen_voucher="MSB:37135" /db_xref="taxon:48396" /sex="female" /tissue_type="heart, liver, muscle" /country="Peru" /lat_lon="11.71 S 69.21 W" /collection_date="29-Jun-2011" WGS VWPW01000001-VWPW01084860 // LOCUS WEIT01000000 95402 rc DNA linear VRT 08-JUL-2020 DEFINITION Dryoscopus gambensis isolate B10K-DU-002-56, whole genome shotgun sequencing project. ACCESSION WEIT00000000 VERSION WEIT00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253866 KEYWORDS WGS. SOURCE Dryoscopus gambensis ORGANISM Dryoscopus gambensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Malaconotidae; Dryoscopus. REFERENCE 1 (bases 1 to 95402) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 95402) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-OCT-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Dryoscopus gambensis whole genome shotgun (WGS) project has the project accession WEIT00000000. This version of the project (01) has the accession number WEIT01000000, and consists of sequences WEIT01000001-WEIT01095402. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 42x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..95402 /organism="Dryoscopus gambensis" /mol_type="genomic DNA" /isolate="B10K-DU-002-56" /specimen_voucher="LSUMZ:Ornithology:B39311" /db_xref="taxon:85069" /sex="female" /tissue_type="muscle" /country="Ghana" /lat_lon="8.79 N 1.49 W" /collection_date="09-Feb-2000" WGS WEIT01000001-WEIT01095402 // LOCUS WEKX01000000 51629 rc DNA linear VRT 08-JUL-2020 DEFINITION Pitta sordida isolate B10K-DU-002-53, whole genome shotgun sequencing project. ACCESSION WEKX00000000 VERSION WEKX00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253864 KEYWORDS WGS. SOURCE Pitta sordida (hooded pitta) ORGANISM Pitta sordida Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Pittidae; Pitta. REFERENCE 1 (bases 1 to 51629) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 51629) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (11-OCT-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Pitta sordida whole genome shotgun (WGS) project has the project accession WEKX00000000. This version of the project (01) has the accession number WEKX01000000, and consists of sequences WEKX01000001-WEKX01051629. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 48x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..51629 /organism="Pitta sordida" /mol_type="genomic DNA" /isolate="B10K-DU-002-53" /specimen_voucher="LSUMZ:Ornithology:B51072" /db_xref="taxon:9163" /sex="female" /tissue_type="muscle" /country="Malaysia" /lat_lon="4.39 N 117.89 E" /collection_date="26-Jan-2005" WGS WEKX01000001-WEKX01051629 // LOCUS WEIS01000000 322726 rc DNA linear VRT 08-JUL-2020 DEFINITION Todus mexicanus isolate B10K-DU-002-69, whole genome shotgun sequencing project. ACCESSION WEIS00000000 VERSION WEIS00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253871 KEYWORDS WGS. SOURCE Todus mexicanus (puerto rican tody) ORGANISM Todus mexicanus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Coraciiformes; Todidae; Todus. REFERENCE 1 (bases 1 to 322726) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 322726) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-OCT-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Todus mexicanus whole genome shotgun (WGS) project has the project accession WEIS00000000. This version of the project (01) has the accession number WEIS01000000, and consists of sequences WEIS01000001-WEIS01322726. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 55x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..322726 /organism="Todus mexicanus" /mol_type="genomic DNA" /isolate="B10K-DU-002-69" /specimen_voucher="LSUMZ:Ornithology:B16815" /db_xref="taxon:135184" /sex="female" /tissue_type="muscle" /country="Puerto Rico" /lat_lon="17.99 N 67.17 W" /collection_date="17-Nov-1987" WGS WEIS01000001-WEIS01322726 // LOCUS WEIV01000000 69385 rc DNA linear VRT 08-JUL-2020 DEFINITION Calyptomena viridis isolate B10K-DU-002-55, whole genome shotgun sequencing project. ACCESSION WEIV00000000 VERSION WEIV00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253865 KEYWORDS WGS. SOURCE Calyptomena viridis (green broadbill) ORGANISM Calyptomena viridis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Eurylaimidae; Calyptomena. REFERENCE 1 (bases 1 to 69385) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 69385) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-OCT-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Calyptomena viridis whole genome shotgun (WGS) project has the project accession WEIV00000000. This version of the project (01) has the accession number WEIV01000000, and consists of sequences WEIV01000001-WEIV01069385. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 67x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..69385 /organism="Calyptomena viridis" /mol_type="genomic DNA" /isolate="B10K-DU-002-55" /specimen_voucher="LSUMZ:Ornithology:B36377" /db_xref="taxon:135972" /sex="female" /tissue_type="muscle" /country="Malaysia" /lat_lon="4.39 N 117.92 E" /collection_date="26-Jun-1999" WGS WEIV01000001-WEIV01069385 // LOCUS WEIU01000000 51963 rc DNA linear VRT 08-JUL-2020 DEFINITION Aegithalos caudatus isolate B10K-DU-002-10, whole genome shotgun sequencing project. ACCESSION WEIU00000000 VERSION WEIU00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253835 KEYWORDS WGS. SOURCE Aegithalos caudatus (Northern long-tailed tit) ORGANISM Aegithalos caudatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Aegithalidae; Aegithalos. REFERENCE 1 (bases 1 to 51963) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 51963) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-OCT-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Aegithalos caudatus whole genome shotgun (WGS) project has the project accession WEIU00000000. This version of the project (01) has the accession number WEIU01000000, and consists of sequences WEIU01000001-WEIU01051963. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 48x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..51963 /organism="Aegithalos caudatus" /mol_type="genomic DNA" /isolate="B10K-DU-002-10" /specimen_voucher="USNM:633354" /db_xref="taxon:73327" /sex="female" /tissue_type="muscle" /country="South Korea" /lat_lon="37.05 N 127.03 E" /collection_date="18-Oct-2004" WGS WEIU01000001-WEIU01051963 // LOCUS WEKY01000000 102616 rc DNA linear VRT 08-JUL-2020 DEFINITION Picathartes gymnocephalus isolate B10K-DU-012-30, whole genome shotgun sequencing project. ACCESSION WEKY00000000 VERSION WEKY00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253907 KEYWORDS WGS. SOURCE Picathartes gymnocephalus ORGANISM Picathartes gymnocephalus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Picathartidae; Picathartes. REFERENCE 1 (bases 1 to 102616) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 102616) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (11-OCT-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Picathartes gymnocephalus whole genome shotgun (WGS) project has the project accession WEKY00000000. This version of the project (01) has the accession number WEKY01000000, and consists of sequences WEKY01000001-WEKY01102616. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 53x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..102616 /organism="Picathartes gymnocephalus" /mol_type="genomic DNA" /isolate="B10K-DU-012-30" /specimen_voucher="LSUMZ:Ornithology:B30793" /db_xref="taxon:175131" /tissue_type="muscle" WGS WEKY01000001-WEKY01102616 // LOCUS VWPV01000000 213604 rc DNA linear VRT 08-JUL-2020 DEFINITION Geococcyx californianus isolate B10K-CU-031-07, whole genome shotgun sequencing project. ACCESSION VWPV00000000 VERSION VWPV00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253751 KEYWORDS WGS. SOURCE Geococcyx californianus ORGANISM Geococcyx californianus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Cuculiformes; Neomorphidae; Geococcyx. REFERENCE 1 (bases 1 to 213604) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 213604) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Geococcyx californianus whole genome shotgun (WGS) project has the project accession VWPV00000000. This version of the project (01) has the accession number VWPV01000000, and consists of sequences VWPV01000001-VWPV01213604. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 60x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..213604 /organism="Geococcyx californianus" /mol_type="genomic DNA" /isolate="B10K-CU-031-07" /specimen_voucher="LSUMZ:Ornithology:B58226" /db_xref="taxon:8947" /sex="female" /tissue_type="muscle" /country="USA" /lat_lon="26.18 N 98.28 W" /collection_date="16-Feb-2007" WGS VWPV01000001-VWPV01213604 // LOCUS WEKW01000000 67870 rc DNA linear VRT 08-JUL-2020 DEFINITION Sula dactylatra isolate B10K-DU-002-49, whole genome shotgun sequencing project. ACCESSION WEKW00000000 VERSION WEKW00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253860 KEYWORDS WGS. SOURCE Sula dactylatra ORGANISM Sula dactylatra Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Pelecaniformes; Sulidae; Sula. REFERENCE 1 (bases 1 to 67870) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 67870) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (11-OCT-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Sula dactylatra whole genome shotgun (WGS) project has the project accession WEKW00000000. This version of the project (01) has the accession number WEKW01000000, and consists of sequences WEKW01000001-WEKW01067870. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 42x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..67870 /organism="Sula dactylatra" /mol_type="genomic DNA" /isolate="B10K-DU-002-49" /specimen_voucher="LSUMZ:Ornithology:B38745" /db_xref="taxon:56068" /sex="female" /tissue_type="muscle" /country="USA" /lat_lon="28.27 N 89.99 W" /collection_date="29-Sep-2004" WGS WEKW01000001-WEKW01067870 // LOCUS WAAG01000000 201993 rc DNA linear VRT 08-JUL-2020 DEFINITION Tichodroma muraria isolate B10K-DU-012-47, whole genome shotgun sequencing project. ACCESSION WAAG00000000 VERSION WAAG00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253913 KEYWORDS WGS. SOURCE Tichodroma muraria ORGANISM Tichodroma muraria Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sittidae; Tichodroma. REFERENCE 1 (bases 1 to 201993) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 201993) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (25-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Tichodroma muraria whole genome shotgun (WGS) project has the project accession WAAG00000000. This version of the project (01) has the accession number WAAG01000000, and consists of sequences WAAG01000001-WAAG01201993. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 52x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..201993 /organism="Tichodroma muraria" /mol_type="genomic DNA" /isolate="B10K-DU-012-47" /specimen_voucher="UWBM:61504" /db_xref="taxon:237442" /sex="female" /country="Russia" /lat_lon="44.12 N 39.90 E" /collection_date="15-Jul-1998" WGS WAAG01000001-WAAG01201993 // LOCUS VWPX01000000 75803 rc DNA linear VRT 08-JUL-2020 DEFINITION Crypturellus soui isolate B10K-MSB-42743, whole genome shotgun sequencing project. ACCESSION VWPX00000000 VERSION VWPX00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253745 KEYWORDS WGS. SOURCE Crypturellus soui ORGANISM Crypturellus soui Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Tinamiformes; Tinamidae; Crypturellus. REFERENCE 1 (bases 1 to 75803) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 75803) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Crypturellus soui whole genome shotgun (WGS) project has the project accession VWPX00000000. This version of the project (01) has the accession number VWPX01000000, and consists of sequences VWPX01000001-VWPX01075803. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 80x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..75803 /organism="Crypturellus soui" /mol_type="genomic DNA" /isolate="B10K-MSB-42743" /specimen_voucher="MSB:42743" /db_xref="taxon:458187" /sex="female" /tissue_type="heart, liver, muscle" /country="Peru" /lat_lon="7.39 S 76.36 W" WGS VWPX01000001-VWPX01075803 // LOCUS WAAB01000000 134865 rc DNA linear VRT 08-JUL-2020 DEFINITION Piaya cayana isolate B10K-DU-008-47, whole genome shotgun sequencing project. ACCESSION WAAB00000000 VERSION WAAB00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253892 KEYWORDS WGS. SOURCE Piaya cayana (squirrel cuckoo) ORGANISM Piaya cayana Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Cuculiformes; Coccyzidae; Piaya. REFERENCE 1 (bases 1 to 134865) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 134865) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (19-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Piaya cayana whole genome shotgun (WGS) project has the project accession WAAB00000000. This version of the project (01) has the accession number WAAB01000000, and consists of sequences WAAB01000001-WAAB01134865. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 64x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..134865 /organism="Piaya cayana" /mol_type="genomic DNA" /isolate="B10K-DU-008-47" /specimen_voucher="USNM:632527" /db_xref="taxon:33601" /sex="female" /tissue_type="mixed tissue sample" /country="Guyana" /lat_lon="4.93 N 59.88 W" /collection_date="14-Jul-2004" WGS WAAB01000001-WAAB01134865 // LOCUS WAAD01000000 97455 rc DNA linear VRT 08-JUL-2020 DEFINITION Fregata magnificens isolate B10K-DU-002-48, whole genome shotgun sequencing project. ACCESSION WAAD00000000 VERSION WAAD00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253859 KEYWORDS WGS. SOURCE Fregata magnificens ORGANISM Fregata magnificens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Pelecaniformes; Fregatidae; Fregata. REFERENCE 1 (bases 1 to 97455) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 97455) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (19-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Fregata magnificens whole genome shotgun (WGS) project has the project accession WAAD00000000. This version of the project (01) has the accession number WAAD01000000, and consists of sequences WAAD01000001-WAAD01097455. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 40x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..97455 /organism="Fregata magnificens" /mol_type="genomic DNA" /isolate="B10K-DU-002-48" /specimen_voucher="LSUMZ:Ornithology:B24538" /db_xref="taxon:37042" /sex="female" /tissue_type="muscle" /country="USA" /collection_date="14-Apr-1994" WGS WAAD01000001-WAAD01097455 // LOCUS WEIX01000000 33501 rc DNA linear VRT 08-JUL-2020 DEFINITION Grus americana isolate B10K-DU-012-65, whole genome shotgun sequencing project. ACCESSION WEIX00000000 VERSION WEIX00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253918 KEYWORDS WGS. SOURCE Grus americana (Whooping crane) ORGANISM Grus americana Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Gruidae; Grus. REFERENCE 1 (bases 1 to 33501) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 33501) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-OCT-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Grus americana whole genome shotgun (WGS) project has the project accession WEIX00000000. This version of the project (01) has the accession number WEIX01000000, and consists of sequences WEIX01000001-WEIX01033501. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 45x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..33501 /organism="Grus americana" /mol_type="genomic DNA" /isolate="B10K-DU-012-65" /specimen_voucher="LSUMZ:Ornithology:B49100" /db_xref="taxon:9117" /sex="female" /tissue_type="muscle" /country="USA" /lat_lon="28.27 N 81.96 W" /collection_date="26-Mar-2002" WGS WEIX01000001-WEIX01033501 // LOCUS WEIW01000000 12629 rc DNA linear VRT 08-JUL-2020 DEFINITION Chloropsis hardwickii isolate B10K-IZ-033-78, whole genome shotgun sequencing project. ACCESSION WEIW00000000 VERSION WEIW00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253970 KEYWORDS WGS. SOURCE Chloropsis hardwickii ORGANISM Chloropsis hardwickii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Irenidae; Chloropsis. REFERENCE 1 (bases 1 to 12629) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 12629) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-OCT-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Chloropsis hardwickii whole genome shotgun (WGS) project has the project accession WEIW00000000. This version of the project (01) has the accession number WEIW01000000, and consists of sequences WEIW01000001-WEIW01012629. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 73x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..12629 /organism="Chloropsis hardwickii" /mol_type="genomic DNA" /isolate="B10K-IZ-033-78" /db_xref="taxon:667144" /sex="female" /tissue_type="muscle" /country="China" /lat_lon="26.17 N 119.12 E" WGS WEIW01000001-WEIW01012629 // LOCUS VYZU01000000 381577 rc DNA linear VRT 10-JUL-2020 DEFINITION Ceyx cyanopectus isolate B10K-DU-013-51, whole genome shotgun sequencing project. ACCESSION VYZU00000000 VERSION VYZU00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253921 KEYWORDS WGS. SOURCE Ceyx cyanopectus (Indigo-banded kingfisher) ORGANISM Ceyx cyanopectus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Coraciiformes; Alcedinidae; Ceyx. REFERENCE 1 (bases 1 to 381577) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 381577) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (17-FEB-2020) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Ceyx cyanopectus whole genome shotgun (WGS) project has the project accession VYZU00000000. This version of the project (01) has the accession number VYZU01000000, and consists of sequences VYZU01000001-VYZU01381577. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 70x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..381577 /organism="Ceyx cyanopectus" /mol_type="genomic DNA" /isolate="B10K-DU-013-51" /specimen_voucher="USNM:607346" /db_xref="taxon:390723" /sex="female" /tissue_type="mixed tissue sample" /country="Philippines" /lat_lon="17.92 N 122.03 E" /collection_date="29-Apr-1989" WGS VYZU01000001-VYZU01381577 // LOCUS WAAC01000000 117859 rc DNA linear VRT 10-JUL-2020 DEFINITION Larus smithsonianus isolate B10K-DU-002-28, whole genome shotgun sequencing project. ACCESSION WAAC00000000 VERSION WAAC00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253848 KEYWORDS WGS. SOURCE Larus smithsonianus (Larus argentatus smithsonianus) ORGANISM Larus smithsonianus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Laridae; Larus. REFERENCE 1 (bases 1 to 117859) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 117859) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (17-FEB-2020) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Larus smithsonianus whole genome shotgun (WGS) project has the project accession WAAC00000000. This version of the project (01) has the accession number WAAC01000000, and consists of sequences WAAC01000001-WAAC01117859. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 90x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..117859 /organism="Larus smithsonianus" /mol_type="genomic DNA" /isolate="B10K-DU-002-28" /specimen_voucher="USNM:641377" /db_xref="taxon:243888" /sex="female" /tissue_type="muscle" /country="Canada" /lat_lon="54.62 N 111.64 W" /collection_date="18-Jul-2007" WGS WAAC01000001-WAAC01117859 // LOCUS VWZR01000000 35945 rc DNA linear VRT 10-JUL-2020 DEFINITION Oceanodroma tethys isolate B10K-DU-001-32, whole genome shotgun sequencing project. ACCESSION VWZR00000000 VERSION VWZR00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253790 KEYWORDS WGS. SOURCE Oceanodroma tethys (Wedge-rumped storm-petrel) ORGANISM Oceanodroma tethys Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Procellariiformes; Hydrobatidae; Oceanodroma. REFERENCE 1 (bases 1 to 35945) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 35945) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Oceanodroma tethys whole genome shotgun (WGS) project has the project accession VWZR00000000. This version of the project (01) has the accession number VWZR01000000, and consists of sequences VWZR01000001-VWZR01035945. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 38x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..35945 /organism="Oceanodroma tethys" /mol_type="genomic DNA" /isolate="B10K-DU-001-32" /specimen_voucher="USNM:608101" /db_xref="taxon:79633" /sex="female" /tissue_type="muscle" /lat_lon="7.00 N 147.50 W" /collection_date="05-Nov-1990" WGS VWZR01000001-VWZR01035945 // LOCUS WBNI01000000 14367 rc DNA linear VRT 10-JUL-2020 DEFINITION Eolophus roseicapilla isolate B10K-DU-025-06, whole genome shotgun sequencing project. ACCESSION WBNI00000000 VERSION WBNI00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253931 KEYWORDS WGS. SOURCE Eolophus roseicapilla (galah) ORGANISM Eolophus roseicapilla Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Psittaciformes; Cacatuidae; Eolophus. REFERENCE 1 (bases 1 to 14367) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 14367) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (27-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Eolophus roseicapilla whole genome shotgun (WGS) project has the project accession WBNI00000000. This version of the project (01) has the accession number WBNI01000000, and consists of sequences WBNI01000001-WBNI01014367. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 55x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..14367 /organism="Eolophus roseicapilla" /mol_type="genomic DNA" /isolate="B10K-DU-025-06" /specimen_voucher="USNM:632230" /db_xref="taxon:176039" /sex="female" /tissue_type="mixed tissue sample" /country="Australia" /lat_lon="37.66 S 142.35 E" /collection_date="2002" WGS WBNI01000001-WBNI01014367 // LOCUS WBNG01000000 9456 rc DNA linear VRT 10-JUL-2020 DEFINITION Elachura formosa isolate B10K-IZCAS-20218, whole genome shotgun sequencing project. ACCESSION WBNG00000000 VERSION WBNG00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253967 KEYWORDS WGS. SOURCE Elachura formosa (spotted wren-babbler) ORGANISM Elachura formosa Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Elachuridae; Elachura. REFERENCE 1 (bases 1 to 9456) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 9456) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (29-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Elachura formosa whole genome shotgun (WGS) project has the project accession WBNG00000000. This version of the project (01) has the accession number WBNG01000000, and consists of sequences WBNG01000001-WBNG01009456. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths-LG v. 52488 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 65x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..9456 /organism="Elachura formosa" /mol_type="genomic DNA" /isolate="B10K-IZCAS-20218" /specimen_voucher="IZCAS:20218" /db_xref="taxon:1463973" /tissue_type="blood" /country="China" /lat_lon="27.91 N 117.89 E" WGS WBNG01000001-WBNG01009456 // LOCUS VYXC01000000 24360 rc DNA linear VRT 10-JUL-2020 DEFINITION Platysteira castanea isolate B10K-DU-001-71, whole genome shotgun sequencing project. ACCESSION VYXC00000000 VERSION VYXC00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253821 KEYWORDS WGS. SOURCE Platysteira castanea ORGANISM Platysteira castanea Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Platysteiridae; Platysteira. REFERENCE 1 (bases 1 to 24360) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 24360) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (12-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Platysteira castanea whole genome shotgun (WGS) project has the project accession VYXC00000000. This version of the project (01) has the accession number VYXC01000000, and consists of sequences VYXC01000001-VYXC01024360. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 50x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..24360 /organism="Platysteira castanea" /mol_type="genomic DNA" /isolate="B10K-DU-001-71" /specimen_voucher="USNM:627032" /db_xref="taxon:1160851" /sex="female" /tissue_type="muscle" /country="Gabon" /lat_lon="1.95 S 9.87 E" /collection_date="12-Mar-2002" WGS VYXC01000001-VYXC01024360 // LOCUS VXBN01000000 31009 rc DNA linear VRT 10-JUL-2020 DEFINITION Sinosuthora webbiana isolate B10K-DU-002-08, whole genome shotgun sequencing project. ACCESSION VXBN00000000 VERSION VXBN00000000.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12253833 KEYWORDS WGS. SOURCE Sinosuthora webbiana ORGANISM Sinosuthora webbiana Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Sylviidae; Sinosuthora. REFERENCE 1 (bases 1 to 31009) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 31009) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (07-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT The Sinosuthora webbiana whole genome shotgun (WGS) project has the project accession VXBN00000000. This version of the project (01) has the accession number VXBN01000000, and consists of sequences VXBN01000001-VXBN01031009. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 47x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..31009 /organism="Sinosuthora webbiana" /mol_type="genomic DNA" /isolate="B10K-DU-002-08" /specimen_voucher="USNM:633249" /db_xref="taxon:337173" /sex="female" /tissue_type="muscle" /country="South Korea" /lat_lon="35.88 N 126.63 E" /collection_date="04-Oct-2004" WGS VXBN01000001-VXBN01031009 // LOCUS JABXJD010000000 3656 rc DNA linear VRT 29-JUN-2020 DEFINITION Percina caprodes isolate individual 2, whole genome shotgun sequencing project. ACCESSION JABXJD000000000 VERSION JABXJD000000000.1 DBLINK BioProject: PRJNA638626 BioSample: SAMN15198648 KEYWORDS WGS. SOURCE Percina caprodes (logperch) ORGANISM Percina caprodes Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Etheostomatinae; Percina; Percina. REFERENCE 1 (bases 1 to 3656) AUTHORS Stange,M., Djambazian,H., Ragoussis,J. and Barrett,R. TITLE The genetic basis of adaptation to ionic gradients in yellow and log perch JOURNAL Unpublished REFERENCE 2 (bases 1 to 3656) AUTHORS Djambazian,H., Stange,M., Ragoussis,J. and Barrett,R. TITLE Direct Submission JOURNAL Submitted (17-JUN-2020) Human Genetics, McGill University, 740 Doctor Penfield, Montreal, Quebec H3A 0G1, Canada COMMENT The Percina caprodes whole genome shotgun (WGS) project has the project accession JABXJD000000000. This version of the project (01) has the accession number JABXJD010000000, and consists of sequences JABXJD010000001-JABXJD010003656. ##Genome-Assembly-Data-START## Assembly Date :: APR-2020 Assembly Method :: CANU v. 1.8 Polishing Method :: Pilon v. 1.23 Assembly Name :: MU_Pcap_1.0 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 45.0x Sequencing Technology :: Oxford Nanopore PromethION ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..3656 /organism="Percina caprodes" /mol_type="genomic DNA" /isolate="individual 2" /db_xref="taxon:54317" /tissue_type="muscle" /dev_stage="adult" /country="Canada: Ottawa River, Oka, QC" WGS JABXJD010000001-JABXJD010003656 // LOCUS JABXJE010000000 1876 rc DNA linear VRT 29-JUN-2020 DEFINITION Perca flavescens isolate individual 7, whole genome shotgun sequencing project. ACCESSION JABXJE000000000 VERSION JABXJE000000000.1 DBLINK BioProject: PRJNA638629 BioSample: SAMN15198649 KEYWORDS WGS. SOURCE Perca flavescens (yellow perch) ORGANISM Perca flavescens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Percinae; Perca. REFERENCE 1 (bases 1 to 1876) AUTHORS Stange,M., Djambazian,H., Ragoussis,J. and Barrett,R. TITLE The genetic basis of adaptation to ionic gradients in yellow and log perch JOURNAL Unpublished REFERENCE 2 (bases 1 to 1876) AUTHORS Djambazian,H., Stange,M., Ragoussis,J. and Barrett,R. TITLE Direct Submission JOURNAL Submitted (17-JUN-2020) Human Genetics, McGill University, 740 Doctor Penfield, Montreal, Quebec H3A 0G1, Canada COMMENT The Perca flavescens whole genome shotgun (WGS) project has the project accession JABXJE000000000. This version of the project (01) has the accession number JABXJE010000000, and consists of sequences JABXJE010000001-JABXJE010001876. ##Genome-Assembly-Data-START## Assembly Date :: APR-2020 Assembly Method :: CANU v. 1.8 Polishing Method :: Pilon v. 1.23 Assembly Name :: MU_Pfla_1.0 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 30.0x Sequencing Technology :: Oxford Nanopore PromethION ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1876 /organism="Perca flavescens" /mol_type="genomic DNA" /isolate="individual 7" /db_xref="taxon:8167" /tissue_type="muscle" /dev_stage="adult" /country="Canada: Ottawa River, Oka, QC" WGS JABXJE010000001-JABXJE010001876 // LOCUS JABWDN010000000 4333 rc DNA linear VRT 23-JUN-2020 DEFINITION Megalops cyprinoides isolate fMegCyp1, whole genome shotgun sequencing project. ACCESSION JABWDN000000000 VERSION JABWDN000000000.1 DBLINK BioProject: PRJNA561968 BioSample: SAMN12623619 KEYWORDS WGS. SOURCE Megalops cyprinoides (Indo-Pacific tarpon) ORGANISM Megalops cyprinoides Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Elopiformes; Megalopidae; Megalops. REFERENCE 1 (bases 1 to 4333) AUTHORS Myers,G., Pippel,M., Whibley,A., Formenti,G., Winkler,S., Fedrigo,O., Pelan,S., Wood,J., Howe,K., Venkatesh,B., Durbin,R. and Jarvis,E.D. TITLE Megalops cyprinoides (Indo-Pacific tarpon) genome, fMegCyp1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 4333) AUTHORS Myers,G., Pippel,M., Whibley,A., Formenti,G., Winkler,S., Fedrigo,O., Pelan,S., Wood,J., Howe,K., Venkatesh,B., Durbin,R. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (05-JUN-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Megalops cyprinoides whole genome shotgun (WGS) project has the project accession JABWDN000000000. This version of the project (01) has the accession number JABWDN010000000, and consists of sequences JABWDN010000001-JABWDN010004333. This assembly represents the alternate haplotype of the diploid genome Megalops cyprinoides. The principal haplotype sequences are in WGS project JABWDM000000000. ##Genome-Assembly-Data-START## Assembly Date :: 24-APR-2020 Assembly Method :: FALCON v. DX 2.0.0; FALCON-Unzip v. DX 1.1.0; purge_dups v. DX 19-08-10; scaff10X v. DX 2.0.3; bionano Solve v. DX 3.4.0; Salsa2 HiC v. DX 2.2.0; Arrow polishing and gap filling v. DX 7.0.1.1; Longranger Align v. DX 2.2.2.1; freebayes v. DX 19-07-11; gEVAL manual curation v. 2020-04-24; VGP assembly pipeline v. 1.6 Assembly Name :: fMegCyp1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 104.34x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..4333 /organism="Megalops cyprinoides" /mol_type="genomic DNA" /isolate="fMegCyp1" /db_xref="taxon:118141" /tissue_type="whole body" /dev_stage="adult" /country="Singapore" /lat_lon="1.3521 N 103.8198 E" /collection_date="24-Aug-2018" /collected_by="Byrappa Venkatesh" WGS JABWDN010000001-JABWDN010004333 // LOCUS JABXNW010000000 1395 rc DNA linear VRT 23-JUN-2020 DEFINITION Nyctibius grandis isolate bNycGra1, whole genome shotgun sequencing project. ACCESSION JABXNW000000000 VERSION JABXNW000000000.1 DBLINK BioProject: PRJNA562021 BioSample: SAMN12622411 KEYWORDS WGS. SOURCE Nyctibius grandis ORGANISM Nyctibius grandis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Caprimulgimorphae; Caprimulgiformes; Nyctibiidae; Nyctibius. REFERENCE 1 (bases 1 to 1395) AUTHORS Gilbert,M.T.P., Carrasco,T., Uliano Da Silva,M., Formenti,G., Mountcastle,J., Haase,B., Balacco,J., Graves,G., O'Shea,B., Collins,J., Wood,J., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Nyctibius grandis (Great Potoo) genome, bNycGra1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 1395) AUTHORS Gilbert,M.T.P., Carrasco,T., Uliano Da Silva,M., Formenti,G., Mountcastle,J., Haase,B., Balacco,J., Graves,G., O'Shea,B., Collins,J., Wood,J., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (07-JUN-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Nyctibius grandis whole genome shotgun (WGS) project has the project accession JABXNW000000000. This version of the project (01) has the accession number JABXNW010000000, and consists of sequences JABXNW010000001-JABXNW010001395. This assembly represents the alternate haplotype of the diploid genome Nyctibius grandis. The principal haplotype sequences are in WGS project JABXNV000000000. ##Genome-Assembly-Data-START## Assembly Date :: 02-MAR-2020 Assembly Method :: FALCON 1.3.0 v. 2018.31.08-03.06; FALCON-Unzip v. 1.2.0 6.0.0.47841; purge_dups v. github ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b; bionano Solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow polishing and gap filling v. SMRTLink7.0.1; Longranger Align v. 2.2.2; freebayes v. 1.3.1; gEVAL manual curation v. 2020-03-02; VGP assembly pipeline v. 1.6 Assembly Name :: bNycGra1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 88.4x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1395 /organism="Nyctibius grandis" /mol_type="genomic DNA" /isolate="bNycGra1" /db_xref="taxon:48427" /sex="female" /tissue_type="muscle" /dev_stage="adult" /country="Guyana: St. Cuthbert's Mission Road, Linden Highway" /lat_lon="6.18 N 58.13 W" /collection_date="15-Oct-2010" /collected_by="O'Shea B.J., Gary Graves" WGS JABXNW010000001-JABXNW010001395 // LOCUS JABXNV010000000 191 rc DNA linear VRT 23-JUN-2020 DEFINITION Nyctibius grandis isolate bNycGra1, whole genome shotgun sequencing project. ACCESSION JABXNV000000000 VERSION JABXNV000000000.1 DBLINK BioProject: PRJNA562020 BioSample: SAMN12622411 KEYWORDS WGS. SOURCE Nyctibius grandis ORGANISM Nyctibius grandis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Caprimulgimorphae; Caprimulgiformes; Nyctibiidae; Nyctibius. REFERENCE 1 (bases 1 to 191) AUTHORS Gilbert,M.T.P., Carrasco,T., Uliano Da Silva,M., Formenti,G., Mountcastle,J., Haase,B., Balacco,J., Graves,G., O'Shea,B., Collins,J., Wood,J., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Nyctibius grandis (Great Potoo) genome, bNycGra1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 191) AUTHORS Gilbert,M.T.P., Carrasco,T., Uliano Da Silva,M., Formenti,G., Mountcastle,J., Haase,B., Balacco,J., Graves,G., O'Shea,B., Collins,J., Wood,J., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (07-JUN-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Nyctibius grandis whole genome shotgun (WGS) project has the project accession JABXNV000000000. This version of the project (01) has the accession number JABXNV010000000, and consists of sequences JABXNV010000001-JABXNV010000191. This assembly represents the principal haplotype of the diploid genome Nyctibius grandis and includes the chromosomes. The alternate haplotype sequences are in WGS project JABXNW000000000. ##Genome-Assembly-Data-START## Assembly Date :: 02-MAR-2020 Assembly Method :: FALCON 1.3.0 v. 2018.31.08-03.06; FALCON-Unzip v. 1.2.0 6.0.0.47841; purge_dups v. github ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b; bionano Solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow polishing and gap filling v. SMRTLink7.0.1; Longranger Align v. 2.2.2; freebayes v. 1.3.1; gEVAL manual curation v. 2020-03-02; VGP assembly pipeline v. 1.6 Assembly Name :: bNycGra1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 88.4x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..191 /organism="Nyctibius grandis" /mol_type="genomic DNA" /isolate="bNycGra1" /db_xref="taxon:48427" /sex="female" /tissue_type="muscle" /dev_stage="adult" /country="Guyana: St. Cuthbert's Mission Road, Linden Highway" /lat_lon="6.18 N 58.13 W" /collection_date="15-Oct-2010" /collected_by="O'Shea B.J., Gary Graves" WGS JABXNV010000001-JABXNV010000191 WGS_SCAFLD CM023732-CM023769 WGS_SCAFLD CM023771 // LOCUS JABWDM010000000 207 rc DNA linear VRT 23-JUN-2020 DEFINITION Megalops cyprinoides isolate fMegCyp1, whole genome shotgun sequencing project. ACCESSION JABWDM000000000 VERSION JABWDM000000000.1 DBLINK BioProject: PRJNA561967 BioSample: SAMN12623619 KEYWORDS WGS. SOURCE Megalops cyprinoides (Indo-Pacific tarpon) ORGANISM Megalops cyprinoides Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Elopiformes; Megalopidae; Megalops. REFERENCE 1 (bases 1 to 207) AUTHORS Myers,G., Pippel,M., Whibley,A., Formenti,G., Winkler,S., Fedrigo,O., Pelan,S., Wood,J., Howe,K., Venkatesh,B., Durbin,R. and Jarvis,E.D. TITLE Megalops cyprinoides (Indo-Pacific tarpon) genome, fMegCyp1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 207) AUTHORS Myers,G., Pippel,M., Whibley,A., Formenti,G., Winkler,S., Fedrigo,O., Pelan,S., Wood,J., Howe,K., Venkatesh,B., Durbin,R. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (05-JUN-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Megalops cyprinoides whole genome shotgun (WGS) project has the project accession JABWDM000000000. This version of the project (01) has the accession number JABWDM010000000, and consists of sequences JABWDM010000001-JABWDM010000207. This assembly represents the principal haplotype of the diploid genome Megalops cyprinoides and includes the chromosomes. The alternate haplotype sequences are in WGS project JABWDN000000000. ##Genome-Assembly-Data-START## Assembly Date :: 24-APR-2020 Assembly Method :: FALCON v. DX 2.0.0; FALCON-Unzip v. DX 1.1.0; purge_dups v. DX 19-08-10; scaff10X v. DX 2.0.3; bionano Solve v. DX 3.4.0; Salsa2 HiC v. DX 2.2.0; Arrow polishing and gap filling v. DX 7.0.1.1; Longranger Align v. DX 2.2.2.1; freebayes v. DX 19-07-11; gEVAL manual curation v. 2020-04-24; VGP assembly pipeline v. 1.6 Assembly Name :: fMegCyp1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 104.34x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..207 /organism="Megalops cyprinoides" /mol_type="genomic DNA" /isolate="fMegCyp1" /db_xref="taxon:118141" /tissue_type="whole body" /dev_stage="adult" /country="Singapore" /lat_lon="1.3521 N 103.8198 E" /collection_date="24-Aug-2018" /collected_by="Byrappa Venkatesh" WGS JABWDM010000001-JABWDM010000207 WGS_SCAFLD CM023707-CM023731 WGS_SCAFLD CM023770 // LOCUS JABVME010000000 90 rc DNA linear VRT 23-JUN-2020 DEFINITION Electrophorus electricus isolate fEleEle1, whole genome shotgun sequencing project. ACCESSION JABVME000000000 VERSION JABVME000000000.1 DBLINK BioProject: PRJNA561981 BioSample: SAMN12623625 KEYWORDS WGS. SOURCE Electrophorus electricus (electric eel) ORGANISM Electrophorus electricus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Gymnotiformes; Gymnotoidei; Gymnotidae; Electrophorus. REFERENCE 1 (bases 1 to 90) AUTHORS Myers,G., Meyer,A., Fedrigo,O., Formenti,G., Rhie,A., Tracey,A., Sims,Y. and Jarvis,E.D. TITLE Electrophorus electricus (electric eel) genome, fEleEle1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 90) AUTHORS Myers,G., Meyer,A., Fedrigo,O., Formenti,G., Rhie,A., Tracey,A., Sims,Y. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (31-MAY-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Electrophorus electricus whole genome shotgun (WGS) project has the project accession JABVME000000000. This version of the project (01) has the accession number JABVME010000000, and consists of sequences JABVME010000001-JABVME010000090. This assembly represents the principal haplotype of the diploid genome Electrophorus electricus and includes the chromosomes. The alternate haplotype sequences are in WGS project JABVMF000000000. ##Genome-Assembly-Data-START## Assembly Date :: 17-MAR-2020 Assembly Method :: FALCON v. 2018.31.08-03.06; FALCON-Unzip v. 7.0.1.66975; purge_dups v. v1; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.4; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. SMRTLink7.0.1; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2020-03-17; VGP assembly pipeline individual v. 1.6 Assembly Name :: fEleEle1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 52.97x Sequencing Technology :: PacBio Sequel I CLR; llumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..90 /organism="Electrophorus electricus" /mol_type="genomic DNA" /isolate="fEleEle1" /db_xref="taxon:8005" /tissue_type="liver" /dev_stage="juvenile" /country="Netherlands: Dejong Marinelife, Rotterdam" /lat_lon="51.9244201 N 4.4777325 E" /collection_date="29-Nov-2018" /collected_by="Nidal Karagic" WGS JABVME010000001-JABVME010000090 WGS_SCAFLD CM023680-CM023706 // LOCUS JABVMG010000000 53 rc DNA linear VRT 18-JUN-2020 DEFINITION Anguilla anguilla isolate fAngAng1, whole genome shotgun sequencing project. ACCESSION JABVMG000000000 VERSION JABVMG000000000.1 DBLINK BioProject: PRJNA561979 BioSample: SAMN12623627 KEYWORDS WGS. SOURCE Anguilla anguilla (European eel) ORGANISM Anguilla anguilla Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Anguilliformes; Anguillidae; Anguilla. REFERENCE 1 (bases 1 to 53) AUTHORS Myers,G., Pippel,M., Winkler,S., De Panis,D., Meyer,A., Reichard,M., Karagic,N., Formenti,G., Tracey,A., Sims,Y., Howe,K., Durbin,R. and Jarvis,E.D. TITLE Anguilla anguilla (European eel) genome, fAngAng1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 53) AUTHORS Myers,G., Pippel,M., Winkler,S., De Panis,D., Meyer,A., Reichard,M., Karagic,N., Formenti,G., Tracey,A., Sims,Y., Howe,K., Durbin,R. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (31-MAY-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Anguilla anguilla whole genome shotgun (WGS) project has the project accession JABVMG000000000. This version of the project (01) has the accession number JABVMG010000000, and consists of sequences JABVMG010000001-JABVMG010000053. This assembly represents the principal haplotype of the diploid genome Anguilla anguilla and includes the chromosomes. The alternate haplotype sequences are in WGS project JABVMH000000000. ##Genome-Assembly-Data-START## Assembly Date :: 04-FEB-2020 Assembly Method :: FALCON v. 1.3.0; FALCON-Unzip v. 1.2.0; purge_dups v. github ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b; bionano Solve v. 3.4_06042019a; Salsa2 HiC v. 2.2; Arrow polishing and gap filling v. SMRTLink7.0.1; Longranger Align v. 2.2.2; freebayes v. 1.3.1; gEVAL manual curation v. 2020-02-04; VGP assembly pipeline v. 1.6 Assembly Name :: fAngAng1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 51.23x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..53 /organism="Anguilla anguilla" /mol_type="genomic DNA" /isolate="fAngAng1" /db_xref="taxon:7936" /tissue_type="liver" /dev_stage="adult" /country="Czech Republic: Elbe River" /lat_lon="50.2909 N 14.4971 E" /collection_date="29-Nov-2018" /collected_by="Martin Reichard" WGS JABVMG010000001-JABVMG010000053 WGS_SCAFLD CM023565-CM023583 // LOCUS JABVMC010000000 155 rc DNA linear VRT 18-JUN-2020 DEFINITION Antennarius maculatus isolate fAntMac1, whole genome shotgun sequencing project. ACCESSION JABVMC000000000 VERSION JABVMC000000000.1 DBLINK BioProject: PRJNA561983 BioSample: SAMN12623626 KEYWORDS WGS. SOURCE Antennarius maculatus (warty frogfish) ORGANISM Antennarius maculatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Lophiiformes; Antennarioidei; Antennariidae; Antennarius. REFERENCE 1 (bases 1 to 155) AUTHORS Myers,G., Lama,T., Pippel,M., Winkler,S., Meyer,A., Kaut,A., Woltering,J., Tracey,A., Wood,J., Formenti,G., Howe,K., Durbin,R. and Jarvis,E.D. TITLE Antennarius maculatus (warty frogfish) genome, fAntMac1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 155) AUTHORS Myers,G., Lama,T., Pippel,M., Winkler,S., Meyer,A., Kaut,A., Woltering,J., Tracey,A., Wood,J., Formenti,G., Howe,K., Durbin,R. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (31-MAY-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Antennarius maculatus whole genome shotgun (WGS) project has the project accession JABVMC000000000. This version of the project (01) has the accession number JABVMC010000000, and consists of sequences JABVMC010000001-JABVMC010000155. This assembly represents the principal haplotype of the diploid genome Antennarius maculatus and includes the chromosomes. The alternate haplotype sequences are in WGS project JABVMD000000000. ##Genome-Assembly-Data-START## Assembly Date :: 04-FEB-2020 Assembly Method :: FALCON v. 1.3.0; FALCON-Unzip v. 1.2.0; purge_dups v. github ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b; bionano Solve v. 3.4_06042019a; Salsa2 HiC v. 2.2; Arrow polishing and gap filling v. SMRTLink7.0.1; Longranger Align v. 2.2.2; freebayes v. 1.3.1; gEVAL manual curation v. 2020-02-04; VGP assembly pipeline v. 1.6 Assembly Name :: fAntMac1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 141.0x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..155 /organism="Antennarius maculatus" /mol_type="genomic DNA" /isolate="fAntMac1" /db_xref="taxon:882753" /tissue_type="muscle, liver" /dev_stage="adult" /country="Netherlands: Dejong Marinelife, Rotterdam" /lat_lon="51.9244201 N 4.4777325 E" /collection_date="11-Jul-2017" /collected_by="Andreas Kaut, Joost Woltering" WGS JABVMC010000001-JABVMC010000155 WGS_SCAFLD CM023606-CM023630 // LOCUS VHLF02000000 15041 rc DNA linear MAM 12-JUN-2020 DEFINITION Lynx canadensis isolate LIC74, whole genome shotgun sequencing project. ACCESSION VHLF00000000 VERSION VHLF00000000.2 DBLINK BioProject: PRJNA489108 BioSample: SAMN09948483 KEYWORDS WGS. SOURCE Lynx canadensis (Canada lynx) ORGANISM Lynx canadensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Lynx. REFERENCE 1 (bases 1 to 15041) AUTHORS Lama,T., Johnson,W., Organ,J.F., Vashon,J., Fedrigo,O., Mountcastle,J., Haase,B., Rhie,A., Koren,S., Phillippy,A., Collins,J., Chow,W., Howe,K., Lewin,H., Durbin,R., Myers,G., O'Brien,S., Koepfli,K.-P., Ryder,O., Damas,J., Formenti,G. and Jarvis,E.D. TITLE (UPDATE) Lynx canadensis (Canada Lynx) genome, mLynCan4, alternate haplotype, v2 JOURNAL Unpublished REFERENCE 2 (bases 1 to 15041) AUTHORS Lama,T., Johnson,W., Organ,J.F., Vashon,J., Fedrigo,O., Mountcastle,J., Haase,B., Rhie,A., Koren,S., Phillippy,A., Collins,J., Chow,W., Howe,K., Lewin,H., Durbin,R., Myers,G., O'Brien,S., Koepfli,K.-P., Ryder,O., Damas,J., Formenti,G. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (13-MAY-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA REFERENCE 3 (bases 1 to 15041) AUTHORS Lama,T., Johnson,W., Organ,J.F., Vashon,J., Fedrigo,O., Mountcastle,J., Haase,B., Rhie,A., Koren,S., Phillippy,A., Collins,J., Chow,W., Howe,K., Lewin,H., Durbin,R., Myers,G., O'Brien,S., Koepfli,K.-P., Ryder,O., Damas,J., Formenti,G. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (31-MAY-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT On Jun 12, 2020 this sequence version replaced VHLF00000000.1. The Lynx canadensis whole genome shotgun (WGS) project has the project accession VHLF00000000. This version of the project (02) has the accession number VHLF02000000, and consists of sequences VHLF02000001-VHLF02015041. This assembly represents the alternate haplotype of the diploid genome Lynx canadensis. The principal haplotype sequences are in WGS project VHLE00000000. ##Genome-Assembly-Data-START## Assembly Date :: 03-APR-2020 Assembly Method :: FALCON v. 5.1.1; FALCON-Unzip v. 1.0.2; purge_haplotigs v. bitbucket 7.10.2018; scaff10x v. 2.1; Bionano Solve 2 enzyme v. 3.2.1; Salsa2 v. 2.2; Arrow v. 5.1.0.26412; longranger align v. 2.2.2; freebayes v. 1.2.0; gEVAL manual curation v. 2020-04-03; VGP standard assembly pipeline v. 1.5 Assembly Name :: mLynCan4.alt.v2 Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 72.0x Sequencing Technology :: PacBio Sequel I; 10X genome; Bionano Genomics; Arima Genomics Hi-C ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..15041 /organism="Lynx canadensis" /mol_type="genomic DNA" /isolate="LIC74" /db_xref="taxon:61383" /sex="male" /tissue_type="muscle, distal limb" /country="USA: Aroostook County, Maine" /lat_lon="42.2466 N 71.6746 W" /collection_date="2017-12-05" /collected_by="Tanya Lama" WGS VHLF02000001-VHLF02015041 // LOCUS JABVMH010000000 2338 rc DNA linear VRT 12-JUN-2020 DEFINITION Anguilla anguilla isolate fAngAng1, whole genome shotgun sequencing project. ACCESSION JABVMH000000000 VERSION JABVMH000000000.1 DBLINK BioProject: PRJNA561984 BioSample: SAMN12623627 KEYWORDS WGS. SOURCE Anguilla anguilla (European eel) ORGANISM Anguilla anguilla Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Anguilliformes; Anguillidae; Anguilla. REFERENCE 1 (bases 1 to 2338) AUTHORS Myers,G., Pippel,M., Winkler,S., De Panis,D., Meyer,A., Reichard,M., Karagic,N., Formenti,G., Tracey,A., Sims,Y., Howe,K., Durbin,R. and Jarvis,E.D. TITLE Anguilla anguilla (European eel) genome, fAngAng1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 2338) AUTHORS Myers,G., Pippel,M., Winkler,S., De Panis,D., Meyer,A., Reichard,M., Karagic,N., Formenti,G., Tracey,A., Sims,Y., Howe,K., Durbin,R. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (31-MAY-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Anguilla anguilla whole genome shotgun (WGS) project has the project accession JABVMH000000000. This version of the project (01) has the accession number JABVMH010000000, and consists of sequences JABVMH010000001-JABVMH010002338. This assembly represents the alternate haplotype of the diploid genome Anguilla anguilla. The principal haplotype sequences are in WGS project JABVMG000000000. ##Genome-Assembly-Data-START## Assembly Date :: 04-FEB-2020 Assembly Method :: FALCON v. 1.3.0; FALCON-Unzip v. 1.2.0; purge_dups v. github ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b; bionano Solve v. 3.4_06042019a; Salsa2 HiC v. 2.2; Arrow polishing and gap filling v. SMRTLink7.0.1; Longranger Align v. 2.2.2; freebayes v. 1.3.1; gEVAL manual curation v. 2020-02-04; VGP assembly pipeline v. 1.6 Assembly Name :: fAngAng1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 51.23x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..2338 /organism="Anguilla anguilla" /mol_type="genomic DNA" /isolate="fAngAng1" /db_xref="taxon:7936" /tissue_type="liver" /dev_stage="adult" /country="Czech Republic: Elbe River" /lat_lon="50.2909 N 14.4971 E" /collection_date="29-Nov-2018" /collected_by="Martin Reichard" WGS JABVMH010000001-JABVMH010002338 // LOCUS JABVMF010000000 2629 rc DNA linear VRT 12-JUN-2020 DEFINITION Electrophorus electricus isolate fEleEle1, whole genome shotgun sequencing project. ACCESSION JABVMF000000000 VERSION JABVMF000000000.1 DBLINK BioProject: PRJNA561982 BioSample: SAMN12623625 KEYWORDS WGS. SOURCE Electrophorus electricus (electric eel) ORGANISM Electrophorus electricus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Gymnotiformes; Gymnotoidei; Gymnotidae; Electrophorus. REFERENCE 1 (bases 1 to 2629) AUTHORS Myers,G., Meyer,A., Fedrigo,O., Formenti,G., Rhie,A., Tracey,A., Sims,Y. and Jarvis,E.D. TITLE Electrophorus electricus (electric eel) genome, fEleEle1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 2629) AUTHORS Myers,G., Meyer,A., Fedrigo,O., Formenti,G., Rhie,A., Tracey,A., Sims,Y. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (31-MAY-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Electrophorus electricus whole genome shotgun (WGS) project has the project accession JABVMF000000000. This version of the project (01) has the accession number JABVMF010000000, and consists of sequences JABVMF010000001-JABVMF010002629. This assembly represents the alternate haplotype of the diploid genome Electrophorus electricus. The principal haplotype sequences are in WGS project JABVME000000000. ##Genome-Assembly-Data-START## Assembly Date :: 17-MAR-2020 Assembly Method :: FALCON v. 2018.31.08-03.06; FALCON-Unzip v. 7.0.1.66975; purge_dups v. v1; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.4; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. SMRTLink7.0.1; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2020-03-17; VGP assembly pipeline individual v. 1.6 Assembly Name :: fEleEle1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 52.97x Sequencing Technology :: PacBio Sequel I CLR; llumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..2629 /organism="Electrophorus electricus" /mol_type="genomic DNA" /isolate="fEleEle1" /db_xref="taxon:8005" /tissue_type="liver" /dev_stage="juvenile" /country="Netherlands: Dejong Marinelife, Rotterdam" /lat_lon="51.9244201 N 4.4777325 E" /collection_date="29-Nov-2018" /collected_by="Nidal Karagic" WGS JABVMF010000001-JABVMF010002629 // LOCUS JABVMD010000000 2294 rc DNA linear VRT 12-JUN-2020 DEFINITION Antennarius maculatus isolate fAntMac1, whole genome shotgun sequencing project. ACCESSION JABVMD000000000 VERSION JABVMD000000000.1 DBLINK BioProject: PRJNA561980 BioSample: SAMN12623626 KEYWORDS WGS. SOURCE Antennarius maculatus (warty frogfish) ORGANISM Antennarius maculatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Lophiiformes; Antennarioidei; Antennariidae; Antennarius. REFERENCE 1 (bases 1 to 2294) AUTHORS Myers,G., Lama,T., Pippel,M., Winkler,S., Meyer,A., Kaut,A., Woltering,J., Tracey,A., Wood,J., Formenti,G., Durbin,R. and Jarvis,E.D. TITLE Antennarius maculatus (warty frogfish) genome, fAntMac1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 2294) AUTHORS Myers,G., Lama,T., Pippel,M., Winkler,S., Meyer,A., Kaut,A., Woltering,J., Tracey,A., Wood,J., Formenti,G., Durbin,R. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (31-MAY-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Antennarius maculatus whole genome shotgun (WGS) project has the project accession JABVMD000000000. This version of the project (01) has the accession number JABVMD010000000, and consists of sequences JABVMD010000001-JABVMD010002294. This assembly represents the alternate haplotype of the diploid genome Antennarius maculatus. The principal haplotype sequences are in WGS project JABVMC000000000. ##Genome-Assembly-Data-START## Assembly Date :: 04-FEB-2020 Assembly Method :: FALCON v. 1.3.0; FALCON-Unzip v. 1.2.0; purge_dups v. github ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b; bionano Solve v. 3.4_06042019a; Salsa2 HiC v. 2.2; Arrow polishing and gap filling v. SMRTLink7.0.1; Longranger Align v. 2.2.2; freebayes v. 1.3.1; gEVAL manual curation v. 2020-02-04; VGP assembly pipeline v. 1.6 Assembly Name :: fAntMac1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 141.0x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..2294 /organism="Antennarius maculatus" /mol_type="genomic DNA" /isolate="fAntMac1" /db_xref="taxon:882753" /tissue_type="muscle, liver" /dev_stage="adult" /country="Netherlands: Dejong Marinelife, Rotterdam" /lat_lon="51.9244201 N 4.4777325 E" /collection_date="11-Jul-2017" /collected_by="Andreas Kaut, Joost Woltering" WGS JABVMD010000001-JABVMD010002294 // LOCUS CAHPTA010000000 1227 rc DNA linear VRT 03-JUN-2020 DEFINITION Danio rerio, whole genome shotgun sequencing project. ACCESSION CAHPTA000000000 VERSION CAHPTA000000000.1 DBLINK BioProject: PRJEB38589 BioSample: SAMEA4760846 KEYWORDS WGS. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (29-MAY-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Danio rerio whole genome shotgun (WGS) project has the project accession CAHPTA000000000. This version of the project (01) has the accession number CAHPTA010000000, and consists of sequences CAHPTA010000001-CAHPTA010001227. The assembly fDreABH1.1 is based on 67x PacBio Sequel II data generated by Gene Myers at the MPI of Molecular Cell Biology and Genetics, Dresden, 96x 10X Genomics Chromium data, BioNano data, and 83x Dovetail Hi-C data (from another individual, SAMEA104026397) generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: segregation of PacBio reads representing the two haplotypes using trioCanu and k-mers from the Illumina-sequenced parents (maternal: SAMEA3891248 at 143x coverage, and paternal: SAMEA3891249 at 136x coverage), separate assembly of each haplotype using Canu, polishing with Arrow from the binned reads, retained duplication removal with purge_dups, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, Hi-C based scaffolding with SALSA2, further Arrow polishing, and two rounds of FreeBayes Illumina polishing. Finally, the assembly was analysed and manually improved using gEVAL and marker placement from the high density genetic map SATMAP (PUBMED: 23594743). FEATURES Location/Qualifiers source 1..1227 /organism="Danio rerio" /mol_type="genomic DNA" /db_xref="taxon:7955" WGS CAHPTA010000001-CAHPTA010001227 // LOCUS AYNC02000000 25743 rc DNA linear INV 04-MAY-2020 DEFINITION Ephemera danica, whole genome shotgun sequencing project. ACCESSION AYNC00000000 VERSION AYNC00000000.2 DBLINK BioProject: PRJNA171755 BioSample: SAMN02264621 KEYWORDS WGS. SOURCE Ephemera danica ORGANISM Ephemera danica Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Palaeoptera; Ephemeroptera; Scapphodonta; Ephemeridae; Ephemera. REFERENCE 1 (bases 1 to 25743) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hernandez,B., Skinner,E., Javaid,M., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Hughes,D., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Ephemera danica Genome sequencing and assembly JOURNAL Unpublished REFERENCE 2 (bases 1 to 25743) AUTHORS Qu,J., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Downs,B., Dugan-Rocha,S., Elkadiri,S., Hernandez,B., Javaid,M., Jayaseelan,J.C., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Ongeri,F., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (05-NOV-2013) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA REFERENCE 3 (bases 1 to 25743) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hughes,D., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Osuji,N., Pu,L.-L., Puazo,M., Skinner,E., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (17-OCT-2017) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA COMMENT On Dec 12, 2017 this sequence version replaced AYNC00000000.1. The Ephemera danica whole genome shotgun (WGS) project has the project accession AYNC00000000. This version of the project (02) has the accession number AYNC02000000, and consists of sequences AYNC02000001-AYNC02025743. Annotation was added to the scaffolds and contigs on May 2020. ##Genome-Assembly-Data-START## Assembly Date :: APR-2016 Assembly Method :: AllPaths v. 35218; ATLAS-link v. 1.0; ATLAS-gapfill v. 2.2; redundans v. 0.12c Assembly Name :: Edan_2.0 Expected Final Version :: no Genome Coverage :: 207.7x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..25743 /organism="Ephemera danica" /mol_type="genomic DNA" /isolation_source="Collected directly from the wild" /db_xref="taxon:1049336" /sex="male" /country="Germany: North Rhine-Westphalia, Dumpelfeld" /lat_lon="50.438047 N 6.931415 E" /collection_date="Sep-2011" WGS AYNC02000001-AYNC02025743 WGS_SCAFLD KZ497563-KZ501820 // LOCUS JAAIYR010000000 53 rc DNA linear VRT 28-APR-2020 DEFINITION Esox lucius isolate fEsoLuc1, whole genome shotgun sequencing project. ACCESSION JAAIYR000000000 VERSION JAAIYR000000000.1 DBLINK BioProject: PRJNA561977 BioSample: SAMN12623624 KEYWORDS WGS. SOURCE Esox lucius (northern pike) ORGANISM Esox lucius Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox. REFERENCE 1 (bases 1 to 53) AUTHORS Myers,G., Karagic,N., Meyer,A., Pippel,M., Reichard,M., Winkler,S., Tracey,A., Sims,Y., Howe,K., Rhie,A., Formenti,G., Durbin,R., Fedrigo,O. and Jarvis,E.D. TITLE Esox lucius (northern pike) genome, fEsoLuc1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 53) AUTHORS Myers,G., Karagic,N., Meyer,A., Pippel,M., Reichard,M., Winkler,S., Tracey,A., Sims,Y., Howe,K., Rhie,A., Formenti,G., Durbin,R., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (18-FEB-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Esox lucius whole genome shotgun (WGS) project has the project accession JAAIYR000000000. This version of the project (01) has the accession number JAAIYR010000000, and consists of sequences JAAIYR010000001-JAAIYR010000053. This assembly represents the principal haplotype of the diploid genome Esox lucius and includes the chromosomes. The alternate haplotype sequences are in WGS project JAAIYS000000000. ##Genome-Assembly-Data-START## Assembly Date :: 10-JAN-2020 Assembly Method :: FALCON DNANexus v. 1.9.0; FALCON-Unzip DNANexus v. 1.0.6; purge_haplotigs v. v1.0.3+ 1.Nov.2018; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.4; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 7.0.1; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2020-01-10; VGP assembly pipeline v. 1.5 Assembly Name :: fEsoLuc1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 1.0x Sequencing Technology :: PacBio Sequel; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..53 /organism="Esox lucius" /mol_type="genomic DNA" /isolate="fEsoLuc1" /db_xref="taxon:8010" /tissue_type="liver, spleen" /dev_stage="adult" /country="Czech Republic: Jihlava River, Danube basin" /lat_lon="49.218 N 16.717 E" /collection_date="29-Nov-2018" /collected_by="Martin Reichard" WGS JAAIYR010000001-JAAIYR010000053 WGS_SCAFLD CM021593-CM021617 WGS_SCAFLD CM021655 // LOCUS JAAVWI010000000 930 rc DNA linear VRT 13-APR-2020 DEFINITION Melopsittacus undulatus isolate bMelUnd1, whole genome shotgun sequencing project. ACCESSION JAAVWI000000000 VERSION JAAVWI000000000.1 DBLINK BioProject: PRJNA561964 BioSample: SAMN12623090 KEYWORDS WGS. SOURCE Melopsittacus undulatus (budgerigar) ORGANISM Melopsittacus undulatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Psittaciformes; Psittaculidae; Melopsittacus. REFERENCE 1 (bases 1 to 930) AUTHORS Gedman,G., Mountcastle,J., Haase,B., Formenti,G., Wright,T., Apodaca,J., Pelan,S., Chow,W., Rhie,A., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Melopsittacus undulatus (budgerigar) genome, bMelUnd1, maternal haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 930) AUTHORS Gedman,G., Mountcastle,J., Haase,B., Formenti,G., Wright,T., Apodaca,J., Pelan,S., Chow,W., Rhie,A., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (23-MAR-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Melopsittacus undulatus whole genome shotgun (WGS) project has the project accession JAAVWI000000000. This version of the project (01) has the accession number JAAVWI010000000, and consists of sequences JAAVWI010000001-JAAVWI010000930. ##Genome-Assembly-Data-START## Assembly Date :: 30-AUG-2019 Assembly Method :: TrioCanu v. 1.8; purge_dups v. 1.0.0; Scaff 10x v. 4.1.0; Bionano solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow polishing and gap filling v. smrtlink_6.0.0.47841; Longranger Align v. 2.2.2; Freebayes v. 1.3.1; VGP assembly pipeline v. 1.6 Assembly Name :: bMelUnd1.mat Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 61.11x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..930 /organism="Melopsittacus undulatus" /mol_type="genomic DNA" /isolate="bMelUnd1" /db_xref="taxon:13146" /sex="female" /tissue_type="blood" /dev_stage="juvenile" /country="USA: New Mexico State University" /lat_lon="32.278282 N 106.74994 W" /collection_date="02-Nov-2018" /collected_by="Timothy Wright, Justin Apodaca" WGS JAAVWI010000001-JAAVWI010000930 // LOCUS JAAVWH010000000 330 rc DNA linear VRT 13-APR-2020 DEFINITION Melopsittacus undulatus isolate bMelUnd1, whole genome shotgun sequencing project. ACCESSION JAAVWH000000000 VERSION JAAVWH000000000.1 DBLINK BioProject: PRJNA561963 BioSample: SAMN12623090 KEYWORDS WGS. SOURCE Melopsittacus undulatus (budgerigar) ORGANISM Melopsittacus undulatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Psittaciformes; Psittaculidae; Melopsittacus. REFERENCE 1 (bases 1 to 330) AUTHORS Gedman,G., Mountcastle,J., Haase,B., Formenti,G., Wright,T., Apodaca,J., Pelan,S., Chow,W., Rhie,A., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Melopsittacus undulatus (budgerigar) genome, bMelUnd1, paternal haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 330) AUTHORS Gedman,G., Mountcastle,J., Haase,B., Formenti,G., Wright,T., Apodaca,J., Pelan,S., Chow,W., Rhie,A., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (23-MAR-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Melopsittacus undulatus whole genome shotgun (WGS) project has the project accession JAAVWH000000000. This version of the project (01) has the accession number JAAVWH010000000, and consists of sequences JAAVWH010000001-JAAVWH010000330. This assembly represents the paternal alternate haplotype of the diploid genome Melopsittacus undulatus. The principal haplotype sequences of the VGP trio assembly merged haplotype data are in WGS project JAAVWG000000000. The maternal alternate haploid sequences are in WGS project JAAVWI000000000. ##Genome-Assembly-Data-START## Assembly Date :: 30-AUG-2019 Assembly Method :: TrioCanu v. 1.8; purge_dups v. 1.0.0; Scaff 10x v. 4.1.0; Bionano solve v. solve 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow polishing and gap filling v. smrtlink_6.0.0.47841; Longranger Align v. 2.2.2; Freebayes v. 1.3.1; VGP assembly pipeline v. 1.6 Assembly Name :: bMelUnd1.pat Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 61.11x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..330 /organism="Melopsittacus undulatus" /mol_type="genomic DNA" /isolate="bMelUnd1" /db_xref="taxon:13146" /sex="female" /tissue_type="blood" /dev_stage="juvenile" /country="USA: New Mexico State University" /lat_lon="32.278282 N 106.74994 W" /collection_date="02-Nov-2018" /collected_by="Timothy Wright, Justin Apodaca" WGS JAAVWH010000001-JAAVWH010000330 // LOCUS JAAVWG010000000 865 rc DNA linear VRT 13-APR-2020 DEFINITION Melopsittacus undulatus isolate bMelUnd1, whole genome shotgun sequencing project. ACCESSION JAAVWG000000000 VERSION JAAVWG000000000.1 DBLINK BioProject: PRJNA612327 BioSample: SAMN12623090 KEYWORDS WGS. SOURCE Melopsittacus undulatus (budgerigar) ORGANISM Melopsittacus undulatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Psittaciformes; Psittaculidae; Melopsittacus. REFERENCE 1 (bases 1 to 865) AUTHORS Gedman,G., Mountcastle,J., Haase,B., Formenti,G., Wright,T., Apodaca,J., Pelan,S., Chow,W., Rhie,A., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Melopsittacus undulatus (budgerigar) genome, bMelUnd1, maternal haplotype with Z JOURNAL Unpublished REFERENCE 2 (bases 1 to 865) AUTHORS Gedman,G., Mountcastle,J., Haase,B., Formenti,G., Wright,T., Apodaca,J., Pelan,S., Chow,W., Rhie,A., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (23-MAR-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Melopsittacus undulatus whole genome shotgun (WGS) project has the project accession JAAVWG000000000. This version of the project (01) has the accession number JAAVWG010000000, and consists of sequences JAAVWG010000001-JAAVWG010000865. This assembly represents the principal haplotype of the diploid genome Melopsittacus undulatus. This is the VGP trio assembly merged haplotype data and includes the chromosomes from the female as well as the Z chromosome and the mitochondrion. The #alternate maternal and paternal haplotype sequences are in WGS projects JAAVWI000000000 and JAAVWH000000000 respectively. ##Genome-Assembly-Data-START## Assembly Date :: 24-FEB-2020 Assembly Method :: TrioCanu v. 1.8; purge_dups v. 1.0.0; Scaff 10x v. 4.1.0; Bionano solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow polishing and gap filling v. smrtlink_6.0.0.47841; Longranger Align v. 2.2.2; Freebayes v. 1.3.1; gEVAL manual curation v. 2020-02-24; VGP assembly pipeline v. 1.6 Assembly Name :: bMelUnd1.mat.Z Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 61.11x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..865 /organism="Melopsittacus undulatus" /mol_type="genomic DNA" /isolate="bMelUnd1" /db_xref="taxon:13146" /sex="female" /tissue_type="blood" /dev_stage="juvenile" /country="USA: New Mexico State University" /lat_lon="32.278282 N 106.74994 W" /collection_date="02-Nov-2018" /collected_by="Timothy Wright, Justin Apodaca" WGS JAAVWG010000001-JAAVWG010000865 WGS_SCAFLD CM022632-CM022664 // LOCUS JAAIYF010000000 4064 rc DNA linear VRT 27-MAR-2020 DEFINITION Petromyzon marinus isolate kPetMar1, whole genome shotgun sequencing project. ACCESSION JAAIYF000000000 VERSION JAAIYF000000000.1 DBLINK BioProject: PRJNA562012 BioSample: SAMN12629506 KEYWORDS WGS. SOURCE Petromyzon marinus (sea lamprey) ORGANISM Petromyzon marinus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Cyclostomata; Hyperoartia; Petromyzontiformes; Petromyzontidae; Petromyzon. REFERENCE 1 (bases 1 to 4064) AUTHORS Smith,J., Fedrigo,O., Timoshevskaya,N., Mountcastle,J., Haase,B., Balacco,J., Formenti,G., Pelan,S., Sims,Y., Howe,K., Muir,A. and Jarvis,E.D. TITLE Petromyzon marinus (Sea Lamprey) genome, kPetMar1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 4064) AUTHORS Smith,J., Fedrigo,O., Timoshevskaya,N., Mountcastle,J., Haase,B., Balacco,J., Formenti,G., Pelan,S., Sims,Y., Howe,K., Muir,A. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (18-FEB-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Petromyzon marinus whole genome shotgun (WGS) project has the project accession JAAIYF000000000. This version of the project (01) has the accession number JAAIYF010000000, and consists of sequences JAAIYF010000001-JAAIYF010004064. This assembly represents the alternate haplotype of the diploid genome Petromyzon marinus. The principal haplotype sequences are in WGS project JAAIYE000000000. ##Genome-Assembly-Data-START## Assembly Date :: 09-DEC-2019 Assembly Method :: FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_dups v. github ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. smrtlink_6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-12-09; VGP assembly pipeline individual v. 1.6 Assembly Name :: kPetMar1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 62.36x Sequencing Technology :: PacBio Sequel I CLR; llumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..4064 /organism="Petromyzon marinus" /mol_type="genomic DNA" /isolate="kPetMar1" /db_xref="taxon:7757" /sex="male" /tissue_type="sperm" /dev_stage="adult" /country="USA: Great Lakes Fisheries Commission" /lat_lon="42.2821 N 83.7485 W" /collection_date="12-Jun-2018" /collected_by="Jeramiah Smith" WGS JAAIYF010000001-JAAIYF010004064 // LOCUS JAAIYE010000000 1433 rc DNA linear VRT 27-MAR-2020 DEFINITION Petromyzon marinus isolate kPetMar1, whole genome shotgun sequencing project. ACCESSION JAAIYE000000000 VERSION JAAIYE000000000.1 DBLINK BioProject: PRJNA562011 BioSample: SAMN12629506 KEYWORDS WGS. SOURCE Petromyzon marinus (sea lamprey) ORGANISM Petromyzon marinus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Cyclostomata; Hyperoartia; Petromyzontiformes; Petromyzontidae; Petromyzon. REFERENCE 1 (bases 1 to 1433) AUTHORS Smith,J., Fedrigo,O., Timoshevskaya,N., Mountcastle,J., Haase,B., Balacco,J., Formenti,G., Pelan,S., Sims,Y., Howe,K., Muir,A. and Jarvis,E.D. TITLE Petromyzon marinus (Sea Lamprey) genome, kPetMar1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 1433) AUTHORS Smith,J., Fedrigo,O., Timoshevskaya,N., Mountcastle,J., Haase,B., Balacco,J., Formenti,G., Pelan,S., Sims,Y., Howe,K., Muir,A. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (18-FEB-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Petromyzon marinus whole genome shotgun (WGS) project has the project accession JAAIYE000000000. This version of the project (01) has the accession number JAAIYE010000000, and consists of sequences JAAIYE010000001-JAAIYE010001433. This assembly represents the principal haplotype of the diploid genome Petromyzon marinus and includes the chromosomes. The alternate haplotype sequences are in WGS project JAAIYF000000000. ##Genome-Assembly-Data-START## Assembly Date :: 09-DEC-2019 Assembly Method :: FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_dups v. github ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. smrtlink_6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-12-09; VGP assembly pipeline individual v. 1.6 Assembly Name :: kPetMar1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 62.36x Sequencing Technology :: PacBio Sequel I CLR; llumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1433 /organism="Petromyzon marinus" /mol_type="genomic DNA" /isolate="kPetMar1" /db_xref="taxon:7757" /sex="male" /tissue_type="sperm" /dev_stage="adult" /country="USA: Great Lakes Fisheries Commission" /lat_lon="42.2821 N 83.7485 W" /collection_date="12-Jun-2018" /collected_by="Jeramiah Smith" WGS JAAIYE010000001-JAAIYE010001433 WGS_SCAFLD CM021441-CM021525 // LOCUS JAAOMG010000000 1596 rc DNA linear ROD 27-MAR-2020 DEFINITION Arvicanthis niloticus isolate mArvNil1, whole genome shotgun sequencing project. ACCESSION JAAOMG000000000 VERSION JAAOMG000000000.1 DBLINK BioProject: PRJNA608735 BioSample: SAMN12611849 KEYWORDS WGS. SOURCE Arvicanthis niloticus (African grass rat) ORGANISM Arvicanthis niloticus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Arvicanthis. REFERENCE 1 (bases 1 to 1596) AUTHORS Bukhman,Y., Toh,H., Tracey,A., Chow,W., Mountcastle,J., Haase,B., Formenti,G., Rhie,A., Fedrigo,O., Jarvis,E.D., Stewart,R. and Thomson,J. TITLE Arvicanthis niloticus (Nile rat) genome, mArvNil1, paternal haplotype with X JOURNAL Unpublished REFERENCE 2 (bases 1 to 1596) AUTHORS Bukhman,Y., Toh,H., Tracey,A., Chow,W., Mountcastle,J., Haase,B., Formenti,G., Rhie,A., Fedrigo,O., Jarvis,E.D., Stewart,R. and Thomson,J. TITLE Direct Submission JOURNAL Submitted (09-MAR-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Arvicanthis niloticus whole genome shotgun (WGS) project has the project accession JAAOMG000000000. This version of the project (01) has the accession number JAAOMG010000000, and consists of sequences JAAOMG010000001-JAAOMG010001596. This assembly represents the principal haplotype of the diploid genome Arvicanthis niloticus. This is the trio assembly merged haplotype data. The alternate maternal and paternal haplotype sequences are in WGS projects JAAOME000000000 and JAAOMF000000000 respectively. ##Genome-Assembly-Data-START## Assembly Date :: 16-JAN-2020 Assembly Method :: TrioCanu v. 1.8; purge_dups v. 1.0.0; Scaff 10x v. 4.1.0; Bionano solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow polishing and gap filling v. smrtlink_6.0.0.47841; Freebayes v. 1.3.1; gEVAL manual curation v. 2020-01-16; VGP trio assembly pipeline v. 1.6 Assembly Name :: mArvNil1.pat.X Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 60.95x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1596 /organism="Arvicanthis niloticus" /mol_type="genomic DNA" /isolate="mArvNil1" /specimen_voucher="T564M" /db_xref="taxon:61156" /sex="male" /tissue_type="Spleen (genome), brain & testis (transcriptome)" /dev_stage="adult" /country="USA: Santa Barbara" /lat_lon="34.41938 N 119.69905 W" /collection_date="06-Mar-2019" /collected_by="Huishi Toh" WGS JAAOMG010000001-JAAOMG010001596 WGS_SCAFLD CM022251-CM022273 // LOCUS JAAOMF010000000 1740 rc DNA linear ROD 25-MAR-2020 DEFINITION Arvicanthis niloticus isolate mArvNil1, whole genome shotgun sequencing project. ACCESSION JAAOMF000000000 VERSION JAAOMF000000000.1 DBLINK BioProject: PRJNA561935 BioSample: SAMN12611849 KEYWORDS WGS. SOURCE Arvicanthis niloticus (African grass rat) ORGANISM Arvicanthis niloticus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Arvicanthis. REFERENCE 1 (bases 1 to 1740) AUTHORS Bukhman,Y., Toh,H., Tracey,A., Chow,W., Mountcastle,J., Haase,B., Formenti,G., Rhie,A., Fedrigo,O., Jarvis,E.D., Stewart,R. and Thomson,J. TITLE Arvicanthis niloticus (Nile rat) genome, mArvNil1, paternal haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 1740) AUTHORS Bukhman,Y., Toh,H., Tracey,A., Chow,W., Mountcastle,J., Haase,B., Formenti,G., Rhie,A., Fedrigo,O., Jarvis,E.D., Stewart,R. and Thomson,J. TITLE Direct Submission JOURNAL Submitted (09-MAR-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Arvicanthis niloticus whole genome shotgun (WGS) project has the project accession JAAOMF000000000. This version of the project (01) has the accession number JAAOMF010000000, and consists of sequences JAAOMF010000001-JAAOMF010001740. This assembly represents the paternal alternate haplotype of the diploid genome Arvicanthis niloticus. The principal haplotype sequences of the trio assembly merged haplotype data are in WGS project JAAOMG000000000. The maternal alternate haploid sequences are in WGS project JAAOME000000000. ##Genome-Assembly-Data-START## Assembly Method :: TrioCanu v. 1.8; purge_dups v. 1.0.0; Scaff 10x v. 4.1.0; Bionano solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow polishing and gap filling v. smrtlink_6.0.0.47841; Freebayes v. 1.3.1; VGP trio assembly pipeline v. 1.6 Assembly Name :: mArvNil1.pat Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 60.95x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1740 /organism="Arvicanthis niloticus" /mol_type="genomic DNA" /isolate="mArvNil1" /specimen_voucher="T564M" /db_xref="taxon:61156" /sex="male" /tissue_type="Spleen (genome), brain & testis (transcriptome)" /dev_stage="adult" /country="USA: Santa Barbara" /lat_lon="34.41938 N 119.69905 W" /collection_date="06-Mar-2019" /collected_by="Huishi Toh" WGS JAAOMF010000001-JAAOMF010001740 // LOCUS JAAOME010000000 1610 rc DNA linear ROD 25-MAR-2020 DEFINITION Arvicanthis niloticus isolate mArvNil1, whole genome shotgun sequencing project. ACCESSION JAAOME000000000 VERSION JAAOME000000000.1 DBLINK BioProject: PRJNA561936 BioSample: SAMN12611849 KEYWORDS WGS. SOURCE Arvicanthis niloticus (African grass rat) ORGANISM Arvicanthis niloticus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Arvicanthis. REFERENCE 1 (bases 1 to 1610) AUTHORS Bukhman,Y., Toh,H., Tracey,A., Chow,W., Mountcastle,J., Haase,B., Formenti,G., Rhie,A., Fedrigo,O., Jarvis,E.D., Stewart,R. and Thomson,J. TITLE Arvicanthis niloticus (Nile rat) genome, mArvNil1, maternal haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 1610) AUTHORS Bukhman,Y., Toh,H., Tracey,A., Chow,W., Mountcastle,J., Haase,B., Formenti,G., Rhie,A., Fedrigo,O., Jarvis,E.D., Stewart,R. and Thomson,J. TITLE Direct Submission JOURNAL Submitted (12-MAR-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Arvicanthis niloticus whole genome shotgun (WGS) project has the project accession JAAOME000000000. This version of the project (01) has the accession number JAAOME010000000, and consists of sequences JAAOME010000001-JAAOME010001610. This assembly represents the maternal alternate haplotype of the diploid genome Arvicanthis niloticus. The principal haplotype sequences of the trio assembly merged haplotype data are in WGS project JAAOMG000000000. The paternal alternate haploid sequences are in WGS project JAAOMF000000000. ##Genome-Assembly-Data-START## Assembly Date :: 03-SEP-2019 Assembly Method :: TrioCanu v. 1.8; purge_dups v. 1.0.0; Scaff 10x v. 4.1.0; Bionano solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow polishing and gap filling v. smrtlink_6.0.0.47841; Freebayes v. 1.3.1; VGP trio assembly pipeline v. 1.6 Assembly Name :: mArvNil1.mat Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 60.95x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1610 /organism="Arvicanthis niloticus" /mol_type="genomic DNA" /isolate="mArvNil1" /specimen_voucher="T564M" /db_xref="taxon:61156" /sex="male" /tissue_type="Spleen (genome), brain & testis (transcriptome)" /dev_stage="adult" /country="USA: Santa Barbara" /lat_lon="34.41938 N 119.69905 W" /collection_date="06-Mar-2019" /collected_by="Huishi Toh" WGS JAAOME010000001-JAAOME010001610 // LOCUS JAAOMC010000000 1166 rc DNA linear MAM 25-MAR-2020 DEFINITION Tursiops truncatus isolate mTurTru1, whole genome shotgun sequencing project. ACCESSION JAAOMC000000000 VERSION JAAOMC000000000.1 DBLINK BioProject: PRJNA561884 BioSample: SAMN12326775 KEYWORDS WGS. SOURCE Tursiops truncatus (common bottlenose dolphin) ORGANISM Tursiops truncatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Tursiops. REFERENCE 1 (bases 1 to 1166) AUTHORS Maloney,B., Clayton,L., Arnold,J., Hilger,N., Timp,W., Cavin,J., Collins,J., Chow,W., Rhie,A., Formenti,G., Fedrigo,O. and Jarvis,E.D. TITLE Tursiops truncatus (bottlenose dolphin) genome, mTurTru1, paternal haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 1166) AUTHORS Maloney,B., Clayton,L., Arnold,J., Hilger,N., Timp,W., Cavin,J., Collins,J., Chow,W., Rhie,A., Formenti,G., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (09-MAR-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Tursiops truncatus whole genome shotgun (WGS) project has the project accession JAAOMC000000000. This version of the project (01) has the accession number JAAOMC010000000, and consists of sequences JAAOMC010000001-JAAOMC010001166. This assembly represents the paternal alternate haplotype of the diploid genome Tursiops truncatus. The principal haplotype sequences of the trio assembly merged haplotype data are in WGS project JAAOMD000000000. The maternal alternate haploid sequences are in WGS project JAAOMB000000000#. ##Genome-Assembly-Data-START## Assembly Date :: 30-AUG-2019 Assembly Method :: TrioCanu v. 1.8; purge_dups v. 1.0.0; Scaff 10x v. 4.1.0; Bionano solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow polishing and gap filling v. smrtlink_6.0.0.47841; Freebayes 1.3.1 v. 1.3.1; VGP trio assembly pipeline v. 1.6 Assembly Name :: mTurTru1.pat Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 63.7x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1166 /organism="Tursiops truncatus" /mol_type="genomic DNA" /isolate="mTurTru1" /db_xref="taxon:9739" /sex="male" /tissue_type="spleen" /country="USA: Baltimore, Maryland" /lat_lon="39.2851 N 76.6083 W" /collection_date="11-Nov-2018" /collected_by="Leigh Clayton, Jill Arnold, Winston Timp, Norah Hilger" WGS JAAOMC010000001-JAAOMC010001166 // LOCUS JAAOMD010000000 362 rc DNA linear MAM 27-MAR-2020 DEFINITION Tursiops truncatus isolate mTurTru1, whole genome shotgun sequencing project. ACCESSION JAAOMD000000000 VERSION JAAOMD000000000.1 DBLINK BioProject: PRJNA608726 BioSample: SAMN12326775 KEYWORDS WGS. SOURCE Tursiops truncatus (common bottlenose dolphin) ORGANISM Tursiops truncatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Tursiops. REFERENCE 1 (bases 1 to 362) AUTHORS Maloney,B., Clayton,L., Arnold,J., Hilger,N., Timp,W., Cavin,J., Collins,J., Chow,W., Rhie,A., Formenti,G., Fedrigo,O., Magnasco,M. and Jarvis,E.D. TITLE Tursiops truncatus (bottlenose dolphin) genome, mTurTru1, maternal haplotype with Y JOURNAL Unpublished REFERENCE 2 (bases 1 to 362) AUTHORS Maloney,B., Clayton,L., Arnold,J., Hilger,N., Timp,W., Cavin,J., Collins,J., Chow,W., Rhie,A., Formenti,G., Fedrigo,O., Magnasco,M. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (09-MAR-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Tursiops truncatus whole genome shotgun (WGS) project has the project accession JAAOMD000000000. This version of the project (01) has the accession number JAAOMD010000000, and consists of sequences JAAOMD010000001-JAAOMD010000362. This assembly represents the principal haplotype of the diploid genome Tursiops truncatus. This is the trio assembly merged haplotype data. The alternate maternal and paternal haplotype sequences are in WGS projects JAAOMB000000000 and JAAOMC000000000 respectively. ##Genome-Assembly-Data-START## Assembly Date :: 15-JAN-2020 Assembly Method :: TrioCanu v. 1.8; purge_dups v. 1.0.0; Scaff 10x v. 4.1.0; Bionano solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow polishing and gap filling v. smrtlink_6.0.0.47841; Freebayes v. 1.3.1; gEVAL manual curation v. 2020-01-15; VGP trio assembly pipeline v. 1.6 Assembly Name :: mTurTru1.mat.Y Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 63.7x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..362 /organism="Tursiops truncatus" /mol_type="genomic DNA" /isolate="mTurTru1" /db_xref="taxon:9739" /sex="male" /tissue_type="spleen" /country="USA: Baltimore, Maryland" /lat_lon="39.2851 N 76.6083 W" /collection_date="11-Nov-2018" /collected_by="Leigh Clayton, Jill Arnold, Winston Timp, Norah Hilger" WGS JAAOMD010000001-JAAOMD010000362 WGS_SCAFLD CM022274-CM022296 // LOCUS JAAOMB010000000 985 rc DNA linear MAM 25-MAR-2020 DEFINITION Tursiops truncatus isolate mTurTru1, whole genome shotgun sequencing project. ACCESSION JAAOMB000000000 VERSION JAAOMB000000000.1 DBLINK BioProject: PRJNA561885 BioSample: SAMN12326775 KEYWORDS WGS. SOURCE Tursiops truncatus (common bottlenose dolphin) ORGANISM Tursiops truncatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Tursiops. REFERENCE 1 (bases 1 to 985) AUTHORS Maloney,B., Clayton,L., Arnold,J., Hilger,N., Timp,W., Cavin,J., Collins,J., Chow,W., Rhie,A., Formenti,G., Fedrigo,O. and Jarvis,E.D. TITLE Tursiops truncatus (bottlenose dolphin) genome, mTurTru1, maternal haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 985) AUTHORS Maloney,B., Clayton,L., Arnold,J., Hilger,N., Timp,W., Cavin,J., Collins,J., Chow,W., Rhie,A., Formenti,G., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (09-MAR-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Tursiops truncatus whole genome shotgun (WGS) project has the project accession JAAOMB000000000. This version of the project (01) has the accession number JAAOMB010000000, and consists of sequences JAAOMB010000001-JAAOMB010000985. This assembly represents the maternal alternate haplotype of the diploid genome Tursiops truncatus. The principal haplotype sequences of the trio assembly merged haplotype data are in WGS project JAAOMD000000000. The paternal alternate haploid sequences are in WGS project JAAOMC000000000. ##Genome-Assembly-Data-START## Assembly Date :: 30-AUG-2019 Assembly Method :: TrioCanu v. 1.8; purge_dups v. 1.0.0; Scaff 10x v. 4.1.0; Bionano solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow polishing and gap filling v. smrtlink_6.0.0.47841; Freebayes v. 1.3.1; VGP trio assembly pipeline v. 1.6 Assembly Name :: mTurTru1.mat Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 63.7x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..985 /organism="Tursiops truncatus" /mol_type="genomic DNA" /isolate="mTurTru1" /db_xref="taxon:9739" /sex="male" /tissue_type="spleen" /country="USA: Baltimore, Maryland" /lat_lon="39.2851 N 76.6083 W" /collection_date="11-Nov-2018" /collected_by="Leigh Clayton, Jill Arnold, Winston Timp, Norah Hilger" WGS JAAOMB010000001-JAAOMB010000985 // LOCUS JAALXQ010000000 216 rc DNA linear PRI 10-MAR-2020 DEFINITION Callithrix jacchus isolate mCalJac1, whole genome shotgun sequencing project. ACCESSION JAALXQ000000000 VERSION JAALXQ000000000.1 DBLINK BioProject: PRJNA558086 BioSample: SAMN12368443 KEYWORDS WGS. SOURCE Callithrix jacchus (white-tufted-ear marmoset) ORGANISM Callithrix jacchus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix. REFERENCE 1 (bases 1 to 216) AUTHORS Marcus,S., Zhou,Y., Formenti,G., Mountcastle,J., Haase,B., Balacco,J., Fabiszak,M., Rhie,A., Phillippy,A., Wood,J., Chow,W., Yang,C., Howe,K., Fedrigo,O., Freiwald,W., Jarvis,E.D. and Zhang,G. TITLE Callithrix jacchus (common marmoset) genome, mCalJac1, maternal haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 216) AUTHORS Marcus,S., Zhou,Y., Formenti,G., Mountcastle,J., Haase,B., Balacco,J., Fabiszak,M., Rhie,A., Phillippy,A., Wood,J., Chow,W., Yang,C., Howe,K., Fedrigo,O., Freiwald,W., Jarvis,E.D. and Zhang,G. TITLE Direct Submission JOURNAL Submitted (25-FEB-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Callithrix jacchus whole genome shotgun (WGS) project has the project accession JAALXQ000000000. This version of the project (01) has the accession number JAALXQ010000000, and consists of sequences JAALXQ010000001-JAALXQ010000216. This assembly represents the maternal alternate haplotype of the diploid genome of Callithrix jacchus. The principal haplotype sequences of the VGP trio assembly merged haplotype data are in WGS project JAALXP000000000. The paternal alternate haploid sequences are in WGS project JAALXR000000000. ##Genome-Assembly-Data-START## Assembly Date :: 11-DEC-2019 Assembly Method :: TrioCanu v. 1.8; purge_dups v. 1.0.0; Scaff 10x v. 4.1.0; Bionano solve v. solve 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow polishing and gap filling v. smrtlink_6.0.0.47841; Longranger Align v. 2.2.2; Freebayes v. 1.3.1; gEVAL manual curation v. 2019-12-11; Zhang manual curation v. 2020-02-12; VGP assembly pipeline v. 1.6 Assembly Name :: mCalJac1.mat Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 63.44x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..216 /organism="Callithrix jacchus" /mol_type="genomic DNA" /isolate="mCalJac1" /db_xref="taxon:9483" /sex="male" /tissue_type="muscle" /dev_stage="juvenile" /country="USA: New York" /lat_lon="40.762676 N 73.955541 W" /collection_date="12-Jun-2018" /collected_by="Stephanie Marcus and Margaret Fabiszak" WGS JAALXQ010000001-JAALXQ010000216 WGS_SCAFLD CM021859-CM021881 // LOCUS JAANDF010000000 12133 rc DNA linear MAM 09-MAR-2020 DEFINITION Trichosurus vulpecula isolate mTriVul1, whole genome shotgun sequencing project. ACCESSION JAANDF000000000 VERSION JAANDF000000000.1 DBLINK BioProject: PRJNA562013 BioSample: SAMN12629507 KEYWORDS WGS. SOURCE Trichosurus vulpecula (common brushtail) ORGANISM Trichosurus vulpecula Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Diprotodontia; Phalangeridae; Trichosurus. REFERENCE 1 (bases 1 to 12133) AUTHORS Hore,T., Laird,M., Gemmell,N., Wogan,S., Mountcastle,J., Haase,B., Collins,J., Chow,W., Driller,M., Formenti,G., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Trichosurus vulpecula (Brushtail possum) genome, mTriVul1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 12133) AUTHORS Hore,T., Laird,M., Gemmell,N., Wogan,S., Mountcastle,J., Haase,B., Collins,J., Chow,W., Driller,M., Formenti,G., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (10-FEB-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Trichosurus vulpecula whole genome shotgun (WGS) project has the project accession JAANDF000000000. This version of the project (01) has the accession number JAANDF010000000, and consists of sequences JAANDF010000001-JAANDF010012133. This assembly represents the alternate haplotype of the diploid genome Trichosurus vulpecula. The principal haplotype sequences are in WGS project JAANDE000000000. ##Genome-Assembly-Data-START## Assembly Date :: 15-JAN-2020 Assembly Method :: FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_haplotigs v. v1.0.3+ 1.Nov.2018; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2020-01-15; VGP assembly pipeline v. 1.5 Assembly Name :: mTriVul1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 60.73x Sequencing Technology :: PacBio Sequel; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..12133 /organism="Trichosurus vulpecula" /mol_type="genomic DNA" /isolate="mTriVul1" /db_xref="taxon:9337" /sex="male" /tissue_type="muscle (forearm)" /dev_stage="pouch-young" /country="New Zealand: Sandymount, Otago Peninsula (Trap 21)" /lat_lon="45.891340 S 170.657015 E" /collection_date="17-May-2018" /collected_by="Tim Hore, Mel Laird, Sol Wogan" WGS JAANDF010000001-JAANDF010012133 // LOCUS JAANDE010000000 212 rc DNA linear MAM 09-MAR-2020 DEFINITION Trichosurus vulpecula isolate mTriVul1, whole genome shotgun sequencing project. ACCESSION JAANDE000000000 VERSION JAANDE000000000.1 DBLINK BioProject: PRJNA562014 BioSample: SAMN12629507 KEYWORDS WGS. SOURCE Trichosurus vulpecula (common brushtail) ORGANISM Trichosurus vulpecula Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Diprotodontia; Phalangeridae; Trichosurus. REFERENCE 1 (bases 1 to 212) AUTHORS Hore,T., Laird,M., Gemmell,N., Wogan,S., Mountcastle,J., Haase,B., Collins,J., Chow,W., Driller,M., Formenti,G., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Trichosurus vulpecula (Brushtail possum) genome, mTriVul1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 212) AUTHORS Hore,T., Laird,M., Gemmell,N., Wogan,S., Mountcastle,J., Haase,B., Collins,J., Chow,W., Driller,M., Formenti,G., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (10-FEB-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Trichosurus vulpecula whole genome shotgun (WGS) project has the project accession JAANDE000000000. This version of the project (01) has the accession number JAANDE010000000, and consists of sequences JAANDE010000001-JAANDE010000212. This assembly represents the principal haplotype of the diploid genome Trichosurus vulpecula and includes the chromosomes. The alternate haplotype sequences are in WGS project JAANDF000000000. ##Genome-Assembly-Data-START## Assembly Date :: 15-JAN-2020 Assembly Method :: FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_haplotigs v. v1.0.3+ 1.Nov.2018; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2020-01-15; VGP assembly pipeline v. 1.5 Assembly Name :: mTriVul1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 60.73x Sequencing Technology :: PacBio Sequel; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..212 /organism="Trichosurus vulpecula" /mol_type="genomic DNA" /isolate="mTriVul1" /db_xref="taxon:9337" /sex="male" /tissue_type="muscle (forearm)" /dev_stage="pouch-young" /country="New Zealand: Sandymount, Otago Peninsula (Trap 21)" /lat_lon="45.891340 S 170.657015 E" /collection_date="17-May-2018" /collected_by="Tim Hore, Mel Laird, Sol Wogan" WGS JAANDE010000001-JAANDE010000212 // LOCUS JAAIYD010000000 971 rc DNA linear VRT 24-FEB-2020 DEFINITION Balearica regulorum gibbericeps isolate bBalReg1, whole genome shotgun sequencing project. ACCESSION JAAIYD000000000 VERSION JAAIYD000000000.1 DBLINK BioProject: PRJNA561891 BioSample: SAMN12615749 KEYWORDS WGS. SOURCE Balearica regulorum gibbericeps (East African grey crowned-crane) ORGANISM Balearica regulorum gibbericeps Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Gruidae; Balearica. REFERENCE 1 (bases 1 to 971) AUTHORS Gilbert,T., Formenti,G., Bertelsen,M., Collins,J., Chow,W., Mountcastle,J., Haase,B., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Balearica regulorum gibbericeps (Grey crowned-crane) genome, bBalReg1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 971) AUTHORS Gilbert,T., Formenti,G., Bertelsen,M., Collins,J., Chow,W., Mountcastle,J., Haase,B., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (18-FEB-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Balearica regulorum gibbericeps whole genome shotgun (WGS) project has the project accession JAAIYD000000000. This version of the project (01) has the accession number JAAIYD010000000, and consists of sequences JAAIYD010000001-JAAIYD010000971. This assembly represents the alternate haplotype of the diploid genome Balearica regulorum gibbericeps. The principal haplotype sequences are in WGS project JAAIYC000000000. ##Genome-Assembly-Data-START## Assembly Date :: 04-DEC-2019 Assembly Method :: FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_dups v. github ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. SMRTLink7.0.1; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-12-04; VGP assembly pipeline individual v. 1.6 Assembly Name :: bBalReg1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 59.56x Sequencing Technology :: PacBio Sequel I CLR; llumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..971 /organism="Balearica regulorum gibbericeps" /mol_type="genomic DNA" /isolate="bBalReg1" /sub_species="gibbericeps" /db_xref="taxon:100784" /sex="female" /tissue_type="blood" /dev_stage="adult" /country="Denmark: Copenhagen Zoo" /lat_lon="55.67278 N 12.52139 E" /collection_date="2008" /collected_by="Mads Bertelsen, Tom Gilbert" WGS JAAIYD010000001-JAAIYD010000971 // LOCUS JAAIYS010000000 3813 rc DNA linear VRT 24-FEB-2020 DEFINITION Esox lucius isolate fEsoLuc1, whole genome shotgun sequencing project. ACCESSION JAAIYS000000000 VERSION JAAIYS000000000.1 DBLINK BioProject: PRJNA561978 BioSample: SAMN12623624 KEYWORDS WGS. SOURCE Esox lucius (northern pike) ORGANISM Esox lucius Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox. REFERENCE 1 (bases 1 to 3813) AUTHORS Myers,G., Karagic,N., Meyer,A., Pippel,M., Reichard,M., Winkler,S., Tracey,A., Sims,Y., Howe,K., Rhie,A., Formenti,G., Durbin,R., Fedrigo,O. and Jarvis,E.D. TITLE Esox lucius (northern pike) genome, fEsoLuc1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 3813) AUTHORS Myers,G., Karagic,N., Meyer,A., Pippel,M., Reichard,M., Winkler,S., Tracey,A., Sims,Y., Howe,K., Rhie,A., Formenti,G., Durbin,R., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (18-FEB-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Esox lucius whole genome shotgun (WGS) project has the project accession JAAIYS000000000. This version of the project (01) has the accession number JAAIYS010000000, and consists of sequences JAAIYS010000001-JAAIYS010003813. This assembly represents the alternate haplotype of the diploid genome Esox lucius. The principal haplotype sequences are in WGS project JAAIYR000000000. ##Genome-Assembly-Data-START## Assembly Date :: 10-JAN-2020 Assembly Method :: FALCON DNANexus v. 1.9.0; FALCON-Unzip DNANexus v. 1.0.6; purge_haplotigs v. v1.0.3+ 1.Nov.2018; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.4; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 7.0.1; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2020-01-10; VGP assembly pipeline 1.5 v. 1.5 Assembly Name :: fEsoLuc1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 1.0x Sequencing Technology :: PacBio Sequel; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..3813 /organism="Esox lucius" /mol_type="genomic DNA" /isolate="fEsoLuc1" /db_xref="taxon:8010" /tissue_type="liver, spleen" /dev_stage="adult" /country="Czech Republic: Jihlava River, Danube basin" /lat_lon="49.218 N 16.717 E" /collection_date="29-Nov-2018" /collected_by="Martin Reichard" WGS JAAIYS010000001-JAAIYS010003813 // LOCUS JAAIYC010000000 105 rc DNA linear VRT 24-FEB-2020 DEFINITION Balearica regulorum gibbericeps isolate bBalReg1, whole genome shotgun sequencing project. ACCESSION JAAIYC000000000 VERSION JAAIYC000000000.1 DBLINK BioProject: PRJNA561890 BioSample: SAMN12615749 KEYWORDS WGS. SOURCE Balearica regulorum gibbericeps (East African grey crowned-crane) ORGANISM Balearica regulorum gibbericeps Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Gruidae; Balearica. REFERENCE 1 (bases 1 to 105) AUTHORS Gilbert,T., Formenti,G., Bertelsen,M., Collins,J., Chow,W., Mountcastle,J., Haase,B., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Balearica regulorum gibbericeps (Grey crowned-crane) genome, bBalReg1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 105) AUTHORS Gilbert,T., Formenti,G., Bertelsen,M., Collins,J., Chow,W., Mountcastle,J., Haase,B., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (18-FEB-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Balearica regulorum gibbericeps whole genome shotgun (WGS) project has the project accession JAAIYC000000000. This version of the project (01) has the accession number JAAIYC010000000, and consists of sequences JAAIYC010000001-JAAIYC010000105. This assembly represents the principal haplotype of the diploid genome Balearica regulorum gibbericeps and includes the chromosomes. The alternate haplotype sequences are in WGS project JAAIYD000000000. ##Genome-Assembly-Data-START## Assembly Date :: 04-DEC-2019 Assembly Method :: FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_dups v. github ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. SMRTLink7.0.1; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-12-04; VGP assembly pipeline individual v. 1.6 Assembly Name :: bBalReg1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 59.56x Sequencing Technology :: PacBio Sequel I CLR; llumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..105 /organism="Balearica regulorum gibbericeps" /mol_type="genomic DNA" /isolate="bBalReg1" /sub_species="gibbericeps" /db_xref="taxon:100784" /sex="female" /tissue_type="blood" /dev_stage="adult" /country="Denmark: Copenhagen Zoo" /lat_lon="55.67278 N 12.52139 E" /collection_date="2008" /collected_by="Mads Bertelsen, Tom Gilbert" WGS JAAIYC010000001-JAAIYC010000105 // LOCUS CADCXF010000000 3149 rc DNA linear INV 14-FEB-2020 DEFINITION Maniola hyperantus, whole genome shotgun sequencing project. ACCESSION CADCXF000000000 VERSION CADCXF000000000.1 DBLINK BioProject: PRJEB36755 BioSample: SAMEA994723 KEYWORDS WGS. SOURCE Maniola hyperantus (ringlet) ORGANISM Maniola hyperantus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Satyrinae; Satyrini; Maniolina; Maniola; Aphantopus. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (12-FEB-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Maniola hyperantus whole genome shotgun (WGS) project has the project accession CADCXF000000000. This version of the project (01) has the accession number CADCXF010000000, and consists of sequences CADCXF010000001-CADCXF010003149. The assembly iAphHyp1.1 is based on 50x PacBio data, 61x 10X Genomics Chromium data, and 81x Arima Hi-C data from a separate individual iAphHyp4 generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with purge_dups, 10X based scaffolding with scaff10x, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..3149 /organism="Maniola hyperantus" /mol_type="genomic DNA" /db_xref="taxon:2795564" WGS CADCXF010000001-CADCXF010003149 // LOCUS JAAGWS010000000 21992 rc DNA linear VRT 14-FEB-2020 DEFINITION Amblyraja radiata isolate CabotCenter1, whole genome shotgun sequencing project. ACCESSION JAAGWS000000000 VERSION JAAGWS000000000.1 DBLINK BioProject: PRJNA591368 BioSample: SAMN09948523 KEYWORDS WGS. SOURCE Amblyraja radiata (thorny skate) ORGANISM Amblyraja radiata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Batoidea; Rajiformes; Rajidae; Amblyraja. REFERENCE 1 (bases 1 to 21992) AUTHORS Naylor,G., Rhie,A., Kneebone,J., Denton,J., Corrigan,S., Johnston,S., Mountcastle,J., Haase,B., Formenti,G., Tracey,A., Sims,Y., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Amblyraja radiata (thorny skate) genome, sAmbRad1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 21992) AUTHORS Naylor,G., Rhie,A., Kneebone,J., Denton,J., Corrigan,S., Johnston,S., Mountcastle,J., Haase,B., Formenti,G., Tracey,A., Sims,Y., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (07-FEB-2020) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Amblyraja radiata whole genome shotgun (WGS) project has the project accession JAAGWS000000000. This version of the project (01) has the accession number JAAGWS010000000, and consists of sequences JAAGWS010000001-JAAGWS010021992. This assembly represents the alternate haplotype of the diploid genome Amblyraja radiata. The principal haplotype sequences are in WGS project JAAGWR000000000. ##Genome-Assembly-Data-START## Assembly Date :: 13-JAN-2020 Assembly Method :: Canu v. 1.7; purge_haplotigs v. bitbucket 7.10.2018; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.3; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 5.1.0.26412; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; purge_dups v. ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b; gEVAL manual curation v. 2020-01-13; VGP assembly pipeline v. 1.6b Assembly Name :: sAmbRad1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 128.24x Sequencing Technology :: PacBio Sequel; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..21992 /organism="Amblyraja radiata" /mol_type="genomic DNA" /isolate="CabotCenter1" /db_xref="taxon:386614" /sex="male" /tissue_type="testis, liver" /country="USA: Gulf of Main" /lat_lon="43.1336 N 68.3266 W" /collection_date="2017-09-18" /collected_by="Jeff Kneebone" WGS JAAGWS010000001-JAAGWS010021992 // LOCUS CACVBM020000000 1940 rc DNA linear PLN 18-JAN-2020 DEFINITION Microthlaspi erraticum, whole genome shotgun sequencing project. ACCESSION CACVBM000000000 VERSION CACVBM000000000.2 DBLINK BioProject: PRJEB35998 BioSample: SAMEA6449025 Sequence Read Archive: ERR3809466 KEYWORDS WGS. SOURCE Microthlaspi erraticum ORGANISM Microthlaspi erraticum Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Coluteocarpeae; Microthlaspi. REFERENCE 1 AUTHORS Mishra,B. TITLE Direct Submission JOURNAL Submitted (13-JAN-2020) Senckenberg Biodiversity and Climate Research Center, Frankfurt am Main, AG Thines, Georg-Voigt-Strasse 14-16, Frankfurt am Main, Hessen, Germany REFERENCE 2 AUTHORS Mishra,B. TITLE Direct Submission JOURNAL Submitted (14-JAN-2020) Senckenberg Biodiversity and Climate Research Center, Frankfurt am Main, AG Thines, Georg-Voigt-Strasse 14-16, Frankfurt am Main, Hessen, Germany COMMENT On Feb 13, 2020 this sequence version replaced CACVBM000000000.1. The Microthlaspi erraticum whole genome shotgun (WGS) project has the project accession CACVBM000000000. This version of the project (02) has the accession number CACVBM020000000, and consists of sequences CACVBM020000001-CACVBM020001940. FEATURES Location/Qualifiers source 1..1940 /organism="Microthlaspi erraticum" /mol_type="genomic DNA" /db_xref="taxon:1685480" WGS CACVBM020000001-CACVBM020001940 // LOCUS CABPRM030000000 128 rc DNA linear INV 18-JAN-2020 DEFINITION Asterias rubens, whole genome shotgun sequencing project. ACCESSION CABPRM000000000 VERSION CABPRM000000000.3 DBLINK BioProject: PRJEB33974 BioSample: SAMEA994741 KEYWORDS WGS. SOURCE Asterias rubens (European starfish) ORGANISM Asterias rubens Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Asterozoa; Asteroidea; Forcipulatacea; Forcipulatida; Asteriidae; Asterias. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (12-AUG-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom REFERENCE 2 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (16-JAN-2020) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT On Feb 12, 2020 this sequence version replaced CABPRM000000000.2. The Asterias rubens whole genome shotgun (WGS) project has the project accession CABPRM000000000. This version of the project (03) has the accession number CABPRM030000000, and consists of sequences CABPRM030000001-CABPRM030000128. The assembly eAstRub1.3 is based on 103x PacBio data, 150x Illumina data, and 126x Dovetail Hi-C data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with Purge Haplotigs, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..128 /organism="Asterias rubens" /mol_type="genomic DNA" /db_xref="taxon:7604" WGS CABPRM030000001-CABPRM030000128 // LOCUS WMAJ01000000 13981 rc DNA linear MAM 30-JAN-2020 DEFINITION Lontra canadensis isolate GAN:19392208, whole genome shotgun sequencing project. ACCESSION WMAJ00000000 VERSION WMAJ00000000.1 DBLINK BioProject: PRJNA578111 BioSample: SAMN13049247 KEYWORDS WGS. SOURCE Lontra canadensis (Northern American river otter) ORGANISM Lontra canadensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Mustelidae; Lutrinae; Lontra. REFERENCE 1 (bases 1 to 13981) AUTHORS Culibrk,L., Black,S., Leelakumari,S., Tse,K., Cheng,D., Chuah,E., Kirk,H., Pandoh,P., Troussard,A., Zhao,Y., Mungall,A., Moore,R., Marra,M.A., Whiteside,D. and Jones,S.J.M. TITLE The genome of the North American River Otter (Lontra canadensis) JOURNAL Unpublished REFERENCE 2 (bases 1 to 13981) AUTHORS Culibrk,L., Black,S., Leelakumari,S., Tse,K., Cheng,D., Chuah,E., Kirk,H., Pandoh,P., Troussard,A., Zhao,Y., Mungall,A., Moore,R., Marra,M.A., Whiteside,D. and Jones,S.J.M. TITLE Direct Submission JOURNAL Submitted (07-NOV-2019) Canada's Michael Smith Genome Sciences Centre, BC Cancer, 570 7th Ave, Vancouver, British Columbia V5Z 4S6, Canada COMMENT The Lontra canadensis whole genome shotgun (WGS) project has the project accession WMAJ00000000. This version of the project (01) has the accession number WMAJ01000000, and consists of sequences WMAJ01000001-WMAJ01013981. ##Genome-Assembly-Data-START## Assembly Date :: NOV-2019 Assembly Method :: Supernova v. 2.1.1 Assembly Name :: GSC_riverotter_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 40.0x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..13981 /organism="Lontra canadensis" /mol_type="genomic DNA" /isolate="GAN:19392208" /db_xref="taxon:76717" /sex="female" /tissue_type="blood" /dev_stage="adult" WGS WMAJ01000001-WMAJ01013981 WGS_SCAFLD ML974370-ML975148 // LOCUS CACTIF010000000 224 rc DNA linear VRT 05-JAN-2020 DEFINITION Acipenser ruthenus, whole genome shotgun sequencing project. ACCESSION CACTIF000000000 VERSION CACTIF000000000.1 DBLINK BioProject: PRJEB35913 BioSample: SAMEA5572864 KEYWORDS WGS. SOURCE Acipenser ruthenus (sterlet) ORGANISM Acipenser ruthenus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (19-DEC-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Acipenser ruthenus whole genome shotgun (WGS) project has the project accession CACTIF000000000. This version of the project (01) has the accession number CACTIF010000000, and consists of sequences CACTIF010000001-CACTIF010000224. The assembly fAciRut3.1 is based on 149x PacBio Sequel II data, 64x 10X Genomics Chromium data, BioNano data and 72x Dovetail Hi-C data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: segregation of PacBio reads representing the two haplotypes using trioCanu and k-mers from the Illumina-sequenced parents (maternal: SAMEA5572860, and paternal: SAMEA5572861), separate assembly of each haplotype using Falcon, polishing with Arrow from the binned reads, retained duplication removal with purge_dups, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, further Arrow polishing, and two rounds of FreeBayes Illumina polishing. Finally, the assembly was analysed and manually improved using gEVAL. Due to the partial tetraploid and duplicated nature of this genome, the assignment of scaffolds to chromosome level was ambiguous and therefore omitted. Future updates will address this. FEATURES Location/Qualifiers source 1..224 /organism="Acipenser ruthenus" /mol_type="genomic DNA" /db_xref="taxon:7906" WGS CACTIF010000001-CACTIF010000224 // LOCUS CACTIG010000000 245 rc DNA linear VRT 05-JAN-2020 DEFINITION Acipenser ruthenus, whole genome shotgun sequencing project. ACCESSION CACTIG000000000 VERSION CACTIG000000000.1 DBLINK BioProject: PRJEB35912 BioSample: SAMEA5572864 KEYWORDS WGS. SOURCE Acipenser ruthenus (sterlet) ORGANISM Acipenser ruthenus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (19-DEC-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Acipenser ruthenus whole genome shotgun (WGS) project has the project accession CACTIG000000000. This version of the project (01) has the accession number CACTIG010000000, and consists of sequences CACTIG010000001-CACTIG010000245. The assembly fAciRut3.1 is based on 149x PacBio Sequel II data, 64x 10X Genomics Chromium data, BioNano data and 72x Dovetail Hi-C data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: segregation of PacBio reads representing the two haplotypes using trioCanu and k-mers from the Illumina-sequenced parents (maternal: SAMEA5572860, and paternal: SAMEA5572861), separate assembly of each haplotype using Falcon, polishing with Arrow from the binned reads, retained duplication removal with purge_dups, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, further Arrow polishing, and two rounds of FreeBayes Illumina polishing. Finally, the assembly was analysed and manually improved using gEVAL. Due to the partial tetraploid and duplicated nature of this genome, the assignment of scaffolds to chromosome level was ambiguous and therefore omitted. Future updates will address this. FEATURES Location/Qualifiers source 1..245 /organism="Acipenser ruthenus" /mol_type="genomic DNA" /db_xref="taxon:7906" WGS CACTIG010000001-CACTIG010000245 // LOCUS WNMD01000000 4269 rc DNA linear VRT 03-JAN-2020 DEFINITION Chiroxiphia lanceolata isolate bChiLan1, whole genome shotgun sequencing project. ACCESSION WNMD00000000 VERSION WNMD00000000.1 DBLINK BioProject: PRJNA561944 BioSample: SAMN12620979 KEYWORDS WGS. SOURCE Chiroxiphia lanceolata (lance-tailed manakin) ORGANISM Chiroxiphia lanceolata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Pipridae; Chiroxiphia. REFERENCE 1 (bases 1 to 4269) AUTHORS Duval,E.H., Balakrishan,C.N., Baldwin,M.W., Frandsen,P.B., Fusani,L., Fuxjager,M.J., Lim,H.C., Pfenning,A.R., Mello,C.V., Schlinger,B.A., Wirthlin,M., Sims,Y., Wood,J., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Chiroxiphia lanceolata (Lanced-tailed manakin) genome, bChiLan1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 4269) AUTHORS Duval,E.H., Balakrishan,C.N., Baldwin,M.W., Frandsen,P.B., Fusani,L., Fuxjager,M.J., Lim,H.C., Pfenning,A.R., Mello,C.V., Schlinger,B.A., Wirthlin,M., Sims,Y., Wood,J., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (22-NOV-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Chiroxiphia lanceolata whole genome shotgun (WGS) project has the project accession WNMD00000000. This version of the project (01) has the accession number WNMD01000000, and consists of sequences WNMD01000001-WNMD01004269. This assembly represents the alternate haplotype of the diploid genome Chiroxiphia lanceolata. The principal haplotype sequences are in WGS project WNMC00000000. ##Genome-Assembly-Data-START## Assembly Date :: 08-OCT-2019 Assembly Method :: FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_haplotigs v. v1.0.3+ 1.Nov.2018; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-10-08; VGP assembly pipeline individual v. 1.5 Assembly Name :: bChiLan1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 67.75x Sequencing Technology :: PacBio Sequel I CLR; llumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..4269 /organism="Chiroxiphia lanceolata" /mol_type="genomic DNA" /isolate="bChiLan1" /db_xref="taxon:296741" /sex="female" /tissue_type="isolated red blood cells" /dev_stage="adult" /country="Panama: Isla Boca Btava" /lat_lon="8.2166658 N 82.2666656 W" /collection_date="14-Apr-2017" /collected_by="Emily DuVal" WGS WNMD01000001-WNMD01004269 // LOCUS WNLZ01000000 3327 rc DNA linear MAM 03-JAN-2020 DEFINITION Mustela erminea isolate mMusErm1, whole genome shotgun sequencing project. ACCESSION WNLZ00000000 VERSION WNLZ00000000.1 DBLINK BioProject: PRJNA561930 BioSample: SAMN12611999 KEYWORDS WGS. SOURCE Mustela erminea (ermine) ORGANISM Mustela erminea Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Mustelidae; Mustelinae; Mustela. REFERENCE 1 (bases 1 to 3327) AUTHORS Veale,A., Rhie,A., Fedrigo,O., Formenti,G., Sims,Y., Phillippy,A., Jarvis,E.D. and Collins,J. TITLE Mustela erminea (stoat), mMusErm1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 3327) AUTHORS Veale,A., Rhie,A., Fedrigo,O., Formenti,G., Sims,Y., Phillippy,A., Jarvis,E.D. and Collins,J. TITLE Direct Submission JOURNAL Submitted (17-NOV-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Mustela erminea whole genome shotgun (WGS) project has the project accession WNLZ00000000. This version of the project (01) has the accession number WNLZ01000000, and consists of sequences WNLZ01000001-WNLZ01003327. This assembly represents the alternate haplotype of the diploid genome Mustela erminea. The principal haplotype sequences are in WGS project WNLY00000000. ##Genome-Assembly-Data-START## Assembly Date :: 17-OCT-2019 Assembly Method :: FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_dups v. 1; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-10-17; VGP assembly pipeline individual v. 1.6 Assembly Name :: mMusErm1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 62.86x Sequencing Technology :: PacBio Sequel; llumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..3327 /organism="Mustela erminea" /mol_type="genomic DNA" /isolate="mMusErm1" /db_xref="taxon:36723" /sex="male" /tissue_type="spleen (genome), liver, muscle, kidney" /dev_stage="adult" /country="New Zealand: Coromandel" /lat_lon="37.304717 S 175.755071 E" /collected_by="Andrew Veale, Tim Cruickshank" WGS WNLZ01000001-WNLZ01003327 // LOCUS WNMB01000000 2799 rc DNA linear VRT 03-JAN-2020 DEFINITION Periophthalmus magnuspinnatus isolate fPerMag1, whole genome shotgun sequencing project. ACCESSION WNMB00000000 VERSION WNMB00000000.1 DBLINK BioProject: PRJNA561999 BioSample: SAMN12629500 KEYWORDS WGS. SOURCE Periophthalmus magnuspinnatus ORGANISM Periophthalmus magnuspinnatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Gobiaria; Gobiiformes; Gobioidei; Gobiidae; Oxudercinae; Periophthalmus. REFERENCE 1 (bases 1 to 2799) AUTHORS Lee,C., Uliano Da Silva,M., Rhie,A., Fedrigo,O., Formenti,G., Mountcastle,J., Tracey,A., Sims,Y., Kim,J., Ko,B.J., Kim,Y.W., Nam,B., No,E.S., Kim,J.K., Bae,S.E., Venkatesh,B., Mccarthy,S., Phillippy,A., Durbin,R., Myers,E., Jarvis,E.D. and Kim,H. TITLE Periophthalmus magnuspinnatus (Korean giant-fin mudskipper) genome, fPerMag1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 2799) AUTHORS Lee,C., Uliano Da Silva,M., Rhie,A., Fedrigo,O., Formenti,G., Mountcastle,J., Tracey,A., Sims,Y., Kim,J., Ko,B.J., Kim,Y.W., Nam,B., No,E.S., Kim,J.K., Bae,S.E., Venkatesh,B., Mccarthy,S., Phillippy,A., Durbin,R., Myers,E., Jarvis,E.D. and Kim,H. TITLE Direct Submission JOURNAL Submitted (18-NOV-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Periophthalmus magnuspinnatus whole genome shotgun (WGS) project has the project accession WNMB00000000. This version of the project (01) has the accession number WNMB01000000, and consists of sequences WNMB01000001-WNMB01002799. This assembly represents the alternate haplotype of the diploid genome Periophthalmus magnuspinnatus. The principal haplotype sequences are in WGS project WNMA00000000. ##Genome-Assembly-Data-START## Assembly Date :: 11-OCT-2019 Assembly Method :: FALCON v. 2018.31.08-03.06; FALCON-Unzip v. 6.0.0.47841; purge_dups v. 51544-08-31; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-10-11; VGP assembly pipeline individual v. 1.6 Assembly Name :: fPerMag1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 69.53x Sequencing Technology :: PacBio Sequel I CLR; llumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..2799 /organism="Periophthalmus magnuspinnatus" /mol_type="genomic DNA" /isolate="fPerMag1" /db_xref="taxon:409849" /sex="female" /tissue_type="muscle and gills" /dev_stage="adult" /country="South Korea: Yellow Sea; JF4H+5P Ganghwa-gun, Incheon" /lat_lon="37.605444 N 126.479306 E" /collection_date="16-Oct-2018" /collected_by="Chul Lee, Joowan Kim, Jingu Kim" WGS WNMB01000001-WNMB01002799 // LOCUS WNMC01000000 93 rc DNA linear VRT 03-JAN-2020 DEFINITION Chiroxiphia lanceolata isolate bChiLan1, whole genome shotgun sequencing project. ACCESSION WNMC00000000 VERSION WNMC00000000.1 DBLINK BioProject: PRJNA561943 BioSample: SAMN12620979 KEYWORDS WGS. SOURCE Chiroxiphia lanceolata (lance-tailed manakin) ORGANISM Chiroxiphia lanceolata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Pipridae; Chiroxiphia. REFERENCE 1 (bases 1 to 93) AUTHORS Duval,E.H., Balakrishnan,C.N., Baldwin,M.W., Frandsen,P.B., Fusani,L., Fuxjager,M.J., Lim,H.C., Pfenning,A.R., Mello,C.V., Schlinger,B.A., Wirthlin,M., Sims,Y., Wood,J., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Chiroxiphia lanceolata (Lanced-tailed manakin) genome, bChiLan1, primary haplotypeChiroxiphia lanceolata (Lanced-tailed manakin) genome, bChiLan1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 93) AUTHORS Duval,E.H., Balakrishnan,C.N., Baldwin,M.W., Frandsen,P.B., Fusani,L., Fuxjager,M.J., Lim,H.C., Pfenning,A.R., Mello,C.V., Schlinger,B.A., Wirthlin,M., Sims,Y., Wood,J., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (22-NOV-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Chiroxiphia lanceolata whole genome shotgun (WGS) project has the project accession WNMC00000000. This version of the project (01) has the accession number WNMC01000000, and consists of sequences WNMC01000001-WNMC01000093. This assembly represents the principal haplotype of the diploid genome Chiroxiphia lanceolata and includes the chromosomes. The alternate haplotype sequences are in WGS project WNMD00000000. ##Genome-Assembly-Data-START## Assembly Date :: 08-OCT-2019 Assembly Method :: FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_haplotigs v. v1.0.3+ 1.Nov.2018; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-10-08; VGP assembly pipeline v. 1.5 Assembly Name :: bChiLan1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 67.75x Sequencing Technology :: PacBio Sequel I CLR; llumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..93 /organism="Chiroxiphia lanceolata" /mol_type="genomic DNA" /isolate="bChiLan1" /db_xref="taxon:296741" /sex="female" /tissue_type="isolated red blood cells" /dev_stage="adult" /country="Panama: Isla Boca Btava" /lat_lon="8.2166658 N 82.2666656 W" /collection_date="14-Apr-2017" /collected_by="Emily DuVal" WGS WNMC01000001-WNMC01000093 WGS_SCAFLD CM020533-CM020567 // LOCUS WNLY01000000 94 rc DNA linear MAM 03-JAN-2020 DEFINITION Mustela erminea isolate mMusErm1, whole genome shotgun sequencing project. ACCESSION WNLY00000000 VERSION WNLY00000000.1 DBLINK BioProject: PRJNA561931 BioSample: SAMN12611999 KEYWORDS WGS. SOURCE Mustela erminea (ermine) ORGANISM Mustela erminea Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Mustelidae; Mustelinae; Mustela. REFERENCE 1 (bases 1 to 94) AUTHORS Veale,A., Uliano Da Silva,M., Fedrigo,O., Formenti,G., Cruickshank,T., Mountcastle,J., Collins,J., Sims,Y., Rhie,A., Koepfli,K.-P. and Jarvis,E.D. TITLE Mustela erminea (stoat), mMusErm1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 94) AUTHORS Veale,A., Uliano Da Silva,M., Fedrigo,O., Formenti,G., Cruickshank,T., Mountcastle,J., Collins,J., Sims,Y., Rhie,A., Koepfli,K.-P. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (17-NOV-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Mustela erminea whole genome shotgun (WGS) project has the project accession WNLY00000000. This version of the project (01) has the accession number WNLY01000000, and consists of sequences WNLY01000001-WNLY01000094. This assembly represents the principal haplotype of the diploid genome Mustela erminea and includes the chromosomes. The alternate haplotype sequences are in WGS project WNLZ00000000. ##Genome-Assembly-Data-START## Assembly Date :: 17-OCT-2019 Assembly Method :: FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_dups v. 1; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.2; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-10-17; VGP assembly pipeline individual v. 1.6 Assembly Name :: mMusErm1.Pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 62.86x Sequencing Technology :: PacBio Sequel; llumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..94 /organism="Mustela erminea" /mol_type="genomic DNA" /isolate="mMusErm1" /db_xref="taxon:36723" /sex="male" /tissue_type="spleen (genome), liver, muscle, kidney" /dev_stage="adult" /country="New Zealand: Coromandel" /lat_lon="37.304717 S 175.755071 E" /collected_by="Andrew Veale, Tim Cruickshank" WGS WNLY01000001-WNLY01000094 // LOCUS WNMA01000000 124 rc DNA linear VRT 03-JAN-2020 DEFINITION Periophthalmus magnuspinnatus isolate fPerMag1, whole genome shotgun sequencing project. ACCESSION WNMA00000000 VERSION WNMA00000000.1 DBLINK BioProject: PRJNA561998 BioSample: SAMN12629500 KEYWORDS WGS. SOURCE Periophthalmus magnuspinnatus ORGANISM Periophthalmus magnuspinnatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Gobiaria; Gobiiformes; Gobioidei; Gobiidae; Oxudercinae; Periophthalmus. REFERENCE 1 (bases 1 to 124) AUTHORS Lee,C., Uliano Da Silva,M., Rhie,A., Fedrigo,O., Formenti,G., Mountcastle,J., Tracey,A., Sims,Y., Kim,J., Ko,B.J., Kim,Y.W., Nam,B., No,E.S., Kim,J.K., Bae,S.E., Venkatesh,B., Mccarthy,S., Phillippy,A., Durbin,R., Myers,E., Jarvis,E.D. and Kim,H. TITLE Periophthalmus magnuspinnatus (Korean giant-fin mudskipper) genome, fPerMag1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 124) AUTHORS Lee,C., Uliano Da Silva,M., Rhie,A., Fedrigo,O., Formenti,G., Mountcastle,J., Tracey,A., Sims,Y., Kim,J., Ko,B.J., Kim,Y.W., Nam,B., No,E.S., Kim,J.K., Bae,S.E., Venkatesh,B., Mccarthy,S., Phillippy,A., Durbin,R., Myers,E., Jarvis,E.D. and Kim,H. TITLE Direct Submission JOURNAL Submitted (18-NOV-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Periophthalmus magnuspinnatus whole genome shotgun (WGS) project has the project accession WNMA00000000. This version of the project (01) has the accession number WNMA01000000, and consists of sequences WNMA01000001-WNMA01000124. This assembly represents the principal haplotype of the diploid genome Periophthalmus magnuspinnatus and includes the chromosomes. The alternate haplotype sequences are in WGS project WNMB00000000. ##Genome-Assembly-Data-START## Assembly Date :: 11-OCT-2019 Assembly Method :: FALCON v. 2018.31.08-03.06; FALCON-Unzip v. 6.0.0.47841; purge_dups v. 51544-08-31; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-10-11; VGP assembly pipeline individual v. 1.6 Assembly Name :: fPerMag1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 69.53x Sequencing Technology :: PacBio Sequel I CLR; llumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..124 /organism="Periophthalmus magnuspinnatus" /mol_type="genomic DNA" /isolate="fPerMag1" /db_xref="taxon:409849" /sex="female" /tissue_type="muscle and gills" /dev_stage="adult" /country="South Korea: Yellow Sea; JF4H+5P Ganghwa-gun, Incheon" /lat_lon="37.605444 N 126.479306 E" /collection_date="16-Oct-2018" /collected_by="Chul Lee, Joowan Kim, Jingu Kim" WGS WNMA01000001-WNMA01000124 WGS_SCAFLD CM020591-CM020616 // LOCUS WHPP01000000 894 rc DNA linear VRT 03-JAN-2020 DEFINITION Corvus moneduloides isolate bCorMon1, whole genome shotgun sequencing project. ACCESSION WHPP00000000 VERSION WHPP00000000.1 DBLINK BioProject: PRJNA560982 BioSample: SAMN12368441 KEYWORDS WGS. SOURCE Corvus moneduloides (New Caledonian crow) ORGANISM Corvus moneduloides Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Corvidae; Corvus. REFERENCE 1 (bases 1 to 894) AUTHORS Rutz,C., Fungtammasan,C., Mountcastle,J., Formenti,G., Chow,W., Howe,K., Steele,M.P., Fernandes,J., Gilbert,M.T.P., Fedrigo,O., Jarvis,E.D. and Gemmell,N. TITLE Corvus moneduloides (New Caledonian crow) genome, bCorMon1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 894) AUTHORS Rutz,C., Fungtammasan,C., Mountcastle,J., Formenti,G., Chow,W., Howe,K., Steele,M.P., Fernandes,J., Gilbert,M.T.P., Fedrigo,O., Jarvis,E.D. and Gemmell,N. TITLE Direct Submission JOURNAL Submitted (14-OCT-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Corvus moneduloides whole genome shotgun (WGS) project has the project accession WHPP00000000. This version of the project (01) has the accession number WHPP01000000, and consists of sequences WHPP01000001-WHPP01000894. This assembly represents the alternate haplotype of the diploid genome Corvus moneduloides. The principal haplotype sequences are in WGS project WHPO00000000. ##Genome-Assembly-Data-START## Assembly Date :: 26-SEP-2019 Assembly Method :: FALCON v. 5.1.1; FALCON-Unzip + Arrow v. 1.0.2; purge_dups v. github ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b; longranger alignment v. 2.2.2; freebayes polishing v. 1.3.1; gEVAL manual curation v. 26 SEP 2019; VGP assembly pipeline v. 1.6 Assembly Name :: bCorMon1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 62.08x Sequencing Technology :: PacBio Sequel I; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..894 /organism="Corvus moneduloides" /mol_type="genomic DNA" /isolate="bCorMon1" /db_xref="taxon:1196302" /sex="female" /tissue_type="blood" /country="New Caledonia: near Bourail" /lat_lon="21.599296 S 165.398128 E" /collection_date="17-Oct-2018" /collected_by="Matthew Steele" WGS WHPP01000001-WHPP01000894 // LOCUS WOYB01000000 57 rc DNA linear VRT 31-DEC-2019 DEFINITION Hippoglossus hippoglossus isolate fHipHip1, whole genome shotgun sequencing project. ACCESSION WOYB00000000 VERSION WOYB00000000.1 DBLINK BioProject: PRJNA562001 BioSample: SAMN12629501 KEYWORDS WGS. SOURCE Hippoglossus hippoglossus (Atlantic halibut) ORGANISM Hippoglossus hippoglossus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Hippoglossus. REFERENCE 1 (bases 1 to 57) AUTHORS Einfeldt,T., Fedrigo,O., Mountcastle,J., Haase,B., Balacco,J., Collins,J., Chow,W., Howe,K., Bentzen,P., Ruzzante,D., Formenti,G., Myers,G., Bryappa,V., Durbin,R. and Jarvis,E. TITLE Hippoglossus hippoglossus (Atlantic Halibut) genome, fHipHip1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 57) AUTHORS Einfeldt,T., Fedrigo,O., Mountcastle,J., Haase,B., Balacco,J., Collins,J., Chow,W., Howe,K., Bentzen,P., Ruzzante,D., Formenti,G., Myers,G., Bryappa,V., Durbin,R. and Jarvis,E. TITLE Direct Submission JOURNAL Submitted (03-DEC-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Hippoglossus hippoglossus whole genome shotgun (WGS) project has the project accession WOYB00000000. This version of the project (01) has the accession number WOYB01000000, and consists of sequences WOYB01000001-WOYB01000057. This assembly represents the principal haplotype of the diploid genome Hippoglossus hippoglossus and includes the chromosomes. The alternate haplotype sequences are in WGS project WOYC00000000. ##Genome-Assembly-Data-START## Assembly Date :: 25-NOV-2019 Assembly Method :: FALCON v. 2018.31.08-03.06; FALCON-Unzip v. smrtlink_6.0.0.47841; purge_haplotigs v. 1.0.3; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. smrtlink_6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-11-27; VGP assembly pipeline individual v. 1.5 Assembly Name :: fHipHip1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 56.23x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..57 /organism="Hippoglossus hippoglossus" /mol_type="genomic DNA" /isolate="fHipHip1" /db_xref="taxon:8267" /sex="male" /tissue_type="muscle" /dev_stage="adult" /country="Canada: Atlantic Ocean" /lat_lon="44.63694 N 63.59167 W" /collected_by="Tony Einfeldt" WGS WOYB01000001-WOYB01000057 WGS_SCAFLD CM020190-CM020214 // LOCUS WNMY01000000 189 rc DNA linear VRT 31-DEC-2019 DEFINITION Sylvia atricapilla isolate bSylAtr1, whole genome shotgun sequencing project. ACCESSION WNMY00000000 VERSION WNMY00000000.1 DBLINK BioProject: PRJNA558064 BioSample: SAMN12369542 KEYWORDS WGS. SOURCE Sylvia atricapilla (blackcap) ORGANISM Sylvia atricapilla Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Sylviidae; Sylviinae; Sylvia. REFERENCE 1 (bases 1 to 189) AUTHORS Liedvogel,M., Rhie,A., Chow,W., Collins,J., Howe,K., Uliano Da Silva,M., Formenti,G., Phillippy,A., Fedrigo,O. and Jarvis,E.D. TITLE Sylvia atricapilla (European blackcap) genome, bSylAtr1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 189) AUTHORS Liedvogel,M., Rhie,A., Chow,W., Collins,J., Howe,K., Uliano Da Silva,M., Formenti,G., Phillippy,A., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (14-NOV-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Sylvia atricapilla whole genome shotgun (WGS) project has the project accession WNMY00000000. This version of the project (01) has the accession number WNMY01000000, and consists of sequences WNMY01000001-WNMY01000189. This assembly represents the principal haplotype of the diploid genome Sylvia atricapilla and includes the chromosomes. The alternate haplotype sequences are in WGS project WNMZ00000000. ##Genome-Assembly-Data-START## Assembly Date :: 16-SEP-2019 Assembly Method :: FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_haplotigs v. v1.0.3+ 1.Nov.2018; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-09-16; VGP assembly pipeline individual v. 1.5 Assembly Name :: bSylAtr1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 66.29x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..189 /organism="Sylvia atricapilla" /mol_type="genomic DNA" /isolate="bSylAtr1" /db_xref="taxon:48155" /sex="female" /tissue_type="blood" /country="Spain: Tarifa" /lat_lon="36.01393 N 5.60695 W" /collection_date="02-Aug-2017" /collected_by="Miriam Liedvogel" WGS WNMY01000001-WNMY01000189 WGS_SCAFLD CM020465-CM020499 // LOCUS WNMS01000000 29 rc DNA linear VRT 31-DEC-2019 DEFINITION Lacerta agilis isolate rLacAgi1, whole genome shotgun sequencing project. ACCESSION WNMS00000000 VERSION WNMS00000000.1 DBLINK BioProject: PRJNA562018 BioSample: SAMN12629509 KEYWORDS WGS. SOURCE Lacerta agilis ORGANISM Lacerta agilis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Laterata; Lacertibaenia; Lacertidae; Lacerta. REFERENCE 1 (bases 1 to 29) AUTHORS Gemmell,N., Haase,B., Formenti,G., Sims,Y., Wood,J., Howe,K., Mountcastle,J., Lillie,M., Olsson,M., Rhie,A., Fedrigo,O. and Jarvis,E.D. TITLE Lacerta agilis (Sand lizard) genome, rLacAgi1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 29) AUTHORS Gemmell,N., Haase,B., Formenti,G., Sims,Y., Wood,J., Howe,K., Mountcastle,J., Lillie,M., Olsson,M., Rhie,A., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (14-NOV-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Lacerta agilis whole genome shotgun (WGS) project has the project accession WNMS00000000. This version of the project (01) has the accession number WNMS01000000, and consists of sequences WNMS01000001-WNMS01000029. This assembly represents the principal haplotype of the diploid genome Lacerta agilis and includes the chromosomes. The alternate haplotype sequences are in WGS project WNMT00000000. ##Genome-Assembly-Data-START## Assembly Date :: 24-SEP-2019 Assembly Method :: FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_haplotigs v. v1.0.3+ 1.Nov.2018; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 6.0.0.47841; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-09-24; VGP assembly pipeline individual v. 1.5 Assembly Name :: rLacAgi1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 63.42x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..29 /organism="Lacerta agilis" /mol_type="genomic DNA" /isolate="rLacAgi1" /db_xref="taxon:80427" /sex="female" /tissue_type="blood" /dev_stage="adult" /country="Sweden: Halland" /lat_lon="57.489552 N 11.936655 E" /collection_date="28-May-2018" /collected_by="Mette Lillie, Mats Olsson" WGS WNMS01000001-WNMS01000029 WGS_SCAFLD CM020416-CM020436 // LOCUS WNMM01000000 104 rc DNA linear VRT 31-DEC-2019 DEFINITION Aythya fuligula isolate bAytFul2, whole genome shotgun sequencing project. ACCESSION WNMM00000000 VERSION WNMM00000000.1 DBLINK BioProject: PRJNA561952 BioSample: SAMN12621346 KEYWORDS WGS. SOURCE Aythya fuligula (tufted duck) ORGANISM Aythya fuligula Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Aythyinae; Aythya. REFERENCE 1 (bases 1 to 104) AUTHORS Kraus,R.H.S., Uliano Da Silva,M., Formenti,G., Mountcastle,J., Chow,W., Wood,J., Howe,K., Ellstrom,P., Naguib,M., Jarhult,J., Rhie,A., Fedrigo,O. and Jarvis,E.D. TITLE Aythya fuligula (Tufted Duck) genome, bAytFul2, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 104) AUTHORS Kraus,R.H.S., Uliano Da Silva,M., Formenti,G., Mountcastle,J., Chow,W., Wood,J., Howe,K., Ellstrom,P., Naguib,M., Jarhult,J., Rhie,A., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (14-NOV-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Aythya fuligula whole genome shotgun (WGS) project has the project accession WNMM00000000. This version of the project (01) has the accession number WNMM01000000, and consists of sequences WNMM01000001-WNMM01000104. This assembly represents the principal haplotype of the diploid genome Aythya fuligula and includes the chromosomes. The alternate haplotype sequences are in WGS project WNMN00000000. ##Genome-Assembly-Data-START## Assembly Date :: 20-SEP-2019 Assembly Method :: FALCON v. 2018.31.08-03.06; FALCON-Unzip v. 6.0.0.47841; purge_haplotigs v. v1.0.3+ 1.Nov.2018; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3; gEVAL manual curation v. 2019-09-20; VGP assembly pipeline individual v. 1.5 Assembly Name :: bAytFul2.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 64.03x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..104 /organism="Aythya fuligula" /mol_type="genomic DNA" /isolate="bAytFul2" /db_xref="taxon:219594" /sex="female" /tissue_type="lung (powdered)" /dev_stage="adult" /country="Sweden" /lat_lon="59.8509 N 17.6300 E" /collection_date="28-Aug-2017" /collected_by="Patrik Ellstrom, Mahmoud Naguib, Josef Jarhult" WGS WNMM01000001-WNMM01000104 WGS_SCAFLD CM020300-CM020335 // LOCUS WNMK01000000 90 rc DNA linear VRT 31-DEC-2019 DEFINITION Phoenicopterus ruber ruber isolate bPhoRub2, whole genome shotgun sequencing project. ACCESSION WNMK00000000 VERSION WNMK00000000.1 DBLINK BioProject: PRJNA561888 BioSample: SAMN12614931 KEYWORDS WGS. SOURCE Phoenicopterus ruber ruber ORGANISM Phoenicopterus ruber ruber Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Phoenicopteriformes; Phoenicopteridae; Phoenicopterus. REFERENCE 1 (bases 1 to 90) AUTHORS Gilbert,M.T.P., Haase,B., Secomandi,S., Fromenti,G., Chow,W., Wood,J., Howe,K., Bertelson,M., Rhie,A., Fedrigo,O. and Jarvis,E.D. TITLE Phoenicopterus ruber ruber (American Flamingo) genome, bPhoRub2, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 90) AUTHORS Gilbert,M.T.P., Haase,B., Secomandi,S., Fromenti,G., Chow,W., Wood,J., Howe,K., Bertelson,M., Rhie,A., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (14-NOV-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Phoenicopterus ruber ruber whole genome shotgun (WGS) project has the project accession WNMK00000000. This version of the project (01) has the accession number WNMK01000000, and consists of sequences WNMK01000001-WNMK01000090. This assembly represents the principal haplotype of the diploid genome Phoenicopterus ruber ruber and includes the chromosomes. The alternate haplotype sequences are in WGS project WNML00000000. ##Genome-Assembly-Data-START## Assembly Date :: 13-AUG-2019 Assembly Method :: FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_haplotigs v. v1.0.3+ 1.Nov.2018; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3; gEVAL manual curation v. 2019-08-13; VGP assembly pipeline individual v. 1.5 Assembly Name :: bPhoRub2.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 61.27x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..90 /organism="Phoenicopterus ruber ruber" /mol_type="genomic DNA" /isolate="bPhoRub2" /sub_species="ruber" /db_xref="taxon:9218" /sex="female" /tissue_type="blood" /dev_stage="adult" /country="Denmark: Copenhagen Zoo" /lat_lon="55.67278 N 12.52139 E" /collection_date="2008" /collected_by="Mads Bertelsen" WGS WNMK01000001-WNMK01000090 WGS_SCAFLD CM020215-CM020247 // LOCUS WOYC01000000 4053 rc DNA linear VRT 27-DEC-2019 DEFINITION Hippoglossus hippoglossus isolate fHipHip1, whole genome shotgun sequencing project. ACCESSION WOYC00000000 VERSION WOYC00000000.1 DBLINK BioProject: PRJNA562002 BioSample: SAMN12629501 KEYWORDS WGS. SOURCE Hippoglossus hippoglossus (Atlantic halibut) ORGANISM Hippoglossus hippoglossus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Hippoglossus. REFERENCE 1 (bases 1 to 4053) AUTHORS Einfeldt,T., Fedrigo,O., Mountcastle,J., Haase,B., Balacco,J., Collins,J., Chow,W., Howe,K., Bentzen,P., Ruzzante,D., Formenti,G., Myers,G., Bryappa,V., Durbin,R. and Jarvis,E.D. TITLE Hippoglossus hippoglossus (Atlantic Halibut) genome, fHipHip1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 4053) AUTHORS Einfeldt,T., Fedrigo,O., Mountcastle,J., Haase,B., Balacco,J., Collins,J., Chow,W., Howe,K., Bentzen,P., Ruzzante,D., Formenti,G., Myers,G., Bryappa,V., Durbin,R. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (03-DEC-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Hippoglossus hippoglossus whole genome shotgun (WGS) project has the project accession WOYC00000000. This version of the project (01) has the accession number WOYC01000000, and consists of sequences WOYC01000001-WOYC01004053. This assembly represents the alternate haplotype of the diploid genome Hippoglossus hippoglossus. The principal haplotype sequences are in WGS project WOYB00000000. ##Genome-Assembly-Data-START## Assembly Date :: 25-NOV-2019 Assembly Method :: FALCON v. 2018.31.08-03.06; FALCON-Unzip v. smrtlink_6.0.0.47841; purge_haplotigs v. 1.0.3; longranger align x v. 6.0.0.47841; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-11-27; VGP assembly pipeline individual v. 1.5 Assembly Name :: fHipHip1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 56.23x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..4053 /organism="Hippoglossus hippoglossus" /mol_type="genomic DNA" /isolate="fHipHip1" /db_xref="taxon:8267" /sex="male" /tissue_type="muscle" /dev_stage="adult" /country="Canada: Atlantic Ocean" /lat_lon="44.63694 N 63.59167 W" /collected_by="Tony Einfeldt" WGS WOYC01000001-WOYC01004053 // LOCUS WNMT01000000 12660 rc DNA linear VRT 23-DEC-2019 DEFINITION Lacerta agilis isolate rLacAgi1, whole genome shotgun sequencing project. ACCESSION WNMT00000000 VERSION WNMT00000000.1 DBLINK BioProject: PRJNA562019 BioSample: SAMN12629509 KEYWORDS WGS. SOURCE Lacerta agilis ORGANISM Lacerta agilis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Laterata; Lacertibaenia; Lacertidae; Lacerta. REFERENCE 1 (bases 1 to 12660) AUTHORS Gemmell,N., Haase,B., Formenti,G., Sims,Y., Wood,J., Howe,K., Mountcastle,J., Lillie,M., Olsson,M., Rhie,A., Fedrigo,O. and Jarvis,E.D. TITLE Lacerta agilis (Sand lizard) genome, rLacAgi1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 12660) AUTHORS Gemmell,N., Haase,B., Formenti,G., Sims,Y., Wood,J., Howe,K., Mountcastle,J., Lillie,M., Olsson,M., Rhie,A., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (14-NOV-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Lacerta agilis whole genome shotgun (WGS) project has the project accession WNMT00000000. This version of the project (01) has the accession number WNMT01000000, and consists of sequences WNMT01000001-WNMT01012660. This assembly represents the alternate haplotype of the diploid genome Lacerta agilis. The principal haplotype sequences are in WGS project WNMS00000000. ##Genome-Assembly-Data-START## Assembly Date :: 24-SEP-2019 Assembly Method :: FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_haplotigs v. v1.0.3+ 1.Nov.2018; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-09-24; VGP assembly pipeline individual v. 1.5 Assembly Name :: rLacAgi1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 63.42x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..12660 /organism="Lacerta agilis" /mol_type="genomic DNA" /isolate="rLacAgi1" /db_xref="taxon:80427" /sex="female" /tissue_type="blood" /dev_stage="adult" /country="Sweden: Halland" /lat_lon="57.489552 N 11.936655 E" /collection_date="28-May-2018" /collected_by="Mette Lillie, Mats Olsson" WGS WNMT01000001-WNMT01012660 // LOCUS WNMZ01000000 3566 rc DNA linear VRT 23-DEC-2019 DEFINITION Sylvia atricapilla isolate bSylAtr1, whole genome shotgun sequencing project. ACCESSION WNMZ00000000 VERSION WNMZ00000000.1 DBLINK BioProject: PRJNA558065 BioSample: SAMN12369542 KEYWORDS WGS. SOURCE Sylvia atricapilla (blackcap) ORGANISM Sylvia atricapilla Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Sylviidae; Sylviinae; Sylvia. REFERENCE 1 (bases 1 to 3566) AUTHORS Liedvogel,M., Rhie,A., Chow,W., Collins,J., Howe,K., Uliano Da Silva,M., Formenti,G., Phillippy,A., Fedrigo,O. and Jarvis,E.D. TITLE Sylvia atricapilla (European blackcap) genome, bSylAtr1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 3566) AUTHORS Liedvogel,M., Rhie,A., Chow,W., Collins,J., Howe,K., Uliano Da Silva,M., Formenti,G., Phillippy,A., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (14-NOV-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Sylvia atricapilla whole genome shotgun (WGS) project has the project accession WNMZ00000000. This version of the project (01) has the accession number WNMZ01000000, and consists of sequences WNMZ01000001-WNMZ01003566. This assembly represents the alternate haplotype of the diploid genome Sylvia atricapilla. The principal haplotype sequences are in WGS project WNMY00000000. ##Genome-Assembly-Data-START## Assembly Date :: 16-SEP-2019 Assembly Method :: FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_haplotigs v. v1.0.3+ 1.Nov.2018; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-09-16; VGP assembly pipeline individual v. 1.5 Assembly Name :: bSylAtr1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 66.29x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..3566 /organism="Sylvia atricapilla" /mol_type="genomic DNA" /isolate="bSylAtr1" /db_xref="taxon:48155" /sex="female" /tissue_type="blood" /country="Spain: Tarifa" /lat_lon="36.01393 N 5.60695 W" /collection_date="02-Aug-2017" /collected_by="Miriam Liedvogel" WGS WNMZ01000001-WNMZ01003566 // LOCUS WNMX01000000 2235 rc DNA linear VRT 23-DEC-2019 DEFINITION Sterna hirundo isolate bSteHir1, whole genome shotgun sequencing project. ACCESSION WNMX00000000 VERSION WNMX00000000.1 DBLINK BioProject: PRJNA558063 BioSample: SAMN12369541 KEYWORDS WGS. SOURCE Sterna hirundo (Common tern) ORGANISM Sterna hirundo Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Laridae; Sterna. REFERENCE 1 (bases 1 to 2235) AUTHORS Liedvogel,M., Caswara,C., Formenti,G., Chow,W., Wood,J., Howe,K., Bouwhuis,S., Fedrigo,O. and Jarvis,E.D. TITLE Sterna hirundo (common tern) genome, bSteHir1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 2235) AUTHORS Liedvogel,M., Caswara,C., Formenti,G., Chow,W., Wood,J., Howe,K., Bouwhuis,S., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (14-NOV-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Sterna hirundo whole genome shotgun (WGS) project has the project accession WNMX00000000. This version of the project (01) has the accession number WNMX01000000, and consists of sequences WNMX01000001-WNMX01002235. This assembly represents the alternate haplotype of the diploid genome Sterna hirundo. The principal haplotype sequences are in WGS project WNMW00000000. ##Genome-Assembly-Data-START## Assembly Date :: 06-JUL-2019 Assembly Method :: FALCON v. 2018.31.08-03.06; FALCON-Unzip v. 6.0.0.47841; purge_haplotigs v. v1.0.3+ 1.Nov.2018; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-08-20; VGP assembly pipeline individual v. 1.5 Assembly Name :: bSteHir1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 67.91x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..2235 /organism="Sterna hirundo" /mol_type="genomic DNA" /isolate="bSteHir1" /db_xref="taxon:108405" /sex="female" /tissue_type="blood" /country="Germany: Wilhelmshaven, Lower Saxonia" /lat_lon="53.52998 N 8.11253 E" /collection_date="01-Aug-2018" /collected_by="Sandra Bouwhuis" WGS WNMX01000001-WNMX01002235 // LOCUS WNMV01000000 3296 rc DNA linear VRT 23-DEC-2019 DEFINITION Merops nubicus isolate bMerNub1, whole genome shotgun sequencing project. ACCESSION WNMV00000000 VERSION WNMV00000000.1 DBLINK BioProject: PRJNA561895 BioSample: SAMN12621035 KEYWORDS WGS. SOURCE Merops nubicus (carmine bee-eater) ORGANISM Merops nubicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Coraciiformes; Meropidae; Merops. REFERENCE 1 (bases 1 to 3296) AUTHORS Gilbert,M.T.P., Caswara,C., Chow,W., Wood,J., Howe,K., Bertelson,M., Rhie,A., Fedrigo,O. and Jarvis,E.D. TITLE Merops nubicus (Carmine Bee-eater) genome, bMerNub1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 3296) AUTHORS Gilbert,M.T.P., Caswara,C., Chow,W., Wood,J., Howe,K., Bertelson,M., Rhie,A., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (14-NOV-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Merops nubicus whole genome shotgun (WGS) project has the project accession WNMV00000000. This version of the project (01) has the accession number WNMV01000000, and consists of sequences WNMV01000001-WNMV01003296. This assembly represents the alternate haplotype of the diploid genome Merops nubicus. The principal haplotype sequences are in WGS project WNMU00000000. ##Genome-Assembly-Data-START## Assembly Date :: 15-AUG-2019 Assembly Method :: FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_haplotigs v. v1.0.3+ 1.Nov.2018; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-08-15; VGP assembly pipeline individual v. 1.5 Assembly Name :: bMerNub1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 60.12x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..3296 /organism="Merops nubicus" /mol_type="genomic DNA" /isolate="bMerNub1" /db_xref="taxon:57421" /sex="female" /tissue_type="blood" /dev_stage="adult" /country="Denmark: Copenhagen Zoo" /lat_lon="55.67278 N 12.52139 E" /collection_date="04-Aug-2011" /collected_by="Mads Bertelsen" WGS WNMV01000001-WNMV01003296 // LOCUS WNMW01000000 123 rc DNA linear VRT 23-DEC-2019 DEFINITION Sterna hirundo isolate bSteHir1, whole genome shotgun sequencing project. ACCESSION WNMW00000000 VERSION WNMW00000000.1 DBLINK BioProject: PRJNA558062 BioSample: SAMN12369541 KEYWORDS WGS. SOURCE Sterna hirundo (Common tern) ORGANISM Sterna hirundo Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Laridae; Sterna. REFERENCE 1 (bases 1 to 123) AUTHORS Liedvogel,M., Caswara,C., Formenti,G., Chow,W., Wood,J., Howe,K., Bouwhuis,S., Fedrigo,O. and Jarvis,E.D. TITLE Sterna hirundo (common tern) genome, bSteHir1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 123) AUTHORS Liedvogel,M., Caswara,C., Formenti,G., Chow,W., Wood,J., Howe,K., Bouwhuis,S., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (14-NOV-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Sterna hirundo whole genome shotgun (WGS) project has the project accession WNMW00000000. This version of the project (01) has the accession number WNMW01000000, and consists of sequences WNMW01000001-WNMW01000123. This assembly represents the principal haplotype of the diploid genome Sterna hirundo and includes the chromosomes. The alternate haplotype sequences are in WGS project WNMX00000000. ##Genome-Assembly-Data-START## Assembly Date :: 20-AUG-2019 Assembly Method :: FALCON v. 2018.31.08-03.06; FALCON-Unzip v. 6.0.0.47841; purge_haplotigs v. v1.0.3+ 1.Nov.2018; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-08-20; VGP assembly pipeline individual v. 1.5 Assembly Name :: bSteHir1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 67.91x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..123 /organism="Sterna hirundo" /mol_type="genomic DNA" /isolate="bSteHir1" /db_xref="taxon:108405" /sex="female" /tissue_type="blood" /country="Germany: Wilhelmshaven, Lower Saxonia" /lat_lon="53.52998 N 8.11253 E" /collection_date="01-Aug-2018" /collected_by="Sandra Bouwhuis" WGS WNMW01000001-WNMW01000123 // LOCUS WNMU01000000 109 rc DNA linear VRT 23-DEC-2019 DEFINITION Merops nubicus isolate bMerNub1, whole genome shotgun sequencing project. ACCESSION WNMU00000000 VERSION WNMU00000000.1 DBLINK BioProject: PRJNA561894 BioSample: SAMN12621035 KEYWORDS WGS. SOURCE Merops nubicus (carmine bee-eater) ORGANISM Merops nubicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Coraciiformes; Meropidae; Merops. REFERENCE 1 (bases 1 to 109) AUTHORS Gilbert,M.T.P., Caswara,C., Chow,W., Wood,J., Howe,K., Bertelson,M., Rhie,A., Fedrigo,O. and Jarvis,E.D. TITLE Merops nubicus (Carmine Bee-eater) genome, bMerNub1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 109) AUTHORS Gilbert,M.T.P., Caswara,C., Chow,W., Wood,J., Howe,K., Bertelson,M., Rhie,A., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (14-NOV-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Merops nubicus whole genome shotgun (WGS) project has the project accession WNMU00000000. This version of the project (01) has the accession number WNMU01000000, and consists of sequences WNMU01000001-WNMU01000109. This assembly represents the principal haplotype of the diploid genome Merops nubicus and includes the chromosomes. The alternate haplotype sequences are in WGS project WNMV00000000. ##Genome-Assembly-Data-START## Assembly Date :: 15-AUG-2019 Assembly Method :: FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_haplotigs v. v1.0.3+ 1.Nov.2018; scaff10x v. 2.0.2; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-08-15; VGP assembly pipeline individual v. 1.5 Assembly Name :: bMerNub1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 60.12x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..109 /organism="Merops nubicus" /mol_type="genomic DNA" /isolate="bMerNub1" /db_xref="taxon:57421" /sex="female" /tissue_type="blood" /dev_stage="adult" /country="Denmark: Copenhagen Zoo" /lat_lon="55.67278 N 12.52139 E" /collection_date="04-Aug-2011" /collected_by="Mads Bertelsen" WGS WNMU01000001-WNMU01000109 // LOCUS WNMP01000000 2840 rc DNA linear VRT 23-DEC-2019 DEFINITION Cariama cristata isolate bCarCri1, whole genome shotgun sequencing project. ACCESSION WNMP00000000 VERSION WNMP00000000.1 DBLINK BioProject: PRJNA561893 BioSample: SAMN12614807 KEYWORDS WGS. SOURCE Cariama cristata (Red-legged seriema) ORGANISM Cariama cristata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Cariamiformes; Cariamidae; Cariama. REFERENCE 1 (bases 1 to 2840) AUTHORS Gilbert,M.T.P., Uliano Da Silva,M., Formenti,G., Chow,W., Collins,J., Howe,K., Bertelson,M., Rhie,A., Fedrigo,O. and Jarvis,E.D. TITLE Cariama cristata (Red-legged seriema) genome, bCarCri1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 2840) AUTHORS Gilbert,M.T.P., Uliano Da Silva,M., Formenti,G., Chow,W., Collins,J., Howe,K., Bertelson,M., Rhie,A., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (14-NOV-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Cariama cristata whole genome shotgun (WGS) project has the project accession WNMP00000000. This version of the project (01) has the accession number WNMP01000000, and consists of sequences WNMP01000001-WNMP01002840. This assembly represents the alternate haplotype of the diploid genome Cariama cristata. The principal haplotype sequences are in WGS project WNMO00000000. ##Genome-Assembly-Data-START## Assembly Date :: 16-SEP-2019 Assembly Method :: FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_haplotigs v. v1.0.3+ 1.Nov.2018; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-09-16; VGP assembly pipeline individual v. 1.5 Assembly Name :: bCarCri1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 50.93x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..2840 /organism="Cariama cristata" /mol_type="genomic DNA" /isolate="bCarCri1" /db_xref="taxon:54380" /sex="female" /tissue_type="blood" /dev_stage="adult" /country="Denmark: Copenhagen Zoo" /lat_lon="55.67278 N 12.52139 E" /collection_date="29-Jun-2008" /collected_by="Mads Bertelsen" WGS WNMP01000001-WNMP01002840 // LOCUS WNML01000000 3529 rc DNA linear VRT 23-DEC-2019 DEFINITION Phoenicopterus ruber ruber isolate bPhoRub2, whole genome shotgun sequencing project. ACCESSION WNML00000000 VERSION WNML00000000.1 DBLINK BioProject: PRJNA561889 BioSample: SAMN12614931 KEYWORDS WGS. SOURCE Phoenicopterus ruber ruber ORGANISM Phoenicopterus ruber ruber Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Phoenicopteriformes; Phoenicopteridae; Phoenicopterus. REFERENCE 1 (bases 1 to 3529) AUTHORS Gilbert,M.T.P., Haase,B., Secomandi,S., Formenti,G., Chow,W., Wood,J., Howe,K., Bertelson,M., Rhie,A., Fedrigo,O. and Jarvis,E.D. TITLE Phoenicopterus ruber ruber (American Flamingo) genome, bPhoRub2, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 3529) AUTHORS Gilbert,M.T.P., Haase,B., Secomandi,S., Formenti,G., Chow,W., Wood,J., Howe,K., Bertelson,M., Rhie,A., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (14-NOV-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Phoenicopterus ruber ruber whole genome shotgun (WGS) project has the project accession WNML00000000. This version of the project (01) has the accession number WNML01000000, and consists of sequences WNML01000001-WNML01003529. This assembly represents the alternate haplotype of the diploid genome Phoenicopterus ruber ruber. The principal haplotype sequences are in WGS project WNMK00000000. ##Genome-Assembly-Data-START## Assembly Date :: 13-AUG-2019 Assembly Method :: FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_haplotigs v. v1.0.3+ 1.Nov.2018; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3; gEVAL manual curation v. 2019-08-13; VGP assembly pipeline individual v. 1.5 Assembly Name :: bPhoRub2.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 61.27x Sequencing Technology :: PacBio Sequel; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..3529 /organism="Phoenicopterus ruber ruber" /mol_type="genomic DNA" /isolate="bPhoRub2" /sub_species="ruber" /db_xref="taxon:9218" /sex="female" /tissue_type="blood" /dev_stage="adult" /country="Denmark: Copenhagen Zoo" /lat_lon="55.67278 N 12.52139 E" /collection_date="2008" /collected_by="Mads Bertelsen" WGS WNML01000001-WNML01003529 // LOCUS WNMO01000000 110 rc DNA linear VRT 23-DEC-2019 DEFINITION Cariama cristata isolate bCarCri1, whole genome shotgun sequencing project. ACCESSION WNMO00000000 VERSION WNMO00000000.1 DBLINK BioProject: PRJNA561892 BioSample: SAMN12614807 KEYWORDS WGS. SOURCE Cariama cristata (Red-legged seriema) ORGANISM Cariama cristata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Cariamiformes; Cariamidae; Cariama. REFERENCE 1 (bases 1 to 110) AUTHORS Gilbert,M.T.P., Uliano Da Silva,M., Formenti,G., Chow,W., Collins,J., Howe,K., Bertelson,M., Rhie,A., Fedrigo,O. and Jarvis,E.D. TITLE Cariama cristata (Red-legged seriema) genome, bCarCri1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 110) AUTHORS Gilbert,M.T.P., Uliano Da Silva,M., Formenti,G., Chow,W., Collins,J., Howe,K., Bertelson,M., Rhie,A., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (14-NOV-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Cariama cristata whole genome shotgun (WGS) project has the project accession WNMO00000000. This version of the project (01) has the accession number WNMO01000000, and consists of sequences WNMO01000001-WNMO01000110. This assembly represents the principal haplotype of the diploid genome Cariama cristata and includes the chromosomes. The alternate haplotype sequences are in WGS project WNMP00000000. ##Genome-Assembly-Data-START## Assembly Date :: 16-SEP-2019 Assembly Method :: FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_haplotigs v. v1.0.3+ 1.Nov.2018; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-09-16; VGP assembly pipeline individual v. 1.5 Assembly Name :: bCarCri1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 50.93x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..110 /organism="Cariama cristata" /mol_type="genomic DNA" /isolate="bCarCri1" /db_xref="taxon:54380" /sex="female" /tissue_type="blood" /dev_stage="adult" /country="Denmark: Copenhagen Zoo" /lat_lon="55.67278 N 12.52139 E" /collection_date="29-Jun-2008" /collected_by="Mads Bertelsen" WGS WNMO01000001-WNMO01000110 // LOCUS WNMN01000000 780 rc DNA linear VRT 23-DEC-2019 DEFINITION Aythya fuligula isolate bAytFul2, whole genome shotgun sequencing project. ACCESSION WNMN00000000 VERSION WNMN00000000.1 DBLINK BioProject: PRJNA561953 BioSample: SAMN12621346 KEYWORDS WGS. SOURCE Aythya fuligula (tufted duck) ORGANISM Aythya fuligula Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Aythyinae; Aythya. REFERENCE 1 (bases 1 to 780) AUTHORS Kraus,R.H.S., Uliano Da Silva,M., Formenti,G., Mountcastle,J., Chow,W., Wood,J., Howe,K., Ellstrom,P., Naguib,M., Jarhult,J., Rhie,A., Fedrigo,O. and Jarvis,E.D. TITLE Aythya fuligula (Tufted Duck) genome, bAytFul2, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 780) AUTHORS Kraus,R.H.S., Uliano Da Silva,M., Formenti,G., Mountcastle,J., Chow,W., Wood,J., Howe,K., Ellstrom,P., Naguib,M., Jarhult,J., Rhie,A., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (14-NOV-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Aythya fuligula whole genome shotgun (WGS) project has the project accession WNMN00000000. This version of the project (01) has the accession number WNMN01000000, and consists of sequences WNMN01000001-WNMN01000780. This assembly represents the alternate haplotype of the diploid genome Aythya fuligula. The principal haplotype sequences are in WGS project WNMM00000000. ##Genome-Assembly-Data-START## Assembly Date :: 20-SEP-2019 Assembly Method :: FALCON v. 2018.31.08-03.06; FALCON-Unzip v. 6.0.0.47841; purge_haplotigs v. v1.0.3+ 1.Nov.2018; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3; gEVAL manual curation v. 2019-09-20; VGP assembly pipeline individual v. 1.5 Assembly Name :: bAytFul2.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 64.03x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..780 /organism="Aythya fuligula" /mol_type="genomic DNA" /isolate="bAytFul2" /db_xref="taxon:219594" /sex="female" /tissue_type="lung (powdered)" /dev_stage="adult" /country="Sweden" /lat_lon="59.8509 N 17.6300 E" /collection_date="28-Aug-2017" /collected_by="Patrik Ellstrom, Mahmoud Naguib, Josef Jarhult" WGS WNMN01000001-WNMN01000780 // LOCUS WNMG01000000 112 rc DNA linear VRT 23-DEC-2019 DEFINITION Bucorvus abyssinicus isolate bBucAby1, whole genome shotgun sequencing project. ACCESSION WNMG00000000 VERSION WNMG00000000.1 DBLINK BioProject: PRJNA561887 BioSample: SAMN12614799 KEYWORDS WGS. SOURCE Bucorvus abyssinicus (Abyssinian ground-hornbill) ORGANISM Bucorvus abyssinicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Bucerotiformes; Bucorvidae; Bucorvus. REFERENCE 1 (bases 1 to 112) AUTHORS Gilbert,M.T.P., Da Silva,M., Formenti,G., Chow,W., Wood,J., Howe,K., Bertelson,M., Rhie,A., Fedrigo,O. and Jarvis,E.D. TITLE Bucorvus abyssinicus (Abyssinian ground hornbill) genome, bBucAby1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 112) AUTHORS Gilbert,M.T.P., Da Silva,M., Formenti,G., Chow,W., Wood,J., Howe,K., Bertelson,M., Rhie,A., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (14-NOV-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Bucorvus abyssinicus whole genome shotgun (WGS) project has the project accession WNMG00000000. This version of the project (01) has the accession number WNMG01000000, and consists of sequences WNMG01000001-WNMG01000112. This assembly represents the principal haplotype of the diploid genome Bucorvus abyssinicus and includes the chromosomes. The alternate haplotype sequences are in WGS project WNMH00000000. ##Genome-Assembly-Data-START## Assembly Date :: 12-AUG-2019 Assembly Method :: FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_haplotigs v. 1.0.3+ 1.Nov.2018; Scaff10x v. 4.1.0; Bionano solve v. 3.2.1_04122018; Salsa HiC v. 2.2; Arrow polishing + gap filling v. smrtlink_6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3; gEVAL manual curation v. 2019-08-12; VGP assembly pipeline individual v. 1.5 Assembly Name :: bBucAby1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 66.0x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..112 /organism="Bucorvus abyssinicus" /mol_type="genomic DNA" /isolate="bBucAby1" /db_xref="taxon:153643" /sex="female" /tissue_type="blood" /dev_stage="adult" /country="Denmark: Copenhagen Zoo" /lat_lon="55.67278 N 12.52139 E" /collection_date="30-Oct-2008" /collected_by="Mads Bertelsen" WGS WNMG01000001-WNMG01000112 WGS_SCAFLD CM020024-CM020064 // LOCUS WNNE01000000 89 rc DNA linear VRT 23-DEC-2019 DEFINITION Pterocles gutturalis isolate bPteGut1, whole genome shotgun sequencing project. ACCESSION WNNE00000000 VERSION WNNE00000000.1 DBLINK BioProject: PRJNA561958 BioSample: SAMN12623217 KEYWORDS WGS. SOURCE Pterocles gutturalis (yellow-throated sandgrouse) ORGANISM Pterocles gutturalis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Ciconiiformes; Pteroclidae; Pterocles. REFERENCE 1 (bases 1 to 89) AUTHORS Gilbert,M.T.P., Lee,C., Fedrigo,O., Formenti,G., Mountcastle,J., Chow,W., Tracey,A., Howe,K., Pas,A. and Jarvis,E.D. TITLE Pterocles gutturalis (Yellow-throated sandgrouse) genome, bPteGut1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 89) AUTHORS Gilbert,M.T.P., Lee,C., Fedrigo,O., Formenti,G., Mountcastle,J., Chow,W., Tracey,A., Howe,K., Pas,A. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (15-NOV-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Pterocles gutturalis whole genome shotgun (WGS) project has the project accession WNNE00000000. This version of the project (01) has the accession number WNNE01000000, and consists of sequences WNNE01000001-WNNE01000089. This assembly represents the principal haplotype of the diploid genome Pterocles gutturalis and includes the chromosomes. The alternate haplotype sequences are in WGS project WNNF00000000. ##Genome-Assembly-Data-START## Assembly Date :: 16-OCT-2019 Assembly Method :: FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_dups v. 51544-08-31; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing v. 6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-10-16; VGP assembly pipeline individual v. 1.6 Assembly Name :: bPteGut1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 70.94x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..89 /organism="Pterocles gutturalis" /mol_type="genomic DNA" /isolate="bPteGut1" /db_xref="taxon:240206" /sex="male" /tissue_type="blood" /dev_stage="adult" /country="Tanzania" /lat_lon="6 S 35 E" /collected_by="An Pas" WGS WNNE01000001-WNNE01000089 WGS_SCAFLD CM020141-CM020177 // LOCUS WNNA01000000 365 rc DNA linear VRT 23-DEC-2019 DEFINITION Thamnophis elegans isolate rThaEle1, whole genome shotgun sequencing project. ACCESSION WNNA00000000 VERSION WNNA00000000.1 DBLINK BioProject: PRJNA561996 BioSample: SAMN12629499 KEYWORDS WGS. SOURCE Thamnophis elegans (Western terrestrial garter snake) ORGANISM Thamnophis elegans Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Colubridae; Natricinae; Thamnophis. REFERENCE 1 (bases 1 to 365) AUTHORS Bronikowski,A., Fedrigo,O., Fungtammasan,C., Rhie,A., Mountcastle,J., Haase,B., Howe,K., Chow,W., Collins,J. and Jarvis,E.D. TITLE Thamnophis elegans (Western terrestrial garter snake) genome, rThaEle1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 365) AUTHORS Bronikowski,A., Fedrigo,O., Fungtammasan,C., Rhie,A., Mountcastle,J., Haase,B., Howe,K., Chow,W., Collins,J. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (14-NOV-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Thamnophis elegans whole genome shotgun (WGS) project has the project accession WNNA00000000. This version of the project (01) has the accession number WNNA01000000, and consists of sequences WNNA01000001-WNNA01000365. This assembly represents the principal haplotype of the diploid genome Thamnophis elegans and includes the chromosomes. The alternate haplotype sequences are in WGS project WNNB00000000. ##Genome-Assembly-Data-START## Assembly Date :: 20-AUG-2019 Assembly Method :: FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_haplotigs v. v1.0.3+ 1.Nov.2018; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishSing & gap filling v. 6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-08-20; VGP assembly pipeline individual v. 1.5 Assembly Name :: rThaEle1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 62.12x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..365 /organism="Thamnophis elegans" /mol_type="genomic DNA" /isolate="rThaEle1" /db_xref="taxon:35005" /sex="female" /tissue_type="blood" /dev_stage="juvenile" /country="USA: Born in Anne Bronikowsk lab at ISU; MOM, 2012; Eagle Lake; PAP" /lat_lon="42.02482 N 93.64411 W" /collection_date="01-Apr-2018" /collected_by="Anne Bronikowski" WGS WNNA01000001-WNNA01000365 WGS_SCAFLD CM020096-CM020113 // LOCUS WNNB01000000 13623 rc DNA linear VRT 19-DEC-2019 DEFINITION Thamnophis elegans isolate rThaEle1, whole genome shotgun sequencing project. ACCESSION WNNB00000000 VERSION WNNB00000000.1 DBLINK BioProject: PRJNA561997 BioSample: SAMN12629499 KEYWORDS WGS. SOURCE Thamnophis elegans (Western terrestrial garter snake) ORGANISM Thamnophis elegans Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Colubridae; Natricinae; Thamnophis. REFERENCE 1 (bases 1 to 13623) AUTHORS Bronikowski,A., Fedrigo,O., Fungtammasan,C., Rhie,A., Mountcastle,J., Haase,B., Howe,K., Chow,W., Collins,J. and Jarvis,E.D. TITLE Thamnophis elegans (Western terrestrial garter snake) genome, rThaEle1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 13623) AUTHORS Bronikowski,A., Fedrigo,O., Fungtammasan,C., Rhie,A., Mountcastle,J., Haase,B., Howe,K., Chow,W., Collins,J. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (14-NOV-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Thamnophis elegans whole genome shotgun (WGS) project has the project accession WNNB00000000. This version of the project (01) has the accession number WNNB01000000, and consists of sequences WNNB01000001-WNNB01013623. This assembly represents the alternate haplotype of the diploid genome Thamnophis elegans. The principal haplotype sequences are in WGS project WNNAA00000000. ##Genome-Assembly-Data-START## Assembly Date :: 20-AUG-2019 Assembly Method :: FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_haplotigs v. v1.0.3+ 1.Nov.2018; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-08-20; VGP assembly pipeline individual v. 1.5 Assembly Name :: rThaEle1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 62.12x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..13623 /organism="Thamnophis elegans" /mol_type="genomic DNA" /isolate="rThaEle1" /db_xref="taxon:35005" /sex="female" /tissue_type="blood" /dev_stage="juvenile" /country="USA: Born in Anne Bronikowsk lab at ISU; MOM, 2012; Eagle Lake; PAP" /lat_lon="42.02482 N 93.64411 W" /collection_date="01-Apr-2018" /collected_by="Anne Bronikowski" WGS WNNB01000001-WNNB01013623 // LOCUS WNMH01000000 3527 rc DNA linear VRT 19-DEC-2019 DEFINITION Bucorvus abyssinicus isolate bBucAby1, whole genome shotgun sequencing project. ACCESSION WNMH00000000 VERSION WNMH00000000.1 DBLINK BioProject: PRJNA561886 BioSample: SAMN12614799 KEYWORDS WGS. SOURCE Bucorvus abyssinicus (Abyssinian ground-hornbill) ORGANISM Bucorvus abyssinicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Bucerotiformes; Bucorvidae; Bucorvus. REFERENCE 1 (bases 1 to 3527) AUTHORS Gilbert,M.T.P., Da Silva,M., Formenti,G., Chow,W., Wood,J., Howe,K., Bertelson,M., Rhie,A., Fedrigo,O. and Jarvis,E.D. TITLE Bucorvus abyssinicus (Abyssinian ground hornbill) genome, bBucAby1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 3527) AUTHORS Gilbert,M.T.P., Da Silva,M., Formenti,G., Chow,W., Wood,J., Howe,K., Bertelson,M., Rhie,A., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (14-NOV-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Bucorvus abyssinicus whole genome shotgun (WGS) project has the project accession WNMH00000000. This version of the project (01) has the accession number WNMH01000000, and consists of sequences WNMH01000001-WNMH01003527. This assembly represents the alternate haplotype of the diploid genome Bucorvus abyssinicus. The principal haplotype sequences are in WGS project WNMG00000000. ##Genome-Assembly-Data-START## Assembly Date :: 12-AUG-2019 Assembly Method :: FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_haplotigs v. 1.0.3+ 1.Nov.2018; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3; gEVAL manual curation v. 2019-08-12; VGP assembly pipeline individual v. 1.5 Assembly Name :: bBucAby1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 66.0x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..3527 /organism="Bucorvus abyssinicus" /mol_type="genomic DNA" /isolate="bBucAby1" /db_xref="taxon:153643" /sex="female" /tissue_type="blood" /dev_stage="adult" /country="Denmark: Copenhagen Zoo" /lat_lon="55.67278 N 12.52139 E" /collection_date="30-Oct-2008" /collected_by="Mads Bertelsen" WGS WNMH01000001-WNMH01003527 // LOCUS WNNF01000000 1958 rc DNA linear VRT 19-DEC-2019 DEFINITION Pterocles gutturalis isolate bPteGut1, whole genome shotgun sequencing project. ACCESSION WNNF00000000 VERSION WNNF00000000.1 DBLINK BioProject: PRJNA561959 BioSample: SAMN12623217 KEYWORDS WGS. SOURCE Pterocles gutturalis (yellow-throated sandgrouse) ORGANISM Pterocles gutturalis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Ciconiiformes; Pteroclidae; Pterocles. REFERENCE 1 (bases 1 to 1958) AUTHORS Gilbert,M.T.P., Lee,C., Fedrigo,O., Formenti,G., Mountcastle,J., Chow,W., Tracey,A., Howe,K., Pas,A. and Jarvis,E.D. TITLE Pterocles gutturalis (Yellow-throated sandgrouse) genome, bPteGut1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 1958) AUTHORS Gilbert,M.T.P., Lee,C., Fedrigo,O., Formenti,G., Mountcastle,J., Chow,W., Tracey,A., Howe,K., Pas,A. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (15-NOV-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Pterocles gutturalis whole genome shotgun (WGS) project has the project accession WNNF00000000. This version of the project (01) has the accession number WNNF01000000, and consists of sequences WNNF01000001-WNNF01001958. This assembly represents the alternate haplotype of the diploid genome Pterocles gutturalis. The principal haplotype sequences are in WGS project WNNE00000000. ##Genome-Assembly-Data-START## Assembly Date :: 16-OCT-2019 Assembly Method :: FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_dups v. 51544-08-31; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-10-16; VGP assembly pipeline individual v. 1.6 Assembly Name :: bPteGut1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 70.94x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1958 /organism="Pterocles gutturalis" /mol_type="genomic DNA" /isolate="bPteGut1" /db_xref="taxon:240206" /sex="male" /tissue_type="blood" /dev_stage="adult" /country="Tanzania" /lat_lon="6 S 35 E" /collected_by="An Pas" WGS WNNF01000001-WNNF01001958 // LOCUS WNND01000000 1866 rc DNA linear VRT 19-DEC-2019 DEFINITION Cyclopterus lumpus isolate fCycLum1, whole genome shotgun sequencing project. ACCESSION WNND00000000 VERSION WNND00000000.1 DBLINK BioProject: PRJNA562004 BioSample: SAMN12629502 KEYWORDS WGS. SOURCE Cyclopterus lumpus (lumpfish) ORGANISM Cyclopterus lumpus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Cottales; Cyclopteridae; Cyclopterus. REFERENCE 1 (bases 1 to 1866) AUTHORS Einfeldt,T., Fedrigo,O., Rhie,A., Formenti,G., Mountcastle,J., Tracey,A., Sims,Y., Messmer,A., Howe,K. and Jarvis,E.D. TITLE Cyclopterus lumpus (Lumpfish) genome, fCycLum1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 1866) AUTHORS Einfeldt,T., Fedrigo,O., Rhie,A., Formenti,G., Mountcastle,J., Tracey,A., Sims,Y., Messmer,A., Howe,K. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (14-NOV-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Cyclopterus lumpus whole genome shotgun (WGS) project has the project accession WNND00000000. This version of the project (01) has the accession number WNND01000000, and consists of sequences WNND01000001-WNND01001866. This assembly represents the alternate haplotype of the diploid genome Cyclopterus lumpus. The principal haplotype sequences are in WGS project WNNC00000000. ##Genome-Assembly-Data-START## Assembly Date :: 11-OCT-2019 Assembly Method :: FALCON v. 2018.31.08-03.06; FALCON-Unzip v. 6.0.0.47841; purge_dups v. 51544-08-31; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-10-11; VGP assembly pipeline individual v. 1.5 Assembly Name :: fCycLum1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 55.96x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1866 /organism="Cyclopterus lumpus" /mol_type="genomic DNA" /isolate="fCycLum1" /db_xref="taxon:8103" /sex="male" /tissue_type="muscle/heart" /dev_stage="adult" /country="Canada: Atlantic Ocean" /lat_lon="44.63694 N 63.59167 W" /collection_date="29-Nov-2018" /collected_by="Tony Einfeldt" WGS WNND01000001-WNND01001866 // LOCUS WNNC01000000 49 rc DNA linear VRT 19-DEC-2019 DEFINITION Cyclopterus lumpus isolate fCycLum1, whole genome shotgun sequencing project. ACCESSION WNNC00000000 VERSION WNNC00000000.1 DBLINK BioProject: PRJNA562003 BioSample: SAMN12629502 KEYWORDS WGS. SOURCE Cyclopterus lumpus (lumpfish) ORGANISM Cyclopterus lumpus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Cottales; Cyclopteridae; Cyclopterus. REFERENCE 1 (bases 1 to 49) AUTHORS Einfeldt,T., Fedrigo,O., Rhie,A., Formenti,G., Mountcastle,J., Tracey,A., Sims,Y., Messmer,A., Howe,K. and Jarvis,E.D. TITLE Cyclopterus lumpus (Lumpfish) genome, fCycLum1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 49) AUTHORS Einfeldt,T., Fedrigo,O., Rhie,A., Formenti,G., Mountcastle,J., Tracey,A., Sims,Y., Messmer,A., Howe,K. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (14-NOV-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Cyclopterus lumpus whole genome shotgun (WGS) project has the project accession WNNC00000000. This version of the project (01) has the accession number WNNC01000000, and consists of sequences WNNC01000001-WNNC01000049. This assembly represents the principal haplotype of the diploid genome Cyclopterus lumpus and includes the chromosomes. The alternate haplotype sequences are in WGS project WNND00000000. ##Genome-Assembly-Data-START## Assembly Date :: 11-OCT-2019 Assembly Method :: FALCON v. 2018.31.08-03.06; FALCON-Unzip v. 6.0.0.47841; purge_dups v. 51544-08-31; scaff10x v. 6.0.0.4784; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 2019-10-11; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-10-11; VGP assembly pipeline individual v. 1.6 Assembly Name :: fCycLum1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 55.96x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..49 /organism="Cyclopterus lumpus" /mol_type="genomic DNA" /isolate="fCycLum1" /db_xref="taxon:8103" /sex="male" /tissue_type="muscle/heart" /dev_stage="adult" /country="Canada: Atlantic Ocean" /lat_lon="44.63694 N 63.59167 W" /collection_date="29-Nov-2018" /collected_by="Tony Einfeldt" WGS WNNC01000001-WNNC01000049 // LOCUS WOXW01000000 140 rc DNA linear VRT 19-DEC-2019 DEFINITION Tauraco erythrolophus isolate bTauEry1, whole genome shotgun sequencing project. ACCESSION WOXW00000000 VERSION WOXW00000000.1 DBLINK BioProject: PRJNA561947 BioSample: SAMN12621036 KEYWORDS WGS. SOURCE Tauraco erythrolophus (red-crested turaco) ORGANISM Tauraco erythrolophus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Musophagiformes; Musophagidae; Tauraco. REFERENCE 1 (bases 1 to 140) AUTHORS Gilbert,M.T.P., Formenti,G., Secomandi,S., Mountcastle,J., Chow,W., Pelan,S., Howe,K., Bertelson,M., Rhie,A., Fedrigo,O. and Jarvis,E.D. TITLE Tauraco erythrolophus (red-crested turaco) genome, bTauEry1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 140) AUTHORS Gilbert,M.T.P., Formenti,G., Secomandi,S., Mountcastle,J., Chow,W., Pelan,S., Howe,K., Bertelson,M., Rhie,A., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (25-NOV-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Tauraco erythrolophus whole genome shotgun (WGS) project has the project accession WOXW00000000. This version of the project (01) has the accession number WOXW01000000, and consists of sequences WOXW01000001-WOXW01000140. This assembly represents the principal haplotype of the diploid genome Tauraco erythrolophus and includes the chromosomes. The alternate haplotype sequences are in WGS project WOXX00000000. ##Genome-Assembly-Data-START## Assembly Date :: 13-AUG-2019 Assembly Method :: FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_haplotigs v. v1.0.3+ 1.Nov.2018; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-08-13; VGP assembly pipeline individual v. 1.5 Assembly Name :: bTauEry1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 65.99x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..140 /organism="Tauraco erythrolophus" /mol_type="genomic DNA" /isolate="bTauEry1" /db_xref="taxon:121530" /sex="female" /tissue_type="blood" /dev_stage="adult" /country="Denmark: Copenhagen Zoo" /lat_lon="55.67278 N 12.52139 E" /collection_date="2008" /collected_by="Mads Bertelsen" WGS WOXW01000001-WOXW01000140 WGS_SCAFLD CM019966-CM019998 // LOCUS WSPJ01000000 278 rc DNA linear VRT 19-DEC-2019 DEFINITION Geothlypis trichas isolate bGeoTri1, whole genome shotgun sequencing project. ACCESSION WSPJ00000000 VERSION WSPJ00000000.1 DBLINK BioProject: PRJNA589703 BioSample: SAMN12631222 KEYWORDS WGS. SOURCE Geothlypis trichas (common yellowthroat) ORGANISM Geothlypis trichas Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Parulidae; Geothlypis. REFERENCE 1 (bases 1 to 278) AUTHORS Dunn,P., Minias,P., Tracey,A., Chow,W., Howe,K., Rhie,A., Phillippy,A., Fedrigo,O., Whittingham,L.A. and Jarvis,E.D. TITLE Geothlypis trichas (Common yellowthroat) genome, bGeoTri1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 278) AUTHORS Dunn,P., Minias,P., Tracey,A., Chow,W., Howe,K., Rhie,A., Phillippy,A., Fedrigo,O., Whittingham,L.A. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (05-DEC-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Geothlypis trichas whole genome shotgun (WGS) project has the project accession WSPJ00000000. This version of the project (01) has the accession number WSPJ01000000, and consists of sequences WSPJ01000001-WSPJ01000278. This assembly represents the principal haplotype of the diploid genome Geothlypis trichas and includes the chromosomes. The alternate haplotype sequences are in WGS project WSPK00000000. ##Genome-Assembly-Data-START## Assembly Date :: 08-OCT-2019 Assembly Method :: FALCON DNANexus v. 1.9.0; FALCON-Unzip DNANexus v. 1.0.6; purge_haplotigs v. v1.0.3+ 1.Nov.2018; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-10-08; VGP assembly pipeline v. 1.5 Assembly Name :: bGeoTri1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 52.11x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..278 /organism="Geothlypis trichas" /mol_type="genomic DNA" /isolate="bGeoTri1" /db_xref="taxon:135433" /sex="female" /tissue_type="Tissue" /dev_stage="adult" /country="USA: Wisconsin" /lat_lon="43.23 N 88.01 W" /collection_date="26-May-2013" /collected_by="Peter Dunn" WGS WSPJ01000001-WSPJ01000278 WGS_SCAFLD CM019901-CM019934 // LOCUS WOXV01000000 10892 rc DNA linear VRT 18-DEC-2019 DEFINITION Pristis pectinata isolate sPriPec2, whole genome shotgun sequencing project. ACCESSION WOXV00000000 VERSION WOXV00000000.1 DBLINK BioProject: PRJNA562010 BioSample: SAMN12629505 KEYWORDS WGS. SOURCE Pristis pectinata (smalltooth sawfish) ORGANISM Pristis pectinata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Batoidea; Rhinopristiformes; Pristidae; Pristis. REFERENCE 1 (bases 1 to 10892) AUTHORS Naylor,G., Rhie,A., Mountcastle,J., Haase,B., Formenti,G., Prohaska,B., Bryappa,V., White,S., Wood,J., Chow,W., Howe,K., Jarvis,E.D. and Fedrigo,O. TITLE Pristis pectinata (smalltooth sawfish) genome, sPriPec2, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 10892) AUTHORS Naylor,G., Rhie,A., Mountcastle,J., Haase,B., Formenti,G., Prohaska,B., Bryappa,V., White,S., Wood,J., Chow,W., Howe,K., Jarvis,E.D. and Fedrigo,O. TITLE Direct Submission JOURNAL Submitted (25-NOV-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Pristis pectinata whole genome shotgun (WGS) project has the project accession WOXV00000000. This version of the project (01) has the accession number WOXV01000000, and consists of sequences WOXV01000001-WOXV01010892. This assembly represents the alternate haplotype of the diploid genome Pristis pectinata. The principal haplotype sequences are in WGS project WOXU00000000. ##Genome-Assembly-Data-START## Assembly Date :: 18-NOV-2019 Assembly Method :: FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_haplotigs v. v1.0.3+ 1.Nov.2018; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-11-18; VGP assembly pipeline individual v. 1.5 Assembly Name :: sPriPec2.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 61.91x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..10892 /organism="Pristis pectinata" /mol_type="genomic DNA" /isolate="sPriPec2" /db_xref="taxon:685728" /sex="female" /tissue_type="blood" /dev_stage="juvenile" /country="USA: Tennessee Reef, Florida" /lat_lon="24.766667 N 80.75 W" /collection_date="01-Aug-2018" /collected_by="Bianca Prohaska" WGS WOXV01000001-WOXV01010892 // LOCUS WOXX01000000 3476 rc DNA linear VRT 18-DEC-2019 DEFINITION Tauraco erythrolophus isolate bTauEry1, whole genome shotgun sequencing project. ACCESSION WOXX00000000 VERSION WOXX00000000.1 DBLINK BioProject: PRJNA561948 BioSample: SAMN12621036 KEYWORDS WGS. SOURCE Tauraco erythrolophus (red-crested turaco) ORGANISM Tauraco erythrolophus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Musophagiformes; Musophagidae; Tauraco. REFERENCE 1 (bases 1 to 3476) AUTHORS Gilbert,M.T.P., Formenti,G., Secomandi,S., Mountcastle,J., Chow,W., Pelan,S., Howe,K., Bertelson,M., Rhie,A., Fedrigo,O. and Jarvis,E.D. TITLE Tauraco erythrolophus (red-crested turaco) genome, bTauEry1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 3476) AUTHORS Gilbert,M.T.P., Formenti,G., Secomandi,S., Mountcastle,J., Chow,W., Pelan,S., Howe,K., Bertelson,M., Rhie,A., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (25-NOV-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Tauraco erythrolophus whole genome shotgun (WGS) project has the project accession WOXX00000000. This version of the project (01) has the accession number WOXX01000000, and consists of sequences WOXX01000001-WOXX01003476. This assembly represents the alternate haplotype of the diploid genome Tauraco erythrolophus. The principal haplotype sequences are in WGS project WOXW00000000. ##Genome-Assembly-Data-START## Assembly Date :: 13-AUG-2019 Assembly Method :: FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_haplotigs v. v1.0.3+ 1.Nov.2018; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-08-13; VGP assembly pipeline individual v. 1.5 Assembly Name :: bTauEry1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 65.99x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..3476 /organism="Tauraco erythrolophus" /mol_type="genomic DNA" /isolate="bTauEry1" /db_xref="taxon:121530" /sex="female" /tissue_type="blood" /dev_stage="adult" /country="Denmark: Copenhagen Zoo" /lat_lon="55.67278 N 12.52139 E" /collection_date="2008" /collected_by="Mads Bertelsen" WGS WOXX01000001-WOXX01003476 // LOCUS WSPK01000000 4976 rc DNA linear VRT 18-DEC-2019 DEFINITION Geothlypis trichas isolate bGeoTri1, whole genome shotgun sequencing project. ACCESSION WSPK00000000 VERSION WSPK00000000.1 DBLINK BioProject: PRJNA589704 BioSample: SAMN12631222 KEYWORDS WGS. SOURCE Geothlypis trichas (common yellowthroat) ORGANISM Geothlypis trichas Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Parulidae; Geothlypis. REFERENCE 1 (bases 1 to 4976) AUTHORS Dunn,P., Minias,P., Tracey,A., Chow,W., Howe,K., Rhie,A., Phillippy,A., Fedrigo,O., Whittingham,L.A. and Jarvis,E.D. TITLE Geothlypis trichas (Common yellowthroat) genome, bGeoTri1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 4976) AUTHORS Dunn,P., Minias,P., Tracey,A., Chow,W., Howe,K., Rhie,A., Phillippy,A., Fedrigo,O., Whittingham,L.A. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (05-DEC-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Geothlypis trichas whole genome shotgun (WGS) project has the project accession WSPK00000000. This version of the project (01) has the accession number WSPK01000000, and consists of sequences WSPK01000001-WSPK01004976. This assembly represents the alternate haplotype of the diploid genome Geothlypis trichas. The principal haplotype sequences are in WGS project WSPJ00000000. ##Genome-Assembly-Data-START## Assembly Date :: 08-OCT-2019 Assembly Method :: FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_haplotigs v. v1.0.3+ 1.Nov.2018; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-10-08; VGP assembly pipeline v. 1.5 Assembly Name :: bGeoTri1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 52.11x Sequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..4976 /organism="Geothlypis trichas" /mol_type="genomic DNA" /isolate="bGeoTri1" /db_xref="taxon:135433" /sex="female" /tissue_type="Tissue" /dev_stage="adult" /country="USA: Wisconsin" /lat_lon="43.23 N 88.01 W" /collection_date="26-May-2013" /collected_by="Peter Dunn" WGS WSPK01000001-WSPK01004976 // LOCUS WRPQ01000000 60551 rc DNA linear PRI 18-DEC-2019 DEFINITION Sapajus apella isolate SASKATOON/1434, whole genome shotgun sequencing project. ACCESSION WRPQ00000000 VERSION WRPQ00000000.1 DBLINK BioProject: PRJNA588076 BioSample: SAMN13265339 KEYWORDS WGS. SOURCE Sapajus apella (tufted capuchin) ORGANISM Sapajus apella Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Cebinae; Sapajus. REFERENCE 1 (bases 1 to 60551) AUTHORS Culibrk,L., Leelakumari,S., Tse,K., Cheng,D., Chuah,E., Kirk,H., Pandoh,P., Troussard,A., Zhao,Y., Mungall,A., Moore,R., Marra,M.A., Sinclair-Smith,T. and Jones,S.J.M. TITLE The genome of the Tufted Capuchin (Sapajus apella) JOURNAL Unpublished REFERENCE 2 (bases 1 to 60551) AUTHORS Culibrk,L., Leelakumari,S., Tse,K., Cheng,D., Chuah,E., Kirk,H., Pandoh,P., Troussard,A., Zhao,Y., Mungall,A., Moore,R., Marra,M.A., Sinclair-Smith,T. and Jones,S.J.M. TITLE Direct Submission JOURNAL Submitted (06-DEC-2019) Canada's Michael Smith Genome Sciences Centre, BC Cancer, 570 7th Ave, Vancouver, British Columbia V5Z 4S6, Canada COMMENT The Sapajus apella whole genome shotgun (WGS) project has the project accession WRPQ00000000. This version of the project (01) has the accession number WRPQ01000000, and consists of sequences WRPQ01000001-WRPQ01060551. ##Genome-Assembly-Data-START## Assembly Date :: NOV-2019 Assembly Method :: Supernova v. 2.1.1 Assembly Name :: GSC_monkey_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 34.0x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..60551 /organism="Sapajus apella" /mol_type="genomic DNA" /isolate="SASKATOON/1434" /db_xref="taxon:9515" /sex="female" /tissue_type="blood" /dev_stage="adult" WGS WRPQ01000001-WRPQ01060551 WGS_SCAFLD ML771900-ML775958 // LOCUS WOTM01000000 3286 rc DNA linear VRT 17-DEC-2019 DEFINITION Notolabrus celidotus isolate fNotCel1, whole genome shotgun sequencing project. ACCESSION WOTM00000000 VERSION WOTM00000000.1 DBLINK BioProject: PRJNA561957 BioSample: SAMN12623201 KEYWORDS WGS. SOURCE Notolabrus celidotus (New Zealand spotty) ORGANISM Notolabrus celidotus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Labriformes; Labridae; Notolabrus. REFERENCE 1 (bases 1 to 3286) AUTHORS Gemmel,N., Mountcastle,J., Haase,B., Hill,N., Fungtammasan,C., Rhie,A., Todd,E., Muncaster,S., Goikoetxea,A., Tracey,A., Sims,Y., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Notolabrus celidotus (New Zealand spotty wrasse) genome, fNotCel1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 3286) AUTHORS Gemmel,N., Mountcastle,J., Haase,B., Hill,N., Fungtammasan,C., Rhie,A., Todd,E., Muncaster,S., Goikoetxea,A., Tracey,A., Sims,Y., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (28-NOV-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Notolabrus celidotus whole genome shotgun (WGS) project has the project accession WOTM00000000. This version of the project (01) has the accession number WOTM01000000, and consists of sequences WOTM01000001-WOTM01003286. Due to size limit cut off, this submission does not include a 137 bp scaffold_651_arrow_ctg1, which does not match any sequence in the current NCBI database, but was assembled in this species. The assembly with that scaffold included can be found in Genome Ark as of the time of this submission: https://vgp.github.io/genomeark/Notolabrus_celidotus/ This assembly represents the alternate haplotype of the diploid genome Notolabrus celidotus. The principal haplotype sequences are in WGS project WOTL00000000. ##Genome-Assembly-Data-START## Assembly Date :: 08-NOV-2019 Assembly Method :: FALCON v. 2019-Jan-23patch1; FALCON-Unzip v. 2019-Jan-23patch1; purge_dups v. v1; longranger align v. 2.2.2; gEVAL manual curation v. 2019-11-08; VGP assembly pipeline individual v. 1.6 Polishing Method :: freebayes Illumina polishing v. 1.3.1 Assembly Name :: fNotCel1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 71.06x Sequencing Technology :: PacBio Sequel I CLR; llumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..3286 /organism="Notolabrus celidotus" /mol_type="genomic DNA" /isolate="fNotCel1" /db_xref="taxon:1203425" /sex="male" /tissue_type="liver" /dev_stage="adult" /country="New Zealand: Tauranga" /lat_lon="37.39219 S 176.09222 E" /collection_date="24-May-2018" /collected_by="Simon Muncaster, Erica Todd, Neil Gemmell" WGS WOTM01000001-WOTM01003286 // LOCUS WOTL01000000 468 rc DNA linear VRT 17-DEC-2019 DEFINITION Notolabrus celidotus isolate fNotCel1, whole genome shotgun sequencing project. ACCESSION WOTL00000000 VERSION WOTL00000000.1 DBLINK BioProject: PRJNA561956 BioSample: SAMN12623201 KEYWORDS WGS. SOURCE Notolabrus celidotus (New Zealand spotty) ORGANISM Notolabrus celidotus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Labriformes; Labridae; Notolabrus. REFERENCE 1 (bases 1 to 468) AUTHORS Gemmel,N., Mountcastle,J., Haase,B., Hill,N., Fungtammasan,C., Rhie,A., Todd,E., Muncaster,S., Goikoetxea,A., Tracey,A., Sims,Y., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Notolabrus celidotus (New Zealand spotty wrasse) genome, fNotCel1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 468) AUTHORS Gemmel,N., Mountcastle,J., Haase,B., Hill,N., Fungtammasan,C., Rhie,A., Todd,E., Muncaster,S., Goikoetxea,A., Tracey,A., Sims,Y., Howe,K., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (28-NOV-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Notolabrus celidotus whole genome shotgun (WGS) project has the project accession WOTL00000000. This version of the project (01) has the accession number WOTL01000000, and consists of sequences WOTL01000001-WOTL01000468. Due to size limit cut off, this submission does not include a 137 bp scaffold_651_arrow_ctg1, which does not match any sequence in the current NCBI database, but was assembled in this species. The assembly with that scaffold included can be found in Genome Ark as of the time of this submission: https://vgp.github.io/genomeark/Notolabrus_celidotus/ This assembly represents the principal haplotype of the diploid genome Notolabrus celidotus and includes the chromosomes. The alternate haplotype sequences are in WGS project WOTM00000000. ##Genome-Assembly-Data-START## Assembly Date :: 08-NOV-2019 Assembly Method :: FALCON v. 2019-Jan-23patch1; FALCON-Unzip v. 2019-Jan-23patch1; purge_dups v. v1; scaff10x v. 4.1; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; longranger align v. 2.2.2; gEVAL manual curation v. 2019-11-08; VGP assembly pipeline individual v. 1.6 Polishing Method :: Arrow polishing and gap filling v. smrtlink_6.0.0.47841; freebayes Illumina polishing v. 1.3.1 Assembly Name :: fNotCel1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 71.06x Sequencing Technology :: PacBio Sequel I CLR; llumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..468 /organism="Notolabrus celidotus" /mol_type="genomic DNA" /isolate="fNotCel1" /db_xref="taxon:1203425" /sex="male" /tissue_type="liver" /dev_stage="adult" /country="New Zealand: Tauranga" /lat_lon="37.39219 S 176.09222 E" /collection_date="24-May-2018" /collected_by="Simon Muncaster, Erica Todd, Neil Gemmell" WGS WOTL01000001-WOTL01000468 // LOCUS VUNT01000000 18761 rc DNA linear INV 16-DEC-2019 DEFINITION Campodea augens isolate MM-2018, whole genome shotgun sequencing project. ACCESSION VUNT00000000 VERSION VUNT00000000.1 DBLINK BioProject: PRJNA416902 BioSample: SAMN07967199 KEYWORDS WGS. SOURCE Campodea augens ORGANISM Campodea augens Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Diplura; Rhabdura; Campodeoidea; Campodeidae; Campodea. REFERENCE 1 (bases 1 to 18761) AUTHORS Manni,M., Simao,F.A., Robertson,H.M., Gabaglio,M.A., Waterhouse,R.M., Misof,B., Niehuis,O., Szucsich,N.U. and Zdobnov,E.M. TITLE The genome of the blind soil-dwelling and ancestrally wingless dipluran Campodea augens, a key reference hexapod for studying the emergence of insect innovations JOURNAL Genome Biol Evol (2019) In press PUBMED 31778187 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 18761) AUTHORS Manni,M. TITLE Direct Submission JOURNAL Submitted (09-SEP-2019) Department of Genetic Medicine and Development, University of Geneva, Rue Michel-Servet 1, Geneva 1206, Switzerland COMMENT The Campodea augens whole genome shotgun (WGS) project has the project accession VUNT00000000. This version of the project (01) has the accession number VUNT01000000, and consists of sequences VUNT01000001-VUNT01018761. ##Genome-Assembly-Data-START## Assembly Method :: Platanus v. 1.2.4 Assembly Name :: UGE_Caugens_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 90.0x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..18761 /organism="Campodea augens" /mol_type="genomic DNA" /isolate="MM-2018" /isolation_source="Pool of two female individuals" /db_xref="taxon:438502" /sex="female" /tissue_type="Whole body" /country="Austria: Rekawinkel, Forsthausstrasse Loc. 2" /lat_lon="48.1851889 N 16.0247167 E" /collection_date="22-Jun-2013" /identified_by="Daniela Bartel, Nikolaus Szucsich" WGS VUNT01000001-VUNT01018761 // LOCUS BFAA01000000 458049 rc DNA linear VRT 09-NOV-2018 DEFINITION Scyliorhinus torazame, whole genome shotgun sequencing project. ACCESSION BFAA00000000 VERSION BFAA00000000.1 DBLINK BioProject: PRJDB6260 BioSample: SAMD00098918 Sequence Read Archive: DRR111848, DRR111849, DRR111850, DRR111851, DRR111852, DRR111853, DRR111854, DRR111855, DRR111856, DRR111857, DRR111858, DRR111859, DRR111860, DRR111861, DRR111862, DRR111863, DRR111864, DRR111865, DRR111866, DRR111867, DRR111868, DRR111869, DRR111870, DRR111871 KEYWORDS WGS; STANDARD_DRAFT. SOURCE Scyliorhinus torazame (cloudy catshark) ORGANISM Scyliorhinus torazame Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Carcharhiniformes; Scyliorhinidae; Scyliorhinus. REFERENCE 1 AUTHORS Hara,Y., Yamaguchi,K., Onimaru,K., Kadota,M., Koyanagi,M., Keeley,S.D., Tatsumi,K., Tanaka,K., Motone,F., Kageyama,Y., Nozu,R., Adachi,N., Nishimura,O., Nakagawa,R., Tanegashima,C., Kiyatake,I., Matsumoto,R., Murakumo,K., Nishida,K., Terakita,A., Kuratani,S., Sato,K., Hyodo,S. and Kuraku,S. TITLE Shark genomes provide insights into elasmobranch evolution and the origin of vertebrates JOURNAL Nat Ecol Evol 2 (11), 1761-1771 (2018) PUBMED 30297745 REMARK DOI:10.1038/s41559-018-0673-5 REFERENCE 2 (bases 1 to 458049) AUTHORS Hara,Y. and Kuraku,S. TITLE Direct Submission JOURNAL Submitted (15-DEC-2017) Contact:Shigehiro Kuraku RIKEN, Laboratory for Phyloinformatics, BDR; 2-2-3 Minatojima-minami, Chuo-ku, Kobe, Hyogo 650-0047, Japan COMMENT The Scyliorhinus torazame whole genome shotgun (WGS) project has the project accession BFAA00000000. This version of the project (01) has the accession number BFAA01000000, and consists of sequences BFAA01000001-BFAA01458049. Gene annotation, coding nucleotide sequences, and amino acid sequences are available at our project web site. http://www.clst.riken.jp/phylo/genomes.html ##Genome-Assembly-Data-START## Assembly Method :: Platanus v. 1.2.1 Assembly Name :: Storazame_v1.0 Genome Coverage :: 68x Sequencing Technology :: Illumina HiSeq 1500, Illumina MiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..458049 /organism="Scyliorhinus torazame" /mol_type="genomic DNA" /db_xref="taxon:75743" WGS BFAA01000001-BFAA01458049 // LOCUS BEZZ01000000 280241 rc DNA linear VRT 09-NOV-2018 DEFINITION Chiloscyllium punctatum, whole genome shotgun sequencing project. ACCESSION BEZZ00000000 VERSION BEZZ00000000.1 DBLINK BioProject: PRJDB6260 BioSample: SAMD00098917 Sequence Read Archive: DRR111842, DRR111843, DRR111844, DRR111845, DRR111846, DRR111847 KEYWORDS WGS; STANDARD_DRAFT. SOURCE Chiloscyllium punctatum (brownbanded bambooshark) ORGANISM Chiloscyllium punctatum Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Orectolobiformes; Hemiscylliidae; Chiloscyllium. REFERENCE 1 AUTHORS Hara,Y., Yamaguchi,K., Onimaru,K., Kadota,M., Koyanagi,M., Keeley,S.D., Tatsumi,K., Tanaka,K., Motone,F., Kageyama,Y., Nozu,R., Adachi,N., Nishimura,O., Nakagawa,R., Tanegashima,C., Kiyatake,I., Matsumoto,R., Murakumo,K., Nishida,K., Terakita,A., Kuratani,S., Sato,K., Hyodo,S. and Kuraku,S. TITLE Shark genomes provide insights into elasmobranch evolution and the origin of vertebrates JOURNAL Nat Ecol Evol 2 (11), 1761-1771 (2018) PUBMED 30297745 REMARK DOI:10.1038/s41559-018-0673-5 REFERENCE 2 (bases 1 to 280241) AUTHORS Hara,Y. and Kuraku,S. TITLE Direct Submission JOURNAL Submitted (15-DEC-2017) Contact:Shigehiro Kuraku RIKEN, Laboratory for Phyloinformatics, BDR; 2-2-3 Minatojima-minami, Chuo-ku, Kobe, Hyogo 650-0047, Japan COMMENT The Chiloscyllium punctatum whole genome shotgun (WGS) project has the project accession BEZZ00000000. This version of the project (01) has the accession number BEZZ01000000, and consists of sequences BEZZ01000001-BEZZ01280241. Gene annotation, coding nucleotide sequences, and amino acid sequences are available at our project web site. http://www.clst.riken.jp/phylo/genomes.html ##Genome-Assembly-Data-START## Assembly Method :: Platanus v. 1.2.1 Assembly Name :: Cpunctatum_v1.0 Genome Coverage :: 45x Sequencing Technology :: Illumina HiSeq 1500 ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..280241 /organism="Chiloscyllium punctatum" /mol_type="genomic DNA" /db_xref="taxon:137246" WGS BEZZ01000001-BEZZ01280241 // LOCUS CACRWF010000000 8506 rc DNA linear MAM 06-DEC-2019 DEFINITION Lutra lutra, whole genome shotgun sequencing project. ACCESSION CACRWF000000000 VERSION CACRWF000000000.1 DBLINK BioProject: PRJEB35338 BioSample: SAMEA994731 KEYWORDS WGS. SOURCE Lutra lutra (Eurasian river otter) ORGANISM Lutra lutra Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Mustelidae; Lutrinae; Lutra. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (12-NOV-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Lutra lutra whole genome shotgun (WGS) project has the project accession CACRWF000000000. This version of the project (01) has the accession number CACRWF010000000, and consists of sequences CACRWF010000001-CACRWF010008506. The assembly mLutLut1.1 is based on 63x PacBio data, 58x 10X Genomics Chromium data, BioNano data and 17x Hi-C data generated at the Baylor College of Medicine. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with Purge Haplotigs, 10X based scaffolding with scaff10x, Hi-C based scaffolding and improvement by the Aiden lab as part of a collaboration with DNA Zoo using 3D-DNA and Juicebox, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..8506 /organism="Lutra lutra" /mol_type="genomic DNA" /db_xref="taxon:9657" WGS CACRWF010000001-CACRWF010008506 // LOCUS CACRWE010000000 3964 rc DNA linear INV 02-DEC-2019 DEFINITION Pecten maximus, whole genome shotgun sequencing project. ACCESSION CACRWE000000000 VERSION CACRWE000000000.1 DBLINK BioProject: PRJEB35330 BioSample: SAMEA994736 KEYWORDS WGS. SOURCE Pecten maximus ORGANISM Pecten maximus Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Pectinida; Pectinoidea; Pectinidae; Pecten. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (12-NOV-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Pecten maximus whole genome shotgun (WGS) project has the project accession CACRWE000000000. This version of the project (01) has the accession number CACRWE010000000, and consists of sequences CACRWE010000001-CACRWE010003964. The assembly xPecMax1.1 is based on 54x PacBio data and 58x 10X Genomics Chromium data generated at the Wellcome Sanger Institute, and 79x Hi-C data generated at the Baylor College of Medicine. The assembly process included the following sequence of steps: initial PacBio assembly generation with wtdbg2, retained haplotig identification with purge_dups, 10X based scaffolding with scaff10x, Hi-C based scaffolding and improvement by the Aiden lab as part of a collaboration with DNA Zoo using 3D-DNA and Juicebox, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..3964 /organism="Pecten maximus" /mol_type="genomic DNA" /db_xref="taxon:6579" WGS CACRWE010000001-CACRWE010003964 // LOCUS CACRVO010000000 4 rc DNA linear INV 02-DEC-2019 DEFINITION Pecten maximus, whole genome shotgun sequencing project. ACCESSION CACRVO000000000 VERSION CACRVO000000000.1 DBLINK BioProject: PRJEB35329 BioSample: SAMEA994736 KEYWORDS WGS. SOURCE Pecten maximus ORGANISM Pecten maximus Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Pectinida; Pectinoidea; Pectinidae; Pecten. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (12-NOV-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Pecten maximus whole genome shotgun (WGS) project has the project accession CACRVO000000000. This version of the project (01) has the accession number CACRVO010000000, and consists of sequences CACRVO010000001-CACRVO010000004. The assembly xPecMax1.1 is based on 54x PacBio data and 58x 10X Genomics Chromium data generated at the Wellcome Sanger Institute, and 79x Hi-C data generated at the Baylor College of Medicine. The assembly process included the following sequence of steps: initial PacBio assembly generation with wtdbg2, retained haplotig identification with purge_dups, 10X based scaffolding with scaff10x, Hi-C based scaffolding and improvement by the Aiden lab as part of a collaboration with DNA Zoo using 3D-DNA and Juicebox, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..4 /organism="Pecten maximus" /mol_type="genomic DNA" /db_xref="taxon:6579" WGS CACRVO010000001-CACRVO010000004 // LOCUS CABVOX010000000 19579 rc DNA linear VRT 02-DEC-2019 DEFINITION Thalassophryne amazonica, whole genome shotgun sequencing project. ACCESSION CABVOX000000000 VERSION CABVOX000000000.1 DBLINK BioProject: PRJEB34605 BioSample: SAMEA104129913 KEYWORDS WGS. SOURCE Thalassophryne amazonica ORGANISM Thalassophryne amazonica Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Batrachoidaria; Batrachoididae; Thalassophryne. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (26-SEP-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Thalassophryne amazonica whole genome shotgun (WGS) project has the project accession CABVOX000000000. This version of the project (01) has the accession number CABVOX010000000, and consists of sequences CABVOX010000001-CABVOX010019579. The assembly fThaAma1.1 is based on 67x PacBio data, 48x 10X Genomics Chromium data, BioNano data and 13x Arima Hi-C data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with purge_dups, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..19579 /organism="Thalassophryne amazonica" /mol_type="genomic DNA" /db_xref="taxon:390379" WGS CABVOX010000001-CABVOX010019579 // LOCUS CABVOY010000000 441 rc DNA linear VRT 02-DEC-2019 DEFINITION Thalassophryne amazonica, whole genome shotgun sequencing project. ACCESSION CABVOY000000000 VERSION CABVOY000000000.1 DBLINK BioProject: PRJEB34606 BioSample: SAMEA104129913 KEYWORDS WGS. SOURCE Thalassophryne amazonica ORGANISM Thalassophryne amazonica Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Batrachoidaria; Batrachoididae; Thalassophryne. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (26-SEP-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Thalassophryne amazonica whole genome shotgun (WGS) project has the project accession CABVOY000000000. This version of the project (01) has the accession number CABVOY010000000, and consists of sequences CABVOY010000001-CABVOY010000441. The assembly fThaAma1.1 is based on 67x PacBio data, 48x 10X Genomics Chromium data, BioNano data and 13x Arima Hi-C data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with purge_dups, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..441 /organism="Thalassophryne amazonica" /mol_type="genomic DNA" /db_xref="taxon:390379" WGS CABVOY010000001-CABVOY010000441 // LOCUS CABPRR010000000 9650 rc DNA linear VRT 02-DEC-2019 DEFINITION Geotrypetes seraphini, whole genome shotgun sequencing project. ACCESSION CABPRR000000000 VERSION CABPRR000000000.1 DBLINK BioProject: PRJEB33991 BioSample: SAMEA104387963 KEYWORDS WGS. SOURCE Geotrypetes seraphini ORGANISM Geotrypetes seraphini Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Geotrypetes. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (13-AUG-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Geotrypetes seraphini whole genome shotgun (WGS) project has the project accession CABPRR000000000. This version of the project (01) has the accession number CABPRR010000000, and consists of sequences CABPRR010000001-CABPRR010009650. The assembly aGeoSer1.1 is based on 67x PacBio data, 28x 10X Genomics Chromium data, BioNano data and 20x Dovetail Hi-C data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with purge_dups, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..9650 /organism="Geotrypetes seraphini" /mol_type="genomic DNA" /db_xref="taxon:260995" WGS CABPRR010000001-CABPRR010009650 // LOCUS CABPRO010000000 3969 rc DNA linear INV 02-DEC-2019 DEFINITION Asterias rubens, whole genome shotgun sequencing project. ACCESSION CABPRO000000000 VERSION CABPRO000000000.1 DBLINK BioProject: PRJEB33973 BioSample: SAMEA994741 KEYWORDS WGS. SOURCE Asterias rubens (European starfish) ORGANISM Asterias rubens Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Asterozoa; Asteroidea; Forcipulatacea; Forcipulatida; Asteriidae; Asterias. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (12-AUG-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Asterias rubens whole genome shotgun (WGS) project has the project accession CABPRO000000000. This version of the project (01) has the accession number CABPRO010000000, and consists of sequences CABPRO010000001-CABPRO010003969. The assembly eAstRub1.2 is based on 103x PacBio data, 150x Illumina data, and 126x Dovetail Hi-C data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with purge_dups, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..3969 /organism="Asterias rubens" /mol_type="genomic DNA" /db_xref="taxon:7604" WGS CABPRO010000001-CABPRO010003969 // LOCUS CABHMB010000000 3592 rc DNA linear VRT 02-DEC-2019 DEFINITION Gadus morhua, whole genome shotgun sequencing project. ACCESSION CABHMB000000000 VERSION CABHMB000000000.1 DBLINK BioProject: PRJEB33454 BioSample: SAMEA5574046 KEYWORDS WGS. SOURCE Gadus morhua (Atlantic cod) ORGANISM Gadus morhua Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (10-JUL-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Gadus morhua whole genome shotgun (WGS) project has the project accession CABHMB000000000. This version of the project (01) has the accession number CABHMB010000000, and consists of sequences CABHMB010000001-CABHMB010003592. The assembly gadMor3.0 of individual fGadMor1 (SAMEA5574046) is based on 83x PacBio data generated at the Wellcome Sanger Institute and the Jakobsen lab at the University of Olso in Norway, 59x 10X Genomics Chromium data and BioNano data generated at the Wellcome Sanger Institute, as well as 76x Arima Hi-C data generated at the Jakobsen lab. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with purge_dups, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds were named based on a genetic map provided by the Jakobsen lab. FEATURES Location/Qualifiers source 1..3592 /organism="Gadus morhua" /mol_type="genomic DNA" /db_xref="taxon:8049" WGS CABHMB010000001-CABHMB010003592 // LOCUS CABHMC010000000 203 rc DNA linear VRT 02-DEC-2019 DEFINITION Gadus morhua, whole genome shotgun sequencing project. ACCESSION CABHMC000000000 VERSION CABHMC000000000.1 DBLINK BioProject: PRJEB33455 BioSample: SAMEA5574046 KEYWORDS WGS. SOURCE Gadus morhua (Atlantic cod) ORGANISM Gadus morhua Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (10-JUL-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Gadus morhua whole genome shotgun (WGS) project has the project accession CABHMC000000000. This version of the project (01) has the accession number CABHMC010000000, and consists of sequences CABHMC010000001-CABHMC010000203. The assembly gadMor3.0 of individual fGadMor1 (SAMEA5574046) is based on 83x PacBio data generated at the Wellcome Sanger Institute and the Jakobsen lab at the University of Olso in Norway, 59x 10X Genomics Chromium data and BioNano data generated at the Wellcome Sanger Institute, as well as 76x Arima Hi-C data generated at the Jakobsen lab. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with purge_dups, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds were named based on a genetic map provided by the Jakobsen lab. FEATURES Location/Qualifiers source 1..203 /organism="Gadus morhua" /mol_type="genomic DNA" /db_xref="taxon:8049" WGS CABHMC010000001-CABHMC010000203 // LOCUS CABFVP010000000 2193 rc DNA linear VRT 02-DEC-2019 DEFINITION Myripristis murdjan, whole genome shotgun sequencing project. ACCESSION CABFVP000000000 VERSION CABFVP000000000.1 DBLINK BioProject: PRJEB33187 BioSample: SAMEA4872133 KEYWORDS WGS. SOURCE Myripristis murdjan (pinecone soldierfish) ORGANISM Myripristis murdjan Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Holocentriformes; Holocentridae; Myripristis. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (25-JUN-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Myripristis murdjan whole genome shotgun (WGS) project has the project accession CABFVP000000000. This version of the project (01) has the accession number CABFVP010000000, and consists of sequences CABFVP010000001-CABFVP010002193. The assembly fMyrMur1.1 is based on 45x PacBio data, 89x coverage 10X Genomics Chromium data, BioNano data and 39x coverage Arima Hi-C data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with purge_dups, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds are named by synteny to medaka. FEATURES Location/Qualifiers source 1..2193 /organism="Myripristis murdjan" /mol_type="genomic DNA" /db_xref="taxon:586833" WGS CABFVP010000001-CABFVP010002193 // LOCUS CABFVW010000000 63 rc DNA linear VRT 02-DEC-2019 DEFINITION Myripristis murdjan, whole genome shotgun sequencing project. ACCESSION CABFVW000000000 VERSION CABFVW000000000.1 DBLINK BioProject: PRJEB33188 BioSample: SAMEA4872133 KEYWORDS WGS. SOURCE Myripristis murdjan (pinecone soldierfish) ORGANISM Myripristis murdjan Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Holocentriformes; Holocentridae; Myripristis. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (26-JUN-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Myripristis murdjan whole genome shotgun (WGS) project has the project accession CABFVW000000000. This version of the project (01) has the accession number CABFVW010000000, and consists of sequences CABFVW010000001-CABFVW010000063. The assembly fMyrMur1.1 is based on 45x PacBio data, 89x coverage 10X Genomics Chromium data, BioNano data and 39x coverage Arima Hi-C data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with purge_dups, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds are named by synteny to medaka. FEATURES Location/Qualifiers source 1..63 /organism="Myripristis murdjan" /mol_type="genomic DNA" /db_xref="taxon:586833" WGS CABFVW010000001-CABFVW010000063 // LOCUS CACRXG010000000 9508 rc DNA linear ROD 22-NOV-2019 DEFINITION Sciurus carolinensis, whole genome shotgun sequencing project. ACCESSION CACRXG000000000 VERSION CACRXG000000000.1 DBLINK BioProject: PRJEB35385 BioSample: SAMEA994726 KEYWORDS WGS. SOURCE Sciurus carolinensis (gray squirrel) ORGANISM Sciurus carolinensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Sciurinae; Sciurini; Sciurus. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (14-NOV-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Sciurus carolinensis whole genome shotgun (WGS) project has the project accession CACRXG000000000. This version of the project (01) has the accession number CACRXG010000000, and consists of sequences CACRXG010000001-CACRXG010009508. The assembly mSciCar1.1 is based on 74x PacBio data, 40x 10X Genomics Chromium data, and 42x Dovetail Hi-C data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with purge_dups, 10X based scaffolding with scaff10x, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Since Hi-C data were sparse, curation was aided by synteny with the assembly for Sciurus vulgaris simultaneously being curated by the Wellcome Sanger Institute. Chromosome-scale scaffolds confirmed by the Hi-C data and synteny have been named in order of size. FEATURES Location/Qualifiers source 1..9508 /organism="Sciurus carolinensis" /mol_type="genomic DNA" /db_xref="taxon:30640" WGS CACRXG010000001-CACRXG010009508 // LOCUS CACRXH010000000 10655 rc DNA linear ROD 22-NOV-2019 DEFINITION Sciurus vulgaris, whole genome shotgun sequencing project. ACCESSION CACRXH000000000 VERSION CACRXH000000000.1 DBLINK BioProject: PRJEB35379 BioSample: SAMEA994733 KEYWORDS WGS. SOURCE Sciurus vulgaris (Eurasian red squirrel) ORGANISM Sciurus vulgaris Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Sciurinae; Sciurini; Sciurus. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (14-NOV-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Sciurus vulgaris whole genome shotgun (WGS) project has the project accession CACRXH000000000. This version of the project (01) has the accession number CACRXH010000000, and consists of sequences CACRXH010000001-CACRXH010010655. The assembly mSciVul1.1 is based on 23x PacBio data and 44x 10X Genomics Chromium data generated at the Wellcome Sanger Institute, BioNano data generated at the Rockefeller University Vertebrate Genome Laboratory, and 17x Hi-C data generated at the Baylor College of Medicine. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with purge_dups, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, Hi-C based scaffolding and improvement by the Aiden lab as part of a collaboration with DNA Zoo using 3D-DNA and Juicebox, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..10655 /organism="Sciurus vulgaris" /mol_type="genomic DNA" /db_xref="taxon:55149" WGS CACRXH010000001-CACRXH010010655 // LOCUS AEKZ01000000 19341 rc DNA linear INV 21-NOV-2019 DEFINITION Apis florea, whole genome shotgun sequencing project. ACCESSION AEKZ00000000 VERSION AEKZ00000000.1 DBLINK BioProject: PRJNA45871 BioSample: SAMN00009081 KEYWORDS WGS. SOURCE Apis florea (little honeybee) ORGANISM Apis florea Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Apidae; Apis. REFERENCE 1 (bases 1 to 19341) AUTHORS Qu,J., Richards,S., Aqrawi,P., Blankenburg,K., Chen,D., Goodspeed,R., Gross,S., Holder,M., Jackson,L., Javaid,M., Joshi,V., Kovar,C., Lee,S., Mandapat,C., Mata,R., Mathew,T., Ngo,R., Nguyen,L., Nguyen,N., Okwuonu,G., Ongeri,F., Pham,C., Reid,J.G., Rio Deiros,D., Santibanez,J., Wang,M., Wu,Y.-Q., Scherer,S., Newsham,I., Worley,K.C., Muzny,D.M. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (18-NOV-2010) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA COMMENT The Apis florea whole genome shotgun (WGS) project has the project accession AEKZ00000000. This version of the project (01) has the accession number AEKZ01000000, and consists of sequences AEKZ01000001-AEKZ01019341. Contact ncbi-contacts@bcm.tmc.edu for more information. The DNA source was a single haploid drone (#6) for the 3kb library and a pool of three haploid drones (#3, 5, 8) for the 8kb library. All from Gene Robinson, University of Illinois. Aflo_1.0 was created with 454 Newbler assembler v. 2.3-PreRelease-10/19/2009 for the shotgun sequences, followed by local re-assembly with additional unassembled mate-pairs using Phrap to close additional gaps. In November 2019 1925 contigs and their corresponding scaffolds were suppressed because they were found to be contaminants, and the assembly was updated to Aflo_1.1, GCA_000184785.2. ##Genome-Assembly-Data-START## Assembly Method :: Newbler v. 2.3-PreRelease-10/19/2009 and Phrap Assembly Name :: Aflo_1.1 Genome Coverage :: 20.5x Sequencing Technology :: 454 ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..19341 /organism="Apis florea" /mol_type="genomic DNA" /db_xref="taxon:7463" /sex="male" /note="haploid drones" WGS AEKZ01000001-AEKZ01019341 WGS_SCAFLD GL575021-GL582965 // LOCUS JMDY03000000 76032 rc DNA linear INV 18-NOV-2019 DEFINITION Frankliniella occidentalis isolate FOCC.00, whole genome shotgun sequencing project. ACCESSION JMDY00000000 VERSION JMDY00000000.3 DBLINK BioProject: PRJNA203209 BioSample: SAMN02303501 KEYWORDS WGS. SOURCE Frankliniella occidentalis (western flower thrips) ORGANISM Frankliniella occidentalis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Thysanoptera; Terebrantia; Thripoidea; Thripidae; Frankliniella. REFERENCE 1 (bases 1 to 76032) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hernandez,B., Skinner,E., Javaid,M., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Hughes,D., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Frankliniella occidentalis isolate:FOCC.00 Genome sequencing JOURNAL Unpublished REFERENCE 2 (bases 1 to 76032) AUTHORS Qu,J., Murali,S.C., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R.D., Hernandez,B., Javaid,M., Jayaseelan,J.C., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Ongeri,F., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Richards,S., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (21-APR-2014) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA REFERENCE 3 (bases 1 to 76032) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hughes,D., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Osuji,N., Pu,L.-L., Puazo,M., Skinner,E., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (22-AUG-2019) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA COMMENT On Nov 12, 2019 this sequence version replaced JMDY00000000.2. The Frankliniella occidentalis whole genome shotgun (WGS) project has the project accession JMDY00000000. This version of the project (03) has the accession number JMDY03000000, and consists of sequences JMDY03000001-JMDY03076032. ##Genome-Assembly-Data-START## Assembly Date :: 2014 Assembly Method :: AllPaths LG v. 44620; Atlas Link v. 1.0; Atlas GapFill v. 2.2 Assembly Name :: Focc_3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 158.7x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..76032 /organism="Frankliniella occidentalis" /mol_type="genomic DNA" /isolate="FOCC.00" /isolation_source="specimen is the product of 10 generations of sibling-sibling breeding of a lab colony raised in Dorith Rotenberg's Lab at Kansas State University" /db_xref="taxon:133901" /tissue_type="whole organism" /note="original colony progenitor isolated in the Kamilo Iki valley on the island of Oahu, Hawaii" WGS JMDY03000001-JMDY03076032 WGS_SCAFLD ML762972-ML767122 WGS_SCAFLD ML767183-ML769294 // LOCUS WHPO01000000 106 rc DNA linear VRT 18-NOV-2019 DEFINITION Corvus moneduloides isolate bCorMon1, whole genome shotgun sequencing project. ACCESSION WHPO00000000 VERSION WHPO00000000.1 DBLINK BioProject: PRJNA560983 BioSample: SAMN12368441 KEYWORDS WGS. SOURCE Corvus moneduloides (New Caledonian crow) ORGANISM Corvus moneduloides Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Corvidae; Corvus. REFERENCE 1 (bases 1 to 106) AUTHORS Rutz,C., Fungtammasan,C., Mountcastle,J., Formenti,G., Chow,W., Howe,K., Steele,M.P., Fernandes,J., Gilbert,M.T.P., Fedrigo,O., Jarvis,E.D. and Gemmell,N. TITLE Corvus moneduloides (New Caledonian crow) genome, bCorMon1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 106) AUTHORS Rutz,C., Fungtammasan,C., Mountcastle,J., Formenti,G., Chow,W., Howe,K., Steele,M.P., Fernandes,J., Gilbert,M.T.P., Fedrigo,O., Jarvis,E.D. and Gemmell,N. TITLE Direct Submission JOURNAL Submitted (14-OCT-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Corvus moneduloides whole genome shotgun (WGS) project has the project accession WHPO00000000. This version of the project (01) has the accession number WHPO01000000, and consists of sequences WHPO01000001-WHPO01000106. The bCorMon1 primary assembly is based on the VGP 1.6 individual pipeline. Primary haplotype: Initial PacBio contig assembly with Falcon-unzip, Arrow polishing, retained haplotig identification with Purge Haplotigs, Arrow polishing and gap filling, and two rounds of FreeBayes polishing with Illumina short reads. Finally, the assembly was curated and chromosomes annotated using gEVAL #This assembly represents the principal haplotype of the diploid genome orvus moneduloides and includes the chromosomes. The alternate haplotype sequences are in WGS project WHPP00000000. ##Genome-Assembly-Data-START## Assembly Date :: 26-SEP-2019 Assembly Method :: FALCON v. 2018.31.08-03.06; FALCON-Unzip + Arrow v. 6.0.0.47841; purge_dups v. github ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b; Bionano solve v. 3.2.1_04122018; Salsa HiC v. 2.2; Arrow polishing + gap filling v. SMRTlink_6.0.0.47841; longranger alignment v. 2.2.2; freebayes polishing v. 1.3.1; gEVAL manual curation v. 26 SEP 2019; VGP assembly pipeline v. 1.6 Assembly Name :: bCorMon1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 62.08x Sequencing Technology :: PacBio Sequel I; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..106 /organism="Corvus moneduloides" /mol_type="genomic DNA" /isolate="bCorMon1" /db_xref="taxon:1196302" /sex="female" /tissue_type="blood" /country="New Caledonia: near Bourail" /lat_lon="21.599296 S 165.398128 E" /collection_date="17-Oct-2018" /collected_by="Matthew Steele" WGS WHPO01000001-WHPO01000106 WGS_SCAFLD CM018807-CM018842 WGS_SCAFLD CM018859 // LOCUS JMPT03000000 132305 rc DNA linear INV 13-NOV-2019 DEFINITION Halyomorpha halys isolate HHAL.00, whole genome shotgun sequencing project. ACCESSION JMPT00000000 VERSION JMPT00000000.3 DBLINK BioProject: PRJNA168118 BioSample: SAMN02737379 KEYWORDS WGS. SOURCE Halyomorpha halys (brown marmorated stink bug) ORGANISM Halyomorpha halys Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera; Panheteroptera; Pentatomomorpha; Pentatomoidea; Pentatomidae; Pentatominae; Halyomorpha. REFERENCE 1 (bases 1 to 132305) AUTHORS Richards,S. and Gundersen-Rindal,D.E. TITLE Whole genome sequencing of an invasive agricultural pest, the brown marmorated stink bug, Halyomorpha halys (Stal) JOURNAL Unpublished REFERENCE 2 (bases 1 to 132305) AUTHORS Murali,S.C., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R.D., Hernandez,B., Javaid,M., Jayaseelan,J.C., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Ongeri,F., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Richards,S., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (05-MAY-2014) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA REFERENCE 3 (bases 1 to 132305) AUTHORS Richards,S. and Gundersen-Rindal,D.E. TITLE Direct Submission JOURNAL Submitted (15-JUL-2019) National Agricultural Library, USDA-ARS, 2150 Centre Ave Bldg D, Fort Collins, CO 80526, USA COMMENT On Oct 15, 2019 this sequence version replaced JMPT00000000.2. The Halyomorpha halys whole genome shotgun (WGS) project has the project accession JMPT00000000. This version of the project (03) has the accession number JMPT03000000, and consists of sequences JMPT03000001-JMPT03132305. ##Genome-Assembly-Data-START## Assembly Date :: MAR-2013 Assembly Method :: AllPaths LG v. 44620; Atlas Link v. 1.0; Atlas GapFill v. 2.2 Assembly Name :: Hhal_1.1 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 113.7x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..132305 /organism="Halyomorpha halys" /mol_type="genomic DNA" /isolate="HHAL.00" /db_xref="taxon:286706" /sex="female" /tissue_type="whole organism" /note="undomesticated insect" WGS JMPT03000001-JMPT03132305 WGS_SCAFLD ML743812-ML755976 // LOCUS VMEC01000000 3309 rc DNA linear VRT 10-OCT-2019 DEFINITION Alca torda isolate 2006_11_07_Graehlm_vinge_78, whole genome shotgun sequencing project. ACCESSION VMEC00000000 VERSION VMEC00000000.1 DBLINK BioProject: PRJNA554521 BioSample: SAMN12292087 KEYWORDS WGS. SOURCE Alca torda (razorbill) ORGANISM Alca torda Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Alcidae; Alca. REFERENCE 1 (bases 1 to 3309) AUTHORS Gilbert,T., Fjeldsa,J., Rhie,A., Koren,S., Phillippy,A., Howe,K., Formenti,G., Fedrigo,O. and Jarvis,E.D. TITLE Alca torda (Razorbill) genome assembly, bAlcTor1, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 3309) AUTHORS Gilbert,T., Fjeldsa,J., Rhie,A., Koren,S., Phillippy,A., Howe,K., Formenti,G., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (22-JUL-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Alca torda whole genome shotgun (WGS) project has the project accession VMEC00000000. This version of the project (01) has the accession number VMEC01000000, and consists of sequences VMEC01000001-VMEC01003309. This assembly represents the alternate pseudohaplotype of the diploid genome Alca torda. The principal pseudohaplotype sequences are in WGS project VMED00000000. ##Genome-Assembly-Data-START## Assembly Date :: 18-JUN-2019 Assembly Method :: FALCON v. 5.1.1; FALCON-Unzip v. 1.0.2; purge_haplotigs v. bitbucket 7.10.2018; scaff10x v. 2.1; Bionano 2 enzyme v. 3.2.1; Salsa2 v. 2.2; longranger align v. 2.2.2; freebayes v. 1.2.0; gEVAL manual curation v. 2019-06-18; VGP standard assembly pipeline v. 1.5 Polishing Method :: Arrow v. 5.1.0.26412 Assembly Name :: bAlcTor1 alternate Diploid :: Alternate Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 64.69x Sequencing Technology :: PacBio Sequel; Illumina NovaSeq; 10X Genome; Arima Hi-C ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..3309 /organism="Alca torda" /mol_type="genomic DNA" /isolate="2006_11_07_Graehlm_vinge_78" /db_xref="taxon:28689" /sex="male" /tissue_type="muscle" /dev_stage="Chick" /country="Denmark: Graesholm Island" /lat_lon="55.2833 N 9.8 E" /collected_by="Jon Fjeldsa" WGS VMEC01000001-VMEC01003309 // LOCUS VMED01000000 95 rc DNA linear VRT 10-OCT-2019 DEFINITION Alca torda isolate 2006_11_07_Graehlm_vinge_78, whole genome shotgun sequencing project. ACCESSION VMED00000000 VERSION VMED00000000.1 DBLINK BioProject: PRJNA554520 BioSample: SAMN12292087 KEYWORDS WGS. SOURCE Alca torda (razorbill) ORGANISM Alca torda Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Charadriiformes; Alcidae; Alca. REFERENCE 1 (bases 1 to 95) AUTHORS Gilbert,T., Fjeldsa,J., Rhie,A., Koren,S., Phillippy,A., Howe,K., Formenti,G., Fedrigo,O. and Jarvis,E.D. TITLE Alca torda (Razorbill) genome assembly, bAlcTor1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 95) AUTHORS Gilbert,T., Fjeldsa,J., Rhie,A., Koren,S., Phillippy,A., Howe,K., Formenti,G., Fedrigo,O. and Jarvis,E.D. TITLE Direct Submission JOURNAL Submitted (22-JUL-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Alca torda whole genome shotgun (WGS) project has the project accession VMED00000000. This version of the project (01) has the accession number VMED01000000, and consists of sequences VMED01000001-VMED01000095. This assembly represents the principal pseudohaplotype of the diploid genome Alca torda and includes the chromosomes. The alternate pseudohaplotype sequences are in WGS project VMEC00000000. ##Genome-Assembly-Data-START## Assembly Date :: 18-JUN-2019 Assembly Method :: FALCON v. 5.1.1; FALCON-Unzip v. 1.0.2; purge_haplotigs v. bitbucket 7.10.2018; scaff10x v. 2.1; Bionano 2 enzyme v. 3.2.1; Salsa2 v. 2.2; longranger align v. 2.2.2; freebayes v. 1.2.0; gEVAL manual curation v. 2019-06-18; VGP standard assembly pipeline v. 1.5 Polishing Method :: Arrow v. 5.1.0.26412 Assembly Name :: bAlcTor1 primary Diploid :: Principal Pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 64.69x Sequencing Technology :: PacBio Sequel; Illumina NovaSeq; 10X Genome; Arima Hi-C ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..95 /organism="Alca torda" /mol_type="genomic DNA" /isolate="2006_11_07_Graehlm_vinge_78" /db_xref="taxon:28689" /sex="male" /tissue_type="muscle" /dev_stage="Chick" /country="Denmark: Graesholm Island" /lat_lon="55.2833 N 9.8 E" /collected_by="Jon Fjeldsa" WGS VMED01000001-VMED01000095 WGS_SCAFLD CM018076-CM018102 // LOCUS VOSU01000000 65 rc DNA linear MAM 26-SEP-2019 DEFINITION Phocoena sinus isolate mPhoSin1, whole genome shotgun sequencing project. ACCESSION VOSU00000000 VERSION VOSU00000000.1 DBLINK BioProject: PRJNA557831 BioSample: SAMN12325353 KEYWORDS WGS. SOURCE Phocoena sinus (vaquita) ORGANISM Phocoena sinus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Phocoena. REFERENCE 1 (bases 1 to 65) AUTHORS Morin,P., Mountcastle,J., Fungtammasan,C., Rhie,A., Rojas-Bracho,L., Smith,C.R., Taylor,B.L., Gulland,F.M.D., Musser,W., Houck,M., Haase,B., Paez,S., Howe,K., Torrance,J., Formenti,G., Phillippy,A., Ryder,O., Jarvis,E.D. and Fedrigo,O. TITLE Phocoena sinus (Vaquita) genome, mPhoSin1, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 65) AUTHORS Morin,P., Mountcastle,J., Fungtammasan,C., Rhie,A., Rojas-Bracho,L., Smith,C.R., Taylor,B.L., Gulland,F.M.D., Musser,W., Houck,M., Haase,B., Paez,S., Howe,K., Torrance,J., Formenti,G., Phillippy,A., Ryder,O., Jarvis,E.D. and Fedrigo,O. TITLE Direct Submission JOURNAL Submitted (05-AUG-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Phocoena sinus whole genome shotgun (WGS) project has the project accession VOSU00000000. This version of the project (01) has the accession number VOSU01000000, and consists of sequences VOSU01000001-VOSU01000065. This assembly represents the principal haplotype of the diploid genome Phocoena sinus and includes the chromosomes. The alternate haplotype sequences are in WGS project VOSV00000000. ##Genome-Assembly-Data-START## Assembly Date :: 23-JUL-2019 Assembly Method :: FALCON v. 5.1.1; FALCON-Unzip v. 1.0.2; Arrow smrtanalysis Pacbio polishing v. 6.0.0.47841; purge_haplotigs v. 1.0.4; scaff10X v. 4.1; Bionano solve DLS v. 3.3_10252018; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.2.0; gEVAL manual curation v. 2019-07-23; VGP assembly pipeline individual v. 1.5 Assembly Name :: mPhoSin1.pri Diploid :: Principal pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 67.26x Sequencing Technology :: PacBio Sequel I; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLE-1 ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..65 /organism="Phocoena sinus" /mol_type="genomic DNA" /isolate="mPhoSin1" /db_xref="taxon:42100" /sex="female" /tissue_type="Cultured fibroblasts (kidney)" /country="Mexico: San Felipe, Baja California" /lat_lon="31.103595 N 114.679383 W" /collection_date="04-Nov-2017" /collected_by="Frances Gulland" WGS VOSU01000001-VOSU01000065 WGS_SCAFLD CM018156-CM018178 // LOCUS VOSV01000000 9469 rc DNA linear MAM 24-SEP-2019 DEFINITION Phocoena sinus isolate mPhoSin1, whole genome shotgun sequencing project. ACCESSION VOSV00000000 VERSION VOSV00000000.1 DBLINK BioProject: PRJNA557832 BioSample: SAMN12325353 KEYWORDS WGS. SOURCE Phocoena sinus (vaquita) ORGANISM Phocoena sinus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Phocoena. REFERENCE 1 (bases 1 to 9469) AUTHORS Jarvis,P., Mountcastle,J., Fungtammasan,C., Rhie,A., Rojas-Bracho,L., Smith,C.R., Taylor,B.L., Gulland,F.M.D., Musser,W., Houck,M., Haase,B., Paez,S., Howe,K., Torrance,J., Formenti,G., Phillippy,A., Ryder,O., Jarvis,E.D. and Fedrigo,O. TITLE Phocoena sinus (Vaquita) genome, mPhoSin1, alterante haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 9469) AUTHORS Jarvis,P., Mountcastle,J., Fungtammasan,C., Rhie,A., Rojas-Bracho,L., Smith,C.R., Taylor,B.L., Gulland,F.M.D., Musser,W., Houck,M., Haase,B., Paez,S., Howe,K., Torrance,J., Formenti,G., Phillippy,A., Ryder,O., Jarvis,E.D. and Fedrigo,O. TITLE Direct Submission JOURNAL Submitted (05-AUG-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Phocoena sinus whole genome shotgun (WGS) project has the project accession VOSV00000000. This version of the project (01) has the accession number VOSV01000000, and consists of sequences VOSV01000001-VOSV01009469. This assembly represents the alternate haplotype of the diploid genome Phocoena sinus. The principal haplotype sequences are in WGS project VOSU00000000. ##Genome-Assembly-Data-START## Assembly Date :: 23-JUL-2019 Assembly Method :: FALCON v. 5.1.1; FALCON-Unzip v. 1.0.2; purge_haplotigs v. 1.0.4; Arrow smrtanalysis Pacbio polishing v. 6.0.0.47841; purge_haplotigs v. 1.0.4; Arrow smrtanalysis Pacbio polishing & gap filling v. 6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.2.0; gEVAL manual curation v. 2019-07-23; VGP assembly pipeline individual v. 1.5 Assembly Name :: mPhoSin1.alt Diploid :: Alternate pseudohaplotype Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 67.26x Sequencing Technology :: PacBio Sequel I; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..9469 /organism="Phocoena sinus" /mol_type="genomic DNA" /isolate="mPhoSin1" /db_xref="taxon:42100" /sex="female" /tissue_type="Cultured fibroblasts (kidney)" /country="Mexico: San Felipe, Baja California" /lat_lon="31.103595 N 114.679383 W" /collection_date="04-Nov-2017" /collected_by="Frances Gulland" WGS VOSV01000001-VOSV01009469 // LOCUS SAYX01000000 315647 rc DNA linear ROD 24-SEP-2019 DEFINITION Marmota vancouverensis isolate RANI-1049, whole genome shotgun sequencing project. ACCESSION SAYX00000000 VERSION SAYX00000000.1 DBLINK BioProject: PRJNA476112 BioSample: SAMN09425912 KEYWORDS WGS. SOURCE Marmota vancouverensis (Vancouver Island marmot) ORGANISM Marmota vancouverensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Marmota. REFERENCE 1 (bases 1 to 315647) AUTHORS Culibrk,L., Leelakumari,S., Taylor,G.A., Tse,K., Cheng,D., Chuah,E., Kirk,H., Pandoh,P., Troussard,A., Zhao,Y., Mungall,A., Moore,R., Marra,M.A. and Jones,S.J.M. TITLE The genome of the Vancouver Island Marmot (Marmota vancouverensis) JOURNAL Unpublished REFERENCE 2 (bases 1 to 315647) AUTHORS Culibrk,L., Leelakumari,S., Taylor,G.A., Tse,K., Cheng,D., Chuah,E., Kirk,H., Pandoh,P., Troussard,A., Zhao,Y., Mungall,A., Moore,R., Marra,M.A. and Jones,S.J.M. TITLE Direct Submission JOURNAL Submitted (08-JAN-2019) Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, 100 570 7th Ave, Vancouver, British Columbia V5Z 4S6, Canada COMMENT The Marmota vancouverensis whole genome shotgun (WGS) project has the project accession SAYX00000000. This version of the project (01) has the accession number SAYX01000000, and consists of sequences SAYX01000001-SAYX01315647. ##Genome-Assembly-Data-START## Assembly Date :: SEP-2018 Assembly Method :: Supernova v. 2.1.1 Assembly Name :: GSC_VIM_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 25.0x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..315647 /organism="Marmota vancouverensis" /mol_type="genomic DNA" /isolate="RANI-1049" /db_xref="taxon:93167" /sex="female" /tissue_type="liver" /dev_stage="adult" WGS SAYX01000001-SAYX01315647 WGS_SCAFLD ML554701-ML561813 // LOCUS JQDR03000000 18000 rc DNA linear INV 09-SEP-2019 DEFINITION Hyalella azteca isolate HAZT.00-mixed, whole genome shotgun sequencing project. ACCESSION JQDR00000000 VERSION JQDR00000000.3 DBLINK BioProject: PRJNA243935 BioSample: SAMN02978968 KEYWORDS WGS. SOURCE Hyalella azteca ORGANISM Hyalella azteca Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Peracarida; Amphipoda; Senticaudata; Talitrida; Talitroidea; Hyalellidae; Hyalella. REFERENCE 1 (bases 1 to 18000) AUTHORS Poynton,H.C., Hasenbein,S., Benoit,J.B., Sepulveda,M.S., Poelchau,M.F., Hughes,D.S.T., Murali,S.C., Chen,S., Glastad,K.M., Goodisman,M.A.D., Werren,J.H., Vineis,J.H., Bowen,J.L., Friedrich,M., Jones,J., Robertson,H.M., Feyereisen,R., Mechler-Hickson,A., Mathers,N., Lee,C.E., Colbourne,J.K., Biales,A., Johnston,J.S., Wellborn,G.A., Rosendale,A.J., Cridge,A.G., Munoz-Torres,M.C., Bain,P.A., Manny,A.R., Major,K.M., Lambert,F.N., Vulpe,C.D., Tuck,P., Blalock,B.J., Lin,Y.Y., Smith,M.E., Ochoa-Acuna,H., Chen,M.M., Childers,C.P., Qu,J., Dugan,S., Lee,S.L., Chao,H., Dinh,H., Han,Y., Doddapaneni,H., Worley,K.C., Muzny,D.M., Gibbs,R.A. and Richards,S. TITLE The Toxicogenome of Hyalella azteca: A Model for Sediment Ecotoxicology and Evolutionary Toxicology JOURNAL Environ. Sci. Technol. 52 (10), 6009-6022 (2018) PUBMED 29634279 REFERENCE 2 (bases 1 to 18000) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hughes,D., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Osuji,N., Pu,L.-L., Puazo,M., Skinner,E., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (18-AUG-2014) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA REFERENCE 3 (bases 1 to 18000) AUTHORS Poynton,C., Hasenbein,S., Benoit,J.B., Sepulveda,M.S., Poelchau,M.F., Murali,S.C., Chen,S., Glastad,K.M., Werren,J.H., Vineis,J.H., Bowen,J.L., Friedrich,M., Jones,J., Robertson,H.M., Feyereisen,R., Mechler-Hickson,A., Mathers,N., Lee,C.E., Colbourne,J.K., Biales,A., Johnston,J.S., Wellborn,G.A., Rosendale,A.J., Cridge,A.G., Munoz-Torres,M.C., Bain,P.A., Manny,A.R., Major,K.M., Lambert,F.N., Vulpe,C.D., Tuck,P., Blalock,B.J., Lin,Y.-Y., Smith,M.E., Ochoa-Acuna,H., Chen,M.-J.M., Childers,C.P., Qu,J., Dugan,S., Lee,S.L., Chao,H., Dinh,H., Han,Y., Doddapaneni,H., Worley,K.C., Muzny,D.M., Gibbs,R.A. and Richards,S. TITLE Direct Submission JOURNAL Submitted (10-JUN-2019) National Agricultural Library, USDA-ARS, 2150 Centre Ave Bldg D, Fort Collins, CO 80526, USA COMMENT On Sep 9, 2019 this sequence version replaced JQDR00000000.2. The Hyalella azteca whole genome shotgun (WGS) project has the project accession JQDR00000000. This version of the project (03) has the accession number JQDR03000000, and consists of sequences JQDR03000001-JQDR03018000. ##Genome-Assembly-Data-START## Assembly Date :: 20-JUL-2016 Assembly Method :: AllPathsLG v. 48744; Atlas Link v. 1.0; Atlas GapFill v. 2.2; Redundans v. 0.11b Assembly Name :: Hazt_2.0.1 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 105.0x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..18000 /organism="Hyalella azteca" /mol_type="genomic DNA" /isolate="HAZT.00-mixed" /db_xref="taxon:294128" /tissue_type="whole organism" WGS JQDR03000001-JQDR03018000 // LOCUS CABIVO010000000 1937 rc DNA linear VRT 12-AUG-2019 DEFINITION Chanos chanos, whole genome shotgun sequencing project. ACCESSION CABIVO000000000 VERSION CABIVO000000000.1 DBLINK BioProject: PRJEB33881 BioSample: SAMEA5159473 KEYWORDS WGS. SOURCE Chanos chanos (milkfish) ORGANISM Chanos chanos Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Gonorynchiformes; Chanidae; Chanos. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (06-AUG-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Chanos chanos whole genome shotgun (WGS) project has the project accession CABIVO000000000. This version of the project (01) has the accession number CABIVO010000000, and consists of sequences CABIVO010000001-CABIVO010001937. The assembly fChaCha1.1 is based on 68x PacBio data, 78x 10X Genomics Chromium data, BioNano data and 93x Dovetail Hi-C data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with Purge Dups, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..1937 /organism="Chanos chanos" /mol_type="genomic DNA" /db_xref="taxon:29144" WGS CABIVO010000001-CABIVO010001937 // LOCUS CABIVN010000000 14 rc DNA linear VRT 14-AUG-2019 DEFINITION Chanos chanos, whole genome shotgun sequencing project. ACCESSION CABIVN000000000 VERSION CABIVN000000000.1 DBLINK BioProject: PRJEB33882 BioSample: SAMEA5159473 KEYWORDS WGS. SOURCE Chanos chanos (milkfish) ORGANISM Chanos chanos Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Gonorynchiformes; Chanidae; Chanos. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (06-AUG-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Chanos chanos whole genome shotgun (WGS) project has the project accession CABIVN000000000. This version of the project (01) has the accession number CABIVN010000000, and consists of sequences CABIVN010000001-CABIVN010000014. The assembly fChaCha1.1 is based on 68x PacBio data, 78x 10X Genomics Chromium data, BioNano data and 93x Dovetail Hi-C data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with Purge Dups, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..14 /organism="Chanos chanos" /mol_type="genomic DNA" /db_xref="taxon:29144" WGS CABIVN010000001-CABIVN010000014 // LOCUS VMDQ010000000 1676240 rc DNA linear MAM 08-AUG-2019 DEFINITION Nycticeius humeralis isolate US023, whole genome shotgun sequencing project. ACCESSION VMDQ000000000 VERSION VMDQ000000000.1 DBLINK BioProject: PRJNA399355 BioSample: SAMN07678030 KEYWORDS WGS. SOURCE Nycticeius humeralis (evening bat) ORGANISM Nycticeius humeralis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Vespertilionidae; Nycticeius. REFERENCE 1 (bases 1 to 1676240) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1676240) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (22-JUL-2019) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Nycticeius humeralis whole genome shotgun (WGS) project has the project accession VMDQ000000000. This version of the project (01) has the accession number VMDQ010000000, and consists of sequences VMDQ010000001-VMDQ011676240. ##Genome-Assembly-Data-START## Assembly Method :: Discovar v. discovardenovo-52488 Assembly Name :: NycHum_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 41.7x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1676240 /organism="Nycticeius humeralis" /mol_type="genomic DNA" /isolate="US023" /db_xref="taxon:27670" /dev_stage="adult" WGS VMDQ010000001-VMDQ011676240 // LOCUS VMDR010000000 1128787 rc DNA linear MAM 08-AUG-2019 DEFINITION Macrotus californicus isolate US035, whole genome shotgun sequencing project. ACCESSION VMDR000000000 VERSION VMDR000000000.1 DBLINK BioProject: PRJNA399440 BioSample: SAMN07678130 KEYWORDS WGS. SOURCE Macrotus californicus (California big-eared bat) ORGANISM Macrotus californicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Phyllostomidae; Phyllostominae; Macrotus. REFERENCE 1 (bases 1 to 1128787) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1128787) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (19-JUL-2019) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Macrotus californicus whole genome shotgun (WGS) project has the project accession VMDR000000000. This version of the project (01) has the accession number VMDR010000000, and consists of sequences VMDR010000001-VMDR011128787. ##Genome-Assembly-Data-START## Assembly Method :: Discovar v. discovardenovo-52488 Assembly Name :: MacCal_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 47.7x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1128787 /organism="Macrotus californicus" /mol_type="genomic DNA" /isolate="US035" /db_xref="taxon:9419" /dev_stage="adult" WGS VMDR010000001-VMDR011128787 // LOCUS VMDP01000000 902551 rc DNA linear MAM 08-AUG-2019 DEFINITION Antrozous pallidus isolate US032, whole genome shotgun sequencing project. ACCESSION VMDP00000000 VERSION VMDP00000000.1 DBLINK BioProject: PRJNA399351 BioSample: SAMN07678034 KEYWORDS WGS. SOURCE Antrozous pallidus (pallid bat) ORGANISM Antrozous pallidus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Vespertilionidae; Antrozous. REFERENCE 1 (bases 1 to 902551) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 902551) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (19-JUL-2019) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Antrozous pallidus whole genome shotgun (WGS) project has the project accession VMDP00000000. This version of the project (01) has the accession number VMDP01000000, and consists of sequences VMDP01000001-VMDP01902551. ##Genome-Assembly-Data-START## Assembly Method :: Discovar v. discovardenovo-52488 Assembly Name :: AntPal_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 35.7x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..902551 /organism="Antrozous pallidus" /mol_type="genomic DNA" /isolate="US032" /db_xref="taxon:9440" /dev_stage="adult" WGS VMDP01000001-VMDP01902551 // LOCUS VMDO01000000 673563 rc DNA linear ROD 08-AUG-2019 DEFINITION Pedetes capensis isolate US022, whole genome shotgun sequencing project. ACCESSION VMDO00000000 VERSION VMDO00000000.1 DBLINK BioProject: PRJNA399412 BioSample: SAMN07678104 KEYWORDS WGS. SOURCE Pedetes capensis (springhare) ORGANISM Pedetes capensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Anomaluromorpha; Pedetidae; Pedetes. REFERENCE 1 (bases 1 to 673563) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 673563) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (19-JUL-2019) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Pedetes capensis whole genome shotgun (WGS) project has the project accession VMDO00000000. This version of the project (01) has the accession number VMDO01000000, and consists of sequences VMDO01000001-VMDO01673563. ##Genome-Assembly-Data-START## Assembly Method :: Discovar v. discovardenovo-52488 Assembly Name :: PedCap_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 39.7x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..673563 /organism="Pedetes capensis" /mol_type="genomic DNA" /isolate="US022" /db_xref="taxon:10023" /dev_stage="adult" WGS VMDO01000001-VMDO01673563 // LOCUS VMDN01000000 345321 rc DNA linear MAM 08-AUG-2019 DEFINITION Rhinolophus ferrumequinum isolate US033, whole genome shotgun sequencing project. ACCESSION VMDN00000000 VERSION VMDN00000000.1 DBLINK BioProject: PRJNA399429 BioSample: SAMN07678122 KEYWORDS WGS. SOURCE Rhinolophus ferrumequinum (greater horseshoe bat) ORGANISM Rhinolophus ferrumequinum Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Rhinolophidae; Rhinolophinae; Rhinolophus. REFERENCE 1 (bases 1 to 345321) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 345321) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (19-JUL-2019) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Rhinolophus ferrumequinum whole genome shotgun (WGS) project has the project accession VMDN00000000. This version of the project (01) has the accession number VMDN01000000, and consists of sequences VMDN01000001-VMDN01345321. ##Genome-Assembly-Data-START## Assembly Method :: Discovar v. discovardenovo-52488 Assembly Name :: RhiFer_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 39.7x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..345321 /organism="Rhinolophus ferrumequinum" /mol_type="genomic DNA" /isolate="US033" /db_xref="taxon:59479" /sex="female" /dev_stage="adult" WGS VMDN01000001-VMDN01345321 // LOCUS SBAQ01000000 24746 rc DNA linear MAM 05-AUG-2019 DEFINITION Eumetopias jubatus isolate GAN:26980396, whole genome shotgun sequencing project. ACCESSION SBAQ00000000 VERSION SBAQ00000000.1 DBLINK BioProject: PRJNA475770 BioSample: SAMN09402722 KEYWORDS WGS. SOURCE Eumetopias jubatus (Steller sea lion) ORGANISM Eumetopias jubatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Otariidae; Eumetopias. REFERENCE 1 (bases 1 to 24746) AUTHORS Kwan,H.H., Culibrk,L., Taylor,G.A., Leelakumari,S., Tan,R., Jackman,S.D., Tse,K., MacLeod,T., Cheng,D., Chuah,E., Kirk,H., Pandoh,P., Carlsen,R., Zhao,Y., Mungall,A.J., Moore,R., Birol,I., Marra,M.A., Rosen,D.A.S., Haulena,M. and Jones,S.J.M. TITLE The Genome of the Steller Sea Lion (Eumetopias jubatus) JOURNAL Genes (Basel) 10 (7), E486 (2019) PUBMED 31248052 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 24746) AUTHORS Kwan,H., Taylor,G.A., Leelakumari,S., Tan,R., Tse,K., Cheung,D., Chuah,E., Kirk,H., Pandoh,P., Carlsen,R., Zhao,Y., Mungall,A.J., Moore,R., Marra,M., Haulena,M. and Jones,S.J.M. TITLE Direct Submission JOURNAL Submitted (09-JAN-2019) Genome Sciences Centre, BC Cancer Agency, Canada's Michael Smith Genome Sciences Centre, #100 - 570 West 7th Ave, Vancouver, BC V5Z-4S6, Canada COMMENT The Eumetopias jubatus whole genome shotgun (WGS) project has the project accession SBAQ00000000. This version of the project (01) has the accession number SBAQ01000000, and consists of sequences SBAQ01000001-SBAQ01024746. ##Genome-Assembly-Data-START## Assembly Date :: JUN-2018 Assembly Method :: supernova v. 2.0.1 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 34.65x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..24746 /organism="Eumetopias jubatus" /mol_type="genomic DNA" /isolate="GAN:26980396" /db_xref="taxon:34886" /sex="female" /tissue_type="blood" /dev_stage="adult" WGS SBAQ01000001-SBAQ01024746 WGS_SCAFLD ML137718-ML138677 // LOCUS SSNK01000000 131786 rc DNA linear MAM 29-JUL-2019 DEFINITION Alces alces isolate MIG12-28694850, whole genome shotgun sequencing project. ACCESSION SSNK00000000 VERSION SSNK00000000.1 DBLINK BioProject: PRJNA526240 BioSample: SAMN11091360 KEYWORDS WGS. SOURCE Alces alces (Eurasian elk) ORGANISM Alces alces Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Cervidae; Odocoileinae; Alces. REFERENCE 1 (bases 1 to 131786) AUTHORS Culibrk,L., Leelakumari,S., Taylor,G., Tse,K., Cheng,D., Chuah,E., Kirk,H., Pandoh,P., Troussard,A., Zhao,Y., Mungall,A., Moore,R., Marra,M.A. and Jones,S.J.M. TITLE The genome of the Moose (Alces alces) JOURNAL Unpublished REFERENCE 2 (bases 1 to 131786) AUTHORS Culibrk,L., Leelakumari,S., Taylor,G., Tse,K., Cheng,D., Chuah,E., Kirk,H., Pandoh,P., Troussard,A., Zhao,Y., Mungall,A., Moore,R., Marra,M.A. and Jones,S.J.M. TITLE Direct Submission JOURNAL Submitted (10-APR-2019) Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, #100 570 7th Ave, Vancouver, British Columbia V5Z 4S6, Canada COMMENT The Alces alces whole genome shotgun (WGS) project has the project accession SSNK00000000. This version of the project (01) has the accession number SSNK01000000, and consists of sequences SSNK01000001-SSNK01131786. ##Genome-Assembly-Data-START## Assembly Date :: MAR-2019 Assembly Method :: Supernova v. 2.1.1 Assembly Name :: GSC_moose_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 35.0x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..131786 /organism="Alces alces" /mol_type="genomic DNA" /isolate="MIG12-28694850" /db_xref="taxon:9852" /sex="female" /tissue_type="blood" /dev_stage="adult" WGS SSNK01000001-SSNK01131786 WGS_SCAFLD ML664744-ML675514 // LOCUS SRVM01000000 48446 rc DNA linear MAM 29-JUL-2019 DEFINITION Antilocapra americana isolate GAN:MWC17-00274, whole genome shotgun sequencing project. ACCESSION SRVM00000000 VERSION SRVM00000000.1 DBLINK BioProject: PRJNA526246 BioSample: SAMN11091591 KEYWORDS WGS. SOURCE Antilocapra americana (pronghorn) ORGANISM Antilocapra americana Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Antilocapridae; Antilocapra. REFERENCE 1 (bases 1 to 48446) AUTHORS Culibrk,L., Leelakumari,S., Taylor,G.A., Tse,K., Cheng,D., Chuah,E., Kirk,H., Pandoh,P., Troussard,A., Zhao,Y., Mungall,A., Moore,R., Marra,M.A. and Jones,S.J.M. TITLE The genome of the Pronghorn (Antilocapra americana) JOURNAL Unpublished REFERENCE 2 (bases 1 to 48446) AUTHORS Culibrk,L., Leelakumari,S., Taylor,G.A., Tse,K., Cheng,D., Chuah,E., Kirk,H., Pandoh,P., Troussard,A., Zhao,Y., Mungall,A., Moore,R., Marra,M.A. and Jones,S.J.M. TITLE Direct Submission JOURNAL Submitted (05-APR-2019) Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, #100 570 7th Ave, Vancouver, British Columbia V5Z 4S6, Canada COMMENT The Antilocapra americana whole genome shotgun (WGS) project has the project accession SRVM00000000. This version of the project (01) has the accession number SRVM01000000, and consists of sequences SRVM01000001-SRVM01048446. ##Genome-Assembly-Data-START## Assembly Date :: MAR-2019 Assembly Method :: Supernova v. 2.1.1 Assembly Name :: GSC_phorn_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 40.0x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..48446 /organism="Antilocapra americana" /mol_type="genomic DNA" /isolate="GAN:MWC17-00274" /db_xref="taxon:9891" /sex="male" /tissue_type="blood" /dev_stage="adult" WGS SRVM01000001-SRVM01048446 WGS_SCAFLD ML660197-ML664743 // LOCUS AOMJ03000000 84235 rc DNA linear INV 23-JUL-2019 DEFINITION Parasteatoda tepidariorum strain Goettingen, whole genome shotgun sequencing project. ACCESSION AOMJ00000000 VERSION AOMJ00000000.3 DBLINK BioProject: PRJNA167405 BioSample: SAMN02364452 KEYWORDS WGS. SOURCE Parasteatoda tepidariorum (common house spider) ORGANISM Parasteatoda tepidariorum Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Araneae; Araneomorphae; Entelegynae; Araneoidea; Theridiidae; Parasteatoda. REFERENCE 1 (bases 1 to 84235) AUTHORS Schwager,E.E., Sharma,P.P., Clarke,T., Leite,D.J., Wierschin,T., Pechmann,M., Akiyama-Oda,Y., Esposito,L., Bechsgaard,J., Bilde,T., Buffry,A.D., Chao,H., Dinh,H., Doddapaneni,H., Dugan,S., Eibner,C., Extavour,C.G., Funch,P., Garb,J., Gonzalez,L.B., Gonzalez,V.L., Griffiths-Jones,S., Han,Y., Hayashi,C., Hilbrant,M., Hughes,D.S.T., Janssen,R., Lee,S.L., Maeso,I., Murali,S.C., Muzny,D.M., Nunes da Fonseca,R., Paese,C.L.B., Qu,J., Ronshaugen,M., Schomburg,C., Schonauer,A., Stollewerk,A., Torres-Oliva,M., Turetzek,N., Vanthournout,B., Werren,J.H., Wolff,C., Worley,K.C., Bucher,G., Gibbs,R.A., Coddington,J., Oda,H., Stanke,M., Ayoub,N.A., Prpic,N.M., Flot,J.F., Posnien,N., Richards,S. and McGregor,A.P. TITLE The house spider genome reveals an ancient whole-genome duplication during arachnid evolution JOURNAL BMC Biol. 15 (1), 62 (2017) PUBMED 28756775 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 84235) AUTHORS Richards,S., Qu,J., Jiang,H., Batterton,M.N., Blankenburg,K., Gubbala,S., Han,Y., Jayaseelan,J.C., Kalra,D., Kovar,C., Lee,S., Li,M., Mathew,T., Munidasa,M., Ongeri,F., Perales,L., Pu,L.-L., Saada,N., Thornton,R.L., Warner,C., Wu,Y.-Q., Zou,X., Scherer,S.E., Worley,K.C., Muzny,D.M. and Gibbs,R.A. TITLE Direct Submission JOURNAL Submitted (29-JAN-2013) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA REFERENCE 3 (bases 1 to 84235) AUTHORS Ayoub,N.A., Clarke,T., Coddington,J., Flot,J.-F., Gibbs,R.A., Gonzalez,V.L., Leite,D.J., Mcgregor,A.P., Posnien,N., Prpic,N.-M., Richards,S., Schomburg,C., Schwager,E., Sharma,P., Skinner,E., Stanke,M., Torres-Oliva,M. and Wierschin,T. TITLE Direct Submission JOURNAL Submitted (13-MAY-2019) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA COMMENT On Jun 14, 2019 this sequence version replaced AOMJ00000000.2. The Parasteatoda tepidariorum whole genome shotgun (WGS) project has the project accession AOMJ00000000. This version of the project (03) has the accession number AOMJ03000000, and consists of sequences AOMJ03000001-AOMJ03084235. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths v. 35218; ATLAS-link v. 1.0; ATLAS-gapfill v. 2.2; redundans v. 0.12c Assembly Name :: Ptep_3.0 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 96.9x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..84235 /organism="Parasteatoda tepidariorum" /mol_type="genomic DNA" /strain="Goettingen" /db_xref="taxon:114398" /country="Germany" /note="whole male and female organisms, starved for several weeks and cleaned externally before grinding" WGS AOMJ03000001-AOMJ03084235 WGS_SCAFLD ML632907-ML636797 // LOCUS PVJT020000000 1523781 rc DNA linear MAM 15-JUL-2019 DEFINITION Galeopterus variegatus isolate US047, whole genome shotgun sequencing project. ACCESSION PVJT000000000 VERSION PVJT000000000.2 DBLINK BioProject: PRJNA399345 BioSample: SAMN07678019 KEYWORDS WGS. SOURCE Galeopterus variegatus (Sunda flying lemur) ORGANISM Galeopterus variegatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Dermoptera; Cynocephalidae; Galeopterus. REFERENCE 1 (bases 1 to 1523781) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1523781) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA REFERENCE 3 (bases 1 to 1523781) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (23-MAR-2019) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT On Jul 15, 2019 this sequence version replaced PVJT000000000.1. The Galeopterus variegatus whole genome shotgun (WGS) project has the project accession PVJT000000000. This version of the project (02) has the accession number PVJT020000000, and consists of sequences PVJT020000001-PVJT021523781. ##Genome-Assembly-Data-START## Assembly Method :: Discovar de novo v. 52490 + Dovetail HiC Assembly Name :: GalVar_v2_BIUU_UCD Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 35.5x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1523781 /organism="Galeopterus variegatus" /mol_type="genomic DNA" /isolate="US047" /db_xref="taxon:482537" /dev_stage="adult" WGS PVJT020000001-PVJT021523781 // LOCUS PVIO02000000 826553 rc DNA linear MAM 15-JUL-2019 DEFINITION Procavia capensis isolate US060, whole genome shotgun sequencing project. ACCESSION PVIO00000000 VERSION PVIO00000000.2 DBLINK BioProject: PRJNA399414 BioSample: SAMN07678107 KEYWORDS WGS. SOURCE Procavia capensis (Cape rock hyrax) ORGANISM Procavia capensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Hyracoidea; Procaviidae; Procavia. REFERENCE 1 (bases 1 to 826553) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 826553) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA REFERENCE 3 (bases 1 to 826553) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (23-MAR-2019) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Procavia capensis whole genome shotgun (WGS) project has the project accession PVIO00000000. This version of the project (02) has the accession number PVIO02000000, and consists of sequences PVIO02000001-PVIO02826553. ##Genome-Assembly-Data-START## Assembly Method :: Discovar de novo v. 52494 + Dovetail HiC Assembly Name :: ProCapCap_v2_BIUU_UCD Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 23.3x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..826553 /organism="Procavia capensis" /mol_type="genomic DNA" /isolate="US060" /db_xref="taxon:9813" /dev_stage="adult" WGS PVIO02000001-PVIO02826553 // LOCUS PVJY020000000 1981226 rc DNA linear MAM 15-JUL-2019 DEFINITION Diceros bicornis isolate BS38, whole genome shotgun sequencing project. ACCESSION PVJY000000000 VERSION PVJY000000000.2 DBLINK BioProject: PRJNA399388 BioSample: SAMN07678078 KEYWORDS WGS. SOURCE Diceros bicornis (black rhinoceros) ORGANISM Diceros bicornis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Rhinocerotidae; Diceros. REFERENCE 1 (bases 1 to 1981226) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1981226) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA REFERENCE 3 (bases 1 to 1981226) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (23-MAR-2019) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT On Jul 15, 2019 this sequence version replaced PVJY000000000.1. The Diceros bicornis whole genome shotgun (WGS) project has the project accession PVJY000000000. This version of the project (02) has the accession number PVJY020000000, and consists of sequences PVJY020000001-PVJY021981226. ##Genome-Assembly-Data-START## Assembly Method :: Discovar de novo v. 52491 + Dovetail HiC Assembly Name :: DicBicMic_v2_BIUU_UCD Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 44.9x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1981226 /organism="Diceros bicornis" /mol_type="genomic DNA" /isolate="BS38" /db_xref="taxon:9805" /sex="female" /dev_stage="adult" WGS PVJY020000001-PVJY021981226 // LOCUS PVKT020000000 1585152 rc DNA linear MAM 15-JUL-2019 DEFINITION Antilocapra americana isolate BS35, whole genome shotgun sequencing project. ACCESSION PVKT000000000 VERSION PVKT000000000.2 DBLINK BioProject: PRJNA399373 BioSample: SAMN07678063 KEYWORDS WGS. SOURCE Antilocapra americana (pronghorn) ORGANISM Antilocapra americana Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Antilocapridae; Antilocapra. REFERENCE 1 (bases 1 to 1585152) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1585152) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA REFERENCE 3 (bases 1 to 1585152) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (23-MAR-2019) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT On Jul 15, 2019 this sequence version replaced PVKT000000000.1. The Antilocapra americana whole genome shotgun (WGS) project has the project accession PVKT000000000. This version of the project (02) has the accession number PVKT020000000, and consists of sequences PVKT020000001-PVKT021585152. ##Genome-Assembly-Data-START## Assembly Method :: Discovar de novo v. 52488 + Dovetail HiC Assembly Name :: AntAmePen_v2_BIUU_UCD Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 49.3x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1585152 /organism="Antilocapra americana" /mol_type="genomic DNA" /isolate="BS35" /db_xref="taxon:9891" /dev_stage="adult" WGS PVKT020000001-PVKT021585152 // LOCUS PVHZ020000000 1082489 rc DNA linear MAM 15-JUL-2019 DEFINITION Tragulus javanicus isolate US108, whole genome shotgun sequencing project. ACCESSION PVHZ000000000 VERSION PVHZ000000000.2 DBLINK BioProject: PRJNA399456 BioSample: SAMN07678116 KEYWORDS WGS. SOURCE Tragulus javanicus (Java mouse-deer) ORGANISM Tragulus javanicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Tragulina; Tragulidae; Tragulus. REFERENCE 1 (bases 1 to 1082489) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1082489) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA REFERENCE 3 (bases 1 to 1082489) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (22-MAR-2019) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT On Jul 15, 2019 this sequence version replaced PVHZ000000000.1. The Tragulus javanicus whole genome shotgun (WGS) project has the project accession PVHZ000000000. This version of the project (02) has the accession number PVHZ020000000, and consists of sequences PVHZ020000001-PVHZ021082489. ##Genome-Assembly-Data-START## Assembly Method :: Discovar de novo v. discovardenovo-52488; Dovetail HiC v. 28-Sep-2017 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 54.2x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1082489 /organism="Tragulus javanicus" /mol_type="genomic DNA" /isolate="US108" /db_xref="taxon:9849" /sex="male" /dev_stage="adult" WGS PVHZ020000001-PVHZ021082489 // LOCUS PVHU020000000 1072499 rc DNA linear MAM 15-JUL-2019 DEFINITION Moschus moschiferus isolate BS20, whole genome shotgun sequencing project. ACCESSION PVHU000000000 VERSION PVHU000000000.2 DBLINK BioProject: PRJNA399405 BioSample: SAMN07678096 KEYWORDS WGS. SOURCE Moschus moschiferus (Siberian musk deer) ORGANISM Moschus moschiferus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Moschidae; Moschus. REFERENCE 1 (bases 1 to 1072499) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1072499) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA REFERENCE 3 (bases 1 to 1072499) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (23-MAR-2019) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT On Jul 15, 2019 this sequence version replaced PVHU000000000.1. The Moschus moschiferus whole genome shotgun (WGS) project has the project accession PVHU000000000. This version of the project (02) has the accession number PVHU020000000, and consists of sequences PVHU020000001-PVHU021072499. ##Genome-Assembly-Data-START## Assembly Method :: Discovar de novo v. 52493 + Dovetail HiC Assembly Name :: MosMos_v2_BIUU_UCD Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 74.6x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1072499 /organism="Moschus moschiferus" /mol_type="genomic DNA" /isolate="BS20" /db_xref="taxon:68415" /dev_stage="adult" WGS PVHU020000001-PVHU021072499 // LOCUS PVJP02000000 910835 rc DNA linear MAM 15-JUL-2019 DEFINITION Hippopotamus amphibius isolate BS01, whole genome shotgun sequencing project. ACCESSION PVJP00000000 VERSION PVJP00000000.2 DBLINK BioProject: PRJNA399399 BioSample: SAMN07678089 KEYWORDS WGS. SOURCE Hippopotamus amphibius (hippopotamus) ORGANISM Hippopotamus amphibius Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Ancodonta; Hippopotamidae; Hippopotamus. REFERENCE 1 (bases 1 to 910835) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 910835) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA REFERENCE 3 (bases 1 to 910835) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (23-MAR-2019) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT On Jul 15, 2019 this sequence version replaced PVJP00000000.1. The Hippopotamus amphibius whole genome shotgun (WGS) project has the project accession PVJP00000000. This version of the project (02) has the accession number PVJP02000000, and consists of sequences PVJP02000001-PVJP02910835. ##Genome-Assembly-Data-START## Assembly Method :: Discovar de novo v. 52492 + Dovetail HiC Assembly Name :: HipAmp_v2_BIUU_UCD Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 77x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..910835 /organism="Hippopotamus amphibius" /mol_type="genomic DNA" /isolate="BS01" /db_xref="taxon:9833" /dev_stage="adult" WGS PVJP02000001-PVJP02910835 // LOCUS PVHT020000000 1183730 rc DNA linear MAM 15-JUL-2019 DEFINITION Catagonus wagneri isolate BS18, whole genome shotgun sequencing project. ACCESSION PVHT000000000 VERSION PVHT000000000.2 DBLINK BioProject: PRJNA399378 BioSample: SAMN07678067 KEYWORDS WGS. SOURCE Catagonus wagneri (Chacoan peccary) ORGANISM Catagonus wagneri Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Tayassuidae; Catagonus. REFERENCE 1 (bases 1 to 1183730) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1183730) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA REFERENCE 3 (bases 1 to 1183730) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (23-MAR-2019) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT On Jul 15, 2019 this sequence version replaced PVHT000000000.1. The Catagonus wagneri whole genome shotgun (WGS) project has the project accession PVHT000000000. This version of the project (02) has the accession number PVHT020000000, and consists of sequences PVHT020000001-PVHT021183730. ##Genome-Assembly-Data-START## Assembly Method :: Discovar de novo v. 52489 + Dovetail HiC Assembly Name :: CatWag_v2_BIUU_UCD Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 87.1x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1183730 /organism="Catagonus wagneri" /mol_type="genomic DNA" /isolate="BS18" /db_xref="taxon:51154" /dev_stage="adult" WGS PVHT020000001-PVHT021183730 // LOCUS CAAHFD010000000 7239 rc DNA linear VRT 28-MAY-2019 DEFINITION Sparus aurata, whole genome shotgun sequencing project. ACCESSION CAAHFD000000000 VERSION CAAHFD000000000.1 DBLINK BioProject: PRJEB31902 BioSample: SAMEA104384835 KEYWORDS WGS. SOURCE Sparus aurata (gilthead seabream) ORGANISM Sparus aurata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Spariformes; Sparidae; Sparus. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (28-MAR-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Sparus aurata whole genome shotgun (WGS) project has the project accession CAAHFD000000000. This version of the project (01) has the accession number CAAHFD010000000, and consists of sequences CAAHFD010000001-CAAHFD010007239. The assembly fSpaAur1.1 is based on 56x PacBio Sequel data, 62x coverage Illumina HiSeqX data from a 10X Genomics Chromium library generated at the Wellcome Sanger Institute, as well as 71x coverage HiSeqX data from a Hi-C library prepared by Arima Genomics. An initial PacBio assembly was made using Falcon-unzip, and retained haplotigs were identified using purge_haplotigs. The primary contigs were then scaffolded using the 10X data with scaff10x, then scaffolded further using the Hi-C data with SALSA2. Polishing and gap-filling of both the primary scaffolds and haplotigs was performed using the PacBio reads and Arrow, followed by two rounds of Illumina polishing using the 10X data and freebayes. Finally, the assembly was manually improved using gEVAL to correct mis-joins and improve concordance with the raw data. Chromosomes are named according to synteny with the GCA_003309015.1 assembly of Sparus aurata. FEATURES Location/Qualifiers source 1..7239 /organism="Sparus aurata" /mol_type="genomic DNA" /db_xref="taxon:8175" WGS CAAHFD010000001-CAAHFD010007239 // LOCUS CABFKJ010000000 23870 rc DNA linear VRT 28-JUN-2019 DEFINITION Microcaecilia unicolor, whole genome shotgun sequencing project. ACCESSION CABFKJ000000000 VERSION CABFKJ000000000.1 DBLINK BioProject: PRJEB32738 BioSample: SAMEA104387962 KEYWORDS WGS. SOURCE Microcaecilia unicolor ORGANISM Microcaecilia unicolor Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Siphonopidae; Microcaecilia. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (28-MAY-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Microcaecilia unicolor whole genome shotgun (WGS) project has the project accession CABFKJ000000000. This version of the project (01) has the accession number CABFKJ010000000, and consists of sequences CABFKJ010000001-CABFKJ010023870. The assembly aMicUni1.1 is based on 53x PacBio data, 52x coverage 10X Genomics Chromium data, BioNano data and 25x coverage Arima Hi-C data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with Purge Haplotigs, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..23870 /organism="Microcaecilia unicolor" /mol_type="genomic DNA" /db_xref="taxon:1415580" WGS CABFKJ010000001-CABFKJ010023870 // LOCUS CABFVO010000000 6896 rc DNA linear VRT 28-JUN-2019 DEFINITION Sphaeramia orbicularis, whole genome shotgun sequencing project. ACCESSION CABFVO000000000 VERSION CABFVO000000000.1 DBLINK BioProject: PRJEB33176 BioSample: SAMEA4966328 KEYWORDS WGS. SOURCE Sphaeramia orbicularis (orbiculate cardinalfish) ORGANISM Sphaeramia orbicularis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Gobiaria; Kurtiformes; Apogonoidei; Apogonidae; Apogoninae; Sphaeramia. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (25-JUN-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Sphaeramia orbicularis whole genome shotgun (WGS) project has the project accession CABFVO000000000. This version of the project (01) has the accession number CABFVO010000000, and consists of sequences CABFVO010000001-CABFVO010006896. The assembly fSphaOr1.1 is based on 53x PacBio data, 40x coverage 10X Genomics Chromium data, BioNano data and 46x coverage Arima Hi-C data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with Purge Haplotigs, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds are named by synteny to medaka. FEATURES Location/Qualifiers source 1..6896 /organism="Sphaeramia orbicularis" /mol_type="genomic DNA" /db_xref="taxon:375764" WGS CABFVO010000001-CABFVO010006896 // LOCUS CABFVM010000000 4516 rc DNA linear VRT 28-JUN-2019 DEFINITION Salarias fasciatus, whole genome shotgun sequencing project. ACCESSION CABFVM000000000 VERSION CABFVM000000000.1 DBLINK BioProject: PRJEB33183 BioSample: SAMEA4966329 KEYWORDS WGS. SOURCE Salarias fasciatus (jewelled blenny) ORGANISM Salarias fasciatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Blenniimorphae; Blenniiformes; Blennioidei; Blenniidae; Salariinae; Salarias. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (25-JUN-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Salarias fasciatus whole genome shotgun (WGS) project has the project accession CABFVM000000000. This version of the project (01) has the accession number CABFVM010000000, and consists of sequences CABFVM010000001-CABFVM010004516. The assembly fSalaFa1.1 is based on 96x PacBio data, 61x coverage 10X Genomics Chromium data, and 89x coverage Dovetail Hi-C data generated at the Wellcome Sanger Institute, and BioNano data generated by the DeepSeq facility at the University of Nottingham. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with Purge Haplotigs, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds are named by synteny to the GCA_000188235.1 assembly of Nile Tilapia (Oreochromis niloticus). FEATURES Location/Qualifiers source 1..4516 /organism="Salarias fasciatus" /mol_type="genomic DNA" /db_xref="taxon:181472" WGS CABFVM010000001-CABFVM010004516 // LOCUS CABFVL010000000 180 rc DNA linear VRT 28-JUN-2019 DEFINITION Salarias fasciatus, whole genome shotgun sequencing project. ACCESSION CABFVL000000000 VERSION CABFVL000000000.1 DBLINK BioProject: PRJEB33184 BioSample: SAMEA4966329 KEYWORDS WGS. SOURCE Salarias fasciatus (jewelled blenny) ORGANISM Salarias fasciatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Blenniimorphae; Blenniiformes; Blennioidei; Blenniidae; Salariinae; Salarias. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (25-JUN-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Salarias fasciatus whole genome shotgun (WGS) project has the project accession CABFVL000000000. This version of the project (01) has the accession number CABFVL010000000, and consists of sequences CABFVL010000001-CABFVL010000180. The assembly fSalaFa1.1 is based on 96x PacBio data, 61x coverage 10X Genomics Chromium data, and 89x coverage Dovetail Hi-C data generated at the Wellcome Sanger Institute, and BioNano data generated by the DeepSeq facility at the University of Nottingham. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with Purge Haplotigs, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds are named by synteny to the GCA_000188235.1 assembly of Nile Tilapia (Oreochromis niloticus). FEATURES Location/Qualifiers source 1..180 /organism="Salarias fasciatus" /mol_type="genomic DNA" /db_xref="taxon:181472" WGS CABFVL010000001-CABFVL010000180 // LOCUS CABFVN010000000 317 rc DNA linear VRT 28-JUN-2019 DEFINITION Sphaeramia orbicularis, whole genome shotgun sequencing project. ACCESSION CABFVN000000000 VERSION CABFVN000000000.1 DBLINK BioProject: PRJEB33177 BioSample: SAMEA4966328 KEYWORDS WGS. SOURCE Sphaeramia orbicularis (orbiculate cardinalfish) ORGANISM Sphaeramia orbicularis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Gobiaria; Kurtiformes; Apogonoidei; Apogonidae; Apogoninae; Sphaeramia. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (25-JUN-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Sphaeramia orbicularis whole genome shotgun (WGS) project has the project accession CABFVN000000000. This version of the project (01) has the accession number CABFVN010000000, and consists of sequences CABFVN010000001-CABFVN010000317. The assembly fSphaOr1.1 is based on 53x PacBio data, 40x coverage 10X Genomics Chromium data, BioNano data and 46x coverage Arima Hi-C data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with Purge Haplotigs, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds are named by synteny to medaka. FEATURES Location/Qualifiers source 1..317 /organism="Sphaeramia orbicularis" /mol_type="genomic DNA" /db_xref="taxon:375764" WGS CABFVN010000001-CABFVN010000317 // LOCUS SWEC01000000 54415 rc DNA linear ROD 03-JUL-2019 DEFINITION Erethizon dorsatum isolate 214976, whole genome shotgun sequencing project. ACCESSION SWEC00000000 VERSION SWEC00000000.1 DBLINK BioProject: PRJNA523436 BioSample: SAMN10984256 KEYWORDS WGS. SOURCE Erethizon dorsatum (North American porcupine) ORGANISM Erethizon dorsatum Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Erethizontidae; Erethizon. REFERENCE 1 (bases 1 to 54415) AUTHORS Culibrk,L., Leelakumari,S., Taylor,G.A., Tse,K., Cheng,D., Chuah,E., Kirk,H., Pandoh,P., Troussard,A., Zhao,Y., Mungall,A., Moore,R., Sinclair-Smith,T., Desprez,I., Parker,D., Marra,M.A. and Jones,S.J.M. TITLE The genome of the North American Porcupine (Erethizon dorsatum) JOURNAL Unpublished REFERENCE 2 (bases 1 to 54415) AUTHORS Culibrk,L., Leelakumari,S., Taylor,G.A., Tse,K., Cheng,D., Chuah,E., Kirk,H., Pandoh,P., Troussard,A., Zhao,Y., Mungall,A., Moore,R., Sinclair-Smith,T., Desprez,I., Parker,D., Marra,M.A. and Jones,S.J.M. TITLE Direct Submission JOURNAL Submitted (25-APR-2019) Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, #100 570 7th Ave, Vancouver, British Columbia V5Z 4S6, Canada COMMENT The Erethizon dorsatum whole genome shotgun (WGS) project has the project accession SWEC00000000. This version of the project (01) has the accession number SWEC01000000, and consists of sequences SWEC01000001-SWEC01054415. ##Genome-Assembly-Data-START## Assembly Date :: FEB-2019 Assembly Method :: Supernova v. 2.1.1 Assembly Name :: GSC_porc_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 25.0x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..54415 /organism="Erethizon dorsatum" /mol_type="genomic DNA" /isolate="214976" /db_xref="taxon:34844" /sex="female" /tissue_type="blood" /dev_stage="adult" /country="Canada: Saskatoon" /lat_lon="52.1425053 N 106.6282424 W" /collection_date="25-Oct-2018" WGS SWEC01000001-SWEC01054415 WGS_SCAFLD ML655349-ML658772 // LOCUS SWEB01000000 21236 rc DNA linear MAM 03-JUL-2019 DEFINITION Globicephala melas isolate X-22926-18, whole genome shotgun sequencing project. ACCESSION SWEB00000000 VERSION SWEB00000000.1 DBLINK BioProject: PRJNA525909 BioSample: SAMN11083132 KEYWORDS WGS. SOURCE Globicephala melas (long-finned pilot whale) ORGANISM Globicephala melas Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Globicephala. REFERENCE 1 (bases 1 to 21236) AUTHORS Culibrk,L., Leelakumari,S., Taylor,G.A., Tse,K., Cheng,D., Chuah,E., Kirk,H., Pandoh,P., Troussard,A., Zhao,Y., Mungall,A., Moore,R., Bourque,L., Daoust,P.-Y., Jones,M., Ortenburger,A., Marra,M.A. and Jones,S.J.M. TITLE The genome of the Pilot Whale (Globicephala melas) JOURNAL Unpublished REFERENCE 2 (bases 1 to 21236) AUTHORS Culibrk,L., Leelakumari,S., Taylor,G.A., Tse,K., Cheng,D., Chuah,E., Kirk,H., Pandoh,P., Troussard,A., Zhao,Y., Mungall,A., Moore,R., Bourque,L., Daoust,P.-Y., Jones,M., Ortenburger,A., Marra,M.A. and Jones,S.J.M. TITLE Direct Submission JOURNAL Submitted (25-APR-2019) Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, #100 570 7th Ave, Vancouver, British Columbia V5Z 4S6, Canada COMMENT The Globicephala melas whole genome shotgun (WGS) project has the project accession SWEB00000000. This version of the project (01) has the accession number SWEB01000000, and consists of sequences SWEB01000001-SWEB01021236. ##Genome-Assembly-Data-START## Assembly Method :: Supernova v. 2.1.1 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 36.0x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..21236 /organism="Globicephala melas" /mol_type="genomic DNA" /isolate="X-22926-18" /db_xref="taxon:9731" /sex="male" /tissue_type="brain" /dev_stage="adult" /country="Canada: North Lake, Prince Edward Island" WGS SWEB01000001-SWEB01021236 WGS_SCAFLD CM017011 WGS_SCAFLD ML658773-ML660018 // LOCUS VCRE01000000 97740 rc DNA linear VRT 03-JUL-2019 DEFINITION Dermochelys coriacea isolate 2018-Dc-14, whole genome shotgun sequencing project. ACCESSION VCRE00000000 VERSION VCRE00000000.1 DBLINK BioProject: PRJNA528992 BioSample: SAMN11567340 KEYWORDS WGS. SOURCE Dermochelys coriacea (leatherback sea turtle) ORGANISM Dermochelys coriacea Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Dermochelyidae; Dermochelys. REFERENCE 1 (bases 1 to 97740) AUTHORS Culibrk,L., Leelakumari,S., Taylor,G.A., Tse,K., Cheng,D., Chuah,E., Kirk,H., Pandoh,P., Troussard,A., Zhao,Y., Mungall,A., Moore,R., James,M.C., Bond,E.P., Marra,M.A. and Jones,S.J.M. TITLE The genome of the Leatherback Sea Turtle (Dermochelys coriacea) JOURNAL Unpublished REFERENCE 2 (bases 1 to 97740) AUTHORS Culibrk,L., Leelakumari,S., Taylor,G.A., Tse,K., Cheng,D., Chuah,E., Kirk,H., Pandoh,P., Troussard,A., Zhao,Y., Mungall,A., Moore,R., James,M.C., Bond,E.P., Marra,M.A. and Jones,S.J.M. TITLE Direct Submission JOURNAL Submitted (27-MAY-2019) Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, #100 570 7th Ave, Vancouver, British Columbia V5Z 4S6, Canada COMMENT The Dermochelys coriacea whole genome shotgun (WGS) project has the project accession VCRE00000000. This version of the project (01) has the accession number VCRE01000000, and consists of sequences VCRE01000001-VCRE01097740. ##Genome-Assembly-Data-START## Assembly Method :: Supernova v. 2.1.1 Assembly Name :: GSC_toitle_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 32.0x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..97740 /organism="Dermochelys coriacea" /mol_type="genomic DNA" /isolate="2018-Dc-14" /db_xref="taxon:27794" /sex="female" /tissue_type="skin biopsy from inside margin of the front flipper" /dev_stage="adult" /lat_lon="44.40032 N 63.76282 W" WGS VCRE01000001-VCRE01097740 WGS_SCAFLD ML637009-ML655348 // LOCUS SNRU01000000 29793 rc DNA linear VRT 14-JUN-2019 DEFINITION Branta canadensis isolate SJ_97, whole genome shotgun sequencing project. ACCESSION SNRU00000000 VERSION SNRU00000000.1 DBLINK BioProject: PRJNA524684 BioSample: SAMN11031539 KEYWORDS WGS. SOURCE Branta canadensis (Canada goose) ORGANISM Branta canadensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Branta. REFERENCE 1 (bases 1 to 29793) AUTHORS Culibrk,L., Leelakumari,S., Taylor,G.A., Tse,K., Cheng,D., Chuah,E., Kirk,H., Pandoh,P., Troussard,A., Zhao,Y., Mungall,A., Moore,R., Stephenson,J., Bakker,L., Marra,M.A. and Jones,S.J.M. TITLE The Genome of the Canada Goose (Branta canadensis) JOURNAL Unpublished REFERENCE 2 (bases 1 to 29793) AUTHORS Culibrk,L., Leelakumari,S., Taylor,G.A., Tse,K., Cheng,D., Chuah,E., Kirk,H., Pandoh,P., Troussard,A., Zhao,Y., Mungall,A., Moore,R., Stephenson,J., Bakker,L., Marra,M.A. and Jones,S.J.M. TITLE Direct Submission JOURNAL Submitted (12-MAR-2019) Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, #100 570 7th Ave, Vancouver, British Columbia V5Z 4S6, Canada COMMENT The Branta canadensis whole genome shotgun (WGS) project has the project accession SNRU00000000. This version of the project (01) has the accession number SNRU01000000, and consists of sequences SNRU01000001-SNRU01029793. ##Genome-Assembly-Data-START## Assembly Date :: FEB-2019 Assembly Method :: Supernova v. 2.1.1 Assembly Name :: GSC_cangoose_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 80.0x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..29793 /organism="Branta canadensis" /mol_type="genomic DNA" /isolate="SJ_97" /db_xref="taxon:8853" /tissue_type="blood" /dev_stage="adult" /country="Canada: Vancouver" /lat_lon="49.2857524 N 123.1436606 W" WGS SNRU01000001-SNRU01029793 WGS_SCAFLD ML626546-ML629469 // LOCUS CAAJGO020000000 2012 rc DNA linear VRT 31-MAY-2019 DEFINITION Takifugu rubripes, whole genome shotgun sequencing project. ACCESSION CAAJGO000000000 VERSION CAAJGO000000000.2 DBLINK BioProject: PRJEB31989 BioSample: SAMEA104384834 KEYWORDS WGS. SOURCE Takifugu rubripes (torafugu) ORGANISM Takifugu rubripes Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (05-APR-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT On Jun 5, 2019 this sequence version replaced CAAJGO000000000.1. The Takifugu rubripes whole genome shotgun (WGS) project has the project accession CAAJGO000000000. This version of the project (02) has the accession number CAAJGO020000000, and consists of sequences CAAJGO020000001-CAAJGO020002012. The assembly fTakRub1.1 is based on 83x PacBio Sequel data, 70x coverage Illumina HiSeqX data from a 10X Genomics Chromium library generated at the Wellcome Sanger Institute as well as BioNano Saphyr DLE data generated at the Rockefeller University Vertebrate Genome Laboratory and 51x coverage HiSeqX data from a Hi-C library prepared by Arima Genomics. An initial PacBio assembly was made using Falcon-unzip, and retained haplotigs were identified using purge_haplotigs. The primary contigs were then scaffolded using the 10X data with scaff10x, then scaffolded further with BioNano hybrid scaffolding and scaffolded further still using the Hi-C data with SALSA2. Polishing and gap-filling of both the primary scaffolds and haplotigs was performed using the PacBio reads and Arrow, followed by two rounds of Illumina polishing using the 10X data and freebayes. Finally, the assembly was manually improved using gEVAL to correct mis-joins and improve concordance with the BioNano and Hi-C data. Chromosome-scale scaffolds are named by synteny to the GCA_000180615.2 assembly of Takifugu rubripes. FEATURES Location/Qualifiers source 1..2012 /organism="Takifugu rubripes" /mol_type="genomic DNA" /db_xref="taxon:31033" WGS CAAJGO020000001-CAAJGO020002012 // LOCUS CAAJIF010000000 27231 rc DNA linear VRT 08-MAY-2019 DEFINITION Rhinatrema bivittatum, whole genome shotgun sequencing project. ACCESSION CAAJIF000000000 VERSION CAAJIF000000000.1 DBLINK BioProject: PRJEB32112 BioSample: SAMEA104387956 KEYWORDS WGS. SOURCE Rhinatrema bivittatum (two-lined caecilian) ORGANISM Rhinatrema bivittatum Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Rhinatrematidae; Rhinatrema. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (10-APR-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Rhinatrema bivittatum whole genome shotgun (WGS) project has the project accession CAAJIF000000000. This version of the project (01) has the accession number CAAJIF010000000, and consists of sequences CAAJIF010000001-CAAJIF010027231. The assembly aRhiBiv1.1 is based on 43x PacBio data and 41x coverage 10X Genomics Chromium data generated at the Wellcome Sanger Institute, BioNano data generated by BioNano Genomics, and 39x coverage Hi-C data generated at the Wellcome Sanger Institute using a library created by Arima Genomics. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with Purge Haplotigs, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..27231 /organism="Rhinatrema bivittatum" /mol_type="genomic DNA" /db_xref="taxon:194408" WGS CAAJIF010000001-CAAJIF010027231 // LOCUS CABFKF010000000 1848 rc DNA linear VRT 28-MAY-2019 DEFINITION Syngnathus acus, whole genome shotgun sequencing project. ACCESSION CABFKF000000000 VERSION CABFKF000000000.1 DBLINK BioProject: PRJEB32742 BioSample: SAMEA104381750 KEYWORDS WGS. SOURCE Syngnathus acus (greater pipefish) ORGANISM Syngnathus acus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Syngnathus. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (24-MAY-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Syngnathus acus whole genome shotgun (WGS) project has the project accession CABFKF000000000. This version of the project (01) has the accession number CABFKF010000000, and consists of sequences CABFKF010000001-CABFKF010001848. The assembly fSynAcu1.1 is based on 96x PacBio data, 190x coverage 10X Genomics Chromium data, and 159x coverage Dovetail Hi-C data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with Purge Haplotigs, 10X based scaffolding with scaff10x, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds are named by synteny to medaka. FEATURES Location/Qualifiers source 1..1848 /organism="Syngnathus acus" /mol_type="genomic DNA" /db_xref="taxon:161584" WGS CABFKF010000001-CABFKF010001848 // LOCUS SKFP01000000 156502 rc DNA linear INV 28-MAY-2019 DEFINITION Pandalus platyceros isolate SPOT, whole genome shotgun sequencing project. ACCESSION SKFP00000000 VERSION SKFP00000000.1 DBLINK BioProject: PRJNA492798 BioSample: SAMN10106038 KEYWORDS WGS. SOURCE Pandalus platyceros ORGANISM Pandalus platyceros Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Caridea; Pandaloidea; Pandalidae; Pandalus. REFERENCE 1 (bases 1 to 156502) AUTHORS Culibrk,L., Leelakumari,S., Taylor,G.A., Tse,K., Cheng,D., Chuah,E., Kirk,H., Pandoh,P., Troussard,A., Zhao,Y., Mungall,A., Moore,R., Marra,M.A. and Jones,S.J.M. TITLE The genome of the Spot Prawn (Pandalus platyceros) JOURNAL Unpublished REFERENCE 2 (bases 1 to 156502) AUTHORS Culibrk,L., Leelakumari,S., Taylor,G.A., Tse,K., Cheng,D., Chuah,E., Kirk,H., Pandoh,P., Troussard,A., Zhao,Y., Mungall,A., Moore,R., Marra,M.A. and Jones,S.J.M. TITLE Direct Submission JOURNAL Submitted (11-JAN-2019) Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, 100 570 7th Ave, Vancouver, British Columbia V5Z 4S6, Canada COMMENT The Pandalus platyceros whole genome shotgun (WGS) project has the project accession SKFP00000000. This version of the project (01) has the accession number SKFP01000000, and consists of sequences SKFP01000001-SKFP01156502. ##Genome-Assembly-Data-START## Assembly Date :: OCT-2018 Assembly Method :: Supernova v. 2.1.1 Assembly Name :: GSC_Sprawn_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 40.0x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..156502 /organism="Pandalus platyceros" /mol_type="genomic DNA" /isolate="SPOT" /db_xref="taxon:263425" /sex="female" /tissue_type="Flexor muscle" /dev_stage="adult" WGS SKFP01000001-SKFP01156502 WGS_SCAFLD ML567447-ML621246 // LOCUS QZWP02000000 68594 rc DNA linear ROD 28-MAY-2019 DEFINITION Marmota flaviventris isolate SJ_83, whole genome shotgun sequencing project. ACCESSION QZWP00000000 VERSION QZWP00000000.2 DBLINK BioProject: PRJNA491472 BioSample: SAMN10078668 KEYWORDS WGS. SOURCE Marmota flaviventris (yellow-bellied marmot) ORGANISM Marmota flaviventris Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Marmota. REFERENCE 1 (bases 1 to 68594) AUTHORS Culibrk,L., Leelakumari,S., Taylor,G.A., Tse,K., Cheng,D., Chuah,E., Kirk,H., Pandoh,P., Troussard,A., Zhao,Y., Mungall,A.J., Moore,R., Marra,M.A. and Jones,S.J.M. TITLE The genome of the Yellow Bellied Marmot (Marmota flaviventris) JOURNAL Unpublished REFERENCE 2 (bases 1 to 68594) AUTHORS Culibrk,L., Leelakumari,S., Taylor,G.A., Tse,K., Cheung,D., Chuah,E., Kirk,H., Pandoh,P., Troussard,A., Zhao,Y., Mungall,A.J., Moore,R., Marra,M.A., McAdie,M. and Jones,S.J.M. TITLE Direct Submission JOURNAL Submitted (19-SEP-2018) Genome Sciences Centre, BC Cancer Agency, Canada's Michael Smith Genome Sciences Centre, 100 570 West 7th Ave, Vancouver, BC V5Z-4S6, Canada REFERENCE 3 (bases 1 to 68594) AUTHORS Culibrk,L., Leelakumari,S., Taylor,G.A., Tse,K., Cheng,D., Chuah,E., Kirk,H., Pandoh,P., Troussard,A., Zhao,Y., Mungall,A.J., Moore,R., Marra,M.A. and Jones,S.J.M. TITLE Direct Submission JOURNAL Submitted (11-JAN-2019) Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, 100 570 7th Ave, Vancouver, British Columbia V5Z 4S6, Canada COMMENT On May 24, 2019 this sequence version replaced QZWP00000000.1. The Marmota flaviventris whole genome shotgun (WGS) project has the project accession QZWP00000000. This version of the project (02) has the accession number QZWP02000000, and consists of sequences QZWP02000001-QZWP02068594. ##Genome-Assembly-Data-START## Assembly Date :: SEP-2018 Assembly Method :: Supernova v. 2.1.1 Assembly Name :: GSC_YBM_2.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 45.0x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..68594 /organism="Marmota flaviventris" /mol_type="genomic DNA" /isolate="SJ_83" /db_xref="taxon:93162" /sex="female" /tissue_type="blood" /dev_stage="adult" WGS QZWP02000001-QZWP02068594 WGS_SCAFLD ML561814-ML567446 // LOCUS RRCD01000000 160 rc DNA linear VRT 17-MAY-2019 DEFINITION Calypte anna isolate BGI_N300, whole genome shotgun sequencing project. ACCESSION RRCD00000000 VERSION RRCD00000000.1 DBLINK BioProject: PRJNA489139 BioSample: SAMN02265252 KEYWORDS WGS. SOURCE Calypte anna (Anna's hummingbird) ORGANISM Calypte anna Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Caprimulgimorphae; Apodiformes; Trochilidae; Calypte. REFERENCE 1 (bases 1 to 160) AUTHORS Jarvis,E.D., Rhei,A., Korlach,J., Fedrigo,O., Koren,S., Howe,K., Damas,J., Lovell,P., Mountcastle,J., Howard,J., Mello,C.V., Myers,G., Durbin,R., Lewin,H., Hastie,A., Selvaraj,S., Ning,Z., Wood,J., Mccarthy,S. and Phillippy,A. TITLE G10K-VGP Anna's hummingbird female genome, primary haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 160) AUTHORS Jarvis,E.D., Rhei,A., Korlach,J., Fedrigo,O., Koren,S., Howe,K., Damas,J., Lovell,P., Mountcastle,J., Howard,J., Mello,C.V., Myers,G., Durbin,R., Lewin,H., Hastie,A., Selvaraj,S., Ning,Z., Wood,J., Mccarthy,S. and Phillippy,A. TITLE Direct Submission JOURNAL Submitted (06-NOV-2018) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA REFERENCE 3 (bases 1 to 160) AUTHORS Jarvis,E.D., Rhei,A., Korlach,J., Fedrigo,O., Koren,S., Howe,K., Damas,J., Lovell,P., Mountcastle,J., Howard,J., Mello,C.V., Myers,G., Durbin,R., Lewin,H., Hastie,A., Selvaraj,S., Ning,Z., Wood,J., Mccarthy,S., Phillippy,A. and Formenti,G. TITLE Direct Submission JOURNAL Submitted (08-MAY-2019) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT On May 16, 2019 this sequence version replaced gi:1540356545. The Calypte anna whole genome shotgun (WGS) project has the project accession RRCD00000000. This version of the project (01) has the accession number RRCD01000000, and consists of sequences RRCD01000001-RRCD01000160. This assembly represents the primary haplotype of the diploid genome Calypte anna and includes the chromosomes. The alternate haplotype sequences are in WGS project RRCE00000000. In May 2019 the mitochondrial sequence (RRCD01000160) was added to this 01 version of RRCD00000000. ##Genome-Assembly-Data-START## Assembly Date :: 19-OCT-2018 Assembly Method :: FALCON v. 5.1.1; FALCON unzip v. 1.0.2; scaff10X v. git 4.28.2018; Bionano Solve v. DLS 3.2.1; Salsa2 HiC v. 2.0; smrtanalysis Arrow polishing & gap filling v. 5.1.0.26412; longranger align v. 2.2.2; freebayes v. 1.2.0; purge_haplotigs v. bit 7.10.2018; gEVAL manual curation v. 2018-09-07 Assembly Name :: bCalAnn1_v1.p Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 54.0x Sequencing Technology :: PacBio RSII; 10X Genomics linked reads; Bionano Genomics DLS; Arima Genomics HiC ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..160 /organism="Calypte anna" /mol_type="genomic DNA" /isolate="BGI_N300" /db_xref="taxon:9244" /sex="female" /country="USA" WGS RRCD01000001-RRCD01000160 WGS_SCAFLD CM012114-CM012146 WGS_SCAFLD CM016612 // LOCUS CAAHFR010000000 2006 rc DNA linear VRT 09-APR-2019 DEFINITION Scleropages formosus, whole genome shotgun sequencing project. ACCESSION CAAHFR000000000 VERSION CAAHFR000000000.1 DBLINK BioProject: PRJEB31996 BioSample: SAMEA4872123 KEYWORDS WGS. SOURCE Scleropages formosus (Asian bonytongue) ORGANISM Scleropages formosus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Osteoglossocephala; Osteoglossomorpha; Osteoglossiformes; Osteoglossidae; Scleropages. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (02-APR-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Scleropages formosus whole genome shotgun (WGS) project has the project accession CAAHFR000000000. This version of the project (01) has the accession number CAAHFR010000000, and consists of sequences CAAHFR010000001-CAAHFR010002006. The assembly fSclFor1.1 is based on 72x PacBio data, 88x coverage 10X Genomics Chromium data, BioNano data and 67x coverage Arima Hi-C data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with Purge Haplotigs, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..2006 /organism="Scleropages formosus" /mol_type="genomic DNA" /db_xref="taxon:113540" WGS CAAHFR010000001-CAAHFR010002006 // LOCUS CAAHFP010000000 1405 rc DNA linear VRT 09-APR-2019 DEFINITION Echeneis naucrates, whole genome shotgun sequencing project. ACCESSION CAAHFP000000000 VERSION CAAHFP000000000.1 DBLINK BioProject: PRJEB31993 BioSample: SAMEA4966390 KEYWORDS WGS. SOURCE Echeneis naucrates (live sharksucker) ORGANISM Echeneis naucrates Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Echeneidae; Echeneis. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (02-APR-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Echeneis naucrates whole genome shotgun (WGS) project has the project accession CAAHFP000000000. This version of the project (01) has the accession number CAAHFP010000000, and consists of sequences CAAHFP010000001-CAAHFP010001405. The assembly fEcheNa1.1 is based on 62x PacBio data, 100x coverage 10X Genomics Chromium data, BioNano data and 112x coverage Dovetail Hi-C data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with Purge Haplotigs, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds are named by synteny to medaka. FEATURES Location/Qualifiers source 1..1405 /organism="Echeneis naucrates" /mol_type="genomic DNA" /db_xref="taxon:173247" WGS CAAHFP010000001-CAAHFP010001405 // LOCUS CAAHFQ010000000 46 rc DNA linear VRT 09-APR-2019 DEFINITION Scleropages formosus, whole genome shotgun sequencing project. ACCESSION CAAHFQ000000000 VERSION CAAHFQ000000000.1 DBLINK BioProject: PRJEB31995 BioSample: SAMEA4872123 KEYWORDS WGS. SOURCE Scleropages formosus (Asian bonytongue) ORGANISM Scleropages formosus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Osteoglossocephala; Osteoglossomorpha; Osteoglossiformes; Osteoglossidae; Scleropages. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (02-APR-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Scleropages formosus whole genome shotgun (WGS) project has the project accession CAAHFQ000000000. This version of the project (01) has the accession number CAAHFQ010000000, and consists of sequences CAAHFQ010000001-CAAHFQ010000046. The assembly fSclFor1.1 is based on 72x PacBio data, 88x coverage 10X Genomics Chromium data, BioNano data and 67x coverage Arima Hi-C data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with Purge Haplotigs, 10X based scaffolding with scaff10x, BioNano hybrid-scaffolding, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. FEATURES Location/Qualifiers source 1..46 /organism="Scleropages formosus" /mol_type="genomic DNA" /db_xref="taxon:113540" WGS CAAHFQ010000001-CAAHFQ010000046 // LOCUS SMLS01000000 81484 rc DNA linear INV 12-APR-2019 DEFINITION Popillia japonica isolate SJ_88, whole genome shotgun sequencing project. ACCESSION SMLS00000000 VERSION SMLS00000000.1 DBLINK BioProject: PRJNA514809 BioSample: SAMN10734816 KEYWORDS WGS. SOURCE Popillia japonica (Japanese beetle) ORGANISM Popillia japonica Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Scarabaeiformia; Scarabaeidae; Rutelinae; Popillia. REFERENCE 1 (bases 1 to 81484) AUTHORS Culibrk,L., Leelakumari,S., Taylor,G.A., Tse,K., Cheng,D., Chuah,E., Kirk,H., Pandoh,P., Troussard,A., Zhao,Y., Mungall,A., Moore,R., Marra,M.A. and Jones,S.J.M. TITLE The genome of the Japanese Beetle (Popillia japonica) JOURNAL Unpublished REFERENCE 2 (bases 1 to 81484) AUTHORS Culibrk,L., Leelakumari,S., Taylor,G.A., Tse,K., Cheng,D., Chuah,E., Kirk,H., Pandoh,P., Troussard,A., Zhao,Y., Mungall,A., Moore,R., Marra,M.A. and Jones,S.J.M. TITLE Direct Submission JOURNAL Submitted (30-JAN-2019) Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, #100 570 7th Ave, Vancouver, British Columbia V5Z 4S6, Canada COMMENT The Popillia japonica whole genome shotgun (WGS) project has the project accession SMLS00000000. This version of the project (01) has the accession number SMLS01000000, and consists of sequences SMLS01000001-SMLS01081484. ##Genome-Assembly-Data-START## Assembly Date :: SEP-2018 Assembly Method :: Supernova v. 2.1.1 Assembly Name :: GSC_JBeet_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 40.0x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..81484 /organism="Popillia japonica" /mol_type="genomic DNA" /isolate="SJ_88" /db_xref="taxon:7064" /sex="male" /tissue_type="leg" /dev_stage="adult" /country="Canada: Vancouver" /lat_lon="49.272499 N 123.124276 W" WGS SMLS01000001-SMLS01081484 WGS_SCAFLD ML214301-ML219767 // LOCUS SOZM010000000 2116242 rc DNA linear MAM 09-APR-2019 DEFINITION Phataginus tricuspis isolate BS60, whole genome shotgun sequencing project. ACCESSION SOZM000000000 VERSION SOZM000000000.1 DBLINK BioProject: PRJNA399460 BioSample: SAMN07678093 KEYWORDS WGS. SOURCE Phataginus tricuspis (Tree pangolin) ORGANISM Phataginus tricuspis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Pholidota; Manidae; Phataginus. REFERENCE 1 (bases 1 to 2116242) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 2116242) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (21-MAR-2019) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Phataginus tricuspis whole genome shotgun (WGS) project has the project accession SOZM000000000. This version of the project (01) has the accession number SOZM010000000, and consists of sequences SOZM010000001-SOZM012116242. ##Genome-Assembly-Data-START## Assembly Method :: Discovar de novo v. discovardenovo-52488Di Assembly Name :: ManTri_v1_BIUU Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 30.2x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..2116242 /organism="Phataginus tricuspis" /mol_type="genomic DNA" /isolate="BS60" /db_xref="taxon:358128" /dev_stage="adult" WGS SOZM010000001-SOZM012116242 // LOCUS CAADHU010000000 1437 rc DNA linear VRT 01-APR-2019 DEFINITION Mastacembelus armatus, whole genome shotgun sequencing project. ACCESSION CAADHU000000000 VERSION CAADHU000000000.1 DBLINK BioProject: PRJEB31553 BioSample: SAMEA104026378 KEYWORDS WGS. SOURCE Mastacembelus armatus (zig-zag eel) ORGANISM Mastacembelus armatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Synbranchiformes; Mastacembelidae; Mastacembelus. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (05-MAR-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Mastacembelus armatus whole genome shotgun (WGS) project has the project accession CAADHU000000000. This version of the project (01) has the accession number CAADHU010000000, and consists of sequences CAADHU010000001-CAADHU010001437. FEATURES Location/Qualifiers source 1..1437 /organism="Mastacembelus armatus" /mol_type="genomic DNA" /db_xref="taxon:205130" WGS CAADHU010000001-CAADHU010001437 // LOCUS CAADHT010000000 1972 rc DNA linear VRT 14-MAR-2019 DEFINITION Denticeps clupeoides, whole genome shotgun sequencing project. ACCESSION CAADHT000000000 VERSION CAADHT000000000.1 DBLINK BioProject: PRJEB31546 BioSample: SAMEA104129917 KEYWORDS WGS. SOURCE Denticeps clupeoides (denticle herring) ORGANISM Denticeps clupeoides Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Denticipitoidei; Denticipitidae; Denticeps. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (05-MAR-2019) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Denticeps clupeoides whole genome shotgun (WGS) project has the project accession CAADHT000000000. This version of the project (01) has the accession number CAADHT010000000, and consists of sequences CAADHT010000001-CAADHT010001972. FEATURES Location/Qualifiers source 1..1972 /organism="Denticeps clupeoides" /mol_type="genomic DNA" /db_xref="taxon:299321" WGS CAADHT010000001-CAADHT010001972 // LOCUS RJWV010000000 3883620 rc DNA linear MAM 22-MAR-2019 DEFINITION Tupaia tana isolate BS70, whole genome shotgun sequencing project. ACCESSION RJWV000000000 VERSION RJWV000000000.1 DBLINK BioProject: PRJNA399462 BioSample: SAMN07678117 KEYWORDS WGS. SOURCE Tupaia tana (large tree shrew) ORGANISM Tupaia tana Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Scandentia; Tupaiidae; Tupaia. REFERENCE 1 (bases 1 to 3883620) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V., Genereux,D., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 3883620) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V., Genereux,D., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (19-SEP-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Tupaia tana whole genome shotgun (WGS) project has the project accession RJWV000000000. This version of the project (01) has the accession number RJWV010000000, and consists of sequences RJWV010000001-RJWV013883620. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: TupTan_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 25x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..3883620 /organism="Tupaia tana" /mol_type="genomic DNA" /isolate="BS70" /db_xref="taxon:70687" /dev_stage="adult" WGS RJWV010000001-RJWV013883620 // LOCUS RJWT010000000 3768450 rc DNA linear ROD 22-MAR-2019 DEFINITION Cuniculus paca isolate BS43, whole genome shotgun sequencing project. ACCESSION RJWT000000000 VERSION RJWT000000000.1 DBLINK BioProject: PRJNA399385 BioSample: SAMN07678075 KEYWORDS WGS. SOURCE Cuniculus paca (Lowland paca) ORGANISM Cuniculus paca Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Cuniculidae; Cuniculus. REFERENCE 1 (bases 1 to 3768450) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V., Genereux,D., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 3768450) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V., Genereux,D., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (19-SEP-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Cuniculus paca whole genome shotgun (WGS) project has the project accession RJWT000000000. This version of the project (01) has the accession number RJWT010000000, and consists of sequences RJWT010000001-RJWT013768450. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: CunPac_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 23.4x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..3768450 /organism="Cuniculus paca" /mol_type="genomic DNA" /isolate="BS43" /db_xref="taxon:108852" /dev_stage="adult" WGS RJWT010000001-RJWT013768450 // LOCUS RJWU010000000 2675444 rc DNA linear MAM 22-MAR-2019 DEFINITION Orycteropus afer isolate BS58, whole genome shotgun sequencing project. ACCESSION RJWU000000000 VERSION RJWU000000000.1 DBLINK BioProject: PRJNA399461 BioSample: SAMN07678101 KEYWORDS WGS. SOURCE Orycteropus afer (aardvark) ORGANISM Orycteropus afer Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Tubulidentata; Orycteropodidae; Orycteropus. REFERENCE 1 (bases 1 to 2675444) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V., Genereux,D., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 2675444) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V., Genereux,D., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (19-SEP-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Orycteropus afer whole genome shotgun (WGS) project has the project accession RJWU000000000. This version of the project (01) has the accession number RJWU010000000, and consists of sequences RJWU010000001-RJWU012675444. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: OryAfe_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 35.2x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..2675444 /organism="Orycteropus afer" /mol_type="genomic DNA" /isolate="BS58" /db_xref="taxon:9818" /dev_stage="adult" WGS RJWU010000001-RJWU012675444 // LOCUS RJWS010000000 3758276 rc DNA linear MAM 22-MAR-2019 DEFINITION Ziphius cavirostris isolate BS68, whole genome shotgun sequencing project. ACCESSION RJWS000000000 VERSION RJWS000000000.1 DBLINK BioProject: PRJNA399469 BioSample: SAMN07678128 KEYWORDS WGS. SOURCE Ziphius cavirostris (Cuvier's beaked whale) ORGANISM Ziphius cavirostris Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Ziphiidae; Ziphius. REFERENCE 1 (bases 1 to 3758276) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V., Genereux,D., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 3758276) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V., Genereux,D., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (07-SEP-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Ziphius cavirostris whole genome shotgun (WGS) project has the project accession RJWS000000000. This version of the project (01) has the accession number RJWS010000000, and consists of sequences RJWS010000001-RJWS013758276. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: ZipCav_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 30.6x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..3758276 /organism="Ziphius cavirostris" /mol_type="genomic DNA" /isolate="BS68" /db_xref="taxon:9760" /sex="female" /dev_stage="adult" WGS RJWS010000001-RJWS013758276 // LOCUS RJWR010000000 2409818 rc DNA linear ROD 22-MAR-2019 DEFINITION Perognathus longimembris pacificus isolate BS65, whole genome shotgun sequencing project. ACCESSION RJWR000000000 VERSION RJWR000000000.1 DBLINK BioProject: PRJNA399459 BioSample: SAMN07678105 KEYWORDS WGS. SOURCE Perognathus longimembris pacificus (Pacific pocket mouse) ORGANISM Perognathus longimembris pacificus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Heteromyidae; Perognathinae; Perognathus. REFERENCE 1 (bases 1 to 2409818) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V., Genereux,D., Birren,B., Lindblad-Toh,K. and Karlsson,E.K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 2409818) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V., Genereux,D., Birren,B., Lindblad-Toh,K. and Karlsson,E.K. TITLE Direct Submission JOURNAL Submitted (08-NOV-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Perognathus longimembris pacificus whole genome shotgun (WGS) project has the project accession RJWR000000000. This version of the project (01) has the accession number RJWR010000000, and consists of sequences RJWR010000001-RJWR012409818. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: PerLonPac_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 59.6x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..2409818 /organism="Perognathus longimembris pacificus" /mol_type="genomic DNA" /isolate="BS65" /sub_species="pacificus" /db_xref="taxon:214514" /sex="male" /dev_stage="adult" WGS RJWR010000001-RJWR012409818 // LOCUS RJWP010000000 1353963 rc DNA linear MAM 22-MAR-2019 DEFINITION Eubalaena japonica isolate BS61, whole genome shotgun sequencing project. ACCESSION RJWP000000000 VERSION RJWP000000000.1 DBLINK BioProject: PRJNA399464 BioSample: SAMN07678124 KEYWORDS WGS. SOURCE Eubalaena japonica (North Pacific right whale) ORGANISM Eubalaena japonica Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Mysticeti; Balaenidae; Eubalaena. REFERENCE 1 (bases 1 to 1353963) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V., Genereux,D., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1353963) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V., Genereux,D., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (07-SEP-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Eubalaena japonica whole genome shotgun (WGS) project has the project accession RJWP000000000. This version of the project (01) has the accession number RJWP010000000, and consists of sequences RJWP010000001-RJWP011353963. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: EubJap_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 40x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1353963 /organism="Eubalaena japonica" /mol_type="genomic DNA" /isolate="BS61" /db_xref="taxon:302098" /sex="male" /dev_stage="adult" WGS RJWP010000001-RJWP011353963 // LOCUS RJWQ010000000 1331158 rc DNA linear MAM 22-MAR-2019 DEFINITION Phocoena phocoena isolate BS71, whole genome shotgun sequencing project. ACCESSION RJWQ000000000 VERSION RJWQ000000000.1 DBLINK BioProject: PRJNA399454 BioSample: SAMN07678060 KEYWORDS WGS. SOURCE Phocoena phocoena (harbor porpoise) ORGANISM Phocoena phocoena Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Phocoena. REFERENCE 1 (bases 1 to 1331158) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V., Genereux,D., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1331158) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V., Genereux,D., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (18-SEP-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Phocoena phocoena whole genome shotgun (WGS) project has the project accession RJWQ000000000. This version of the project (01) has the accession number RJWQ010000000, and consists of sequences RJWQ010000001-RJWQ011331158. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: PhoPho_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 56.4x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1331158 /organism="Phocoena phocoena" /mol_type="genomic DNA" /isolate="BS71" /db_xref="taxon:9742" /dev_stage="adult" WGS RJWQ010000001-RJWQ011331158 // LOCUS RJWM01000000 986664 rc DNA linear ROD 22-MAR-2019 DEFINITION Dasyprocta punctata isolate BS37, whole genome shotgun sequencing project. ACCESSION RJWM00000000 VERSION RJWM00000000.1 DBLINK BioProject: PRJNA399386 BioSample: SAMN07678076 KEYWORDS WGS. SOURCE Dasyprocta punctata (punctate agouti) ORGANISM Dasyprocta punctata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Dasyproctidae; Dasyprocta. REFERENCE 1 (bases 1 to 986664) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V., Genereux,D., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 986664) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V., Genereux,D., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (19-SEP-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Dasyprocta punctata whole genome shotgun (WGS) project has the project accession RJWM00000000. This version of the project (01) has the accession number RJWM01000000, and consists of sequences RJWM01000001-RJWM01986664. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: DasPun_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 40x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..986664 /organism="Dasyprocta punctata" /mol_type="genomic DNA" /isolate="BS37" /db_xref="taxon:34846" /dev_stage="adult" WGS RJWM01000001-RJWM01986664 // LOCUS RJWI010000000 1885058 rc DNA linear MAM 22-MAR-2019 DEFINITION Pontoporia blainvillei isolate BS67, whole genome shotgun sequencing project. ACCESSION RJWI000000000 VERSION RJWI000000000.1 DBLINK BioProject: PRJNA399468 BioSample: SAMN07678127 KEYWORDS WGS. SOURCE Pontoporia blainvillei (franciscana) ORGANISM Pontoporia blainvillei Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Pontoporiidae; Pontoporia. REFERENCE 1 (bases 1 to 1885058) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V., Genereux,D., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1885058) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V., Genereux,D., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (07-SEP-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Pontoporia blainvillei whole genome shotgun (WGS) project has the project accession RJWI000000000. This version of the project (01) has the accession number RJWI010000000, and consists of sequences RJWI010000001-RJWI011885058. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: PonBla_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 55.3x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1885058 /organism="Pontoporia blainvillei" /mol_type="genomic DNA" /isolate="BS67" /db_xref="taxon:48723" /sex="female" /dev_stage="adult" WGS RJWI010000001-RJWI011885058 // LOCUS RJWL010000000 1252072 rc DNA linear MAM 22-MAR-2019 DEFINITION Kogia breviceps isolate BS64, whole genome shotgun sequencing project. ACCESSION RJWL000000000 VERSION RJWL000000000.1 DBLINK BioProject: PRJNA399466 BioSample: SAMN07678126 KEYWORDS WGS. SOURCE Kogia breviceps (pygmy sperm whale) ORGANISM Kogia breviceps Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Kogia. REFERENCE 1 (bases 1 to 1252072) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V., Genereux,D., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1252072) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V., Genereux,D., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (07-SEP-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Kogia breviceps whole genome shotgun (WGS) project has the project accession RJWL000000000. This version of the project (01) has the accession number RJWL010000000, and consists of sequences RJWL010000001-RJWL011252072. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: KogBre_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 38.8x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1252072 /organism="Kogia breviceps" /mol_type="genomic DNA" /isolate="BS64" /db_xref="taxon:27615" /dev_stage="adult" WGS RJWL010000001-RJWL011252072 // LOCUS RJWJ010000000 1243540 rc DNA linear PRI 22-MAR-2019 DEFINITION Indri indri isolate BS62, whole genome shotgun sequencing project. ACCESSION RJWJ000000000 VERSION RJWJ000000000.1 DBLINK BioProject: PRJNA399458 BioSample: SAMN07678091 KEYWORDS WGS. SOURCE Indri indri ORGANISM Indri indri Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Indriidae; Indri. REFERENCE 1 (bases 1 to 1243540) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V., Genereux,D., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1243540) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V., Genereux,D., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (18-SEP-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Indri indri whole genome shotgun (WGS) project has the project accession RJWJ000000000. This version of the project (01) has the accession number RJWJ010000000, and consists of sequences RJWJ010000001-RJWJ011243540. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: IndInd_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 34.4x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1243540 /organism="Indri indri" /mol_type="genomic DNA" /isolate="BS62" /db_xref="taxon:34827" /sex="female" /dev_stage="adult" WGS RJWJ010000001-RJWJ011243540 // LOCUS RJWO010000000 1213610 rc DNA linear MAM 22-MAR-2019 DEFINITION Inia geoffrensis isolate BS63, whole genome shotgun sequencing project. ACCESSION RJWO000000000 VERSION RJWO000000000.1 DBLINK BioProject: PRJNA399465 BioSample: SAMN07678125 KEYWORDS WGS. SOURCE Inia geoffrensis (boutu) ORGANISM Inia geoffrensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Iniidae; Inia. REFERENCE 1 (bases 1 to 1213610) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V., Genereux,D., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1213610) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V., Genereux,D., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (07-SEP-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Inia geoffrensis whole genome shotgun (WGS) project has the project accession RJWO000000000. This version of the project (01) has the accession number RJWO010000000, and consists of sequences RJWO010000001-RJWO011213610. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: IniGeo_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 42.5x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1213610 /organism="Inia geoffrensis" /mol_type="genomic DNA" /isolate="BS63" /db_xref="taxon:9725" /sex="male" /dev_stage="adult" WGS RJWO010000001-RJWO011213610 // LOCUS RJWK010000000 1098790 rc DNA linear MAM 22-MAR-2019 DEFINITION Platanista minor isolate BS66, whole genome shotgun sequencing project. ACCESSION RJWK000000000 VERSION RJWK000000000.1 DBLINK BioProject: PRJNA399467 BioSample: SAMN07678149 KEYWORDS WGS. SOURCE Platanista minor (Indus River dolphin) ORGANISM Platanista minor Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Platanistidae; Platanista. REFERENCE 1 (bases 1 to 1098790) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V., Genereux,D., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1098790) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V., Genereux,D., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (07-SEP-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Platanista minor whole genome shotgun (WGS) project has the project accession RJWK000000000. This version of the project (01) has the accession number RJWK010000000, and consists of sequences RJWK010000001-RJWK011098790. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: PlaMin_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 28x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1098790 /organism="Platanista minor" /mol_type="genomic DNA" /isolate="BS66" /db_xref="taxon:48752" /sex="female" /dev_stage="adult" WGS RJWK010000001-RJWK011098790 // LOCUS RJWN010000000 1036148 rc DNA linear MAM 22-MAR-2019 DEFINITION Eschrichtius robustus isolate BS60, whole genome shotgun sequencing project. ACCESSION RJWN000000000 VERSION RJWN000000000.1 DBLINK BioProject: PRJNA399463 BioSample: SAMN07678123 KEYWORDS WGS. SOURCE Eschrichtius robustus (grey whale) ORGANISM Eschrichtius robustus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Mysticeti; Eschrichtiidae; Eschrichtius. REFERENCE 1 (bases 1 to 1036148) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V., Genereux,D., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1036148) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V., Genereux,D., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (10-SEP-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Eschrichtius robustus whole genome shotgun (WGS) project has the project accession RJWN000000000. This version of the project (01) has the accession number RJWN010000000, and consists of sequences RJWN010000001-RJWN011036148. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: EscRob_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 40.5x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1036148 /organism="Eschrichtius robustus" /mol_type="genomic DNA" /isolate="BS60" /db_xref="taxon:9764" /sex="male" /dev_stage="adult" WGS RJWN010000001-RJWN011036148 // LOCUS RJWH01000000 176618 rc DNA linear MAM 22-MAR-2019 DEFINITION Solenodon paradoxus isolate US097, whole genome shotgun sequencing project. ACCESSION RJWH00000000 VERSION RJWH00000000.1 DBLINK BioProject: PRJNA399371 BioSample: SAMN07678062 KEYWORDS WGS. SOURCE Solenodon paradoxus (Hispaniolan solenodon) ORGANISM Solenodon paradoxus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Solenodontidae; Solenodon. REFERENCE 1 (bases 1 to 176618) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V., Genereux,D., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 176618) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V., Genereux,D., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (10-SEP-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Solenodon paradoxus whole genome shotgun (WGS) project has the project accession RJWH00000000. This version of the project (01) has the accession number RJWH01000000, and consists of sequences RJWH01000001-RJWH01176618. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: SolPar_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 29.3x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..176618 /organism="Solenodon paradoxus" /mol_type="genomic DNA" /isolate="US097" /db_xref="taxon:79805" /dev_stage="adult" WGS RJWH01000001-RJWH01176618 // LOCUS SAUM01000000 33924 rc DNA linear VRT 22-MAR-2019 DEFINITION Anarrhichthys ocellatus isolate YVR2014, whole genome shotgun sequencing project. ACCESSION SAUM00000000 VERSION SAUM00000000.1 DBLINK BioProject: PRJNA496475 BioSample: SAMN10245424 KEYWORDS WGS. SOURCE Anarrhichthys ocellatus (wolf-eel) ORGANISM Anarrhichthys ocellatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Zoarcales; Anarhichadidae; Anarrhichthys. REFERENCE 1 (bases 1 to 33924) AUTHORS Culibrk,L., Leelakumari,S., Taylor,G.A., Tse,K., Cheng,D., Chuah,E., Kirk,H., Pandoh,P., Troussard,A., Zhao,Y., Mungall,A., Moore,R., Marra,M.A. and Jones,S.J.M. TITLE The genome of the Wolf Eel (Anarrhichthys ocellatus) JOURNAL Unpublished REFERENCE 2 (bases 1 to 33924) AUTHORS Culibrk,L., Leelakumari,S., Taylor,G.A., Tse,K., Cheng,D., Chuah,E., Kirk,H., Pandoh,P., Troussard,A., Zhao,Y., Mungall,A., Moore,R., Marra,M.A. and Jones,S.J.M. TITLE Direct Submission JOURNAL Submitted (03-JAN-2019) Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, #100 570 7th Ave, Vancouver, British Columbia V5Z 4S6, Canada COMMENT The Anarrhichthys ocellatus whole genome shotgun (WGS) project has the project accession SAUM00000000. This version of the project (01) has the accession number SAUM01000000, and consists of sequences SAUM01000001-SAUM01033924. ##Genome-Assembly-Data-START## Assembly Date :: OCT-2018 Assembly Method :: Supernova v. 2.1.1 Assembly Name :: GSC_Weel_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 45.0x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..33924 /organism="Anarrhichthys ocellatus" /mol_type="genomic DNA" /isolate="YVR2014" /db_xref="taxon:433405" /sex="female" /tissue_type="blood" /dev_stage="adult" WGS SAUM01000001-SAUM01033924 WGS_SCAFLD ML171004-ML173527 // LOCUS SAUL01000000 52085 rc DNA linear VRT 22-MAR-2019 DEFINITION Ophiodon elongatus isolate SJ_89, whole genome shotgun sequencing project. ACCESSION SAUL00000000 VERSION SAUL00000000.1 DBLINK BioProject: PRJNA496476 BioSample: SAMN10245457 KEYWORDS WGS. SOURCE Ophiodon elongatus ORGANISM Ophiodon elongatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Hexagrammales; Hexagrammidae; Ophiodon. REFERENCE 1 (bases 1 to 52085) AUTHORS Culibrk,L., Leelakumari,S., Taylor,G., Tse,K., Cheng,D., Chuah,E., Kirk,H., Pandoh,P., Troussard,A., Zhao,Y., Mungall,A., Moore,R., Marra,M.A. and Jones,S.J.M. TITLE The genome of the Ling Cod (Ophiodon elongatus) JOURNAL Unpublished REFERENCE 2 (bases 1 to 52085) AUTHORS Culibrk,L., Leelakumari,S., Taylor,G., Tse,K., Cheng,D., Chuah,E., Kirk,H., Pandoh,P., Troussard,A., Zhao,Y., Mungall,A., Moore,R., Marra,M.A. and Jones,S.J.M. TITLE Direct Submission JOURNAL Submitted (03-JAN-2019) Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, #100 570 7th Ave, Vancouver, British Columbia V5Z 4S6, Canada COMMENT The Ophiodon elongatus whole genome shotgun (WGS) project has the project accession SAUL00000000. This version of the project (01) has the accession number SAUL01000000, and consists of sequences SAUL01000001-SAUL01052085. Contig SAUL01052085 was removed from the assembly at the submitter's request because the sequence could not be confirmed. ##Genome-Assembly-Data-START## Assembly Date :: OCT-2018 Assembly Method :: Supernova v. 2.1.1 Assembly Name :: GSC_LCod_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 40.0x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..52085 /organism="Ophiodon elongatus" /mol_type="genomic DNA" /isolate="SJ_89" /db_xref="taxon:225387" /sex="female" /tissue_type="blood" /dev_stage="adult" WGS SAUL01000001-SAUL01052085 WGS_SCAFLD ML173528-ML178711 // LOCUS RXNX01000000 21603 rc DNA linear MAM 13-MAR-2019 DEFINITION Phoca vitulina isolate PV1807, whole genome shotgun sequencing project. ACCESSION RXNX00000000 VERSION RXNX00000000.1 DBLINK BioProject: PRJNA494181 BioSample: SAMN10150265 KEYWORDS WGS. SOURCE Phoca vitulina (harbor seal) ORGANISM Phoca vitulina Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Phocidae; Phoca. REFERENCE 1 (bases 1 to 21603) AUTHORS Culibrk,L., Leelakumari,S., Taylor,G.A., Tse,K., Cheng,D., Chuah,E., Kirk,H., Pandoh,P., Troussard,A., Zhao,Y., Mungall,A., Moore,R., Akhurst,L., Marra,M.A., Haulena,M. and Jones,S.J.M. TITLE The genome of the Harbour Seal (Phoca vitulina) JOURNAL Unpublished REFERENCE 2 (bases 1 to 21603) AUTHORS Culibrk,L., Leelakumari,S., Taylor,G.A., Tse,K., Cheng,D., Chuah,E., Kirk,H., Pandoh,P., Troussard,A., Zhao,Y., Mungall,A., Moore,R., Akhurst,L., Marra,M.A., Haulena,M. and Jones,S.J.M. TITLE Direct Submission JOURNAL Submitted (17-DEC-2018) Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, 100 570 7th Ave, Vancouver, British Columbia V5Z 4S6, Canada COMMENT The Phoca vitulina whole genome shotgun (WGS) project has the project accession RXNX00000000. This version of the project (01) has the accession number RXNX01000000, and consists of sequences RXNX01000001-RXNX01021603. ##Genome-Assembly-Data-START## Assembly Date :: OCT-2018 Assembly Method :: Supernova v. 2.1.1 Assembly Name :: GSC_HSeal_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 45.0x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..21603 /organism="Phoca vitulina" /mol_type="genomic DNA" /isolate="PV1807" /db_xref="taxon:9720" /sex="female" /tissue_type="blood" /dev_stage="Pup" /country="Canada: Boundary Bay, Tsawwassen, British Columbia" WGS RXNX01000001-RXNX01021603 WGS_SCAFLD ML169390-ML170155 // LOCUS CAABQF010000000 2242 rc DNA linear VRT 10-JAN-2019 DEFINITION Parambassis ranga, whole genome shotgun sequencing project. ACCESSION CAABQF000000000 VERSION CAABQF000000000.1 DBLINK BioProject: PRJEB30258 BioSample: SAMEA4675621 KEYWORDS WGS. SOURCE Parambassis ranga (Indian glassy fish) ORGANISM Parambassis ranga Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Ambassidae; Parambassis. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (07-DEC-2018) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Parambassis ranga whole genome shotgun (WGS) project has the project accession CAABQF000000000. This version of the project (01) has the accession number CAABQF010000000, and consists of sequences CAABQF010000001-CAABQF010002242. FEATURES Location/Qualifiers source 1..2242 /organism="Parambassis ranga" /mol_type="genomic DNA" /db_xref="taxon:210632" WGS CAABQF010000001-CAABQF010002242 // LOCUS CAABOW010000000 7674 rc DNA linear VRT 10-JAN-2019 DEFINITION Gouania willdenowi, whole genome shotgun sequencing project. ACCESSION CAABOW000000000 VERSION CAABOW000000000.1 DBLINK BioProject: PRJEB30360 BioSample: SAMEA104026382 KEYWORDS WGS. SOURCE Gouania willdenowi (blunt-snouted clingfish) ORGANISM Gouania willdenowi Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Blenniimorphae; Blenniiformes; Gobiesocoidei; Gobiesocidae; Gobiesocinae; Gouania. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (14-DEC-2018) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Gouania willdenowi whole genome shotgun (WGS) project has the project accession CAABOW000000000. This version of the project (01) has the accession number CAABOW010000000, and consists of sequences CAABOW010000001-CAABOW010007674. FEATURES Location/Qualifiers source 1..7674 /organism="Gouania willdenowi" /mol_type="genomic DNA" /db_xref="taxon:441366" WGS CAABOW010000001-CAABOW010007674 // LOCUS CAAAFL010000000 11555 rc DNA linear VRT 17-DEC-2018 DEFINITION Cottoperca gobio, whole genome shotgun sequencing project. ACCESSION CAAAFL000000000 VERSION CAAAFL000000000.1 DBLINK BioProject: PRJEB30256 BioSample: SAMEA104242975 KEYWORDS WGS. SOURCE Cottoperca gobio ORGANISM Cottoperca gobio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Bovichtidae; Cottoperca. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (07-DEC-2018) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Cottoperca gobio whole genome shotgun (WGS) project has the project accession CAAAFL000000000. This version of the project (01) has the accession number CAAAFL010000000, and consists of sequences CAAAFL010000001-CAAAFL010011555. FEATURES Location/Qualifiers source 1..11555 /organism="Cottoperca gobio" /mol_type="genomic DNA" /db_xref="taxon:56716" WGS CAAAFL010000001-CAAAFL010011555 // LOCUS CAABOV010000000 2641 rc DNA linear VRT 10-JAN-2019 DEFINITION Anabas testudineus, whole genome shotgun sequencing project. ACCESSION CAABOV000000000 VERSION CAABOV000000000.1 DBLINK BioProject: PRJEB30391 BioSample: SAMEA104026376 KEYWORDS WGS. SOURCE Anabas testudineus (climbing perch) ORGANISM Anabas testudineus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Anabantiformes; Anabantoidei; Anabantidae; Anabas. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (17-DEC-2018) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Anabas testudineus whole genome shotgun (WGS) project has the project accession CAABOV000000000. This version of the project (01) has the accession number CAABOV010000000, and consists of sequences CAABOV010000001-CAABOV010002641. FEATURES Location/Qualifiers source 1..2641 /organism="Anabas testudineus" /mol_type="genomic DNA" /db_xref="taxon:64144" WGS CAABOV010000001-CAABOV010002641 // LOCUS CAABQE010000000 3705 rc DNA linear VRT 10-JAN-2019 DEFINITION Betta splendens, whole genome shotgun sequencing project. ACCESSION CAABQE000000000 VERSION CAABQE000000000.1 DBLINK BioProject: PRJEB30366 BioSample: SAMEA104381735 KEYWORDS WGS. SOURCE Betta splendens (Siamese fighting fish) ORGANISM Betta splendens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Anabantiformes; Anabantoidei; Osphronemidae; Betta. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (14-DEC-2018) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Betta splendens whole genome shotgun (WGS) project has the project accession CAABQE000000000. This version of the project (01) has the accession number CAABQE010000000, and consists of sequences CAABQE010000001-CAABQE010003705. FEATURES Location/Qualifiers source 1..3705 /organism="Betta splendens" /mol_type="genomic DNA" /db_xref="taxon:158456" WGS CAABQE010000001-CAABQE010003705 // LOCUS CAAAFJ010000000 298 rc DNA linear VRT 17-DEC-2018 DEFINITION Cottoperca gobio, whole genome shotgun sequencing project. ACCESSION CAAAFJ000000000 VERSION CAAAFJ000000000.1 DBLINK BioProject: PRJEB30248 BioSample: SAMEA104242975 KEYWORDS WGS. SOURCE Cottoperca gobio ORGANISM Cottoperca gobio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Bovichtidae; Cottoperca. REFERENCE 1 CONSRTM Wellcome Sanger Institute Data Sharing TITLE Direct Submission JOURNAL Submitted (07-DEC-2018) SC, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom COMMENT The Cottoperca gobio whole genome shotgun (WGS) project has the project accession CAAAFJ000000000. This version of the project (01) has the accession number CAAAFJ010000000, and consists of sequences CAAAFJ010000001-CAAAFJ010000298. FEATURES Location/Qualifiers source 1..298 /organism="Cottoperca gobio" /mol_type="genomic DNA" /db_xref="taxon:56716" WGS CAAAFJ010000001-CAAAFJ010000298 // LOCUS PVKH010000000 7677333 rc DNA linear MAM 16-JAN-2019 DEFINITION Chaetophractus vellerosus isolate US068, whole genome shotgun sequencing project. ACCESSION PVKH000000000 VERSION PVKH000000000.1 DBLINK BioProject: PRJNA399381 BioSample: SAMN07678071 KEYWORDS WGS. SOURCE Chaetophractus vellerosus (Screaming hairy armadillo) ORGANISM Chaetophractus vellerosus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Xenarthra; Cingulata; Chlamyphoridae; Chaetophractus. REFERENCE 1 (bases 1 to 7677333) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 7677333) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Chaetophractus vellerosus whole genome shotgun (WGS) project has the project accession PVKH000000000. This version of the project (01) has the accession number PVKH010000000, and consists of sequences PVKH010000001-PVKH017677333. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: ChaVel_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 22.9x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..7677333 /organism="Chaetophractus vellerosus" /mol_type="genomic DNA" /isolate="US068" /db_xref="taxon:340076" /dev_stage="adult" WGS PVKH010000001-PVKH017677333 // LOCUS PVKN010000000 2352358 rc DNA linear ROD 16-JAN-2019 DEFINITION Capromys pilorides isolate US015, whole genome shotgun sequencing project. ACCESSION PVKN000000000 VERSION PVKN000000000.1 DBLINK BioProject: PRJNA399377 BioSample: SAMN07678066 KEYWORDS WGS. SOURCE Capromys pilorides (Desmarest's hutia) ORGANISM Capromys pilorides Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Capromyidae; Capromys. REFERENCE 1 (bases 1 to 2352358) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 2352358) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Capromys pilorides whole genome shotgun (WGS) project has the project accession PVKN000000000. This version of the project (01) has the accession number PVKN010000000, and consists of sequences PVKN010000001-PVKN012352358. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: CapPil_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 26.1x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..2352358 /organism="Capromys pilorides" /mol_type="genomic DNA" /isolate="US015" /db_xref="taxon:34842" /sex="female" /dev_stage="adult" WGS PVKN010000001-PVKN012352358 // LOCUS PVIV010000000 1937143 rc DNA linear PRI 16-JAN-2019 DEFINITION Nycticebus coucang isolate BS32, whole genome shotgun sequencing project. ACCESSION PVIV000000000 VERSION PVIV000000000.1 DBLINK BioProject: PRJNA399409 BioSample: SAMN07678100 KEYWORDS WGS. SOURCE Nycticebus coucang (slow loris) ORGANISM Nycticebus coucang Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lorisiformes; Lorisidae; Nycticebus. REFERENCE 1 (bases 1 to 1937143) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1937143) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (07-JAN-2019) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Nycticebus coucang whole genome shotgun (WGS) project has the project accession PVIV000000000. This version of the project (01) has the accession number PVIV010000000, and consists of sequences PVIV010000001-PVIV011937143. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: NycCou_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 32.3x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1937143 /organism="Nycticebus coucang" /mol_type="genomic DNA" /isolate="BS32" /db_xref="taxon:9470" /dev_stage="adult" WGS PVIV010000001-PVIV011937143 // LOCUS PVKI010000000 2119200 rc DNA linear PRI 16-JAN-2019 DEFINITION Cercopithecus neglectus isolate BS29, whole genome shotgun sequencing project. ACCESSION PVKI000000000 VERSION PVKI000000000.1 DBLINK BioProject: PRJNA399380 BioSample: SAMN07678070 KEYWORDS WGS. SOURCE Cercopithecus neglectus (De Brazza's monkey) ORGANISM Cercopithecus neglectus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Cercopithecus. REFERENCE 1 (bases 1 to 2119200) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 2119200) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Cercopithecus neglectus whole genome shotgun (WGS) project has the project accession PVKI000000000. This version of the project (01) has the accession number PVKI010000000, and consists of sequences PVKI010000001-PVKI012119200. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: CertNeg_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 27.5x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..2119200 /organism="Cercopithecus neglectus" /mol_type="genomic DNA" /isolate="BS29" /db_xref="taxon:36227" /dev_stage="adult" WGS PVKI010000001-PVKI012119200 // LOCUS PVKF010000000 3428078 rc DNA linear MAM 16-JAN-2019 DEFINITION Chrysochloris asiatica isolate BS56, whole genome shotgun sequencing project. ACCESSION PVKF000000000 VERSION PVKF000000000.1 DBLINK BioProject: PRJNA399474 BioSample: SAMN07678135 KEYWORDS WGS. SOURCE Chrysochloris asiatica (Cape golden mole) ORGANISM Chrysochloris asiatica Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Chrysochloridae; Chrysochlorinae; Chrysochloris. REFERENCE 1 (bases 1 to 3428078) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 3428078) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Chrysochloris asiatica whole genome shotgun (WGS) project has the project accession PVKF000000000. This version of the project (01) has the accession number PVKF010000000, and consists of sequences PVKF010000001-PVKF013428078. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: ChrAsi_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 25x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..3428078 /organism="Chrysochloris asiatica" /mol_type="genomic DNA" /isolate="BS56" /db_xref="taxon:185453" /sex="female" /dev_stage="adult" WGS PVKF010000001-PVKF013428078 // LOCUS PVKM010000000 1925339 rc DNA linear MAM 16-JAN-2019 DEFINITION Carollia perspicillata isolate US073, whole genome shotgun sequencing project. ACCESSION PVKM000000000 VERSION PVKM000000000.1 DBLINK BioProject: PRJNA399439 BioSample: SAMN07678055 KEYWORDS WGS. SOURCE Carollia perspicillata (Seba's short-tailed bat) ORGANISM Carollia perspicillata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Phyllostomidae; Carolliinae; Carollia. REFERENCE 1 (bases 1 to 1925339) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1925339) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Carollia perspicillata whole genome shotgun (WGS) project has the project accession PVKM000000000. This version of the project (01) has the accession number PVKM010000000, and consists of sequences PVKM010000001-PVKM011925339. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: CarPer_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 27.7x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1925339 /organism="Carollia perspicillata" /mol_type="genomic DNA" /isolate="US073" /db_xref="taxon:40233" /dev_stage="adult" WGS PVKM010000001-PVKM011925339 // LOCUS PVKW010000000 1284382 rc DNA linear ROD 16-JAN-2019 DEFINITION Orientallactaga bullata isolate US110, whole genome shotgun sequencing project. ACCESSION PVKW000000000 VERSION PVKW000000000.1 DBLINK BioProject: PRJNA399447 BioSample: SAMN07678035 KEYWORDS WGS. SOURCE Orientallactaga bullata ORGANISM Orientallactaga bullata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Dipodoidea; Dipodidae; Allactaginae; Orientallactaga. REFERENCE 1 (bases 1 to 1284382) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1284382) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Orientallactaga bullata whole genome shotgun (WGS) project has the project accession PVKW000000000. This version of the project (01) has the accession number PVKW010000000, and consists of sequences PVKW010000001-PVKW011284382. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: AllBul_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 29.1x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1284382 /organism="Orientallactaga bullata" /mol_type="genomic DNA" /isolate="US110" /db_xref="taxon:1041416" /dev_stage="adult" WGS PVKW010000001-PVKW011284382 // LOCUS PVKJ010000000 1539166 rc DNA linear PRI 16-JAN-2019 DEFINITION Cebus albifrons isolate BS31, whole genome shotgun sequencing project. ACCESSION PVKJ000000000 VERSION PVKJ000000000.1 DBLINK BioProject: PRJNA399379 BioSample: SAMN07678068 KEYWORDS WGS. SOURCE Cebus albifrons (white-fronted capuchin) ORGANISM Cebus albifrons Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Cebinae; Cebus. REFERENCE 1 (bases 1 to 1539166) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1539166) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Cebus albifrons whole genome shotgun (WGS) project has the project accession PVKJ000000000. This version of the project (01) has the accession number PVKJ010000000, and consists of sequences PVKJ010000001-PVKJ011539166. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: CebAlb_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 28.8x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1539166 /organism="Cebus albifrons" /mol_type="genomic DNA" /isolate="BS31" /db_xref="taxon:9514" /dev_stage="adult" WGS PVKJ010000001-PVKJ011539166 // LOCUS PVKS010000000 1279526 rc DNA linear ROD 16-JAN-2019 DEFINITION Aplodontia rufa isolate BS102, whole genome shotgun sequencing project. ACCESSION PVKS000000000 VERSION PVKS000000000.1 DBLINK BioProject: PRJNA399342 BioSample: SAMN07678037 KEYWORDS WGS. SOURCE Aplodontia rufa (mountain beaver) ORGANISM Aplodontia rufa Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Aplodontiidae; Aplodontia. REFERENCE 1 (bases 1 to 1279526) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1279526) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Aplodontia rufa whole genome shotgun (WGS) project has the project accession PVKS000000000. This version of the project (01) has the accession number PVKS010000000, and consists of sequences PVKS010000001-PVKS011279526. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: AplRuf_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 30.6x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1279526 /organism="Aplodontia rufa" /mol_type="genomic DNA" /isolate="BS102" /db_xref="taxon:51342" /dev_stage="adult" WGS PVKS010000001-PVKS011279526 // LOCUS PVKK010000000 1368179 rc DNA linear ROD 16-JAN-2019 DEFINITION Cavia tschudii isolate US050, whole genome shotgun sequencing project. ACCESSION PVKK000000000 VERSION PVKK000000000.1 DBLINK BioProject: PRJNA399343 BioSample: SAMN07678017 KEYWORDS WGS. SOURCE Cavia tschudii (Montane guinea pig) ORGANISM Cavia tschudii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia. REFERENCE 1 (bases 1 to 1368179) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1368179) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Cavia tschudii whole genome shotgun (WGS) project has the project accession PVKK000000000. This version of the project (01) has the accession number PVKK010000000, and consists of sequences PVKK010000001-PVKK011368179. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: CavTsc_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 34.8x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1368179 /organism="Cavia tschudii" /mol_type="genomic DNA" /isolate="US050" /db_xref="taxon:143287" /dev_stage="adult" WGS PVKK010000001-PVKK011368179 // LOCUS PVKV010000000 1136565 rc DNA linear PRI 16-JAN-2019 DEFINITION Alouatta palliata isolate BS02, whole genome shotgun sequencing project. ACCESSION PVKV000000000 VERSION PVKV000000000.1 DBLINK BioProject: PRJNA399372 BioSample: SAMN07678036 KEYWORDS WGS. SOURCE Alouatta palliata (mantled howler monkey) ORGANISM Alouatta palliata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Atelidae; Alouattinae; Alouatta. REFERENCE 1 (bases 1 to 1136565) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1136565) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Alouatta palliata whole genome shotgun (WGS) project has the project accession PVKV000000000. This version of the project (01) has the accession number PVKV010000000, and consists of sequences PVKV010000001-PVKV011136565. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: AloPal_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 43.1x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1136565 /organism="Alouatta palliata" /mol_type="genomic DNA" /isolate="BS02" /db_xref="taxon:30589" /dev_stage="adult" WGS PVKV010000001-PVKV011136565 // LOCUS PVLC010000000 1267939 rc DNA linear ROD 16-JAN-2019 DEFINITION Graphiurus murinus isolate US067, whole genome shotgun sequencing project. ACCESSION PVLC000000000 VERSION PVLC000000000.1 DBLINK BioProject: PRJNA399395 BioSample: SAMN07678085 KEYWORDS WGS. SOURCE Graphiurus murinus (woodland dormouse) ORGANISM Graphiurus murinus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Gliridae; Graphiurinae; Graphiurus. REFERENCE 1 (bases 1 to 1267939) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1267939) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (26-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Graphiurus murinus whole genome shotgun (WGS) project has the project accession PVLC000000000. This version of the project (01) has the accession number PVLC010000000, and consists of sequences PVLC010000001-PVLC011267939. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: GraMur_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 35x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1267939 /organism="Graphiurus murinus" /mol_type="genomic DNA" /isolate="US067" /db_xref="taxon:51346" /dev_stage="adult" WGS PVLC010000001-PVLC011267939 // LOCUS PVKC010000000 2415412 rc DNA linear MAM 16-JAN-2019 DEFINITION Crocidura indochinensis isolate US011, whole genome shotgun sequencing project. ACCESSION PVKC000000000 VERSION PVKC000000000.1 DBLINK BioProject: PRJNA399360 BioSample: SAMN07678044 KEYWORDS WGS. SOURCE Crocidura indochinensis ORGANISM Crocidura indochinensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Soricidae; Crocidurinae; Crocidura. REFERENCE 1 (bases 1 to 2415412) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 2415412) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Crocidura indochinensis whole genome shotgun (WGS) project has the project accession PVKC000000000. This version of the project (01) has the accession number PVKC010000000, and consists of sequences PVKC010000001-PVKC012415412. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: CroInd_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 32.2x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..2415412 /organism="Crocidura indochinensis" /mol_type="genomic DNA" /isolate="US011" /db_xref="taxon:876679" /dev_stage="adult" WGS PVKC010000001-PVKC012415412 // LOCUS PVLE01000000 942426 rc DNA linear MAM 16-JAN-2019 DEFINITION Ceratotherium simum cottoni isolate BS59, whole genome shotgun sequencing project. ACCESSION PVLE00000000 VERSION PVLE00000000.1 DBLINK BioProject: PRJNA399457 BioSample: SAMN07678069 KEYWORDS WGS. SOURCE Ceratotherium simum cottoni (northern white rhinoceros) ORGANISM Ceratotherium simum cottoni Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Rhinocerotidae; Ceratotherium. REFERENCE 1 (bases 1 to 942426) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 942426) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (26-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Ceratotherium simum cottoni whole genome shotgun (WGS) project has the project accession PVLE00000000. This version of the project (01) has the accession number PVLE01000000, and consists of sequences PVLE01000001-PVLE01942426. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: CerCot_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 29.2x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..942426 /organism="Ceratotherium simum cottoni" /mol_type="genomic DNA" /isolate="BS59" /sub_species="cottoni" /db_xref="taxon:310713" /sex="female" /dev_stage="adult" WGS PVLE01000001-PVLE01942426 // LOCUS PVKG010000000 2532333 rc DNA linear MAM 16-JAN-2019 DEFINITION Choloepus didactylus isolate US054, whole genome shotgun sequencing project. ACCESSION PVKG000000000 VERSION PVKG000000000.1 DBLINK BioProject: PRJNA399383 BioSample: SAMN07678073 KEYWORDS WGS. SOURCE Choloepus didactylus (southern two-toed sloth) ORGANISM Choloepus didactylus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Xenarthra; Pilosa; Folivora; Megalonychidae; Choloepus. REFERENCE 1 (bases 1 to 2532333) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 2532333) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Choloepus didactylus whole genome shotgun (WGS) project has the project accession PVKG000000000. This version of the project (01) has the accession number PVKG010000000, and consists of sequences PVKG010000001-PVKG012532333. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: ChoDid_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 19.6x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..2532333 /organism="Choloepus didactylus" /mol_type="genomic DNA" /isolate="US054" /db_xref="taxon:27675" /dev_stage="adult" WGS PVKG010000001-PVKG012532333 // LOCUS PVLD010000000 1158438 rc DNA linear ROD 16-JAN-2019 DEFINITION Dinomys branickii isolate US070, whole genome shotgun sequencing project. ACCESSION PVLD000000000 VERSION PVLD000000000.1 DBLINK BioProject: PRJNA399389 BioSample: SAMN07678079 KEYWORDS WGS. SOURCE Dinomys branickii (pacarana) ORGANISM Dinomys branickii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Dinomyidae; Dinomys. REFERENCE 1 (bases 1 to 1158438) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1158438) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (26-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Dinomys branickii whole genome shotgun (WGS) project has the project accession PVLD000000000. This version of the project (01) has the accession number PVLD010000000, and consists of sequences PVLD010000001-PVLD011158438. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: DinBra_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 31.9x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1158438 /organism="Dinomys branickii" /mol_type="genomic DNA" /isolate="US070" /db_xref="taxon:108858" /dev_stage="adult" WGS PVLD010000001-PVLD011158438 // LOCUS PVKY010000000 1771805 rc DNA linear MAM 16-JAN-2019 DEFINITION Bradypus variegatus isolate BS16, whole genome shotgun sequencing project. ACCESSION PVKY000000000 VERSION PVKY000000000.1 DBLINK BioProject: PRJNA399370 BioSample: SAMN07678054 KEYWORDS WGS. SOURCE Bradypus variegatus (Brown-throated sloth) ORGANISM Bradypus variegatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Xenarthra; Pilosa; Folivora; Bradypodidae; Bradypus. REFERENCE 1 (bases 1 to 1771805) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1771805) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (26-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Bradypus variegatus whole genome shotgun (WGS) project has the project accession PVKY000000000. This version of the project (01) has the accession number PVKY010000000, and consists of sequences PVKY010000001-PVKY011771805. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: BraVar_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 57.9x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1771805 /organism="Bradypus variegatus" /mol_type="genomic DNA" /isolate="BS16" /db_xref="taxon:9355" /dev_stage="adult" WGS PVKY010000001-PVKY011771805 // LOCUS PVKP010000000 1033983 rc DNA linear PRI 16-JAN-2019 DEFINITION Plecturocebus donacophilus isolate BS44, whole genome shotgun sequencing project. ACCESSION PVKP000000000 VERSION PVKP000000000.1 DBLINK BioProject: PRJNA399376 BioSample: SAMN07678140 KEYWORDS WGS. SOURCE Plecturocebus donacophilus (Bolivian titi) ORGANISM Plecturocebus donacophilus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Pitheciidae; Callicebinae; Plecturocebus. REFERENCE 1 (bases 1 to 1033983) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1033983) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Plecturocebus donacophilus whole genome shotgun (WGS) project has the project accession PVKP000000000. This version of the project (01) has the accession number PVKP010000000, and consists of sequences PVKP010000001-PVKP011033983. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: CalDon_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 23.7x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1033983 /organism="Plecturocebus donacophilus" /mol_type="genomic DNA" /isolate="BS44" /db_xref="taxon:230833" /sex="female" /dev_stage="adult" WGS PVKP010000001-PVKP011033983 // LOCUS PVKL01000000 832147 rc DNA linear ROD 16-JAN-2019 DEFINITION Castor canadensis isolate US014, whole genome shotgun sequencing project. ACCESSION PVKL00000000 VERSION PVKL00000000.1 DBLINK BioProject: PRJNA399431 BioSample: SAMN07678136 KEYWORDS WGS. SOURCE Castor canadensis (American beaver) ORGANISM Castor canadensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Castoridae; Castor. REFERENCE 1 (bases 1 to 832147) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 832147) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Castor canadensis whole genome shotgun (WGS) project has the project accession PVKL00000000. This version of the project (01) has the accession number PVKL01000000, and consists of sequences PVKL01000001-PVKL01832147. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: CasCan_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 30.4x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..832147 /organism="Castor canadensis" /mol_type="genomic DNA" /isolate="US014" /db_xref="taxon:51338" /dev_stage="adult" WGS PVKL01000001-PVKL01832147 // LOCUS PVKD010000000 1102952 rc DNA linear ROD 16-JAN-2019 DEFINITION Cricetomys gambianus isolate US082, whole genome shotgun sequencing project. ACCESSION PVKD000000000 VERSION PVKD000000000.1 DBLINK BioProject: PRJNA399436 BioSample: SAMN07678025 KEYWORDS WGS. SOURCE Cricetomys gambianus (Gambian giant pouched rat) ORGANISM Cricetomys gambianus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Nesomyidae; Cricetomyinae; Cricetomys. REFERENCE 1 (bases 1 to 1102952) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1102952) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Cricetomys gambianus whole genome shotgun (WGS) project has the project accession PVKD000000000. This version of the project (01) has the accession number PVKD010000000, and consists of sequences PVKD010000001-PVKD011102952. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: CriGam_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 36.7x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1102952 /organism="Cricetomys gambianus" /mol_type="genomic DNA" /isolate="US082" /db_xref="taxon:10085" /dev_stage="adult" WGS PVKD010000001-PVKD011102952 // LOCUS PVLB01000000 840200 rc DNA linear MAM 16-JAN-2019 DEFINITION Hipposideros galeritus isolate US101, whole genome shotgun sequencing project. ACCESSION PVLB00000000 VERSION PVLB00000000.1 DBLINK BioProject: PRJNA399442 BioSample: SAMN07678026 KEYWORDS WGS. SOURCE Hipposideros galeritus (Cantor's roundleaf bat) ORGANISM Hipposideros galeritus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Hipposideridae; Hipposideros. REFERENCE 1 (bases 1 to 840200) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 840200) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (27-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Hipposideros galeritus whole genome shotgun (WGS) project has the project accession PVLB00000000. This version of the project (01) has the accession number PVLB01000000, and consists of sequences PVLB01000001-PVLB01840200. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: HipGal_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 46x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..840200 /organism="Hipposideros galeritus" /mol_type="genomic DNA" /isolate="US101" /db_xref="taxon:58069" /dev_stage="adult" WGS PVLB01000001-PVLB01840200 // LOCUS PVKR01000000 794376 rc DNA linear MAM 16-JAN-2019 DEFINITION Artibeus jamaicensis isolate US092, whole genome shotgun sequencing project. ACCESSION PVKR00000000 VERSION PVKR00000000.1 DBLINK BioProject: PRJNA399471 BioSample: SAMN07678132 KEYWORDS WGS. SOURCE Artibeus jamaicensis (Jamaican fruit-eating bat) ORGANISM Artibeus jamaicensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Phyllostomidae; Stenodermatinae; Artibeus. REFERENCE 1 (bases 1 to 794376) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 794376) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Artibeus jamaicensis whole genome shotgun (WGS) project has the project accession PVKR00000000. This version of the project (01) has the accession number PVKR01000000, and consists of sequences PVKR01000001-PVKR01794376. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: ArtJam_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 30.2x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..794376 /organism="Artibeus jamaicensis" /mol_type="genomic DNA" /isolate="US092" /db_xref="taxon:9417" /dev_stage="adult" WGS PVKR01000001-PVKR01794376 // LOCUS PVKO01000000 656742 rc DNA linear MAM 16-JAN-2019 DEFINITION Canis lupus familiaris isolate BS72, whole genome shotgun sequencing project. ACCESSION PVKO00000000 VERSION PVKO00000000.1 DBLINK BioProject: PRJNA399441 BioSample: SAMN07678141 KEYWORDS WGS. SOURCE Canis lupus familiaris (dog) ORGANISM Canis lupus familiaris Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. REFERENCE 1 (bases 1 to 656742) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 656742) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Canis lupus familiaris whole genome shotgun (WGS) project has the project accession PVKO00000000. This version of the project (01) has the accession number PVKO01000000, and consists of sequences PVKO01000001-PVKO01656742. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: CanFam_VD_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 66.5x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..656742 /organism="Canis lupus familiaris" /mol_type="genomic DNA" /isolate="BS72" /sub_species="familiaris" /db_xref="taxon:9615" /dev_stage="adult" WGS PVKO01000001-PVKO01656742 // LOCUS PVKX01000000 371342 rc DNA linear ROD 16-JAN-2019 DEFINITION Acomys cahirinus isolate US019, whole genome shotgun sequencing project. ACCESSION PVKX00000000 VERSION PVKX00000000.1 DBLINK BioProject: PRJNA399339 BioSample: SAMN07678032 KEYWORDS WGS. SOURCE Acomys cahirinus (Egyptian spiny mouse) ORGANISM Acomys cahirinus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Deomyinae; Acomys. REFERENCE 1 (bases 1 to 371342) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 371342) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Acomys cahirinus whole genome shotgun (WGS) project has the project accession PVKX00000000. This version of the project (01) has the accession number PVKX01000000, and consists of sequences PVKX01000001-PVKX01371342. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: AcoCah_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 32.7x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..371342 /organism="Acomys cahirinus" /mol_type="genomic DNA" /isolate="US019" /db_xref="taxon:10068" /sex="female" /dev_stage="adult" WGS PVKX01000001-PVKX01371342 // LOCUS PVKQ01000000 535889 rc DNA linear MAM 16-JAN-2019 DEFINITION Beatragus hunteri isolate BS46, whole genome shotgun sequencing project. ACCESSION PVKQ00000000 VERSION PVKQ00000000.1 DBLINK BioProject: PRJNA399375 BioSample: SAMN07678065 KEYWORDS WGS. SOURCE Beatragus hunteri ORGANISM Beatragus hunteri Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Alcelaphinae; Beatragus. REFERENCE 1 (bases 1 to 535889) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 535889) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Beatragus hunteri whole genome shotgun (WGS) project has the project accession PVKQ00000000. This version of the project (01) has the accession number PVKQ01000000, and consists of sequences PVKQ01000001-PVKQ01535889. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: BeaHun_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 23.1x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..535889 /organism="Beatragus hunteri" /mol_type="genomic DNA" /isolate="BS46" /db_xref="taxon:59527" /sex="female" /dev_stage="adult" WGS PVKQ01000001-PVKQ01535889 // LOCUS PVKE010000000 1224256 rc DNA linear MAM 16-JAN-2019 DEFINITION Craseonycteris thonglongyai isolate US097, whole genome shotgun sequencing project. ACCESSION PVKE000000000 VERSION PVKE000000000.1 DBLINK BioProject: PRJNA399445 BioSample: SAMN07678039 KEYWORDS WGS. SOURCE Craseonycteris thonglongyai (hog-nosed bat) ORGANISM Craseonycteris thonglongyai Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Craseonycteridae; Craseonycteris. REFERENCE 1 (bases 1 to 1224256) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1224256) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Craseonycteris thonglongyai whole genome shotgun (WGS) project has the project accession PVKE000000000. This version of the project (01) has the accession number PVKE010000000, and consists of sequences PVKE010000001-PVKE011224256. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: CraTho_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 52.2x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1224256 /organism="Craseonycteris thonglongyai" /mol_type="genomic DNA" /isolate="US097" /db_xref="taxon:208972" /dev_stage="adult" WGS PVKE010000001-PVKE011224256 // LOCUS PVKU01000000 337255 rc DNA linear MAM 16-JAN-2019 DEFINITION Anoura caudifer isolate US021, whole genome shotgun sequencing project. ACCESSION PVKU00000000 VERSION PVKU00000000.1 DBLINK BioProject: PRJNA399350 BioSample: SAMN07678033 KEYWORDS WGS. SOURCE Anoura caudifer (tailed tailless bat) ORGANISM Anoura caudifer Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Phyllostomidae; Glossophaginae; Anoura. REFERENCE 1 (bases 1 to 337255) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 337255) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Anoura caudifer whole genome shotgun (WGS) project has the project accession PVKU00000000. This version of the project (01) has the accession number PVKU01000000, and consists of sequences PVKU01000001-PVKU01337255. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: AnoCau_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 52.5x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..337255 /organism="Anoura caudifer" /mol_type="genomic DNA" /isolate="US021" /db_xref="taxon:27642" /dev_stage="adult" WGS PVKU01000001-PVKU01337255 // LOCUS PVLA01000000 655342 rc DNA linear ROD 16-JAN-2019 DEFINITION Hydrochoerus hydrochaeris isolate US065, whole genome shotgun sequencing project. ACCESSION PVLA00000000 VERSION PVLA00000000.1 DBLINK BioProject: PRJNA399400 BioSample: SAMN07678143 KEYWORDS WGS. SOURCE Hydrochoerus hydrochaeris (capybara) ORGANISM Hydrochoerus hydrochaeris Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Hydrochaeridae; Hydrochoerus. REFERENCE 1 (bases 1 to 655342) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 655342) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (26-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Hydrochoerus hydrochaeris whole genome shotgun (WGS) project has the project accession PVLA00000000. This version of the project (01) has the accession number PVLA01000000, and consists of sequences PVLA01000001-PVLA01655342. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: HydHyd_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 28.2x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..655342 /organism="Hydrochoerus hydrochaeris" /mol_type="genomic DNA" /isolate="US065" /db_xref="taxon:10149" /dev_stage="adult" WGS PVLA01000001-PVLA01655342 // LOCUS PVKZ01000000 171985 rc DNA linear MAM 16-JAN-2019 DEFINITION Macroglossus sobrinus isolate US102, whole genome shotgun sequencing project. ACCESSION PVKZ00000000 VERSION PVKZ00000000.1 DBLINK BioProject: PRJNA399443 BioSample: SAMN07678028 KEYWORDS WGS. SOURCE Macroglossus sobrinus ORGANISM Macroglossus sobrinus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Megachiroptera; Pteropodidae; Macroglossinae; Macroglossus. REFERENCE 1 (bases 1 to 171985) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 171985) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (27-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Macroglossus sobrinus whole genome shotgun (WGS) project has the project accession PVKZ00000000. This version of the project (01) has the accession number PVKZ01000000, and consists of sequences PVKZ01000001-PVKZ01171985. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: MacSob_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 52.7x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..171985 /organism="Macroglossus sobrinus" /mol_type="genomic DNA" /isolate="US102" /db_xref="taxon:326083" /dev_stage="adult" WGS PVKZ01000001-PVKZ01171985 // LOCUS PVJW010000000 2475866 rc DNA linear MAM 16-JAN-2019 DEFINITION Elephantulus edwardii isolate BS57, whole genome shotgun sequencing project. ACCESSION PVJW000000000 VERSION PVJW000000000.1 DBLINK BioProject: PRJNA399475 BioSample: SAMN07678142 KEYWORDS WGS. SOURCE Elephantulus edwardii (Cape elephant shrew) ORGANISM Elephantulus edwardii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Macroscelidea; Macroscelididae; Elephantulus. REFERENCE 1 (bases 1 to 2475866) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 2475866) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Elephantulus edwardii whole genome shotgun (WGS) project has the project accession PVJW000000000. This version of the project (01) has the accession number PVJW010000000, and consists of sequences PVJW010000001-PVJW012475866. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: EleEdw_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 33x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..2475866 /organism="Elephantulus edwardii" /mol_type="genomic DNA" /isolate="BS57" /db_xref="taxon:28737" /sex="female" /dev_stage="adult" WGS PVJW010000001-PVJW012475866 // LOCUS PVJV010000000 2563960 rc DNA linear PRI 16-JAN-2019 DEFINITION Erythrocebus patas isolate BS28, whole genome shotgun sequencing project. ACCESSION PVJV000000000 VERSION PVJV000000000.1 DBLINK BioProject: PRJNA399392 BioSample: SAMN07678082 KEYWORDS WGS. SOURCE Erythrocebus patas (red guenon) ORGANISM Erythrocebus patas Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Erythrocebus. REFERENCE 1 (bases 1 to 2563960) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 2563960) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Erythrocebus patas whole genome shotgun (WGS) project has the project accession PVJV000000000. This version of the project (01) has the accession number PVJV010000000, and consists of sequences PVJV010000001-PVJV012563960. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: EryPat_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 43.7x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..2563960 /organism="Erythrocebus patas" /mol_type="genomic DNA" /isolate="BS28" /db_xref="taxon:9538" /dev_stage="adult" WGS PVJV010000001-PVJV012563960 // LOCUS PVJX010000000 1905764 rc DNA linear ROD 16-JAN-2019 DEFINITION Dolichotis patagonum isolate US062, whole genome shotgun sequencing project. ACCESSION PVJX000000000 VERSION PVJX000000000.1 DBLINK BioProject: PRJNA399391 BioSample: SAMN07678081 KEYWORDS WGS. SOURCE Dolichotis patagonum (Patagonian cavy) ORGANISM Dolichotis patagonum Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Dolichotis. REFERENCE 1 (bases 1 to 1905764) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1905764) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Dolichotis patagonum whole genome shotgun (WGS) project has the project accession PVJX000000000. This version of the project (01) has the accession number PVJX010000000, and consists of sequences PVJX010000001-PVJX011905764. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: DolPat_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 30.8x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1905764 /organism="Dolichotis patagonum" /mol_type="genomic DNA" /isolate="US062" /db_xref="taxon:29091" /dev_stage="adult" WGS PVJX010000001-PVJX011905764 // LOCUS PVJU010000000 1693913 rc DNA linear PRI 16-JAN-2019 DEFINITION Eulemur fulvus isolate BS10, whole genome shotgun sequencing project. ACCESSION PVJU000000000 VERSION PVJU000000000.1 DBLINK BioProject: PRJNA399393 BioSample: SAMN07678083 KEYWORDS WGS. SOURCE Eulemur fulvus (brown lemur) ORGANISM Eulemur fulvus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Lemuridae; Eulemur. REFERENCE 1 (bases 1 to 1693913) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1693913) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Eulemur fulvus whole genome shotgun (WGS) project has the project accession PVJU000000000. This version of the project (01) has the accession number PVJU010000000, and consists of sequences PVJU010000001-PVJU011693913. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: EulFul_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 63.5x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1693913 /organism="Eulemur fulvus" /mol_type="genomic DNA" /isolate="BS10" /db_xref="taxon:13515" /sex="female" /dev_stage="adult" WGS PVJU010000001-PVJU011693913 // LOCUS PVKB01000000 860073 rc DNA linear ROD 16-JAN-2019 DEFINITION Ctenodactylus gundi isolate US049, whole genome shotgun sequencing project. ACCESSION PVKB00000000 VERSION PVKB00000000.1 DBLINK BioProject: PRJNA399344 BioSample: SAMN07678018 KEYWORDS WGS. SOURCE Ctenodactylus gundi (northern gundi) ORGANISM Ctenodactylus gundi Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Ctenodactylidae; Ctenodactylus. REFERENCE 1 (bases 1 to 860073) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 860073) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Ctenodactylus gundi whole genome shotgun (WGS) project has the project accession PVKB00000000. This version of the project (01) has the accession number PVKB01000000, and consists of sequences PVKB01000001-PVKB01860073. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: CteGun_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 51x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..860073 /organism="Ctenodactylus gundi" /mol_type="genomic DNA" /isolate="US049" /db_xref="taxon:10166" /dev_stage="adult" WGS PVKB01000001-PVKB01860073 // LOCUS PVJS01000000 433430 rc DNA linear ROD 16-JAN-2019 DEFINITION Glis glis isolate US078, whole genome shotgun sequencing project. ACCESSION PVJS00000000 VERSION PVJS00000000.1 DBLINK BioProject: PRJNA399435 BioSample: SAMN07678015 KEYWORDS WGS. SOURCE Glis glis (Fat dormouse) ORGANISM Glis glis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Gliridae; Glirinae; Glis. REFERENCE 1 (bases 1 to 433430) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 433430) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Glis glis whole genome shotgun (WGS) project has the project accession PVJS00000000. This version of the project (01) has the accession number PVJS01000000, and consists of sequences PVJS01000001-PVJS01433430. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: GliGli_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 31.8x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..433430 /organism="Glis glis" /mol_type="genomic DNA" /isolate="US078" /db_xref="taxon:41261" /dev_stage="adult" WGS PVJS01000001-PVJS01433430 // LOCUS PVJZ01000000 342451 rc DNA linear PRI 16-JAN-2019 DEFINITION Daubentonia madagascariensis isolate BS11, whole genome shotgun sequencing project. ACCESSION PVJZ00000000 VERSION PVJZ00000000.1 DBLINK BioProject: PRJNA399387 BioSample: SAMN07678077 KEYWORDS WGS. SOURCE Daubentonia madagascariensis (aye-aye) ORGANISM Daubentonia madagascariensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Chiromyiformes; Daubentoniidae; Daubentonia. REFERENCE 1 (bases 1 to 342451) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 342451) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Daubentonia madagascariensis whole genome shotgun (WGS) project has the project accession PVJZ00000000. This version of the project (01) has the accession number PVJZ01000000, and consists of sequences PVJZ01000001-PVJZ01342451. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: DauMad_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 76.4x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..342451 /organism="Daubentonia madagascariensis" /mol_type="genomic DNA" /isolate="BS11" /db_xref="taxon:31869" /sex="female" /dev_stage="adult" WGS PVJZ01000001-PVJZ01342451 // LOCUS PVKA01000000 807571 rc DNA linear ROD 16-JAN-2019 DEFINITION Ctenomys sociabilis isolate BS34, whole genome shotgun sequencing project. ACCESSION PVKA00000000 VERSION PVKA00000000.1 DBLINK BioProject: PRJNA399368 BioSample: SAMN07678051 KEYWORDS WGS. SOURCE Ctenomys sociabilis (social tuco-tuco) ORGANISM Ctenomys sociabilis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Ctenomyidae; Ctenomys. REFERENCE 1 (bases 1 to 807571) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 807571) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Ctenomys sociabilis whole genome shotgun (WGS) project has the project accession PVKA00000000. This version of the project (01) has the accession number PVKA01000000, and consists of sequences PVKA01000001-PVKA01807571. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: CteSoc_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 26.5x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..807571 /organism="Ctenomys sociabilis" /mol_type="genomic DNA" /isolate="BS34" /db_xref="taxon:43321" /dev_stage="adult" WGS PVKA01000001-PVKA01807571 // LOCUS PVIX01000000 923815 rc DNA linear PRI 16-JAN-2019 DEFINITION Nasalis larvatus isolate BS101, whole genome shotgun sequencing project. ACCESSION PVIX00000000 VERSION PVIX00000000.1 DBLINK BioProject: PRJNA399408 BioSample: SAMN07678099 KEYWORDS WGS. SOURCE Nasalis larvatus (proboscis monkey) ORGANISM Nasalis larvatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Nasalis. REFERENCE 1 (bases 1 to 923815) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 923815) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Nasalis larvatus whole genome shotgun (WGS) project has the project accession PVIX00000000. This version of the project (01) has the accession number PVIX01000000, and consists of sequences PVIX01000001-PVIX01923815. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: NasLar_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 29.5x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..923815 /organism="Nasalis larvatus" /mol_type="genomic DNA" /isolate="BS101" /db_xref="taxon:43780" /sex="female" /dev_stage="adult" WGS PVIX01000001-PVIX01923815 // LOCUS PVIT010000000 2261735 rc DNA linear ROD 16-JAN-2019 DEFINITION Onychomys torridus isolate US017, whole genome shotgun sequencing project. ACCESSION PVIT000000000 VERSION PVIT000000000.1 DBLINK BioProject: PRJNA399348 BioSample: SAMN07678022 KEYWORDS WGS. SOURCE Onychomys torridus (southern grasshopper mouse) ORGANISM Onychomys torridus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Onychomys. REFERENCE 1 (bases 1 to 2261735) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 2261735) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Onychomys torridus whole genome shotgun (WGS) project has the project accession PVIT000000000. This version of the project (01) has the accession number PVIT010000000, and consists of sequences PVIT010000001-PVIT012261735. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: OnyTor_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 46.8x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..2261735 /organism="Onychomys torridus" /mol_type="genomic DNA" /isolate="US017" /db_xref="taxon:38674" /dev_stage="adult" WGS PVIT010000001-PVIT012261735 // LOCUS PVIU01000000 565356 rc DNA linear ROD 16-JAN-2019 DEFINITION Ondatra zibethicus isolate US110, whole genome shotgun sequencing project. ACCESSION PVIU00000000 VERSION PVIU00000000.1 DBLINK BioProject: PRJNA399451 BioSample: SAMN07678059 KEYWORDS WGS. SOURCE Ondatra zibethicus (muskrat) ORGANISM Ondatra zibethicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Ondatra. REFERENCE 1 (bases 1 to 565356) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 565356) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Ondatra zibethicus whole genome shotgun (WGS) project has the project accession PVIU00000000. This version of the project (01) has the accession number PVIU01000000, and consists of sequences PVIU01000001-PVIU01565356. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: OndZib_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 43.9x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..565356 /organism="Ondatra zibethicus" /mol_type="genomic DNA" /isolate="US110" /db_xref="taxon:10060" /dev_stage="adult" WGS PVIU01000001-PVIU01565356 // LOCUS PVIY010000000 1621408 rc DNA linear MAM 16-JAN-2019 DEFINITION Myrmecophaga tridactyla isolate BS39, whole genome shotgun sequencing project. ACCESSION PVIY000000000 VERSION PVIY000000000.1 DBLINK BioProject: PRJNA399407 BioSample: SAMN07678098 KEYWORDS WGS. SOURCE Myrmecophaga tridactyla (giant anteater) ORGANISM Myrmecophaga tridactyla Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Xenarthra; Pilosa; Vermilingua; Myrmecophagidae; Myrmecophaga. REFERENCE 1 (bases 1 to 1621408) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1621408) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Myrmecophaga tridactyla whole genome shotgun (WGS) project has the project accession PVIY000000000. This version of the project (01) has the accession number PVIY010000000, and consists of sequences PVIY010000001-PVIY011621408. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: MyrTri_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 28.9x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1621408 /organism="Myrmecophaga tridactyla" /mol_type="genomic DNA" /isolate="BS39" /db_xref="taxon:71006" /dev_stage="adult" WGS PVIY010000001-PVIY011621408 // LOCUS PVJA010000000 1669667 rc DNA linear ROD 16-JAN-2019 DEFINITION Myocastor coypus isolate US051, whole genome shotgun sequencing project. ACCESSION PVJA000000000 VERSION PVJA000000000.1 DBLINK BioProject: PRJNA399346 BioSample: SAMN07678020 KEYWORDS WGS. SOURCE Myocastor coypus (nutria) ORGANISM Myocastor coypus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Myocastoridae; Myocastor. REFERENCE 1 (bases 1 to 1669667) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1669667) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Myocastor coypus whole genome shotgun (WGS) project has the project accession PVJA000000000. This version of the project (01) has the accession number PVJA010000000, and consists of sequences PVJA010000001-PVJA011669667. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: MyoCoy_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 56.5x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1669667 /organism="Myocastor coypus" /mol_type="genomic DNA" /isolate="US051" /db_xref="taxon:10157" /dev_stage="adult" WGS PVJA010000001-PVJA011669667 // LOCUS PVJM010000000 1592829 rc DNA linear MAM 16-JAN-2019 DEFINITION Lepus americanus isolate BS55, whole genome shotgun sequencing project. ACCESSION PVJM000000000 VERSION PVJM000000000.1 DBLINK BioProject: PRJNA399359 BioSample: SAMN07678042 KEYWORDS WGS. SOURCE Lepus americanus (snowshoe hare) ORGANISM Lepus americanus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Lepus. REFERENCE 1 (bases 1 to 1592829) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1592829) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Lepus americanus whole genome shotgun (WGS) project has the project accession PVJM000000000. This version of the project (01) has the accession number PVJM010000000, and consists of sequences PVJM010000001-PVJM011592829. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: LepAme_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 32.6x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1592829 /organism="Lepus americanus" /mol_type="genomic DNA" /isolate="BS55" /db_xref="taxon:48086" /dev_stage="adult" WGS PVJM010000001-PVJM011592829 // LOCUS PVJQ01000000 967933 rc DNA linear MAM 16-JAN-2019 DEFINITION Heterohyrax brucei isolate US064, whole genome shotgun sequencing project. ACCESSION PVJQ00000000 VERSION PVJQ00000000.1 DBLINK BioProject: PRJNA399398 BioSample: SAMN07678088 KEYWORDS WGS. SOURCE Heterohyrax brucei (yellow-spotted hyrax) ORGANISM Heterohyrax brucei Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Hyracoidea; Procaviidae; Heterohyrax. REFERENCE 1 (bases 1 to 967933) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 967933) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Heterohyrax brucei whole genome shotgun (WGS) project has the project accession PVJQ00000000. This version of the project (01) has the accession number PVJQ01000000, and consists of sequences PVJQ01000001-PVJQ01967933. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: HetBruBak_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 24.4x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..967933 /organism="Heterohyrax brucei" /mol_type="genomic DNA" /isolate="US064" /db_xref="taxon:77598" /dev_stage="adult" WGS PVJQ01000001-PVJQ01967933 // LOCUS PVIS010000000 1048136 rc DNA linear MAM 16-JAN-2019 DEFINITION Ovis canadensis isolate BS48, whole genome shotgun sequencing project. ACCESSION PVIS000000000 VERSION PVIS000000000.1 DBLINK BioProject: PRJNA399410 BioSample: SAMN07678102 KEYWORDS WGS. SOURCE Ovis canadensis (bighorn sheep) ORGANISM Ovis canadensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Ovis. REFERENCE 1 (bases 1 to 1048136) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1048136) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Ovis canadensis whole genome shotgun (WGS) project has the project accession PVIS000000000. This version of the project (01) has the accession number PVIS010000000, and consists of sequences PVIS010000001-PVIS011048136. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: OviCan_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 25.2x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1048136 /organism="Ovis canadensis" /mol_type="genomic DNA" /isolate="BS48" /db_xref="taxon:37174" /sex="male" /dev_stage="adult" WGS PVIS010000001-PVIS011048136 // LOCUS PVJC01000000 880177 rc DNA linear MAM 16-JAN-2019 DEFINITION Murina aurata feae isolate US074, whole genome shotgun sequencing project. ACCESSION PVJC00000000 VERSION PVJC00000000.1 DBLINK BioProject: PRJNA399367 BioSample: SAMN07678148 KEYWORDS WGS. SOURCE Murina aurata feae ORGANISM Murina aurata feae Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Vespertilionidae; Murina. REFERENCE 1 (bases 1 to 880177) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 880177) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Murina aurata feae whole genome shotgun (WGS) project has the project accession PVJC00000000. This version of the project (01) has the accession number PVJC01000000, and consists of sequences PVJC01000001-PVJC01880177. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: MurFea_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 33.3x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..880177 /organism="Murina aurata feae" /mol_type="genomic DNA" /isolate="US074" /sub_species="feae" /db_xref="taxon:1453894" /dev_stage="adult" WGS PVJC01000001-PVJC01880177 // LOCUS PVJB01000000 466805 rc DNA linear ROD 16-JAN-2019 DEFINITION Muscardinus avellanarius isolate US077, whole genome shotgun sequencing project. ACCESSION PVJB00000000 VERSION PVJB00000000.1 DBLINK BioProject: PRJNA399340 BioSample: SAMN07678014 KEYWORDS WGS. SOURCE Muscardinus avellanarius (hazel dormouse) ORGANISM Muscardinus avellanarius Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Gliridae; Muscardinus. REFERENCE 1 (bases 1 to 466805) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 466805) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Muscardinus avellanarius whole genome shotgun (WGS) project has the project accession PVJB00000000. This version of the project (01) has the accession number PVJB01000000, and consists of sequences PVJB01000001-PVJB01466805. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: MusAve_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 32.8x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..466805 /organism="Muscardinus avellanarius" /mol_type="genomic DNA" /isolate="US077" /db_xref="taxon:39082" /dev_stage="adult" WGS PVJB01000001-PVJB01466805 // LOCUS PVIR01000000 910679 rc DNA linear ROD 16-JAN-2019 DEFINITION Petromus typicus isolate US052, whole genome shotgun sequencing project. ACCESSION PVIR00000000 VERSION PVIR00000000.1 DBLINK BioProject: PRJNA399347 BioSample: SAMN07678021 KEYWORDS WGS. SOURCE Petromus typicus (dassie-rat) ORGANISM Petromus typicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Petromuridae; Petromus. REFERENCE 1 (bases 1 to 910679) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 910679) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Petromus typicus whole genome shotgun (WGS) project has the project accession PVIR00000000. This version of the project (01) has the accession number PVIR01000000, and consists of sequences PVIR01000001-PVIR01910679. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: PetTyp_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 37.7x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..910679 /organism="Petromus typicus" /mol_type="genomic DNA" /isolate="US052" /db_xref="taxon:10183" /dev_stage="adult" WGS PVIR01000001-PVIR01910679 // LOCUS PVJO010000000 1136598 rc DNA linear ROD 16-JAN-2019 DEFINITION Hystrix cristata isolate US031, whole genome shotgun sequencing project. ACCESSION PVJO000000000 VERSION PVJO000000000.1 DBLINK BioProject: PRJNA399401 BioSample: SAMN07678090 KEYWORDS WGS. SOURCE Hystrix cristata (crested porcupine) ORGANISM Hystrix cristata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Hystricidae; Hystrix. REFERENCE 1 (bases 1 to 1136598) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1136598) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Hystrix cristata whole genome shotgun (WGS) project has the project accession PVJO000000000. This version of the project (01) has the accession number PVJO010000000, and consists of sequences PVJO010000001-PVJO011136598. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: HysCri_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 35.2x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1136598 /organism="Hystrix cristata" /mol_type="genomic DNA" /isolate="US031" /db_xref="taxon:10137" /dev_stage="adult" WGS PVJO010000001-PVJO011136598 // LOCUS PVJF01000000 882704 rc DNA linear MAM 16-JAN-2019 DEFINITION Monodon monoceros isolate BS03, whole genome shotgun sequencing project. ACCESSION PVJF00000000 VERSION PVJF00000000.1 DBLINK BioProject: PRJNA399349 BioSample: SAMN07678023 KEYWORDS WGS. SOURCE Monodon monoceros (narwhal) ORGANISM Monodon monoceros Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Monodontidae; Monodon. REFERENCE 1 (bases 1 to 882704) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 882704) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Monodon monoceros whole genome shotgun (WGS) project has the project accession PVJF00000000. This version of the project (01) has the accession number PVJF01000000, and consists of sequences PVJF01000001-PVJF01882704. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: MonMon_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 34.7x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..882704 /organism="Monodon monoceros" /mol_type="genomic DNA" /isolate="BS03" /db_xref="taxon:40151" /sex="female" /dev_stage="adult" WGS PVJF01000001-PVJF01882704 // LOCUS PVJR01000000 469163 rc DNA linear MAM 16-JAN-2019 DEFINITION Hemitragus hylocrius isolate BS50, whole genome shotgun sequencing project. ACCESSION PVJR00000000 VERSION PVJR00000000.1 DBLINK BioProject: PRJNA399397 BioSample: SAMN07678087 KEYWORDS WGS. SOURCE Hemitragus hylocrius (Nilgiri tahr) ORGANISM Hemitragus hylocrius Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Hemitragus. REFERENCE 1 (bases 1 to 469163) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 469163) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Hemitragus hylocrius whole genome shotgun (WGS) project has the project accession PVJR00000000. This version of the project (01) has the accession number PVJR01000000, and consists of sequences PVJR01000001-PVJR01469163. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: HemHyl_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 29.4x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..469163 /organism="Hemitragus hylocrius" /mol_type="genomic DNA" /isolate="BS50" /db_xref="taxon:330464" /sex="female" /dev_stage="adult" WGS PVJR01000001-PVJR01469163 // LOCUS PVJK01000000 785187 rc DNA linear ROD 16-JAN-2019 DEFINITION Meriones unguiculatus isolate US013, whole genome shotgun sequencing project. ACCESSION PVJK00000000 VERSION PVJK00000000.1 DBLINK BioProject: PRJNA399432 BioSample: SAMN07678137 KEYWORDS WGS. SOURCE Meriones unguiculatus (Mongolian gerbil) ORGANISM Meriones unguiculatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Gerbillinae; Meriones. REFERENCE 1 (bases 1 to 785187) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 785187) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Meriones unguiculatus whole genome shotgun (WGS) project has the project accession PVJK00000000. This version of the project (01) has the accession number PVJK01000000, and consists of sequences PVJK01000001-PVJK01785187. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: MerUng_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 31.3x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..785187 /organism="Meriones unguiculatus" /mol_type="genomic DNA" /isolate="US013" /db_xref="taxon:10047" /dev_stage="adult" WGS PVJK01000001-PVJK01785187 // LOCUS PVJL010000000 1902801 rc DNA linear MAM 16-JAN-2019 DEFINITION Megaderma lyra isolate US036, whole genome shotgun sequencing project. ACCESSION PVJL000000000 VERSION PVJL000000000.1 DBLINK BioProject: PRJNA399353 BioSample: SAMN07678029 KEYWORDS WGS. SOURCE Megaderma lyra (Indian false vampire) ORGANISM Megaderma lyra Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Megadermatidae; Megaderma. REFERENCE 1 (bases 1 to 1902801) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1902801) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Megaderma lyra whole genome shotgun (WGS) project has the project accession PVJL000000000. This version of the project (01) has the accession number PVJL010000000, and consists of sequences PVJL010000001-PVJL011902801. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: MegLyr_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 49.8x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1902801 /organism="Megaderma lyra" /mol_type="genomic DNA" /isolate="US036" /db_xref="taxon:9413" /dev_stage="adult" WGS PVJL010000001-PVJL011902801 // LOCUS PVIZ010000000 1045197 rc DNA linear MAM 16-JAN-2019 DEFINITION Myotis myotis isolate US100, whole genome shotgun sequencing project. ACCESSION PVIZ000000000 VERSION PVIZ000000000.1 DBLINK BioProject: PRJNA399444 BioSample: SAMN07678038 KEYWORDS WGS. SOURCE Myotis myotis ORGANISM Myotis myotis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Vespertilionidae; Myotis. REFERENCE 1 (bases 1 to 1045197) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1045197) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Myotis myotis whole genome shotgun (WGS) project has the project accession PVIZ000000000. This version of the project (01) has the accession number PVIZ010000000, and consists of sequences PVIZ010000001-PVIZ011045197. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: MyoMyo_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 47.8x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1045197 /organism="Myotis myotis" /mol_type="genomic DNA" /isolate="US100" /db_xref="taxon:51298" /dev_stage="adult" WGS PVIZ010000001-PVIZ011045197 // LOCUS PVJJ010000000 1801720 rc DNA linear MAM 16-JAN-2019 DEFINITION Mesoplodon bidens isolate US080, whole genome shotgun sequencing project. ACCESSION PVJJ000000000 VERSION PVJJ000000000.1 DBLINK BioProject: PRJNA399476 BioSample: SAMN07678145 KEYWORDS WGS. SOURCE Mesoplodon bidens (Sowerby's beaked whale) ORGANISM Mesoplodon bidens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Ziphiidae; Mesoplodon. REFERENCE 1 (bases 1 to 1801720) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1801720) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Mesoplodon bidens whole genome shotgun (WGS) project has the project accession PVJJ000000000. This version of the project (01) has the accession number PVJJ010000000, and consists of sequences PVJJ010000001-PVJJ011801720. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: MesBid_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 32.4x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1801720 /organism="Mesoplodon bidens" /mol_type="genomic DNA" /isolate="US080" /db_xref="taxon:48745" /dev_stage="adult" WGS PVJJ010000001-PVJJ011801720 // LOCUS PVIQ01000000 726104 rc DNA linear MAM 16-JAN-2019 DEFINITION Pipistrellus pipistrellus isolate US040, whole genome shotgun sequencing project. ACCESSION PVIQ00000000 VERSION PVIQ00000000.1 DBLINK BioProject: PRJNA399427 BioSample: SAMN07678120 KEYWORDS WGS. SOURCE Pipistrellus pipistrellus (common pipistrelle) ORGANISM Pipistrellus pipistrellus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Vespertilionidae; Pipistrellus. REFERENCE 1 (bases 1 to 726104) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 726104) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Pipistrellus pipistrellus whole genome shotgun (WGS) project has the project accession PVIQ00000000. This version of the project (01) has the accession number PVIQ01000000, and consists of sequences PVIQ01000001-PVIQ01726104. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: PipPip_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 52.8x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..726104 /organism="Pipistrellus pipistrellus" /mol_type="genomic DNA" /isolate="US040" /db_xref="taxon:59474" /sex="male" /dev_stage="adult" WGS PVIQ01000001-PVIQ01726104 // LOCUS PVJE01000000 644873 rc DNA linear MAM 16-JAN-2019 DEFINITION Monodon monoceros isolate BS41, whole genome shotgun sequencing project. ACCESSION PVJE00000000 VERSION PVJE00000000.1 DBLINK BioProject: PRJNA399349 BioSample: SAMN07678024 KEYWORDS WGS. SOURCE Monodon monoceros (narwhal) ORGANISM Monodon monoceros Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Monodontidae; Monodon. REFERENCE 1 (bases 1 to 644873) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 644873) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Monodon monoceros whole genome shotgun (WGS) project has the project accession PVJE00000000. This version of the project (01) has the accession number PVJE01000000, and consists of sequences PVJE01000001-PVJE01644873. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: MonMon_M_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 23.2x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..644873 /organism="Monodon monoceros" /mol_type="genomic DNA" /isolate="BS41" /db_xref="taxon:40151" /sex="male" /dev_stage="adult" WGS PVJE01000001-PVJE01644873 // LOCUS PVJN01000000 518900 rc DNA linear MAM 16-JAN-2019 DEFINITION Lasiurus borealis isolate US024, whole genome shotgun sequencing project. ACCESSION PVJN00000000 VERSION PVJN00000000.1 DBLINK BioProject: PRJNA399352 BioSample: SAMN07678027 KEYWORDS WGS. SOURCE Lasiurus borealis (red bat) ORGANISM Lasiurus borealis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Vespertilionidae; Lasiurus. REFERENCE 1 (bases 1 to 518900) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 518900) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Lasiurus borealis whole genome shotgun (WGS) project has the project accession PVJN00000000. This version of the project (01) has the accession number PVJN01000000, and consists of sequences PVJN01000001-PVJN01518900. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: LasBor_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 42.1x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..518900 /organism="Lasiurus borealis" /mol_type="genomic DNA" /isolate="US024" /db_xref="taxon:258930" /dev_stage="adult" WGS PVJN01000001-PVJN01518900 // LOCUS PVIP01000000 892330 rc DNA linear PRI 16-JAN-2019 DEFINITION Pithecia pithecia isolate BS33, whole genome shotgun sequencing project. ACCESSION PVIP00000000 VERSION PVIP00000000.1 DBLINK BioProject: PRJNA399413 BioSample: SAMN07678106 KEYWORDS WGS. SOURCE Pithecia pithecia (white-faced saki) ORGANISM Pithecia pithecia Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Pitheciidae; Pitheciinae; Pithecia. REFERENCE 1 (bases 1 to 892330) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 892330) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Pithecia pithecia whole genome shotgun (WGS) project has the project accession PVIP00000000. This version of the project (01) has the accession number PVIP01000000, and consists of sequences PVIP01000001-PVIP01892330. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: PitPit_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 47.3x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..892330 /organism="Pithecia pithecia" /mol_type="genomic DNA" /isolate="BS33" /db_xref="taxon:43777" /dev_stage="adult" WGS PVIP01000001-PVIP01892330 // LOCUS PVJH01000000 788895 rc DNA linear MAM 16-JAN-2019 DEFINITION Microgale talazaci isolate US118, whole genome shotgun sequencing project. ACCESSION PVJH00000000 VERSION PVJH00000000.1 DBLINK BioProject: PRJNA399450 BioSample: SAMN07678058 KEYWORDS WGS. SOURCE Microgale talazaci (Talazac's shrew tenrec) ORGANISM Microgale talazaci Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Tenrecidae; Oryzorictinae; Microgale. REFERENCE 1 (bases 1 to 788895) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 788895) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Microgale talazaci whole genome shotgun (WGS) project has the project accession PVJH00000000. This version of the project (01) has the accession number PVJH01000000, and consists of sequences PVJH01000001-PVJH01788895. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: MicTal_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 27.8x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..788895 /organism="Microgale talazaci" /mol_type="genomic DNA" /isolate="US118" /db_xref="taxon:176115" /dev_stage="adult" WGS PVJH01000001-PVJH01788895 // LOCUS PVJI01000000 550090 rc DNA linear MAM 16-JAN-2019 DEFINITION Micronycteris hirsuta isolate US037, whole genome shotgun sequencing project. ACCESSION PVJI00000000 VERSION PVJI00000000.1 DBLINK BioProject: PRJNA399354 BioSample: SAMN07678146 KEYWORDS WGS. SOURCE Micronycteris hirsuta ORGANISM Micronycteris hirsuta Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Phyllostomidae; Phyllostominae; Micronycteris. REFERENCE 1 (bases 1 to 550090) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 550090) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Micronycteris hirsuta whole genome shotgun (WGS) project has the project accession PVJI00000000. This version of the project (01) has the accession number PVJI01000000, and consists of sequences PVJI01000001-PVJI01550090. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: MicHir_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 39.4x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..550090 /organism="Micronycteris hirsuta" /mol_type="genomic DNA" /isolate="US037" /db_xref="taxon:148065" /dev_stage="adult" WGS PVJI01000001-PVJI01550090 // LOCUS PVIW01000000 298222 rc DNA linear MAM 16-JAN-2019 DEFINITION Noctilio leporinus isolate US093, whole genome shotgun sequencing project. ACCESSION PVIW00000000 VERSION PVIW00000000.1 DBLINK BioProject: PRJNA399473 BioSample: SAMN07678134 KEYWORDS WGS. SOURCE Noctilio leporinus (greater bulldog bat) ORGANISM Noctilio leporinus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Noctilionidae; Noctilio. REFERENCE 1 (bases 1 to 298222) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 298222) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Noctilio leporinus whole genome shotgun (WGS) project has the project accession PVIW00000000. This version of the project (01) has the accession number PVIW01000000, and consists of sequences PVIW01000001-PVIW01298222. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: NocLep_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 42.9x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..298222 /organism="Noctilio leporinus" /mol_type="genomic DNA" /isolate="US093" /db_xref="taxon:94963" /dev_stage="adult" WGS PVIW01000001-PVIW01298222 // LOCUS PVJD01000000 205259 rc DNA linear MAM 16-JAN-2019 DEFINITION Mormoops blainvillei isolate US096, whole genome shotgun sequencing project. ACCESSION PVJD00000000 VERSION PVJD00000000.1 DBLINK BioProject: PRJNA399472 BioSample: SAMN07678133 KEYWORDS WGS. SOURCE Mormoops blainvillei (Antillean ghost-faced bat) ORGANISM Mormoops blainvillei Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Mormoopidae; Mormoops. REFERENCE 1 (bases 1 to 205259) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 205259) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (12-DEC-2017) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Mormoops blainvillei whole genome shotgun (WGS) project has the project accession PVJD00000000. This version of the project (01) has the accession number PVJD01000000, and consists of sequences PVJD01000001-PVJD01205259. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: MorMeg_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 32.8x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..205259 /organism="Mormoops blainvillei" /mol_type="genomic DNA" /isolate="US096" /db_xref="taxon:118852" /dev_stage="adult" WGS PVJD01000001-PVJD01205259 // LOCUS PVJG01000000 177620 rc DNA linear MAM 16-JAN-2019 DEFINITION Miniopterus schreibersii isolate US075, whole genome shotgun sequencing project. ACCESSION PVJG00000000 VERSION PVJG00000000.1 DBLINK BioProject: PRJNA399366 BioSample: SAMN07678147 KEYWORDS WGS. SOURCE Miniopterus schreibersii (Schreibers' long-fingered bat) ORGANISM Miniopterus schreibersii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Vespertilionidae; Miniopterinae; Miniopterus. REFERENCE 1 (bases 1 to 177620) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 177620) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Miniopterus schreibersii whole genome shotgun (WGS) project has the project accession PVJG00000000. This version of the project (01) has the accession number PVJG01000000, and consists of sequences PVJG01000001-PVJG01177620. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: MinSch_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 24.8x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..177620 /organism="Miniopterus schreibersii" /mol_type="genomic DNA" /isolate="US075" /db_xref="taxon:9433" /dev_stage="adult" WGS PVJG01000001-PVJG01177620 // LOCUS PVIN010000000 1360739 rc DNA linear MAM 16-JAN-2019 DEFINITION Rangifer tarandus isolate US061, whole genome shotgun sequencing project. ACCESSION PVIN000000000 VERSION PVIN000000000.1 DBLINK BioProject: PRJNA399416 BioSample: SAMN07678109 KEYWORDS WGS. SOURCE Rangifer tarandus (reindeer) ORGANISM Rangifer tarandus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Cervidae; Odocoileinae; Rangifer. REFERENCE 1 (bases 1 to 1360739) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1360739) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Rangifer tarandus whole genome shotgun (WGS) project has the project accession PVIN000000000. This version of the project (01) has the accession number PVIN010000000, and consists of sequences PVIN010000001-PVIN011360739. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: RanTarSib_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 45.9x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1360739 /organism="Rangifer tarandus" /mol_type="genomic DNA" /isolate="US061" /db_xref="taxon:9870" /dev_stage="adult" WGS PVIN010000001-PVIN011360739 // LOCUS PVIM010000000 4150536 rc DNA linear ROD 16-JAN-2019 DEFINITION Rhizomys pruinosus isolate US103, whole genome shotgun sequencing project. ACCESSION PVIM000000000 VERSION PVIM000000000.1 DBLINK BioProject: PRJNA399452 BioSample: SAMN07678150 KEYWORDS WGS. SOURCE Rhizomys pruinosus (hoary bamboo rat) ORGANISM Rhizomys pruinosus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Rhizomyinae; Rhizomys. REFERENCE 1 (bases 1 to 4150536) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 4150536) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Rhizomys pruinosus whole genome shotgun (WGS) project has the project accession PVIM000000000. This version of the project (01) has the accession number PVIM010000000, and consists of sequences PVIM010000001-PVIM014150536. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: RhiPru_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 25.5x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..4150536 /organism="Rhizomys pruinosus" /mol_type="genomic DNA" /isolate="US103" /db_xref="taxon:53275" /dev_stage="adult" WGS PVIM010000001-PVIM014150536 // LOCUS PVIB010000000 2925507 rc DNA linear MAM 15-JAN-2019 DEFINITION Tolypeutes matacus isolate US073, whole genome shotgun sequencing project. ACCESSION PVIB000000000 VERSION PVIB000000000.1 DBLINK BioProject: PRJNA399423 BioSample: SAMN07678115 KEYWORDS WGS. SOURCE Tolypeutes matacus ORGANISM Tolypeutes matacus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Xenarthra; Cingulata; Chlamyphoridae; Tolypeutes. REFERENCE 1 (bases 1 to 2925507) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 2925507) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Tolypeutes matacus whole genome shotgun (WGS) project has the project accession PVIB000000000. This version of the project (01) has the accession number PVIB010000000, and consists of sequences PVIB010000001-PVIB012925507. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: TolMat_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 22.1x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..2925507 /organism="Tolypeutes matacus" /mol_type="genomic DNA" /isolate="US073" /db_xref="taxon:183749" /dev_stage="adult" WGS PVIB010000001-PVIB012925507 // LOCUS PVIF010000000 2144204 rc DNA linear MAM 15-JAN-2019 DEFINITION Tamandua tetradactyla isolate US055, whole genome shotgun sequencing project. ACCESSION PVIF000000000 VERSION PVIF000000000.1 DBLINK BioProject: PRJNA399420 BioSample: SAMN07678112 KEYWORDS WGS. SOURCE Tamandua tetradactyla (southern tamandua) ORGANISM Tamandua tetradactyla Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Xenarthra; Pilosa; Vermilingua; Myrmecophagidae; Tamandua. REFERENCE 1 (bases 1 to 2144204) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 2144204) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Tamandua tetradactyla whole genome shotgun (WGS) project has the project accession PVIF000000000. This version of the project (01) has the accession number PVIF010000000, and consists of sequences PVIF010000001-PVIF012144204. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: TamTet_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 30x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..2144204 /organism="Tamandua tetradactyla" /mol_type="genomic DNA" /isolate="US055" /db_xref="taxon:48850" /dev_stage="adult" WGS PVIF010000001-PVIF012144204 // LOCUS PVIC010000000 1889641 rc DNA linear ROD 15-JAN-2019 DEFINITION Thryonomys swinderianus isolate US090, whole genome shotgun sequencing project. ACCESSION PVIC000000000 VERSION PVIC000000000.1 DBLINK BioProject: PRJNA399470 BioSample: SAMN07678129 KEYWORDS WGS. SOURCE Thryonomys swinderianus (Greater cane rat) ORGANISM Thryonomys swinderianus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Thryonomyidae; Thryonomys. REFERENCE 1 (bases 1 to 1889641) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1889641) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Thryonomys swinderianus whole genome shotgun (WGS) project has the project accession PVIC000000000. This version of the project (01) has the accession number PVIC010000000, and consists of sequences PVIC010000001-PVIC011889641. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: ThrSwi_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 58.2x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1889641 /organism="Thryonomys swinderianus" /mol_type="genomic DNA" /isolate="US090" /db_xref="taxon:10169" /dev_stage="adult" WGS PVIC010000001-PVIC011889641 // LOCUS PVIK010000000 1772199 rc DNA linear MAM 15-JAN-2019 DEFINITION Saiga tatarica isolate BS49, whole genome shotgun sequencing project. ACCESSION PVIK000000000 VERSION PVIK000000000.1 DBLINK BioProject: PRJNA399418 BioSample: SAMN07678151 KEYWORDS WGS. SOURCE Saiga tatarica ORGANISM Saiga tatarica Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Antilopinae; Saiga. REFERENCE 1 (bases 1 to 1772199) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1772199) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Saiga tatarica whole genome shotgun (WGS) project has the project accession PVIK000000000. This version of the project (01) has the accession number PVIK010000000, and consists of sequences PVIK010000001-PVIK011772199. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: SaiTat_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 18.8x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1772199 /organism="Saiga tatarica" /mol_type="genomic DNA" /isolate="BS49" /db_xref="taxon:34875" /sex="male" /dev_stage="adult" WGS PVIK010000001-PVIK011772199 // LOCUS PVII010000000 1063749 rc DNA linear PRI 15-JAN-2019 DEFINITION Semnopithecus entellus isolate BS30, whole genome shotgun sequencing project. ACCESSION PVII000000000 VERSION PVII000000000.1 DBLINK BioProject: PRJNA399419 BioSample: SAMN07678111 KEYWORDS WGS. SOURCE Semnopithecus entellus (Hanuman langur) ORGANISM Semnopithecus entellus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Semnopithecus. REFERENCE 1 (bases 1 to 1063749) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1063749) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Semnopithecus entellus whole genome shotgun (WGS) project has the project accession PVII000000000. This version of the project (01) has the accession number PVII010000000, and consists of sequences PVII010000001-PVII011063749. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: SemEnt_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 29.3x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1063749 /organism="Semnopithecus entellus" /mol_type="genomic DNA" /isolate="BS30" /db_xref="taxon:88029" /dev_stage="adult" WGS PVII010000001-PVII011063749 // LOCUS PVIH01000000 883546 rc DNA linear ROD 15-JAN-2019 DEFINITION Sigmodon hispidus isolate US029, whole genome shotgun sequencing project. ACCESSION PVIH00000000 VERSION PVIH00000000.1 DBLINK BioProject: PRJNA399433 BioSample: SAMN07678138 KEYWORDS WGS. SOURCE Sigmodon hispidus (hispid cotton rat) ORGANISM Sigmodon hispidus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Sigmodontinae; Sigmodon. REFERENCE 1 (bases 1 to 883546) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 883546) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Sigmodon hispidus whole genome shotgun (WGS) project has the project accession PVIH00000000. This version of the project (01) has the accession number PVIH01000000, and consists of sequences PVIH01000001-PVIH01883546. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: SigHis_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 43.2x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..883546 /organism="Sigmodon hispidus" /mol_type="genomic DNA" /isolate="US029" /db_xref="taxon:42415" /dev_stage="adult" WGS PVIH01000001-PVIH01883546 // LOCUS PVIG010000000 1067615 rc DNA linear MAM 15-JAN-2019 DEFINITION Tadarida brasiliensis isolate US034, whole genome shotgun sequencing project. ACCESSION PVIG000000000 VERSION PVIG000000000.1 DBLINK BioProject: PRJNA399430 BioSample: SAMN07678131 KEYWORDS WGS. SOURCE Tadarida brasiliensis (Brazilian free-tailed bat) ORGANISM Tadarida brasiliensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Molossidae; Tadarida. REFERENCE 1 (bases 1 to 1067615) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1067615) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Tadarida brasiliensis whole genome shotgun (WGS) project has the project accession PVIG000000000. This version of the project (01) has the accession number PVIG010000000, and consists of sequences PVIG010000001-PVIG011067615. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: TadBra_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 30.3x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1067615 /organism="Tadarida brasiliensis" /mol_type="genomic DNA" /isolate="US034" /db_xref="taxon:9438" /dev_stage="adult" WGS PVIG010000001-PVIG011067615 // LOCUS PVID01000000 803506 rc DNA linear MAM 15-JAN-2019 DEFINITION Tapirus terrestris isolate BS40, whole genome shotgun sequencing project. ACCESSION PVID00000000 VERSION PVID00000000.1 DBLINK BioProject: PRJNA399422 BioSample: SAMN07678114 KEYWORDS WGS. SOURCE Tapirus terrestris (Brazilian tapir) ORGANISM Tapirus terrestris Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Tapiridae; Tapirus. REFERENCE 1 (bases 1 to 803506) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 803506) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Tapirus terrestris whole genome shotgun (WGS) project has the project accession PVID00000000. This version of the project (01) has the accession number PVID01000000, and consists of sequences PVID01000001-PVID01803506. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: TapTer_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 44.2x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..803506 /organism="Tapirus terrestris" /mol_type="genomic DNA" /isolate="BS40" /db_xref="taxon:9801" /dev_stage="adult" WGS PVID01000001-PVID01803506 // LOCUS PVHY01000000 723835 rc DNA linear MAM 15-JAN-2019 DEFINITION Uropsilus gracilis isolate US010, whole genome shotgun sequencing project. ACCESSION PVHY00000000 VERSION PVHY00000000.1 DBLINK BioProject: PRJNA399362 BioSample: SAMN07678046 KEYWORDS WGS. SOURCE Uropsilus gracilis (gracile shrew mole) ORGANISM Uropsilus gracilis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Talpidae; Uropsilus. REFERENCE 1 (bases 1 to 723835) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 723835) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Uropsilus gracilis whole genome shotgun (WGS) project has the project accession PVHY00000000. This version of the project (01) has the accession number PVHY01000000, and consists of sequences PVHY01000001-PVHY01723835. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: UroGra_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 54.2x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..723835 /organism="Uropsilus gracilis" /mol_type="genomic DNA" /isolate="US010" /db_xref="taxon:182669" /dev_stage="adult" WGS PVHY01000001-PVHY01723835 // LOCUS PVIJ01000000 640296 rc DNA linear MAM 15-JAN-2019 DEFINITION Scalopus aquaticus isolate US009, whole genome shotgun sequencing project. ACCESSION PVIJ00000000 VERSION PVIJ00000000.1 DBLINK BioProject: PRJNA399361 BioSample: SAMN07678045 KEYWORDS WGS. SOURCE Scalopus aquaticus (eastern mole) ORGANISM Scalopus aquaticus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Talpidae; Scalopus. REFERENCE 1 (bases 1 to 640296) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 640296) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Scalopus aquaticus whole genome shotgun (WGS) project has the project accession PVIJ00000000. This version of the project (01) has the accession number PVIJ01000000, and consists of sequences PVIJ01000001-PVIJ01640296. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: ScaAqu_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 46.1x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..640296 /organism="Scalopus aquaticus" /mol_type="genomic DNA" /isolate="US009" /db_xref="taxon:71119" /dev_stage="adult" WGS PVIJ01000001-PVIJ01640296 // LOCUS PVIE01000000 280135 rc DNA linear MAM 15-JAN-2019 DEFINITION Tapirus indicus isolate BS100, whole genome shotgun sequencing project. ACCESSION PVIE00000000 VERSION PVIE00000000.1 DBLINK BioProject: PRJNA399421 BioSample: SAMN07678113 KEYWORDS WGS. SOURCE Tapirus indicus (Asiatic tapir) ORGANISM Tapirus indicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Tapiridae; Tapirus. REFERENCE 1 (bases 1 to 280135) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 280135) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (16-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Tapirus indicus whole genome shotgun (WGS) project has the project accession PVIE00000000. This version of the project (01) has the accession number PVIE01000000, and consists of sequences PVIE01000001-PVIE01280135. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: TapInd_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 41.4x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..280135 /organism="Tapirus indicus" /mol_type="genomic DNA" /isolate="BS100" /db_xref="taxon:9802" /dev_stage="adult" WGS PVIE01000001-PVIE01280135 // LOCUS PVIA01000000 249810 rc DNA linear MAM 15-JAN-2019 DEFINITION Tonatia saurophila isolate US038, whole genome shotgun sequencing project. ACCESSION PVIA00000000 VERSION PVIA00000000.1 DBLINK BioProject: PRJNA399356 BioSample: SAMN07678031 KEYWORDS WGS. SOURCE Tonatia saurophila (stripe-headed round-eared bat) ORGANISM Tonatia saurophila Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Phyllostomidae; Phyllostominae; Tonatia. REFERENCE 1 (bases 1 to 249810) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 249810) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Tonatia saurophila whole genome shotgun (WGS) project has the project accession PVIA00000000. This version of the project (01) has the accession number PVIA01000000, and consists of sequences PVIA01000001-PVIA01249810. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: TonSau_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 46.1x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..249810 /organism="Tonatia saurophila" /mol_type="genomic DNA" /isolate="US038" /db_xref="taxon:171122" /dev_stage="adult" WGS PVIA01000001-PVIA01249810 // LOCUS PVIL01000000 221754 rc DNA linear MAM 15-JAN-2019 DEFINITION Rousettus aegyptiacus isolate US006, whole genome shotgun sequencing project. ACCESSION PVIL00000000 VERSION PVIL00000000.1 DBLINK BioProject: PRJNA399428 BioSample: SAMN07678121 KEYWORDS WGS. SOURCE Rousettus aegyptiacus (Egyptian rousette) ORGANISM Rousettus aegyptiacus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Megachiroptera; Pteropodidae; Pteropodinae; Rousettus. REFERENCE 1 (bases 1 to 221754) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 221754) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Rousettus aegyptiacus whole genome shotgun (WGS) project has the project accession PVIL00000000. This version of the project (01) has the accession number PVIL01000000, and consists of sequences PVIL01000001-PVIL01221754. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: RouAeg_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 35.7x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..221754 /organism="Rousettus aegyptiacus" /mol_type="genomic DNA" /isolate="US006" /db_xref="taxon:9407" /sex="female" /dev_stage="adult" WGS PVIL01000001-PVIL01221754 // LOCUS PVHO010000000 1666189 rc DNA linear PRI 15-JAN-2019 DEFINITION Saguinus imperator isolate BS22, whole genome shotgun sequencing project. ACCESSION PVHO000000000 VERSION PVHO000000000.1 DBLINK BioProject: PRJNA399417 BioSample: SAMN07678110 KEYWORDS WGS. SOURCE Saguinus imperator (tamarin) ORGANISM Saguinus imperator Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Saguinus. REFERENCE 1 (bases 1 to 1666189) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1666189) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Saguinus imperator whole genome shotgun (WGS) project has the project accession PVHO000000000. This version of the project (01) has the accession number PVHO010000000, and consists of sequences PVHO010000001-PVHO011666189. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: SagImp_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 61.4x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1666189 /organism="Saguinus imperator" /mol_type="genomic DNA" /isolate="BS22" /db_xref="taxon:9491" /sex="male" /dev_stage="adult" WGS PVHO010000001-PVHO011666189 // LOCUS PVHN010000000 1269643 rc DNA linear ROD 15-JAN-2019 DEFINITION Dipodomys stephensi isolate BS19, whole genome shotgun sequencing project. ACCESSION PVHN000000000 VERSION PVHN000000000.1 DBLINK BioProject: PRJNA399390 BioSample: SAMN07678080 KEYWORDS WGS. SOURCE Dipodomys stephensi (Stephens's kangaroo rat) ORGANISM Dipodomys stephensi Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Heteromyidae; Dipodomyinae; Dipodomys. REFERENCE 1 (bases 1 to 1269643) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1269643) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Dipodomys stephensi whole genome shotgun (WGS) project has the project accession PVHN000000000. This version of the project (01) has the accession number PVHN010000000, and consists of sequences PVHN010000001-PVHN011269643. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: DipSte_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 59.2x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1269643 /organism="Dipodomys stephensi" /mol_type="genomic DNA" /isolate="BS19" /db_xref="taxon:323379" /dev_stage="adult" WGS PVHN010000001-PVHN011269643 // LOCUS PVHP010000000 1158100 rc DNA linear ROD 15-JAN-2019 DEFINITION Zapus hudsonius isolate BS14, whole genome shotgun sequencing project. ACCESSION PVHP000000000 VERSION PVHP000000000.1 DBLINK BioProject: PRJNA399434 BioSample: SAMN07678139 KEYWORDS WGS. SOURCE Zapus hudsonius (meadow jumping mouse) ORGANISM Zapus hudsonius Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Dipodoidea; Dipodidae; Zapodinae; Zapus. REFERENCE 1 (bases 1 to 1158100) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1158100) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Zapus hudsonius whole genome shotgun (WGS) project has the project accession PVHP000000000. This version of the project (01) has the accession number PVHP010000000, and consists of sequences PVHP010000001-PVHP011158100. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: ZapHud_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 50.1x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1158100 /organism="Zapus hudsonius" /mol_type="genomic DNA" /isolate="BS14" /db_xref="taxon:160400" /dev_stage="adult" WGS PVHP010000001-PVHP011158100 // LOCUS PVHS01000000 869075 rc DNA linear PRI 15-JAN-2019 DEFINITION Ateles geoffroyi isolate BS17, whole genome shotgun sequencing project. ACCESSION PVHS00000000 VERSION PVHS00000000.1 DBLINK BioProject: PRJNA399374 BioSample: SAMN07678064 KEYWORDS WGS. SOURCE Ateles geoffroyi (black-handed spider monkey) ORGANISM Ateles geoffroyi Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Atelidae; Atelinae; Ateles. REFERENCE 1 (bases 1 to 869075) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 869075) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Ateles geoffroyi whole genome shotgun (WGS) project has the project accession PVHS00000000. This version of the project (01) has the accession number PVHS01000000, and consists of sequences PVHS01000001-PVHS01869075. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: AteGeo_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 60x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..869075 /organism="Ateles geoffroyi" /mol_type="genomic DNA" /isolate="BS17" /db_xref="taxon:9509" /dev_stage="adult" WGS PVHS01000001-PVHS01869075 // LOCUS PVHW010000000 1431093 rc DNA linear PRI 15-JAN-2019 DEFINITION Pygathrix nemaeus isolate BS24, whole genome shotgun sequencing project. ACCESSION PVHW000000000 VERSION PVHW000000000.1 DBLINK BioProject: PRJNA399415 BioSample: SAMN07678108 KEYWORDS WGS. SOURCE Pygathrix nemaeus (Red shanked douc langur) ORGANISM Pygathrix nemaeus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Pygathrix. REFERENCE 1 (bases 1 to 1431093) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1431093) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Pygathrix nemaeus whole genome shotgun (WGS) project has the project accession PVHW000000000. This version of the project (01) has the accession number PVHW010000000, and consists of sequences PVHW010000001-PVHW011431093. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: PygNem_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 65.5x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1431093 /organism="Pygathrix nemaeus" /mol_type="genomic DNA" /isolate="BS24" /db_xref="taxon:54133" /sex="female" /dev_stage="adult" WGS PVHW010000001-PVHW011431093 // LOCUS PVHX01000000 577370 rc DNA linear ROD 15-JAN-2019 DEFINITION Xerus inauris isolate US057, whole genome shotgun sequencing project. ACCESSION PVHX00000000 VERSION PVHX00000000.1 DBLINK BioProject: PRJNA399425 BioSample: SAMN07678119 KEYWORDS WGS. SOURCE Xerus inauris (South African ground squirrel) ORGANISM Xerus inauris Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Xerini; Xerus. REFERENCE 1 (bases 1 to 577370) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 577370) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Xerus inauris whole genome shotgun (WGS) project has the project accession PVHX00000000. This version of the project (01) has the accession number PVHX01000000, and consists of sequences PVHX01000001-PVHX01577370. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: XerIna_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 24.4x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..577370 /organism="Xerus inauris" /mol_type="genomic DNA" /isolate="US057" /db_xref="taxon:234690" /dev_stage="adult" WGS PVHX01000001-PVHX01577370 // LOCUS PVHQ01000000 440879 rc DNA linear PRI 15-JAN-2019 DEFINITION Mirza coquereli isolate BS13, whole genome shotgun sequencing project. ACCESSION PVHQ00000000 VERSION PVHQ00000000.1 DBLINK BioProject: PRJNA399404 BioSample: SAMN07678095 KEYWORDS WGS. SOURCE Mirza coquereli (Coquerel's mouse lemur) ORGANISM Mirza coquereli Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Cheirogaleidae; Mirza. REFERENCE 1 (bases 1 to 440879) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 440879) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Mirza coquereli whole genome shotgun (WGS) project has the project accession PVHQ00000000. This version of the project (01) has the accession number PVHQ01000000, and consists of sequences PVHQ01000001-PVHQ01440879. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: MizCoq_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 60.7x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..440879 /organism="Mirza coquereli" /mol_type="genomic DNA" /isolate="BS13" /db_xref="taxon:47180" /sex="female" /dev_stage="adult" WGS PVHQ01000001-PVHQ01440879 // LOCUS PVHR01000000 547751 rc DNA linear PRI 15-JAN-2019 DEFINITION Cheirogaleus medius isolate BS12, whole genome shotgun sequencing project. ACCESSION PVHR00000000 VERSION PVHR00000000.1 DBLINK BioProject: PRJNA399382 BioSample: SAMN07678072 KEYWORDS WGS. SOURCE Cheirogaleus medius (Lesser dwarf lemur) ORGANISM Cheirogaleus medius Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Cheirogaleidae; Cheirogaleus. REFERENCE 1 (bases 1 to 547751) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 547751) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Cheirogaleus medius whole genome shotgun (WGS) project has the project accession PVHR00000000. This version of the project (01) has the accession number PVHR01000000, and consists of sequences PVHR01000001-PVHR01547751. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: CheMed_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 64.9x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..547751 /organism="Cheirogaleus medius" /mol_type="genomic DNA" /isolate="BS12" /db_xref="taxon:9460" /sex="female" /dev_stage="adult" WGS PVHR01000001-PVHR01547751 // LOCUS PVHV01000000 575427 rc DNA linear PRI 15-JAN-2019 DEFINITION Lemur catta isolate BS26, whole genome shotgun sequencing project. ACCESSION PVHV00000000 VERSION PVHV00000000.1 DBLINK BioProject: PRJNA399402 BioSample: SAMN07678092 KEYWORDS WGS. SOURCE Lemur catta (Ring-tailed lemur) ORGANISM Lemur catta Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Lemuridae; Lemur. REFERENCE 1 (bases 1 to 575427) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 575427) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (13-FEB-2018) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Lemur catta whole genome shotgun (WGS) project has the project accession PVHV00000000. This version of the project (01) has the accession number PVHV01000000, and consists of sequences PVHV01000001-PVHV01575427. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. discovardenovo-52488 Assembly Name :: LemCat_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 56x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..575427 /organism="Lemur catta" /mol_type="genomic DNA" /isolate="BS26" /db_xref="taxon:9447" /sex="male" /dev_stage="adult" WGS PVHV01000001-PVHV01575427 // LOCUS PISX010000000 2068312 rc DNA linear MAM 15-JAN-2019 DEFINITION Mellivora capensis isolate BS25, whole genome shotgun sequencing project. ACCESSION PISX000000000 VERSION PISX000000000.1 DBLINK BioProject: PRJNA399403 BioSample: SAMN07678094 KEYWORDS WGS. SOURCE Mellivora capensis (ratel) ORGANISM Mellivora capensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Mustelidae; Mellivoriane; Mellivora. REFERENCE 1 (bases 1 to 2068312) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 2068312) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (17-NOV-2017) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Mellivora capensis whole genome shotgun (WGS) project has the project accession PISX000000000. This version of the project (01) has the accession number PISX010000000, and consists of sequences PISX010000001-PISX012068312. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. 52488 Assembly Name :: MelCap_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 60x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..2068312 /organism="Mellivora capensis" /mol_type="genomic DNA" /isolate="BS25" /db_xref="taxon:9664" /sex="female" /dev_stage="adult" WGS PISX010000001-PISX012068312 // LOCUS PITB01000000 438125 rc DNA linear MAM 15-JAN-2019 DEFINITION Paradoxurus hermaphroditus isolate BSD07, whole genome shotgun sequencing project. ACCESSION PITB00000000 VERSION PITB00000000.1 DBLINK BioProject: PRJNA399364 BioSample: SAMN07678048 KEYWORDS WGS. SOURCE Paradoxurus hermaphroditus (Asian palm civet) ORGANISM Paradoxurus hermaphroditus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Viverridae; Paradoxurinae; Paradoxurus. REFERENCE 1 (bases 1 to 438125) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 438125) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (17-NOV-2017) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Paradoxurus hermaphroditus whole genome shotgun (WGS) project has the project accession PITB00000000. This version of the project (01) has the accession number PITB01000000, and consists of sequences PITB01000001-PITB01438125. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. 52488 Assembly Name :: ParHer_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 36.9x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..438125 /organism="Paradoxurus hermaphroditus" /mol_type="genomic DNA" /isolate="BSD07" /db_xref="taxon:71117" /dev_stage="adult" WGS PITB01000001-PITB01438125 // LOCUS PISZ01000000 571996 rc DNA linear MAM 15-JAN-2019 DEFINITION Zalophus californianus isolate BS06, whole genome shotgun sequencing project. ACCESSION PISZ00000000 VERSION PISZ00000000.1 DBLINK BioProject: PRJNA399369 BioSample: SAMN07678053 KEYWORDS WGS. SOURCE Zalophus californianus (California sea lion) ORGANISM Zalophus californianus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Otariidae; Zalophus. REFERENCE 1 (bases 1 to 571996) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 571996) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (17-NOV-2017) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Zalophus californianus whole genome shotgun (WGS) project has the project accession PISZ00000000. This version of the project (01) has the accession number PISZ01000000, and consists of sequences PISZ01000001-PISZ01571996. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. 52488 Assembly Name :: ZalCal_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 89.2x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..571996 /organism="Zalophus californianus" /mol_type="genomic DNA" /isolate="BS06" /db_xref="taxon:9704" /sex="female" /dev_stage="adult" WGS PISZ01000001-PISZ01571996 // LOCUS PJEN01000000 644728 rc DNA linear MAM 15-JAN-2019 DEFINITION Pteronura brasiliensis isolate BS51, whole genome shotgun sequencing project. ACCESSION PJEN00000000 VERSION PJEN00000000.1 DBLINK BioProject: PRJNA399365 BioSample: SAMN07678049 KEYWORDS WGS. SOURCE Pteronura brasiliensis (giant otter) ORGANISM Pteronura brasiliensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Mustelidae; Lutrinae; Pteronura. REFERENCE 1 (bases 1 to 644728) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 644728) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (07-DEC-2017) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Pteronura brasiliensis whole genome shotgun (WGS) project has the project accession PJEN00000000. This version of the project (01) has the accession number PJEN01000000, and consists of sequences PJEN01000001-PJEN01644728. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. 52488 Assembly Name :: PteBra_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 47.7x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..644728 /organism="Pteronura brasiliensis" /mol_type="genomic DNA" /isolate="BS51" /db_xref="taxon:9672" /dev_stage="adult" WGS PJEN01000001-PJEN01644728 // LOCUS PISY01000000 590124 rc DNA linear MAM 15-JAN-2019 DEFINITION Felis nigripes isolate BS47, whole genome shotgun sequencing project. ACCESSION PISY00000000 VERSION PISY00000000.1 DBLINK BioProject: PRJNA399394 BioSample: SAMN07678084 KEYWORDS WGS. SOURCE Felis nigripes (black-footed cat) ORGANISM Felis nigripes Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Felis. REFERENCE 1 (bases 1 to 590124) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 590124) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (17-NOV-2017) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Felis nigripes whole genome shotgun (WGS) project has the project accession PISY00000000. This version of the project (01) has the accession number PISY01000000, and consists of sequences PISY01000001-PISY01590124. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. 52488 Assembly Name :: FelNig_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 17.1x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..590124 /organism="Felis nigripes" /mol_type="genomic DNA" /isolate="BS47" /db_xref="taxon:61379" /sex="male" /dev_stage="adult" WGS PISY01000001-PISY01590124 // LOCUS PITA01000000 422009 rc DNA linear MAM 15-JAN-2019 DEFINITION Spilogale gracilis isolate US072, whole genome shotgun sequencing project. ACCESSION PITA00000000 VERSION PITA00000000.1 DBLINK BioProject: PRJNA399437 BioSample: SAMN07678050 KEYWORDS WGS. SOURCE Spilogale gracilis (western spotted skunk) ORGANISM Spilogale gracilis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Mephitidae; Spilogale. REFERENCE 1 (bases 1 to 422009) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 422009) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (17-NOV-2017) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Spilogale gracilis whole genome shotgun (WGS) project has the project accession PITA00000000. This version of the project (01) has the accession number PITA01000000, and consists of sequences PITA01000001-PITA01422009. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. 52488 Assembly Name :: SpiGra_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 33.2x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..422009 /organism="Spilogale gracilis" /mol_type="genomic DNA" /isolate="US072" /db_xref="taxon:30551" /dev_stage="adult" WGS PITA01000001-PITA01422009 // LOCUS PITD01000000 349868 rc DNA linear MAM 15-JAN-2019 DEFINITION Suricata suricatta isolate BS45, whole genome shotgun sequencing project. ACCESSION PITD00000000 VERSION PITD00000000.1 DBLINK BioProject: PRJNA399357 BioSample: SAMN07678040 KEYWORDS WGS. SOURCE Suricata suricatta (meerkat) ORGANISM Suricata suricatta Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Herpestidae; Suricata. REFERENCE 1 (bases 1 to 349868) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 349868) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (17-NOV-2017) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Suricata suricatta whole genome shotgun (WGS) project has the project accession PITD00000000. This version of the project (01) has the accession number PITD01000000, and consists of sequences PITD01000001-PITD01349868. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. 52488 Assembly Name :: SurSur_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 46.9x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..349868 /organism="Suricata suricatta" /mol_type="genomic DNA" /isolate="BS45" /db_xref="taxon:37032" /dev_stage="adult" WGS PITD01000001-PITD01349868 // LOCUS PITC01000000 350223 rc DNA linear MAM 15-JAN-2019 DEFINITION Hyaena hyaena isolate BS54, whole genome shotgun sequencing project. ACCESSION PITC00000000 VERSION PITC00000000.1 DBLINK BioProject: PRJNA399363 BioSample: SAMN07678047 KEYWORDS WGS. SOURCE Hyaena hyaena (striped hyena) ORGANISM Hyaena hyaena Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Hyaenidae; Hyaena. REFERENCE 1 (bases 1 to 350223) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 350223) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (17-NOV-2017) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Hyaena hyaena whole genome shotgun (WGS) project has the project accession PITC00000000. This version of the project (01) has the accession number PITC01000000, and consists of sequences PITC01000001-PITC01350223. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. 52488 Assembly Name :: HyaHya_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 31.3x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..350223 /organism="Hyaena hyaena" /mol_type="genomic DNA" /isolate="BS54" /db_xref="taxon:95912" /dev_stage="adult" WGS PITC01000001-PITC01350223 // LOCUS PITE01000000 321256 rc DNA linear MAM 15-JAN-2019 DEFINITION Mirounga angustirostris isolate BS05, whole genome shotgun sequencing project. ACCESSION PITE00000000 VERSION PITE00000000.1 DBLINK BioProject: PRJNA399341 BioSample: SAMN07678016 KEYWORDS WGS. SOURCE Mirounga angustirostris (Northern elephant seal) ORGANISM Mirounga angustirostris Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Phocidae; Mirounga. REFERENCE 1 (bases 1 to 321256) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 321256) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (17-NOV-2017) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Mirounga angustirostris whole genome shotgun (WGS) project has the project accession PITE00000000. This version of the project (01) has the accession number PITE01000000, and consists of sequences PITE01000001-PITE01321256. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. 52488 Assembly Name :: MirAng_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 35.6x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..321256 /organism="Mirounga angustirostris" /mol_type="genomic DNA" /isolate="BS05" /db_xref="taxon:9716" /dev_stage="adult" WGS PITE01000001-PITE01321256 // LOCUS PJEU01000000 464036 rc DNA linear MAM 15-JAN-2019 DEFINITION Cryptoprocta ferox isolate BS36, whole genome shotgun sequencing project. ACCESSION PJEU00000000 VERSION PJEU00000000.1 DBLINK BioProject: PRJNA399384 BioSample: SAMN07678074 KEYWORDS WGS. SOURCE Cryptoprocta ferox (fossa) ORGANISM Cryptoprocta ferox Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Eupleridae; Euplerinae; Cryptoprocta. REFERENCE 1 (bases 1 to 464036) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 464036) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (08-DEC-2017) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Cryptoprocta ferox whole genome shotgun (WGS) project has the project accession PJEU00000000. This version of the project (01) has the accession number PJEU01000000, and consists of sequences PJEU01000001-PJEU01464036. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. 52488 Assembly Name :: CryFer_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 46.3x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..464036 /organism="Cryptoprocta ferox" /mol_type="genomic DNA" /isolate="BS36" /db_xref="taxon:94188" /dev_stage="adult" WGS PJEU01000001-PJEU01464036 // LOCUS PJEM01000000 189370 rc DNA linear MAM 15-JAN-2019 DEFINITION Helogale parvula isolate US077, whole genome shotgun sequencing project. ACCESSION PJEM00000000 VERSION PJEM00000000.1 DBLINK BioProject: PRJNA399396 BioSample: SAMN07678086 KEYWORDS WGS. SOURCE Helogale parvula (dwarf mongoose) ORGANISM Helogale parvula Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Herpestidae; Helogale. REFERENCE 1 (bases 1 to 189370) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 189370) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (07-DEC-2017) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Helogale parvula whole genome shotgun (WGS) project has the project accession PJEM00000000. This version of the project (01) has the accession number PJEM01000000, and consists of sequences PJEM01000001-PJEM01189370. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. 52488 Assembly Name :: HelPar_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 32.3x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..189370 /organism="Helogale parvula" /mol_type="genomic DNA" /isolate="US077" /db_xref="taxon:210647" /dev_stage="adult" WGS PJEM01000001-PJEM01189370 // LOCUS PISU010000000 1263345 rc DNA linear MAM 15-JAN-2019 DEFINITION Vulpes lagopus isolate US066, whole genome shotgun sequencing project. ACCESSION PISU000000000 VERSION PISU000000000.1 DBLINK BioProject: PRJNA399424 BioSample: SAMN07678118 KEYWORDS WGS. SOURCE Vulpes lagopus (Arctic fox) ORGANISM Vulpes lagopus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Vulpes. REFERENCE 1 (bases 1 to 1263345) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 1263345) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (17-NOV-2017) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Vulpes lagopus whole genome shotgun (WGS) project has the project accession PISU000000000. This version of the project (01) has the accession number PISU010000000, and consists of sequences PISU010000001-PISU011263345. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. 52488 Assembly Name :: VulLag_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 36.8x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1263345 /organism="Vulpes lagopus" /mol_type="genomic DNA" /isolate="US066" /db_xref="taxon:494514" /dev_stage="adult" WGS PISU010000001-PISU011263345 // LOCUS PISV01000000 438792 rc DNA linear MAM 15-JAN-2019 DEFINITION Panthera onca isolate BS21, whole genome shotgun sequencing project. ACCESSION PISV00000000 VERSION PISV00000000.1 DBLINK BioProject: PRJNA399411 BioSample: SAMN07678103 KEYWORDS WGS. SOURCE Panthera onca (jaguar) ORGANISM Panthera onca Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Pantherinae; Panthera. REFERENCE 1 (bases 1 to 438792) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 438792) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (17-NOV-2017) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Panthera onca whole genome shotgun (WGS) project has the project accession PISV00000000. This version of the project (01) has the accession number PISV01000000, and consists of sequences PISV01000001-PISV01438792. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. 52488 Assembly Name :: PanOnc_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 60.7x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..438792 /organism="Panthera onca" /mol_type="genomic DNA" /isolate="BS21" /db_xref="taxon:9690" /sex="male" /dev_stage="adult" WGS PISV01000001-PISV01438792 // LOCUS PISW01000000 312364 rc DNA linear MAM 15-JAN-2019 DEFINITION Mungos mungo isolate US063, whole genome shotgun sequencing project. ACCESSION PISW00000000 VERSION PISW00000000.1 DBLINK BioProject: PRJNA399406 BioSample: SAMN07678097 KEYWORDS WGS. SOURCE Mungos mungo (banded mongoose) ORGANISM Mungos mungo Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Herpestidae; Mungos. REFERENCE 1 (bases 1 to 312364) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE The 200 mammals project: sequencing genomes by a novel cost-effective method, yielding a high resolution annotation of the human genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 312364) AUTHORS Johnson,J., Muren,E., Swofford,R., Turner-Maier,J., Marinescu,V.D., Genereux,D.P., Alfoldi,J., Birren,B., Karlsson,E.K. and Lindblad-Toh,K. TITLE Direct Submission JOURNAL Submitted (17-NOV-2017) Vertebrate Genome Biology, Broad Institute, 75 Ames Street, Cambridge, MA 02142, USA COMMENT The Mungos mungo whole genome shotgun (WGS) project has the project accession PISW00000000. This version of the project (01) has the accession number PISW01000000, and consists of sequences PISW01000001-PISW01312364. ##Genome-Assembly-Data-START## Assembly Method :: DISCOVAR de novo v. 52488 Assembly Name :: MunMun_v1_BIUU Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 46.7x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..312364 /organism="Mungos mungo" /mol_type="genomic DNA" /isolate="US063" /db_xref="taxon:210652" /dev_stage="adult" WGS PISW01000001-PISW01312364 // LOCUS RRCE01000000 3803 rc DNA linear VRT 20-DEC-2018 DEFINITION Calypte anna isolate BGI_N300, whole genome shotgun sequencing project. ACCESSION RRCE00000000 VERSION RRCE00000000.1 DBLINK BioProject: PRJNA489140 BioSample: SAMN02265252 KEYWORDS WGS. SOURCE Calypte anna (Anna's hummingbird) ORGANISM Calypte anna Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Caprimulgimorphae; Apodiformes; Trochilidae; Calypte. REFERENCE 1 (bases 1 to 3803) AUTHORS Jarvis,E.D., Rhie,A., Korlach,J., Fedrigo,O., Koren,S., Howe,K., Damas,J., Lovell,P., Mountcastle,J., Howard,J., Mello,C.V., Myers,G., Durbin,R., Lewin,H., Hastie,A., Salvaraj,S., Ning,Z., Wood,J., Mccarthy,S. and Phillippy,A. TITLE G10K-VGP Anna's hummingbird female genome, alternate haplotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 3803) AUTHORS Jarvis,E.D., Rhie,A., Korlach,J., Fedrigo,O., Koren,S., Howe,K., Damas,J., Lovell,P., Mountcastle,J., Howard,J., Mello,C.V., Myers,G., Durbin,R., Lewin,H., Hastie,A., Salvaraj,S., Ning,Z., Wood,J., Mccarthy,S. and Phillippy,A. TITLE Direct Submission JOURNAL Submitted (06-NOV-2018) Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA COMMENT The Calypte anna whole genome shotgun (WGS) project has the project accession RRCE00000000. This version of the project (01) has the accession number RRCE01000000, and consists of sequences RRCE01000001-RRCE01003803. This assembly represents the alternate haplotype of the diploid genome Calypte anna. The primary haplotype sequences are in WGS project RRCD00000000. ##Genome-Assembly-Data-START## Assembly Date :: 07-SEP-2018 Assembly Method :: FALCON v. 5.1.1; FALCON unzip v. 1.0.2; smrtanalysis Arrow polishing v. 5.1.0.26412; purge_haplotigs v. bit 7.10.2018; gEVAL manual curation v. 2018-09-07 Assembly Name :: bCalAnn1_v1.h Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 54.0x Sequencing Technology :: PacBio RSII; 10X Genomics linked reads ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..3803 /organism="Calypte anna" /mol_type="genomic DNA" /isolate="BGI_N300" /db_xref="taxon:9244" /sex="female" /country="USA" WGS RRCE01000001-RRCE01003803 // LOCUS PUFT02000000 1435 rc DNA linear MAM 11-DEC-2018 DEFINITION Bos indicus x Bos taurus breed Angus x Brahman F1 hybrid, whole genome shotgun sequencing project. ACCESSION PUFT00000000 VERSION PUFT00000000.2 DBLINK BioProject: PRJNA432857 BioSample: SAMN08473802 KEYWORDS WGS. SOURCE Bos indicus x Bos taurus (hybrid cattle) ORGANISM Bos indicus x Bos taurus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos. REFERENCE 1 (bases 1 to 1435) AUTHORS Low,W.Y., Tearle,R., Bickhart,D.M., Rosen,B.D., Koren,S., Rhie,A., Hiendleder,S., Phillippy,A.M., Smith,T.P.L. and Williams,J.L. TITLE Haplotype-resolved cattle genomes JOURNAL Unpublished REFERENCE 2 (bases 1 to 1435) AUTHORS Koren,S., Rhie,A., Walenz,B., Dilthey,A.T., Bickhart,D.M., Kingan,S., Hiendleder,S., Williams,J.L., Smith,T.P. and Phillippy,A.M. TITLE Direct Submission JOURNAL Submitted (09-FEB-2018) CSGB, NHGRI/NIH, NIH 49 Convent Drive Room 4C36A, Bethesda, MD 20892, USA REFERENCE 3 (bases 1 to 1435) AUTHORS Low,W.Y., Tearle,R., Bickhart,D.M., Rosen,B.D., Koren,S., Rhie,A., Hiendleder,S., Phillippy,A.M., Smith,T.P.L. and Williams,J.L. TITLE Direct Submission JOURNAL Submitted (08-NOV-2018) School of Animal and Veterinary Sciences, University of Adelaide, University of Adelaide Roseworthy Campus, Mudla Wirra Road, Roseworthy, SA 5371, Australia COMMENT On Nov 28, 2018 this sequence version replaced PUFT00000000.1. The Bos indicus x Bos taurus whole genome shotgun (WGS) project has the project accession PUFT00000000. This version of the project (02) has the accession number PUFT02000000, and consists of sequences PUFT02000001-PUFT02001435. This assembly represents the Bos taurus taurus (paternal) haplotype and includes the autosomes plus the Y chromosome. The maternal haplotype sequences are in WGS project PUFS00000000. ##Genome-Assembly-Data-START## Assembly Method :: TrioCanu v. 1.6 Assembly Name :: UOA_Angus_1 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 136.0x Sequencing Technology :: PacBio RSII; PacBio Sequel; Illumina NextSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1435 /organism="Bos indicus x Bos taurus" /mol_type="genomic DNA" /db_xref="taxon:30522" /sex="male" /tissue_type="lung" /dev_stage="fetus" /collected_by="Stefan Hiendleder" /note="breed: Angus x Brahman F1 hybrid" WGS PUFT02000001-PUFT02001435 WGS_SCAFLD CM011774-CM011803 // LOCUS PUFS02000000 1251 rc DNA linear MAM 11-DEC-2018 DEFINITION Bos indicus x Bos taurus breed Angus x Brahman F1 hybrid, whole genome shotgun sequencing project. ACCESSION PUFS00000000 VERSION PUFS00000000.2 DBLINK BioProject: PRJNA432857 BioSample: SAMN08473802 KEYWORDS WGS. SOURCE Bos indicus x Bos taurus (hybrid cattle) ORGANISM Bos indicus x Bos taurus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos. REFERENCE 1 (bases 1 to 1251) AUTHORS Low,W.Y., Tearle,R., Bickhart,D.M., Rosen,B.D., Koren,S., Rhie,A., Hiendleder,S., Phillippy,A.M., Smith,T.P.L. and Williams,J.L. TITLE Haplotype-resolved cattle genomes JOURNAL Unpublished REFERENCE 2 (bases 1 to 1251) AUTHORS Koren,S., Rhie,A., Walenz,B., Dilthey,A.T., Bickhart,D.M., Kingan,S., Hiendleder,S., Williams,J.L., Smith,T.P. and Phillippy,A.M. TITLE Direct Submission JOURNAL Submitted (09-FEB-2018) CSGB, NHGRI/NIH, NIH 49 Convent Drive Room 4C36A, Bethesda, MD 20892, USA REFERENCE 3 (bases 1 to 1251) AUTHORS Low,W.Y., Tearle,R., Bickhart,D.M., Rosen,B.D., Koren,S., Rhie,A., Hiendleder,S., Phillippy,A.M., Smith,T.P.L. and Williams,J.L. TITLE Direct Submission JOURNAL Submitted (10-NOV-2018) School of Animal and Veterinary Sciences, University of Adelaide, University of Adelaide Roseworthy Campus, Mudla Wirra Road, Roseworthy, SA 5371, Australia COMMENT On Nov 28, 2018 this sequence version replaced PUFS00000000.1. The Bos indicus x Bos taurus whole genome shotgun (WGS) project has the project accession PUFS00000000. This version of the project (02) has the accession number PUFS02000000, and consists of sequences PUFS02000001-PUFS02001251. This assembly represents the Bos taurus indicus (maternal) haplotype and includes the autosomes plus the X chromosome and mitochondria. The paternal haplotype sequences are in WGS project PUFT00000000. ##Genome-Assembly-Data-START## Assembly Method :: TrioCanu v. 1.6 Assembly Name :: UOA_Brahman_1 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 136.0x Sequencing Technology :: PacBio Sequel; PacBio RSII; Illumina NextSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1251 /organism="Bos indicus x Bos taurus" /mol_type="genomic DNA" /db_xref="taxon:30522" /sex="male" /tissue_type="lung" /dev_stage="fetus" /collected_by="Stefan Hiendleder" /note="breed: Angus x Brahman F1 hybrid" WGS PUFS02000001-PUFS02001251 WGS_SCAFLD CM010492 WGS_SCAFLD CM011804-CM011833 // LOCUS RFLZ01000000 387819 rc DNA linear MAM 31-OCT-2018 DEFINITION Odocoileus hemionus sitkensis isolate Cn_RI01, whole genome shotgun sequencing project. ACCESSION RFLZ00000000 VERSION RFLZ00000000.1 DBLINK BioProject: PRJNA476345 BioSample: SAMN09430949 KEYWORDS WGS. SOURCE Odocoileus hemionus sitkensis ORGANISM Odocoileus hemionus sitkensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Cervidae; Odocoileinae; Odocoileus. REFERENCE 1 (bases 1 to 387819) AUTHORS Leelakumari,S., Taylor,G.A., Kirk,H., Tse,K., Cheng,D., Chuah,E., Pandoh,P., Hirst,C., Zhao,Y., Mungall,A.J., Moore,R., Marra,M.A., Irvine,R., Russello,M. and Jones,S.J.M. TITLE Sitka deer (Odocoileus hemionus sitkensis) genome sequencing and assembly JOURNAL Unpublished REFERENCE 2 (bases 1 to 387819) AUTHORS Leelakumari,S., Taylor,G.A., Kirk,H., Tse,K., Cheng,D., Chuah,E., Pandoh,P., Hirst,C., Zhao,Y., Mungall,A.J., Moore,R., Marra,M.A., Irvine,R., Russello,M. and Jones,S.J. TITLE Direct Submission JOURNAL Submitted (24-OCT-2018) Genome Sciences Centre, BC Cancer Agency, Canada's Michael Smith Genome Sciences Centre, #100 - 570 West 7th Ave, Vancouver, BC V5Z-4S6, Canada COMMENT The Odocoileus hemionus sitkensis whole genome shotgun (WGS) project has the project accession RFLZ00000000. This version of the project (01) has the accession number RFLZ01000000, and consists of sequences RFLZ01000001-RFLZ01387819. ##Genome-Assembly-Data-START## Assembly Date :: SEP-2018 Assembly Method :: supernova v. 2.1.1 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 26.0x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..387819 /organism="Odocoileus hemionus sitkensis" /mol_type="genomic DNA" /isolate="Cn_RI01" /sub_species="sitkensis" /db_xref="taxon:9878" /sex="female" /tissue_type="muscle" /dev_stage="adult" WGS RFLZ01000001-RFLZ01387819 WGS_SCAFLD ML065826-ML092960 // LOCUS RCUC01000000 173916 rc DNA linear MAM 31-OCT-2018 DEFINITION Taxidea taxus jeffersonii isolate Tt_UBC01, whole genome shotgun sequencing project. ACCESSION RCUC00000000 VERSION RCUC00000000.1 DBLINK BioProject: PRJNA478572 BioSample: SAMN09519665 KEYWORDS WGS. SOURCE Taxidea taxus jeffersonii ORGANISM Taxidea taxus jeffersonii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Mustelidae; Taxidiinae; Taxidea. REFERENCE 1 (bases 1 to 173916) AUTHORS Ashkani,J., Leelakumari,S., Taylor,G.A., Tse,K., Cheng,D., Chuah,E., Kirk,H., Pandoh,P., Troussard,A., Zhao,Y., Mungall,A.J., Moore,R., Marra,M.A., Ford,B., Russello,M. and Jones,S.J.M. TITLE American badger genome assembly JOURNAL Unpublished REFERENCE 2 (bases 1 to 173916) AUTHORS Ashkani,J., Leelakumari,S., Taylor,G.A., Tse,K., Cheng,D., Chuah,E., Kirk,H., Pandoh,P., Troussard,A., Zhao,Y., Mungall,A.J., Moore,R., Marra,M.A., Ford,B., Russello,M. and Jones,S.J. TITLE Direct Submission JOURNAL Submitted (15-OCT-2018) Genome Sciences Centre, BC Cancer Agency, Canada's Michael Smith Genome Sciences Centre, #100 - 570 West 7th Ave, Vancouver, BC V5Z-4S6, Canada COMMENT The Taxidea taxus jeffersonii whole genome shotgun (WGS) project has the project accession RCUC00000000. This version of the project (01) has the accession number RCUC01000000, and consists of sequences RCUC01000001-RCUC01173916. ##Genome-Assembly-Data-START## Assembly Date :: AUG-2018 Assembly Method :: supernova v. 2.0.1 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 44.0x Sequencing Technology :: Illumina MiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..173916 /organism="Taxidea taxus jeffersonii" /mol_type="genomic DNA" /isolate="Tt_UBC01" /sub_species="jeffersonii" /db_xref="taxon:2282171" /sex="male" /tissue_type="ear" /dev_stage="adult" WGS RCUC01000001-RCUC01173916 WGS_SCAFLD ML092961-ML112587 // LOCUS RCWK01000000 21792 rc DNA linear MAM 30-OCT-2018 DEFINITION Lagenorhynchus obliquidens isolate GAN/ISIS:26980383/991018, whole genome shotgun sequencing project. ACCESSION RCWK00000000 VERSION RCWK00000000.1 DBLINK BioProject: PRJNA475306 BioSample: SAMN09386610 KEYWORDS WGS. SOURCE Lagenorhynchus obliquidens (Pacific white-sided dolphin) ORGANISM Lagenorhynchus obliquidens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Lagenorhynchus. REFERENCE 1 (bases 1 to 21792) AUTHORS Culibrk,L., Leelakumari,S., Taylor,G.A., Tan,R., Tse,K., Cheng,D., Chuah,E., Kirk,H., Macleod,T., Pandoh,P., Troussard,A., Zhao,Y., Mungall,A.J., Moore,R., Marra,M.A., Haulena,M. and Jones,S.J.M. TITLE The genome of the whitesided dolphin JOURNAL Unpublished REFERENCE 2 (bases 1 to 21792) AUTHORS Culibrk,L., Leelakumari,S., Taylor,G.A., Tan,R., Tse,K., Cheng,D., Chuah,E., Kirk,H., Macleod,T., Pandoh,P., Troussard,A., Zhao,Y., Mungall,A.J., Moore,R., Marra,M.A., Haulena,M. and Jones,S.J. TITLE Direct Submission JOURNAL Submitted (15-OCT-2018) Genome Sciences Centre, BC Cancer Agency, Canada's Michael Smith Genome Sciences Centre, #100 - 570 West 7th Ave, Vancouver, BC V5Z-4S6, Canada COMMENT The Lagenorhynchus obliquidens whole genome shotgun (WGS) project has the project accession RCWK00000000. This version of the project (01) has the accession number RCWK01000000, and consists of sequences RCWK01000001-RCWK01021792. ##Genome-Assembly-Data-START## Assembly Date :: JUN-2018 Assembly Method :: supernova v. 2.1.1 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 35.68x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..21792 /organism="Lagenorhynchus obliquidens" /mol_type="genomic DNA" /isolate="GAN/ISIS:26980383/991018" /db_xref="taxon:90247" /sex="female" /tissue_type="blood" /dev_stage="adult" WGS RCWK01000001-RCWK01021792 WGS_SCAFLD ML064989-ML065825 // LOCUS QVQU01000000 724145 rc DNA linear INV 13-SEP-2018 DEFINITION Machilis hrabei, whole genome shotgun sequencing project. ACCESSION QVQU00000000 VERSION QVQU00000000.1 DBLINK BioProject: PRJNA171753 BioSample: SAMN02645830 KEYWORDS WGS. SOURCE Machilis hrabei ORGANISM Machilis hrabei Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Monocondylia; Archaeognatha; Machilidae; Machilis. REFERENCE 1 (bases 1 to 724145) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hernandez,B., Skinner,E., Javaid,M., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Hughes,D., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Machilis hrabei genome sequencing JOURNAL Unpublished REFERENCE 2 (bases 1 to 724145) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hughes,D., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Osuji,N., Pu,L.-L., Puazo,M., Skinner,E., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (20-AUG-2018) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA COMMENT The Machilis hrabei whole genome shotgun (WGS) project has the project accession QVQU00000000. This version of the project (01) has the accession number QVQU01000000, and consists of sequences QVQU01000001-QVQU01724145. ##Genome-Assembly-Data-START## Assembly Date :: 14-JUN-2014 Assembly Method :: AllPaths LG v. 44620; Atlas Link v. 1.0; Atlas GapFill v. 2.2 Assembly Name :: Mhra_1.0 Expected Final Version :: no Genome Coverage :: 140.0x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..724145 /organism="Machilis hrabei" /mol_type="genomic DNA" /isolation_source="collected directly from the wild" /specimen_voucher="ZFMK-TIS-3889" /db_xref="taxon:438506" /sex="male" /tissue_type="Whole organism" /country="Austria: Vienna, Nasenweg" /collection_date="13-Mar-2012" /collected_by="Dr. Nikolaus U. Szucsich" WGS QVQU01000001-QVQU01724145 WGS_SCAFLD KZ868871-KZ983956 // LOCUS QCXR01000000 8673 rc DNA linear PLN 31-JUL-2018 DEFINITION Fagus sylvatica isolate FS_037, whole genome shotgun sequencing project. ACCESSION QCXR00000000 VERSION QCXR00000000.1 DBLINK BioProject: PRJNA450822 BioSample: SAMN08948264 KEYWORDS WGS. SOURCE Fagus sylvatica (European beech) ORGANISM Fagus sylvatica Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Fagus. REFERENCE 1 (bases 1 to 8673) AUTHORS Ulaszewski,B., Warmbier,J. and Burczyk,J. TITLE Preliminary (v. 0.5) assembly of Fagus sylvatica JOURNAL Unpublished REFERENCE 2 (bases 1 to 8673) AUTHORS Ulaszewski,B., Warmbier,J. and Burczyk,J. TITLE Direct Submission JOURNAL Submitted (18-APR-2018) Genetics, Kazimierz Wielki University, Chodkiewicza 30, Bydgoszcz 85-064, Poland COMMENT The Fagus sylvatica whole genome shotgun (WGS) project has the project accession QCXR00000000. This version of the project (01) has the accession number QCXR01000000, and consists of sequences QCXR01000001-QCXR01008673. ##Genome-Assembly-Data-START## Assembly Date :: 2017 Assembly Method :: Platanus AND DBG2OLC v. Novermber-2017 Assembly Name :: UKW_Fsyl_0.5 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 50.0x Sequencing Technology :: Illumina HiSeq; PacBio ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..8673 /organism="Fagus sylvatica" /mol_type="genomic DNA" /isolate="FS_037" /db_xref="taxon:28930" /tissue_type="leaf" /dev_stage="adult" /ecotype="Galio odorati-Fagetum" /country="Poland: Jamy Forest District" /lat_lon="53.585828 N 18.935269 E" /collected_by="Bartosz Ulaszewski" WGS QCXR01000001-QCXR01008673 // LOCUS QLOG01000000 52954 rc DNA linear MAM 27-JUN-2018 DEFINITION Callorhinus ursinus isolate GAN/ISIS: 27379988/994484, whole genome shotgun sequencing project. ACCESSION QLOG00000000 VERSION QLOG00000000.1 DBLINK BioProject: PRJNA475116 BioSample: SAMN09379881 KEYWORDS WGS. SOURCE Callorhinus ursinus (northern fur seal) ORGANISM Callorhinus ursinus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Otariidae; Callorhinus. REFERENCE 1 (bases 1 to 52954) AUTHORS Haulena,M., Leelakumari,S., Taylor,G.A., Tan,R., Tse,K., Cheung,D., Chuah,E., Kirk,H., Pandoh,P., Hirst,C., Zhao,Y., Mungall,A.J., Moore,R., Marra,M. and Jones,S.J.M. TITLE The genome of the northern fur seal JOURNAL Unpublished REFERENCE 2 (bases 1 to 52954) AUTHORS Haulena,M., Leelakumari,S., Taylor,G.A., Tan,R., Tse,K., Cheung,D., Chuah,E., Kirk,H., Pandoh,P., Hirst,C., Zhao,Y., Mungall,A.J., Moore,R., Marra,M. and Jones,S.J. TITLE Direct Submission JOURNAL Submitted (19-JUN-2018) Genome Sciences Centre, BC Cancer Agency, Canada's Michael Smith Genome Sciences Centre, #100 - 570 West 7th Ave, Vancouver, BC V5Z-4S6, Canada COMMENT The Callorhinus ursinus whole genome shotgun (WGS) project has the project accession QLOG00000000. This version of the project (01) has the accession number QLOG01000000, and consists of sequences QLOG01000001-QLOG01052954. ##Genome-Assembly-Data-START## Assembly Date :: JUN-2018 Assembly Method :: supernova v. 2.0.1 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 27.44x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..52954 /organism="Callorhinus ursinus" /mol_type="genomic DNA" /isolate="GAN/ISIS: 27379988/994484" /db_xref="taxon:34884" /sex="female" /tissue_type="blood" /dev_stage="adult" WGS QLOG01000001-QLOG01052954 WGS_SCAFLD KZ836204-KZ839387 // LOCUS JJNS02000000 149799 rc DNA linear INV 20-JUN-2018 DEFINITION Homalodisca vitripennis isolate HVIT.00, whole genome shotgun sequencing project. ACCESSION JJNS00000000 VERSION JJNS00000000.2 DBLINK BioProject: PRJNA168119 BioSample: SAMN02728788 KEYWORDS WGS. SOURCE Homalodisca vitripennis (glassy-winged sharpshooter) ORGANISM Homalodisca vitripennis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Auchenorrhyncha; Membracoidea; Cicadellidae; Cicadellinae; Proconiini; Homalodisca. REFERENCE 1 (bases 1 to 149799) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hernandez,B., Skinner,E., Javaid,M., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Hughes,D., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Homalodisca vitripennis Genome sequencing and assembly JOURNAL Unpublished REFERENCE 2 (bases 1 to 149799) AUTHORS Qu,J., Murali,S.C., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R.D., Hernandez,B., Javaid,M., Jayaseelan,J.C., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Ongeri,F., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Richards,S., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (11-APR-2014) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA REFERENCE 3 (bases 1 to 149799) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hughes,D., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Osuji,N., Pu,L.-L., Puazo,M., Skinner,E., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (11-MAY-2018) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA COMMENT On Jun 15, 2018 this sequence version replaced JJNS00000000.1. The Homalodisca vitripennis whole genome shotgun (WGS) project has the project accession JJNS00000000. This version of the project (02) has the accession number JJNS02000000, and consists of sequences JJNS02000001-JJNS02149799. ##Genome-Assembly-Data-START## Assembly Date :: APR-2016 Assembly Method :: AllPaths LG v. 35218; Atlas Link v. 1.0; Atlas GapFill v. 2.2; redundans v. 0.12c Assembly Name :: Hvit_2.0 Expected Final Version :: no Genome Coverage :: 68.3x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..149799 /organism="Homalodisca vitripennis" /mol_type="genomic DNA" /isolate="HVIT.00" /isolation_source="leafhopper colony reared for 3 years in culture, on seedlings of sweet orange, okra, and basil" /db_xref="taxon:197043" /sex="pooled males and females" /dev_stage="adult" /country="USA: southeast Florida" /collection_date="28-May-2012" WGS JJNS02000001-JJNS02149799 WGS_SCAFLD KZ826510-KZ836023 // LOCUS JHQO02000000 150946 rc DNA linear INV 02-MAY-2018 DEFINITION Oncopeltus fasciatus isolate OFAS.00, whole genome shotgun sequencing project. ACCESSION JHQO00000000 VERSION JHQO00000000.2 DBLINK BioProject: PRJNA229125 BioSample: SAMN02645558 KEYWORDS WGS. SOURCE Oncopeltus fasciatus (milkweed bug) ORGANISM Oncopeltus fasciatus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera; Panheteroptera; Pentatomomorpha; Lygaeoidea; Lygaeidae; Lygaeinae; Oncopeltus. REFERENCE 1 (bases 1 to 150946) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hernandez,B., Skinner,E., Javaid,M., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Hughes,D., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Whole genome assembly of Oncopeltus fasciatus using multiple sequencing technologies JOURNAL Unpublished REFERENCE 2 (bases 1 to 150946) AUTHORS Murali,S.C., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Downs,B., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R.D., Hernandez,B., Javaid,M., Jayaseelan,J.C., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Ongeri,F., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Richards,S., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (31-MAR-2014) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA REFERENCE 3 (bases 1 to 150946) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hughes,D., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Osuji,N., Pu,L.-L., Puazo,M., Skinner,E., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (05-FEB-2018) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA COMMENT On May 1, 2018 this sequence version replaced JHQO00000000.1. The Oncopeltus fasciatus whole genome shotgun (WGS) project has the project accession JHQO00000000. This version of the project (02) has the accession number JHQO02000000, and consists of sequences JHQO02000001-JHQO02150946. ##Genome-Assembly-Data-START## Assembly Date :: APR-2016 Assembly Method :: AllPaths LG v. 44620; Atlas Link v. 1.0; Atlas GapFill v. 2.2; redundans v. 0.12c Assembly Name :: Ofas_2.0 Expected Final Version :: no Genome Coverage :: 106.9x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..150946 /organism="Oncopeltus fasciatus" /mol_type="genomic DNA" /isolate="OFAS.00" /db_xref="taxon:7536" /sex="pooled males and females" /tissue_type="whole organism" /dev_stage="adult" /collection_date="28-Aug-2012/18-Sep-2012" /note="undomesticated insect" WGS JHQO02000001-JHQO02150946 WGS_SCAFLD KZ806866-KZ818944 // LOCUS PYGN01000000 24818 rc DNA linear INV 26-MAR-2018 DEFINITION Blattella germanica strain American Cyanamid = Orlando Normal isolate EBB2017, whole genome shotgun sequencing project. ACCESSION PYGN00000000 VERSION PYGN00000000.1 DBLINK BioProject: PRJNA427252 BioSample: SAMN08772480 KEYWORDS WGS. SOURCE Blattella germanica (German cockroach) ORGANISM Blattella germanica Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Polyneoptera; Dictyoptera; Blattodea; Blaberoidea; Ectobiidae; Blattellinae; Blattella. REFERENCE 1 (bases 1 to 24818) AUTHORS Harrison,M.C., Jongepier,E., Robertson,H.M., Arning,N., Bitard-Feildel,T., Chao,H., Childers,C.P., Dinh,H., Doddapaneni,H., Dugan,S., Gowin,J., Greiner,C., Han,Y., Hu,H., Hughes,D.S.T., Huylmans,A.K., Kemena,C., Kremer,L.P.M., Lee,S.L., Lopez-Ezquerra,A., Mallet,L., Monroy-Kuhn,J.M., Moser,A., Murali,S.C., Muzny,D.M., Otani,S., Piulachs,M.D., Poelchau,M., Qu,J., Schaub,F., Wada-Katsumata,A., Worley,K.C., Xie,Q., Ylla,G., Poulsen,M., Gibbs,R.A., Schal,C., Richards,S., Belles,X., Korb,J. and Bornberg-Bauer,E. TITLE Hemimetabolous genomes reveal molecular basis of termite eusociality JOURNAL Nat Ecol Evol 2 (3), 557-566 (2018) PUBMED 29403074 REFERENCE 2 (bases 1 to 24818) AUTHORS Jongepier,E. TITLE Direct Submission JOURNAL Submitted (08-MAR-2018) Molecular Evolution and Bioinformatics, Westfaelische Wilhelms-University, Huefferstrasse 1, Muenster 48149, Germany COMMENT The Blattella germanica whole genome shotgun (WGS) project has the project accession PYGN00000000. This version of the project (01) has the accession number PYGN01000000, and consists of sequences PYGN01000001-PYGN01024818. ##Genome-Assembly-Data-START## Assembly Date :: 2014 Assembly Method :: AllPaths LG v. 44620; Atlas Link v. 1.0; Atlas GapFill v. 2.2 Assembly Name :: Bger_1.1 Expected Final Version :: yes Genome Coverage :: 158.5x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..24818 /organism="Blattella germanica" /mol_type="genomic DNA" /strain="American Cyanamid = Orlando Normal" /isolate="EBB2017" /db_xref="taxon:6973" /sex="pooled male and female" /tissue_type="whole body" /dev_stage="adult" WGS PYGN01000001-PYGN01024818 // LOCUS PXIH010000000 1038669 rc DNA linear INV 21-MAR-2018 DEFINITION Euperipatoides rowelli isolate MRLB_TSF, whole genome shotgun sequencing project. ACCESSION PXIH000000000 VERSION PXIH000000000.1 DBLINK BioProject: PRJNA203089 BioSample: SAMN02644986 KEYWORDS WGS. SOURCE Euperipatoides rowelli ORGANISM Euperipatoides rowelli Eukaryota; Metazoa; Ecdysozoa; Onychophora; Udeonychophora; Euonychophora; Peripatopsidae; Euperipatoides. REFERENCE 1 (bases 1 to 1038669) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hernandez,B., Skinner,E., Javaid,M., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Hughes,D., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Euperipatoides rowelli Genome sequencing JOURNAL Unpublished REFERENCE 2 (bases 1 to 1038669) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hughes,D., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Osuji,N., Pu,L.-L., Puazo,M., Skinner,E., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (08-MAR-2018) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA COMMENT The Euperipatoides rowelli whole genome shotgun (WGS) project has the project accession PXIH000000000. This version of the project (01) has the accession number PXIH010000000, and consists of sequences PXIH010000001-PXIH011038669. ##Genome-Assembly-Data-START## Assembly Date :: 02-OCT-2014 Assembly Method :: AllPaths LG v. 44620 Assembly Name :: Erow_1.0 Expected Final Version :: no Genome Coverage :: 140.0x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1038669 /organism="Euperipatoides rowelli" /mol_type="genomic DNA" /isolate="MRLB_TSF" /isolation_source="DNA was obtained from a single specimen. The animal was starved and the gut was removed prior to DNA/RNA extraction to avoid contamination" /db_xref="taxon:49087" /sex="female" /tissue_type="Whole organism without the gut" /country="Australia: New South Wales, Tallaganda State Forest" /note="specimen obtained from natural habitat" WGS PXIH010000001-PXIH011038669 WGS_SCAFLD PXIH01S000001-PXIH01S311309 // LOCUS JHBY02000000 136873 rc DNA linear INV 14-FEB-2018 DEFINITION Gerris buenoi isolate GBUE.00, whole genome shotgun sequencing project. ACCESSION JHBY00000000 VERSION JHBY00000000.2 DBLINK BioProject: PRJNA203045 BioSample: SAMN02800617 KEYWORDS WGS. SOURCE Gerris buenoi ORGANISM Gerris buenoi Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera; Gerromorpha; Gerroidea; Gerridae; Gerrinae; Gerris. REFERENCE 1 (bases 1 to 136873) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hernandez,B., Skinner,E., Javaid,M., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Hughes,D., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Gerris buenoi Genome sequencing and assembly JOURNAL Unpublished REFERENCE 2 (bases 1 to 136873) AUTHORS Murali,S.C., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Downs,B., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R.D., Hernandez,B., Javaid,M., Jayaseelan,J.C., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Ongeri,F., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (24-MAR-2014) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA REFERENCE 3 (bases 1 to 136873) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hughes,D., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Osuji,N., Pu,L.-L., Puazo,M., Skinner,E., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (09-FEB-2018) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA COMMENT On Feb 12, 2018 this sequence version replaced JHBY00000000.1. The Gerris buenoi whole genome shotgun (WGS) project has the project accession JHBY00000000. This version of the project (02) has the accession number JHBY02000000, and consists of sequences JHBY02000001-JHBY02136873. ##Genome-Assembly-Data-START## Assembly Date :: APR-2016 Assembly Method :: AllPaths LG v. 44620; Atlas Link v. 1.0; Atlas GapFill v. 2.2; redundans v. 0.12c Assembly Name :: Gbue_2.0 Expected Final Version :: no Genome Coverage :: 73.8x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..136873 /organism="Gerris buenoi" /mol_type="genomic DNA" /isolate="GBUE.00" /isolation_source="DNA extracted after approximately eight cycles of sibling-sibling crosses in the lab" /isolation_source="Natural habitat (pond)" /db_xref="taxon:56086" /sex="pooled males and females" /tissue_type="whole organism" /dev_stage="adult" /country="Canada: Holland Marsh Canal, Ontario" /collection_date="01-Oct-2012" /collected_by="Locke Rowe" /note="undomesticated insect" WGS JHBY02000001-JHBY02136873 WGS_SCAFLD KZ651037-KZ662692 // LOCUS JJRX02000000 201508 rc DNA linear INV 06-FEB-2018 DEFINITION Latrodectus hesperus isolate LHES.00, whole genome shotgun sequencing project. ACCESSION JJRX00000000 VERSION JJRX00000000.2 DBLINK BioProject: PRJNA168123 BioSample: SAMN02261529 KEYWORDS WGS. SOURCE Latrodectus hesperus (western black widow) ORGANISM Latrodectus hesperus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Araneae; Araneomorphae; Entelegynae; Araneoidea; Theridiidae; Latrodectus. REFERENCE 1 (bases 1 to 201508) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hernandez,B., Skinner,E., Javaid,M., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Hughes,D., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Latrodectus hesperus isolate:LHES.00 Genome sequencing and assembly JOURNAL Unpublished REFERENCE 2 (bases 1 to 201508) AUTHORS Qu,J., Murali,S.C., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Downs,B., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R.D., Hernandez,B., Javaid,M., Jayaseelan,J.C., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Ongeri,F., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Richards,S., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (15-APR-2014) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA REFERENCE 3 (bases 1 to 201508) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hughes,D., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Osuji,N., Pu,L.-L., Puazo,M., Skinner,E., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (01-FEB-2018) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA COMMENT On Feb 5, 2018 this sequence version replaced JJRX00000000.1. The Latrodectus hesperus whole genome shotgun (WGS) project has the project accession JJRX00000000. This version of the project (02) has the accession number JJRX02000000, and consists of sequences JJRX02000001-JJRX02201508. ##Genome-Assembly-Data-START## Assembly Date :: APR-2016 Assembly Method :: AllPaths LG v. 35218; Atlas Link v. 1.0; Atlas GapFill v. 2.2; redundans v. 0.12c Assembly Name :: Lhes_2.0 Expected Final Version :: no Genome Coverage :: 48.0x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..201508 /organism="Latrodectus hesperus" /mol_type="genomic DNA" /isolate="LHES.00" /isolation_source="collected in the wild" /db_xref="taxon:256737" /sex="female" /tissue_type="Whole organism" /country="USA: University of California, Riverside campus, Riverside County, California" /collection_date="Aug-2011" WGS JJRX02000001-JJRX02201508 WGS_SCAFLD KZ627166-KZ646669 // LOCUS JENH02000000 23185 rc DNA linear INV 29-JAN-2018 DEFINITION Agrilus planipennis isolate EAB-ADULT, whole genome shotgun sequencing project. ACCESSION JENH00000000 VERSION JENH00000000.2 DBLINK BioProject: PRJNA230921 BioSample: SAMN02439909 KEYWORDS WGS. SOURCE Agrilus planipennis (emerald ash borer) ORGANISM Agrilus planipennis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Elateriformia; Buprestoidea; Buprestidae; Agrilinae; Agrilus. REFERENCE 1 (bases 1 to 23185) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hernandez,B., Skinner,E., Javaid,M., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Hughes,D., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Whole genome sequencing, assembly and annotation of Agrilus planipennis JOURNAL Unpublished REFERENCE 2 (bases 1 to 23185) AUTHORS Qu,J., Murali,S.C., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Downs,B., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R.D., Hernandez,B., Javaid,M., Jayaseelan,J.C., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Ongeri,F., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Richards,S., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (14-FEB-2014) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA REFERENCE 3 (bases 1 to 23185) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hughes,D., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Osuji,N., Pu,L.-L., Puazo,M., Skinner,E., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (17-OCT-2017) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA COMMENT On Jan 3, 2018 this sequence version replaced JENH00000000.1. The Agrilus planipennis whole genome shotgun (WGS) project has the project accession JENH00000000. This version of the project (02) has the accession number JENH02000000, and consists of sequences JENH02000001-JENH02023185. ##Genome-Assembly-Data-START## Assembly Date :: APR-2016 Assembly Method :: AllPaths LG v. 44620; Atlas Link v. 1.0; Atlas GapFill v. 2.2; redundans v. 0.12c Assembly Name :: Apla_2.0 Expected Final Version :: no Genome Coverage :: 124.7x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..23185 /organism="Agrilus planipennis" /mol_type="genomic DNA" /isolate="EAB-ADULT" /isolation_source="infested green ash trees in a residential area" /host="Fraxinus pennsylvanica (green ash)" /db_xref="taxon:224129" /sex="female" /tissue_type="entire body" /dev_stage="adult" /country="USA: Clinton, Prince George's County, Maryland" /collection_date="31-Jul-2013" /note="authority: Fairmaire" WGS JENH02000001-JENH02023185 WGS_SCAFLD KZ625026-KZ626730 // LOCUS AOFN02000000 936 rc DNA linear INV 29-JAN-2018 DEFINITION Athalia rosae isolate CS-ADULT, whole genome shotgun sequencing project. ACCESSION AOFN00000000 VERSION AOFN00000000.2 DBLINK BioProject: PRJNA167403 BioSample: SAMN02953829 KEYWORDS WGS. SOURCE Athalia rosae (coleseed sawfly) ORGANISM Athalia rosae Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Tenthredinoidea; Tenthredinidae; Allantinae; Athalia. REFERENCE 1 (bases 1 to 936) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hernandez,B., Skinner,E., Javaid,M., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Hughes,D., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Athalia rosae genome sequencing and assembly JOURNAL Unpublished REFERENCE 2 (bases 1 to 936) AUTHORS Qu,J., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Hernandez,B., Javaid,M., Jayaseelan,J.C., Kalra,D., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Ongeri,F., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (11-JAN-2013) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA REFERENCE 3 (bases 1 to 936) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hughes,D., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Osuji,N., Pu,L.-L., Puazo,M., Skinner,E., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (17-OCT-2017) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA COMMENT On Jan 3, 2018 this sequence version replaced AOFN00000000.1. The Athalia rosae whole genome shotgun (WGS) project has the project accession AOFN00000000. This version of the project (02) has the accession number AOFN02000000, and consists of sequences AOFN02000001-AOFN02000936. ##Genome-Assembly-Data-START## Assembly Date :: APR-2016 Assembly Method :: AllPaths v. 35218; ATLAS-link v. 1.0; ATLAS-gapfill v. 2.2; redundans v. 0.12c Assembly Name :: Aros_2.0 Expected Final Version :: no Genome Coverage :: 467.2x Sequencing Technology :: Illumina HiDrw ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..936 /organism="Athalia rosae" /mol_type="genomic DNA" /isolate="CS-ADULT" /isolation_source="whole body haploid adult males from a single mother" /db_xref="taxon:37344" /sex="male" /dev_stage="adult" /country="Japan" /collection_date="Sep-2011" /note="Sample from a laboratory stock maintained as wild type. Originally frozen and stored Sep-2011. DNA was extracted Mar-2012." WGS AOFN02000001-AOFN02000936 WGS_SCAFLD KZ624902-KZ625025 // LOCUS JPZV02000000 72293 rc DNA linear INV 19-JAN-2018 DEFINITION Blattella germanica strain American Cyanamid = Orlando Normal breed German cockroach, whole genome shotgun sequencing project. ACCESSION JPZV00000000 VERSION JPZV00000000.2 DBLINK BioProject: PRJNA203136 BioSample: SAMN02644979 KEYWORDS WGS. SOURCE Blattella germanica (German cockroach) ORGANISM Blattella germanica Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Polyneoptera; Dictyoptera; Blattodea; Blaberoidea; Ectobiidae; Blattellinae; Blattella. REFERENCE 1 (bases 1 to 72293) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hernandez,B., Skinner,E., Javaid,M., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Hughes,D., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Blattella germanica Genome sequencing JOURNAL Unpublished REFERENCE 2 (bases 1 to 72293) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hughes,D., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Osuji,N., Pu,L.-L., Puazo,M., Skinner,E., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (14-AUG-2014) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA REFERENCE 3 (bases 1 to 72293) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hughes,D., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Osuji,N., Pu,L.-L., Puazo,M., Skinner,E., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (09-JAN-2018) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA COMMENT On Jan 19, 2018 this sequence version replaced JPZV00000000.1. The Blattella germanica whole genome shotgun (WGS) project has the project accession JPZV00000000. This version of the project (02) has the accession number JPZV02000000, and consists of sequences JPZV02000001-JPZV02072293. ##Genome-Assembly-Data-START## Assembly Date :: APR-2016 Assembly Method :: AllPaths LG v. 44620; Atlas Link v. 1.0; Atlas GapFill v. 2.2; redundans v. 0.12c Assembly Name :: Bger_2.0 Expected Final Version :: no Genome Coverage :: 158.5x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..72293 /organism="Blattella germanica" /mol_type="genomic DNA" /strain="American Cyanamid = Orlando Normal" /db_xref="taxon:6973" /sex="male" /tissue_type="whole body" /note="breed: German cockroach" WGS JPZV02000001-JPZV02072293 WGS_SCAFLD KZ614359-KZ622731 // LOCUS AZLD02000000 88007 rc DNA linear INV 19-DEC-2017 DEFINITION Pachypsylla venusta isolate PVEN.00, whole genome shotgun sequencing project. ACCESSION AZLD00000000 VERSION AZLD00000000.2 DBLINK BioProject: PRJNA167476 BioSample: SAMN02209966 KEYWORDS WGS. SOURCE Pachypsylla venusta (hackberry petiole gall psyllid) ORGANISM Pachypsylla venusta Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha; Psylloidea; Aphalaridae; Pachypsylla. REFERENCE 1 (bases 1 to 88007) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hernandez,B., Skinner,E., Javaid,M., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Hughes,D., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Pachypsylla venusta Genome sequencing and assembly JOURNAL Unpublished REFERENCE 2 (bases 1 to 88007) AUTHORS Qu,J., Richards,S., Murali,S.C., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Downs,B., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R.D., Hernandez,B., Javaid,M., Jayaseelan,J.C., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Ongeri,F., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (11-DEC-2013) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA REFERENCE 3 (bases 1 to 88007) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hughes,D., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Osuji,N., Pu,L.-L., Puazo,M., Skinner,E., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (23-OCT-2017) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA COMMENT On Dec 18, 2017 this sequence version replaced AZLD00000000.1. The Pachypsylla venusta whole genome shotgun (WGS) project has the project accession AZLD00000000. This version of the project (02) has the accession number AZLD02000000, and consists of sequences AZLD02000001-AZLD02088007. ##Genome-Assembly-Data-START## Assembly Date :: APR-2016 Assembly Method :: AllPaths LG v. 44620; ATLAS-link v. 1.0; ATLAS-gapfill v. 2.2; redundans v. 0.12c Assembly Name :: Pven_2.0 Expected Final Version :: no Genome Coverage :: 181.4x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..88007 /organism="Pachypsylla venusta" /mol_type="genomic DNA" /isolate="PVEN.00" /isolation_source="nymphs collected from hackberry trees and then stored alive at 4 C until DNA/RNA extraction" /host="hackberry tree" /db_xref="taxon:38123" /sex="pooled males and females" /dev_stage="nymph" /country="USA: Tucson, AZ" /collection_date="21-Nov-2011" /note="from mixed male and female nymphs" WGS AZLD02000001-AZLD02088007 WGS_SCAFLD KZ545295-KZ555989 // LOCUS JHUJ02000000 11856 rc DNA linear INV 18-DEC-2017 DEFINITION Lucilia cuprina strain LS, whole genome shotgun sequencing project. ACCESSION JHUJ00000000 VERSION JHUJ00000000.2 DBLINK BioProject: PRJNA203545 BioSample: SAMN02422564 KEYWORDS WGS. SOURCE Lucilia cuprina (Australian sheep blowfly) ORGANISM Lucilia cuprina Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Oestroidea; Calliphoridae; Luciliinae; Lucilia. REFERENCE 1 (bases 1 to 11856) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hernandez,B., Skinner,E., Javaid,M., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Hughes,D., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Lucilia cuprina strain:LS Genome sequencing and assembly JOURNAL Unpublished REFERENCE 2 (bases 1 to 11856) AUTHORS Murali,S.C., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Downs,B., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R.D., Hernandez,B., Javaid,M., Jayaseelan,J.C., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Ongeri,F., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Richards,S., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (03-APR-2014) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA REFERENCE 3 (bases 1 to 11856) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hughes,D., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Osuji,N., Pu,L.-L., Puazo,M., Skinner,E., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (29-NOV-2017) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA COMMENT On Dec 15, 2017 this sequence version replaced JHUJ00000000.1. The Lucilia cuprina whole genome shotgun (WGS) project has the project accession JHUJ00000000. This version of the project (02) has the accession number JHUJ02000000, and consists of sequences JHUJ02000001-JHUJ02011856. ##Genome-Assembly-Data-START## Assembly Date :: APR-2016 Assembly Method :: AllPaths LG v. 44620; Atlas Link v. 1.0; Atlas GapFill v. 2.2; redundans v. 0.12c Assembly Name :: Lcup_2.0 Expected Final Version :: no Genome Coverage :: 158.3x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..11856 /organism="Lucilia cuprina" /mol_type="genomic DNA" /strain="LS" /db_xref="taxon:7375" /sex="female" /dev_stage="adult" /country="Australia: Canberra" /collection_date="1956" /note="dieldrin susceptible and red eyed with no history of exposure to pesticides" WGS JHUJ02000001-JHUJ02011856 WGS_SCAFLD KZ542990-KZ545083 // LOCUS JARR02000000 1475 rc DNA linear INV 18-DEC-2017 DEFINITION Trichogramma pretiosum strain Unisexual culture from Peru, whole genome shotgun sequencing project. ACCESSION JARR00000000 VERSION JARR00000000.2 DBLINK BioProject: PRJNA168121 BioSample: SAMN02439301 KEYWORDS WGS. SOURCE Trichogramma pretiosum ORGANISM Trichogramma pretiosum Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Parasitoida; Chalcidoidea; Trichogrammatidae; Trichogramma. REFERENCE 1 (bases 1 to 1475) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hernandez,B., Skinner,E., Javaid,M., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Hughes,D., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Genome sequencing of Trichogramma pretiosum and its endosymbiont JOURNAL Unpublished REFERENCE 2 (bases 1 to 1475) AUTHORS Qu,J., Murali,S.C., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Downs,B., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R.D., Hernandez,B., Javaid,M., Jayaseelan,J.C., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Ongeri,F., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Richards,S., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (16-JAN-2014) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA REFERENCE 3 (bases 1 to 1475) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hughes,D., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Osuji,N., Pu,L.-L., Puazo,M., Skinner,E., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (23-OCT-2017) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA COMMENT On Dec 15, 2017 this sequence version replaced JARR00000000.1. The Trichogramma pretiosum whole genome shotgun (WGS) project has the project accession JARR00000000. This version of the project (02) has the accession number JARR02000000, and consists of sequences JARR02000001-JARR02001475. ##Genome-Assembly-Data-START## Assembly Date :: APR-2016 Assembly Method :: AllPaths v. 44620; Atlas Link v. 1.0; Atlas GapFill v. 2.2; redundans v. 0.12c Assembly Name :: Tpre_2.0 Expected Final Version :: no Genome Coverage :: 232.7x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1475 /organism="Trichogramma pretiosum" /mol_type="genomic DNA" /strain="Unisexual culture from Peru" /isolation_source="collection maintained in commercial insectary since 1966" /host="Alabama argillacea" /db_xref="taxon:7493" /sex="female" /country="Peru: Puira Valley" WGS JARR02000001-JARR02001475 WGS_SCAFLD KZ542805-KZ542989 // LOCUS AZGP02000000 2037 rc DNA linear INV 18-DEC-2017 DEFINITION Orussus abietinus isolate OABI.00-Male, whole genome shotgun sequencing project. ACCESSION AZGP00000000 VERSION AZGP00000000.2 DBLINK BioProject: PRJNA171756 BioSample: SAMN02225314 KEYWORDS WGS. SOURCE Orussus abietinus ORGANISM Orussus abietinus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Orussoidea; Orussidae; Orussus. REFERENCE 1 (bases 1 to 2037) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hernandez,B., Skinner,E., Javaid,M., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Hughes,D., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Orussus abietinus isolate:OABI.00-Male Genome sequencing and assembly JOURNAL Unpublished REFERENCE 2 (bases 1 to 2037) AUTHORS Qu,J., Murali,S.C., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Downs,B., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R.D., Hernandez,B., Javaid,M., Jayaseelan,J.C., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Ongeri,F., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Richards,S., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (03-DEC-2013) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA REFERENCE 3 (bases 1 to 2037) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hughes,D., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Osuji,N., Pu,L.-L., Puazo,M., Skinner,E., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (19-OCT-2017) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA COMMENT On Dec 15, 2017 this sequence version replaced AZGP00000000.1. The Orussus abietinus whole genome shotgun (WGS) project has the project accession AZGP00000000. This version of the project (02) has the accession number AZGP02000000, and consists of sequences AZGP02000001-AZGP02002037. ##Genome-Assembly-Data-START## Assembly Date :: APR-2016 Assembly Method :: AllPaths v. 35218; ATLAS-link v. 1.0; ATLAS-gapfill v. 2.2; redundans v. 0.12c Assembly Name :: Oabi_2.0 Expected Final Version :: no Genome Coverage :: 467.1x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..2037 /organism="Orussus abietinus" /mol_type="genomic DNA" /isolate="OABI.00-Male" /isolation_source="haploid male collected from an old tree in a forest" /db_xref="taxon:222816" /sex="male" /tissue_type="whole organism" /dev_stage="adult" /country="Germany: Gross-Gerau, Hessen" /lat_lon="49.960617 N 8.542233 E" /altitude="103 m" /collection_date="23-Apr-2011" WGS AZGP02000001-AZGP02002037 WGS_SCAFLD KZ545084-KZ545294 // LOCUS JYFJ02000000 23922 rc DNA linear INV 18-DEC-2017 DEFINITION Catajapyx aquilonaris, whole genome shotgun sequencing project. ACCESSION JYFJ00000000 VERSION JYFJ00000000.2 DBLINK BioProject: PRJNA203301 BioSample: SAMN02646748 KEYWORDS WGS. SOURCE Catajapyx aquilonaris ORGANISM Catajapyx aquilonaris Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Diplura; Dicellurata; Japygoidea; Japygidae; Japyginae; Catajapyx. REFERENCE 1 (bases 1 to 23922) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hernandez,B., Skinner,E., Javaid,M., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Hughes,D., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Catajapyx aquilonaris Genome sequencing JOURNAL Unpublished REFERENCE 2 (bases 1 to 23922) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hughes,D., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Osuji,N., Pu,L.-L., Puazo,M., Skinner,E., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (12-FEB-2015) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA REFERENCE 3 (bases 1 to 23922) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hughes,D., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Osuji,N., Pu,L.-L., Puazo,M., Skinner,E., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (17-OCT-2017) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA COMMENT On Dec 15, 2017 this sequence version replaced JYFJ00000000.1. The Catajapyx aquilonaris whole genome shotgun (WGS) project has the project accession JYFJ00000000. This version of the project (02) has the accession number JYFJ02000000, and consists of sequences JYFJ02000001-JYFJ02023922. ##Genome-Assembly-Data-START## Assembly Date :: APR-2016 Assembly Method :: Platanus Genome Assembler v. 1.2.1; redundans v. 0.12c Assembly Name :: Caqu_2.0 Expected Final Version :: no Genome Coverage :: 100.0x Sequencing Technology :: Illumina MiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..23922 /organism="Catajapyx aquilonaris" /mol_type="genomic DNA" /isolation_source="samples collected directly from the wild" /specimen_voucher="ZFMK:TIS-24948" /db_xref="taxon:438503" /sex="female" /tissue_type="Whole organism" /dev_stage="adult" /country="Austria: Vienna, Arztgasse" WGS JYFJ02000001-JYFJ02023922 WGS_SCAFLD KZ537955-KZ540341 // LOCUS AXZI02000000 35614 rc DNA linear INV 13-DEC-2017 DEFINITION Centruroides sculpturatus isolate CEXI.00-Female, whole genome shotgun sequencing project. ACCESSION AXZI00000000 VERSION AXZI00000000.2 DBLINK BioProject: PRJNA168116 BioSample: SAMN02617800 KEYWORDS WGS. SOURCE Centruroides sculpturatus (bark scorpion) ORGANISM Centruroides sculpturatus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Scorpiones; Buthida; Buthoidea; Buthidae; Centruroides. REFERENCE 1 (bases 1 to 35614) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hernandez,B., Skinner,E., Javaid,M., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Hughes,D., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Centruroides sculpturatus isolate:CEXI.00-Female Genome sequencing and assembly JOURNAL Unpublished REFERENCE 2 (bases 1 to 35614) AUTHORS Qu,J., Murali,S.C., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Hernandez,B., Javaid,M., Jayaseelan,J.C., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Ongeri,F., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Gnanaolivu,R.D., Richards,S., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (04-FEB-2014) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA REFERENCE 3 (bases 1 to 35614) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hughes,D., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Osuji,N., Pu,L.-L., Puazo,M., Skinner,E., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (04-OCT-2017) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA COMMENT On Dec 12, 2017 this sequence version replaced AXZI00000000.1. The Centruroides sculpturatus whole genome shotgun (WGS) project has the project accession AXZI00000000. This version of the project (02) has the accession number AXZI02000000, and consists of sequences AXZI02000001-AXZI02035614. ##Genome-Assembly-Data-START## Assembly Date :: APR-2016 Assembly Method :: AllPaths v. 35218; ATLAS-link v. 1.0; ATLAS-gapfill v. 2.2; redundans v. 0.12c Assembly Name :: Cexi_2.0 Expected Final Version :: no Genome Coverage :: 181.1x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..35614 /organism="Centruroides sculpturatus" /mol_type="genomic DNA" /isolate="CEXI.00-Female" /db_xref="taxon:218467" /sex="female" /tissue_type="whole organism" /collection_date="01-Feb-2012" /note="non-domesticated species of scorpion" WGS AXZI02000001-AXZI02035614 WGS_SCAFLD KZ493872-KZ497562 // LOCUS JBOX02000000 31515 rc DNA linear INV 13-DEC-2017 DEFINITION Copidosoma floridanum isolate CFLO.00-Male, whole genome shotgun sequencing project. ACCESSION JBOX00000000 VERSION JBOX00000000.2 DBLINK BioProject: PRJNA171748 BioSample: SAMN02265491 KEYWORDS WGS. SOURCE Copidosoma floridanum ORGANISM Copidosoma floridanum Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Parasitoida; Chalcidoidea; Encyrtidae; Encyrtinae; Copidosoma. REFERENCE 1 (bases 1 to 31515) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hernandez,B., Skinner,E., Javaid,M., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Hughes,D., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Copidosoma floridanum Genome sequencing JOURNAL Unpublished REFERENCE 2 (bases 1 to 31515) AUTHORS Qu,J., Murali,S.C., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Downs,B., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R.D., Hernandez,B., Javaid,M., Jayaseelan,J.C., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Ongeri,F., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Richards,S., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (29-JAN-2014) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA REFERENCE 3 (bases 1 to 31515) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hughes,D., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Osuji,N., Pu,L.-L., Puazo,M., Skinner,E., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (17-OCT-2017) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA COMMENT On Dec 12, 2017 this sequence version replaced JBOX00000000.1. The Copidosoma floridanum whole genome shotgun (WGS) project has the project accession JBOX00000000. This version of the project (02) has the accession number JBOX02000000, and consists of sequences JBOX02000001-JBOX02031515. ##Genome-Assembly-Data-START## Assembly Date :: APR-2016 Assembly Method :: AllPaths LG v. 35218; Atlas Link v. 1.0; Atlas GapFill v. 2.2; redundans v. 0.12c Assembly Name :: Cflo_2.0 Expected Final Version :: no Genome Coverage :: 139.0x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..31515 /organism="Copidosoma floridanum" /mol_type="genomic DNA" /isolate="CFLO.00-Male" /isolation_source="Michael Strand lab raised" /db_xref="taxon:29053" /sex="male" /country="USA: South Carolina" /collection_date="Sep-1985" WGS JBOX02000001-JBOX02031515 WGS_SCAFLD KZ491317-KZ493871 // LOCUS AQHT02000000 26748 rc DNA linear INV 13-DEC-2017 DEFINITION Anoplophora glabripennis isolate ALB-LARVAE, whole genome shotgun sequencing project. ACCESSION AQHT00000000 VERSION AQHT00000000.2 DBLINK BioProject: PRJNA167479 BioSample: SAMN02222868 KEYWORDS WGS. SOURCE Anoplophora glabripennis (Asian longhorned beetle) ORGANISM Anoplophora glabripennis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Chrysomeloidea; Cerambycidae; Lamiinae; Lamiini; Anoplophora. REFERENCE 1 (bases 1 to 26748) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hernandez,B., Skinner,E., Javaid,M., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Hughes,D., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Anoplophora glabripennis RefSeq Genome sequencing JOURNAL Unpublished REFERENCE 2 (bases 1 to 26748) AUTHORS Qu,J., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Downs,B., Dugan-Rocha,S., Elkadiri,S., Hernandez,B., Javaid,M., Jayaseelan,J.C., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Ongeri,F., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (08-MAR-2013) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA REFERENCE 3 (bases 1 to 26748) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hughes,D., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Osuji,N., Pu,L.-L., Puazo,M., Skinner,E., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (05-OCT-2017) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA COMMENT On Dec 12, 2017 this sequence version replaced AQHT00000000.1. The Anoplophora glabripennis whole genome shotgun (WGS) project has the project accession AQHT00000000. This version of the project (02) has the accession number AQHT02000000, and consists of sequences AQHT02000001-AQHT02026748. ##Genome-Assembly-Data-START## Assembly Date :: APR-2016 Assembly Method :: AllPaths v. 35218; ATLAS-link v. 1.0; ATLAS-gapfill v. 2.2; redundans v. 0.12c Assembly Name :: Agla_2.0 Expected Final Version :: no Genome Coverage :: 121.0x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..26748 /organism="Anoplophora glabripennis" /mol_type="genomic DNA" /isolate="ALB-LARVAE" /isolation_source="'mixed' research colony (originating from wild-collected US specimens from several localities)" /db_xref="taxon:217634" /country="USA: Otis Air National Guard Base, MA" /collection_date="Aug-2011" WGS AQHT02000001-AQHT02026748 WGS_SCAFLD KZ486667-KZ491316 // LOCUS JHUN02000000 2901 rc DNA linear INV 13-DEC-2017 DEFINITION Cimex lectularius strain Harlan isolate CLEC.00, whole genome shotgun sequencing project. ACCESSION JHUN00000000 VERSION JHUN00000000.2 DBLINK BioProject: PRJNA167477 BioSample: SAMN02649412 KEYWORDS WGS. SOURCE Cimex lectularius (bed bug) ORGANISM Cimex lectularius Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera; Panheteroptera; Cimicomorpha; Cimicidae; Cimex. REFERENCE 1 (bases 1 to 2901) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hernandez,B., Skinner,E., Javaid,M., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Hughes,D., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Cimex lectularius Genome sequencing JOURNAL Unpublished REFERENCE 2 (bases 1 to 2901) AUTHORS Qu,J., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Downs,B., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hernandez,B., Javaid,M., Jayaseelan,J.C., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Ongeri,F., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (04-APR-2014) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA REFERENCE 3 (bases 1 to 2901) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hughes,D., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Osuji,N., Pu,L.-L., Puazo,M., Skinner,E., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (17-OCT-2017) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA COMMENT On Dec 12, 2017 this sequence version replaced JHUN00000000.1. The Cimex lectularius whole genome shotgun (WGS) project has the project accession JHUN00000000. This version of the project (02) has the accession number JHUN02000000, and consists of sequences JHUN02000001-JHUN02002901. ##Genome-Assembly-Data-START## Assembly Date :: APR-2016 Assembly Method :: AllPaths LG v. 35218; Atlas Link v. 1.0; Atlas GapFill v. 2.2; redundans v. 0.12c Assembly Name :: Clec_2.0 Expected Final Version :: no Genome Coverage :: 163.4x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..2901 /organism="Cimex lectularius" /mol_type="genomic DNA" /strain="Harlan" /isolate="CLEC.00" /isolation_source="isolated after 5 generations of single pair matings of specimens derived from the Fort Dix colony established and maintained in culture in Harold Harlan's lab since 1973" /db_xref="taxon:79782" /sex="male" /tissue_type="Whole organism" /country="USA: New Jersey" WGS JHUN02000001-JHUN02002901 WGS_SCAFLD KZ486247-KZ486666 // LOCUS AOHK02000000 3294 rc DNA linear INV 06-NOV-2017 DEFINITION Ceratitis capitata, whole genome shotgun sequencing project. ACCESSION AOHK00000000 VERSION AOHK00000000.2 DBLINK BioProject: PRJNA168120 BioSample: SAMN02953830 KEYWORDS WGS. SOURCE Ceratitis capitata (Mediterranean fruit fly) ORGANISM Ceratitis capitata Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Tephritoidea; Tephritidae; Ceratitis; Ceratitis. REFERENCE 1 (bases 1 to 3294) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hernandez,B., Skinner,E., Javaid,M., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Hughes,D., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Ceratitis capitata Genome sequencing and assembly JOURNAL Unpublished REFERENCE 2 (bases 1 to 3294) AUTHORS Qu,J., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Hernandez,B., Javaid,M., Jayaseelan,J.C., Kalra,D., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Ongeri,F., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (18-JAN-2013) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA REFERENCE 3 (bases 1 to 3294) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hughes,D., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Osuji,N., Pu,L.-L., Puazo,M., Skinner,E., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (25-OCT-2017) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA COMMENT On Nov 6, 2017 this sequence version replaced AOHK00000000.1. The Ceratitis capitata whole genome shotgun (WGS) project has the project accession AOHK00000000. This version of the project (02) has the accession number AOHK02000000, and consists of sequences AOHK02000001-AOHK02003294. ##Genome-Assembly-Data-START## Assembly Date :: APR-2016 Assembly Method :: AllPaths v. 35218; ATLAS-link v. 1.0; ATLAS-gapfill v. 2.2; redundans v. 0.12c Assembly Name :: Ccap_2.0 Expected Final Version :: no Genome Coverage :: 152.5x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..3294 /organism="Ceratitis capitata" /mol_type="genomic DNA" /db_xref="taxon:7213" WGS AOHK02000001-AOHK02003294 WGS_SCAFLD KZ344498-KZ344984 // LOCUS JDSM02000000 114516 rc DNA linear INV 03-NOV-2017 DEFINITION Limnephilus lunatus isolate LLUN.00-Female, whole genome shotgun sequencing project. ACCESSION JDSM00000000 VERSION JDSM00000000.2 DBLINK BioProject: PRJNA203303 BioSample: SAMN02211182 KEYWORDS WGS. SOURCE Limnephilus lunatus ORGANISM Limnephilus lunatus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Trichoptera; Integripalpia; Plenitentoria; Limnephiloidea; Limnephilidae; Limnephilinae; Limnephilini; Limnephilus. REFERENCE 1 (bases 1 to 114516) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hernandez,B., Skinner,E., Javaid,M., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Hughes,D., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Limnephilus lunatus Genome sequencing and assembly JOURNAL Unpublished REFERENCE 2 (bases 1 to 114516) AUTHORS Qu,J., Murali,S.C., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Downs,B., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R.D., Hernandez,B., Javaid,M., Jayaseelan,J.C., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Ongeri,F., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Richards,S., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (03-FEB-2014) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA REFERENCE 3 (bases 1 to 114516) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hughes,D., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Osuji,N., Pu,L.-L., Puazo,M., Skinner,E., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (26-OCT-2017) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA COMMENT On Oct 31, 2017 this sequence version replaced JDSM00000000.1. The Limnephilus lunatus whole genome shotgun (WGS) project has the project accession JDSM00000000. This version of the project (02) has the accession number JDSM02000000, and consists of sequences JDSM02000001-JDSM02114516. ##Genome-Assembly-Data-START## Assembly Date :: APR-2016 Assembly Method :: AllPaths LG v. 35218; Atlas Link v. 1.0; Atlas GapFill v. 2.2; redundans v. 0.12c Assembly Name :: Llun_2.0 Expected Final Version :: no Genome Coverage :: 80.1x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..114516 /organism="Limnephilus lunatus" /mol_type="genomic DNA" /isolate="LLUN.00-Female" /isolation_source="sampled in the wild" /db_xref="taxon:1218281" /sex="female" /country="Germany: Sachsen-Anhalt, Tangerhutte" /lat_lon="52.4325 N 11.8214 E" /collection_date="03-Oct-2011" WGS JDSM02000001-JDSM02114516 WGS_SCAFLD KZ319399-KZ344047 // LOCUS AYNB02000000 45556 rc DNA linear INV 02-NOV-2017 DEFINITION Leptinotarsa decemlineata strain Imidocloprid resistant, whole genome shotgun sequencing project. ACCESSION AYNB00000000 VERSION AYNB00000000.2 DBLINK BioProject: PRJNA171749 BioSample: SAMN02376991 KEYWORDS WGS. SOURCE Leptinotarsa decemlineata (Colorado potato beetle) ORGANISM Leptinotarsa decemlineata Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Chrysomeloidea; Chrysomelidae; Chrysomelinae; Doryphorini; Leptinotarsa. REFERENCE 1 (bases 1 to 45556) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hernandez,B., Skinner,E., Javaid,M., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Hughes,D., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Leptinotarsa decemlineata Genome sequencing and assembly JOURNAL Unpublished REFERENCE 2 (bases 1 to 45556) AUTHORS Qu,J., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Downs,B., Dugan-Rocha,S., Elkadiri,S., Hernandez,B., Javaid,M., Jayaseelan,J.C., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Ongeri,F., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (08-OCT-2013) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA REFERENCE 3 (bases 1 to 45556) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hughes,D., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Osuji,N., Pu,L.-L., Puazo,M., Skinner,E., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (25-OCT-2017) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA COMMENT On Oct 31, 2017 this sequence version replaced AYNB00000000.1. The Leptinotarsa decemlineata whole genome shotgun (WGS) project has the project accession AYNB00000000. This version of the project (02) has the accession number AYNB02000000, and consists of sequences AYNB02000001-AYNB02045556. ##Genome-Assembly-Data-START## Assembly Date :: APR-2016 Assembly Method :: AllPaths v. 35218; ATLAS-link v. 1.0; ATLAS-gapfill v. 2.0; redundans v. 0.12c Assembly Name :: Ldec_2.0 Expected Final Version :: no Genome Coverage :: 52.3x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..45556 /organism="Leptinotarsa decemlineata" /mol_type="genomic DNA" /strain="Imidocloprid resistant" /db_xref="taxon:7539" /sex="female" /country="USA: Long Island, New York" /collection_date="2010" WGS AYNB02000001-AYNB02045556 WGS_SCAFLD KZ312455-KZ319281 // LOCUS JHOM02000000 10620 rc DNA linear INV 02-NOV-2017 DEFINITION Onthophagus taurus breed undomesticated insect, whole genome shotgun sequencing project. ACCESSION JHOM00000000 VERSION JHOM00000000.2 DBLINK BioProject: PRJNA167478 BioSample: SAMN02628949 KEYWORDS WGS. SOURCE Onthophagus taurus ORGANISM Onthophagus taurus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Scarabaeiformia; Scarabaeidae; Scarabaeinae; Scarabaeinae incertae sedis; Onthophagus. REFERENCE 1 (bases 1 to 10620) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hernandez,B., Skinner,E., Javaid,M., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Hughes,D., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Onthophagus taurus Genome sequencing and assembly JOURNAL Unpublished REFERENCE 2 (bases 1 to 10620) AUTHORS Murali,S.C., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R.D., Hernandez,B., Javaid,M., Jayaseelan,J.C., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Ongeri,F., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Richards,S., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (28-MAR-2014) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA REFERENCE 3 (bases 1 to 10620) AUTHORS Murali,S., Richards,S., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Gnanaolivu,R., Hughes,D., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Osuji,N., Pu,L.-L., Puazo,M., Skinner,E., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (25-OCT-2017) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA COMMENT On Oct 31, 2017 this sequence version replaced JHOM00000000.1. The Onthophagus taurus whole genome shotgun (WGS) project has the project accession JHOM00000000. This version of the project (02) has the accession number JHOM02000000, and consists of sequences JHOM02000001-JHOM02010620. ##Genome-Assembly-Data-START## Assembly Date :: APR-2016 Assembly Method :: AllPaths LG v. 44620; Atlas Link v. 1.0; Atlas GapFill v. 2.2; redundans v. 0.12c Assembly Name :: Otau_2.0 Expected Final Version :: no Genome Coverage :: 86.0x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..10620 /organism="Onthophagus taurus" /mol_type="genomic DNA" /isolation_source="collected directly from the wild several months prior to extraction" /db_xref="taxon:166361" /sex="pooled males and females" /tissue_type="whole body" /dev_stage="adult" /country="USA: near Chapel Hill, North Carolina" /collection_date="09-Jan-2013" /collected_by="Armin Moczek" /note="breed: undomesticated insect" WGS JHOM02000001-JHOM02010620 WGS_SCAFLD KZ305988-KZ308112 // LOCUS LYUA01000000 8896 rc DNA linear INV 14-APR-2017 DEFINITION Calopteryx splendens strain PI-2016, whole genome shotgun sequencing project. ACCESSION LYUA00000000 VERSION LYUA00000000.1 DBLINK BioProject: PRJNA315816 BioSample: SAMN04994746 KEYWORDS WGS. SOURCE Calopteryx splendens (banded demoiselle) ORGANISM Calopteryx splendens Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Palaeoptera; Odonata; Zygoptera; Calopterygidae; Calopteryx. REFERENCE 1 (bases 1 to 8896) AUTHORS Ioannidis,P., Simao,F.A., Waterhouse,R.M., Manni,M., Seppey,M., Robertson,H.M., Misof,B., Niehuis,O. and Zdobnov,E.M. TITLE Genomic Features of the Damselfly Calopteryx splendens Representing a Sister Clade to Most Insect Orders JOURNAL Genome Biol Evol 9 (2), 415-430 (2017) PUBMED 28137743 REFERENCE 2 (bases 1 to 8896) AUTHORS Ioannidis,P., Simao Neto,F., Waterhouse,R.M., Manni,M., Seppey,M., Misof,B., Niehuis,O. and Zdobnov,E.M. TITLE Direct Submission JOURNAL Submitted (28-MAY-2016) Department of Genetic Medicine and Development, University of Geneva, Rue Michel-Servet 1, Geneva, N/A 1211, Switzerland COMMENT The Calopteryx splendens whole genome shotgun (WGS) project has the project accession LYUA00000000. This version of the project (01) has the accession number LYUA01000000, and consists of sequences LYUA01000001-LYUA01008896. ##Genome-Assembly-Data-START## Assembly Date :: 28-APR-2015 Assembly Method :: SparseAssembler v. Apr-2015; SSPACE v. Apr-2015 Assembly Name :: Calsple1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 65.0x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..8896 /organism="Calopteryx splendens" /mol_type="genomic DNA" /strain="PI-2016" /db_xref="taxon:52612" /sex="female" /tissue_type="legs; head" /dev_stage="adult" /country="Germany: Freckenfeld" /lat_lon="49.056928 N 8.139490 E" /collection_date="Jun-2013" WGS LYUA01000001-LYUA01008896 // LOCUS LKEQ01000000 9 rc DNA linear BCT 12-JUL-2016 DEFINITION Wolbachia endosymbiont of Trichogramma pretiosum strain wTpre, whole genome shotgun sequencing project. ACCESSION LKEQ00000000 VERSION LKEQ00000000.1 DBLINK BioProject: PRJNA168121 BioSample: SAMN04092459 KEYWORDS WGS. SOURCE Wolbachia endosymbiont of Trichogramma pretiosum ORGANISM Wolbachia endosymbiont of Trichogramma pretiosum Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Wolbachieae; Wolbachia; unclassified Wolbachia. REFERENCE 1 (bases 1 to 9) AUTHORS Lindsey,A.R., Werren,J.H., Richards,S. and Stouthamer,R. TITLE Comparative genomics across Wolbachia reveals extensive gene truncations in the parthenogenesis-inducing strain wTpre JOURNAL Unpublished REFERENCE 2 (bases 1 to 9) AUTHORS Lindsey,A.R., Werren,J.H., Richards,S. and Stouthamer,R. TITLE Direct Submission JOURNAL Submitted (25-SEP-2015) Department of Entomology, University of California Riverside, 900 University Ave, Riverside, CA 92521, USA REFERENCE 3 (bases 1 to 9) AUTHORS Lindsey,A.R., Werren,J.H., Richards,S. and Stouthamer,R. TITLE Direct Submission JOURNAL Submitted (01-JUN-2016) Department of Entomology, University of California Riverside, 900 University Ave, Riverside, CA 92521, USA COMMENT The Wolbachia endosymbiont of Trichogramma pretiosum whole genome shotgun (WGS) project has the project accession LKEQ00000000. This version of the project (01) has the accession number LKEQ01000000, and consists of sequences LKEQ01000001-LKEQ01000009. Annotation was added to the contigs in July 2016. ##Genome-Assembly-Data-START## Assembly Date :: 24-MAR-2014 Assembly Method :: AllPaths v. 44620; Atlas Link v. 1.0; Atlas GapFill v. 2.2 Assembly Name :: wTPRE_1.0 Genome Coverage :: 35.6x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..9 /organism="Wolbachia endosymbiont of Trichogramma pretiosum" /mol_type="genomic DNA" /strain="wTpre" /host="Trichogramma pretiosum" /db_xref="taxon:125593" /country="Peru: Puira Valley" /collection_date="2012" WGS LKEQ01000001-LKEQ01000009 WGS_SCAFLD CM003641 // LOCUS AAJJ02000000 7058 rc DNA linear INV 10-MAR-2016 DEFINITION Tribolium castaneum strain Georgia GA2, whole genome shotgun sequencing project. ACCESSION AAJJ00000000 VERSION AAJJ00000000.2 DBLINK BioProject: PRJNA12540 BioSample: SAMN02953634 KEYWORDS WGS. SOURCE Tribolium castaneum (red flour beetle) ORGANISM Tribolium castaneum Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium. REFERENCE 1 (bases 1 to 7058) AUTHORS Richards,S., Gibbs,R.A., Weinstock,G.M., Brown,S.J., Denell,R., Beeman,R.W., Gibbs,R., Beeman,R.W., Brown,S.J., Bucher,G., Friedrich,M., Grimmelikhuijzen,C.J., Klingler,M., Lorenzen,M., Richards,S., Roth,S., Schroder,R., Tautz,D., Zdobnov,E.M., Muzny,D., Gibbs,R.A., Weinstock,G.M., Attaway,T., Bell,S., Buhay,C.J., Chandrabose,M.N., Chavez,D., Clerk-Blankenburg,K.P., Cree,A., Dao,M., Davis,C., Chacko,J., Dinh,H., Dugan-Rocha,S., Fowler,G., Garner,T.T., Garnes,J., Gnirke,A., Hawes,A., Hernandez,J., Hines,S., Holder,M., Hume,J., Jhangiani,S.N., Joshi,V., Khan,Z.M., Jackson,L., Kovar,C., Kowis,A., Lee,S., Lewis,L.R., Margolis,J., Morgan,M., Nazareth,L.V., Nguyen,N., Okwuonu,G., Parker,D., Richards,S., Ruiz,S.J., Santibanez,J., Savard,J., Scherer,S.E., Schneider,B., Sodergren,E., Tautz,D., Vattahil,S., Villasana,D., White,C.S., Wright,R., Park,Y., Beeman,R.W., Lord,J., Oppert,B., Lorenzen,M., Brown,S., Wang,L., Savard,J., Tautz,D., Richards,S., Weinstock,G., Gibbs,R.A., Liu,Y., Worley,K., Weinstock,G., Elsik,C.G., Reese,J.T., Elhaik,E., Landan,G., Graur,D., Arensburger,P., Atkinson,P., Beeman,R.W., Beidler,J., Brown,S.J., Demuth,J.P., Drury,D.W., Du,Y.Z., Fujiwara,H., Lorenzen,M., Maselli,V., Osanai,M., Park,Y., Robertson,H.M., Tu,Z., Wang,J.J., Wang,S., Richards,S., Song,H., Zhang,L., Sodergren,E., Werner,D., Stanke,M., Morgenstern,B., Solovyev,V., Kosarev,P., Brown,G., Chen,H.C., Ermolaeva,O., Hlavina,W., Kapustin,Y., Kiryutin,B., Kitts,P., Maglott,D., Pruitt,K., Sapojnikov,V., Souvorov,A., Mackey,A.J., Waterhouse,R.M., Wyder,S., Zdobnov,E.M., Zdobnov,E.M., Wyder,S., Kriventseva,E.V., Kadowaki,T., Bork,P., Aranda,M., Bao,R., Beermann,A., Berns,N., Bolognesi,R., Bonneton,F., Bopp,D., Brown,S.J., Bucher,G., Butts,T., Chaumot,A., Denell,R.E., Ferrier,D.E., Friedrich,M., Gordon,C.M., Jindra,M., Klingler,M., Lan,Q., Lattorff,H.M., Laudet,V., von Levetsow,C., Liu,Z., Lutz,R., Lynch,J.A., da Fonseca,R.N., Posnien,N., Reuter,R., Roth,S., Savard,J., Schinko,J.B., Schmitt,C., Schoppmeier,M., Schroder,R., Shippy,T.D., Simonnet,F., Marques-Souza,H., Tautz,D., Tomoyasu,Y., Trauner,J., Van der Zee,M., Vervoort,M., Wittkopp,N., Wimmer,E.A., Yang,X., Jones,A.K., Sattelle,D.B., Ebert,P.R., Nelson,D., Scott,J.G., Beeman,R.W., Muthukrishnan,S., Kramer,K.J., Arakane,Y., Beeman,R.W., Zhu,Q., Hogenkamp,D., Dixit,R., Oppert,B., Jiang,H., Zou,Z., Marshall,J., Elpidina,E., Vinokurov,K., Oppert,C., Zou,Z., Evans,J., Lu,Z., Zhao,P., Sumathipala,N., Altincicek,B., Vilcinskas,A., Williams,M., Hultmark,D., Hetru,C., Jiang,H., Grimmelikhuijzen,C.J., Hauser,F., Cazzamali,G., Williamson,M., Park,Y., Li,B., Tanaka,Y., Predel,R., Neupert,S., Schachtner,J., Verleyen,P., Raible,F., Bork,P., Friedrich,M., Walden,K.K., Robertson,H.M., Angeli,S., Foret,S., Bucher,G., Schuetz,S., Maleszka,R., Wimmer,E.A., Beeman,R.W., Lorenzen,M., Tomoyasu,Y., Miller,S.C., Grossmann,D. and Bucher,G. CONSRTM Tribolium Genome Sequencing Consortium TITLE The genome of the model beetle and pest Tribolium castaneum JOURNAL Nature 452 (7190), 949-955 (2008) PUBMED 18362917 REFERENCE 2 (bases 1 to 7058) AUTHORS Kim,H.S., Murphy,T., Xia,J., Caragea,D., Park,Y., Beeman,R.W., Lorenzen,M.D., Butcher,S., Manak,J.R. and Brown,S.J. TITLE BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum JOURNAL Nucleic Acids Res. 38 (DATABASE ISSUE), D437-D442 (2010) PUBMED 19820115 REFERENCE 3 (bases 1 to 7058) AUTHORS Shelton,J.M., Herndon,N., Coleman,C., Lu,N. and Brown,S.J. TITLE Tools and pipelines for BioNano data: molecule assembly pipeline and FASTA super scaffolding tool JOURNAL Unpublished REFERENCE 4 (bases 1 to 7058) AUTHORS Liu,Y., Adams,C., Agbai,O. II, Allen,C., Alsbrooks,S., Archer,P., Arredondo,H., Bandaranaike,D., Bangura,L., Beltran,B., Beraducci,A., Biswalo,K., Blyth,P., Buhay,C., Burch,P., Cadoree,I., Canada,A., Cardenas,V., Carter,K., Cavazos,I., Chacko,J., Chahrour,M., Chavez,D., Chen,A., Chen,G., Chen,R., Cheng,M.-T., Chu,J., Clerc,K., Cockrell,R., Coyle,M., Cree,A., Curry,S., Dai,W., Davila,M.L., Davis,C., Davy-Carroll,L., De Anda,C., Delgado,O., Denson,S., Deramo,C., Ding,Y., Dinh,H., Donlin,J., McCauley,S., Dugan-Rocha,S., Dunn,A., Durbin,K., Dziuda,D., Egan,A., Escotto,M., Espinosa,V., Fa,M., Fernandez,S., Fernando,P., Flagg,N., Forbes,L., Fowler,G.J., Fu,Q., Fuh,E., Garcia,A., Garcia,R., Garner,T., Gench,S., Ghose,S., Gill,R., Gonzalez,D., Guevara,W., Holder,M., Haaland,W., Haeberlen,K., Hall,B., Hamid,H., Hamilton,K., Harbes,B., Havlak,P., Hawes,A., Hawkins,E., Hayes,S., Hernandez,J., Hines,S., Hitchens,M., Hogues,M., Hollins,B., Howell,L.T., Hume,J., Imo,K., Jackson,L., Jacob,L., Jiang,H., Johnson,B., Johnson,R., Kelly,S., Keys,T., Khan,Z., King,L., Kovar,C., Kowis,A., Lara,F., Lee,K., Lee,S., LeGall,F.I., Lemon,S., Lewis,L., Li,B., Li,Y., Li,Z., Linnell,M., Liu,W., Liu,Y.-S., Liu,Y., Liyanage,D., London,P., Lopez,J., Lorensuhewa,L., Lozado,R., Madu,R., Maheshwari,M., Mahoney,C., Malloy,K., Mansouri,D., Martinez,E., Mercadao,C., Metzker,M., Minja,E., Morgan,M., Morris,S., Munidasa,M., Nazareth,L., Ngo,D., Nguyen,N., Nott,A., Nwaokelemeh,O., Obregon,M., Ochi-Okorie,C., Odeh,E., Okwuonu,G., Okwuonu,K., Parker,D., Patel,B., Patel,V., Paul,H., Perez,A., Perez,L., Pham,T., Primus,E., Pu,L.-L., Puazo,M., Qin,X., Quinn,A., Quiroz,J., Rabata,D., Rachlin,E., Ren,Y., Rodriguez,F., Rojas,A., Ruiz,S.J., Sana,M., Sanders,W., Santibanez,J., Santos,R., Savery,G., Scherer,S., Shen,H., Shen,Y., Sisson,I., Sodergren,E., Song,X.-Z., Sorelle,R., Svatek,A., Taylor,E., Taylor,T., Thomas,N., Thorn,R., Thornton,R., Trejos,Z., Usmani,K., Vargo,C., Verduzco,D., Villasana,D., Waldron,L., Wang,Q., Wang,S., Warren,J., Wei,X., Wheeler,D., Williams,G., Williams,R., Wright,R., Wu,J., Yakub,S., Yan,K., Yuan,Y., Yu,F., Zhang,J., Zhou,J., Zhang,L., Worley,K.C., Muzny,D., Weinstock,G. and Gibbs,R.A. TITLE Direct Submission JOURNAL Submitted (09-AUG-2005) Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA REFERENCE 5 (bases 1 to 7058) AUTHORS Shelton,J.M., Herndon,N., Coleman,C., Lu,N. and Brown,S.J. TITLE Direct Submission JOURNAL Submitted (12-NOV-2014) K-INBRE Bioinformatics Core, Kansas State University, Manhattan, KS 66506, USA COMMENT On Mar 4, 2016 this sequence version replaced AAJJ00000000.1. The Tribolium castaneum whole genome shotgun (WGS) project has the project accession AAJJ00000000. This version of the project (02) has the accession number AAJJ02000000, and consists of sequences AAJJ02000001-AAJJ02007058. ##Genome-Assembly-Data-START## Assembly Date :: SEP-2014 Assembly Method :: AllPaths v. 2008; ATLAS-LINK v. 2014; GapFiller v. 2014; stitch v. 2014 Assembly Name :: Tcas5.2 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 7.0x Sequencing Technology :: Sanger; Illumina LDJ ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..7058 /organism="Tribolium castaneum" /mol_type="genomic DNA" /strain="Georgia GA2" /db_xref="taxon:7070" /country="USA: Kansas" /collection_date="Apr-2003" WGS AAJJ02000001-AAJJ02007058 WGS_SCAFLD CM000276-CM000285 WGS_SCAFLD KQ971306-KQ973453 // LOCUS JJRW010000000 1317723 rc DNA linear INV 13-MAY-2015 DEFINITION Loxosceles reclusa isolate LREC.00, whole genome shotgun sequencing project. ACCESSION JJRW000000000 VERSION JJRW000000000.1 DBLINK BioProject: PRJNA167404 BioSample: SAMN02641903 KEYWORDS WGS. SOURCE Loxosceles reclusa (brown recluse) ORGANISM Loxosceles reclusa Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Araneae; Araneomorphae; Haplogynae; Scytodoidea; Sicariidae; Loxosceles. REFERENCE 1 (bases 1 to 1317723) AUTHORS Qu,J., Murali,S.C., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Hernandez,B., Javaid,M., Jayaseelan,J.C., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Ongeri,F., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Gnanaolivu,R.D., Richards,S., Worley,K., Muzny,D. and Gibbs,R. TITLE Loxosceles reclusa Genome sequencing JOURNAL Unpublished REFERENCE 2 (bases 1 to 1317723) AUTHORS Qu,J., Murali,S.C., Bandaranaike,D., Bellair,M., Blankenburg,K., Chao,H., Dinh,H., Doddapaneni,H., Dugan-Rocha,S., Elkadiri,S., Hernandez,B., Javaid,M., Jayaseelan,J.C., Lee,S., Li,M., Ming,W., Munidasa,M., Muniz,J., Nguyen,L., Ongeri,F., Osuji,N., Pu,L.-L., Puazo,M., Qu,C., Quiroz,J., Raj,R., Weissenberger,G., Xin,Y., Zou,X., Han,Y., Gnanaolivu,R.D., Richards,S., Worley,K., Muzny,D. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (15-APR-2014) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA COMMENT The Loxosceles reclusa whole genome shotgun (WGS) project has the project accession JJRW000000000. This version of the project (01) has the accession number JJRW010000000, and consists of sequences JJRW010000001-JJRW011317723. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths LG v. 35218; Atlas Link v. 1.0; Atlas GapFill v. 2.2 Assembly Name :: Lrec_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 86.0x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..1317723 /organism="Loxosceles reclusa" /mol_type="genomic DNA" /isolate="LREC.00" /db_xref="taxon:6921" /sex="pooled males and females" /tissue_type="whole organism" /country="USA: 13647 Jefferson Hwy, Bumpass, VA" /lat_lon="37.8773 N 77.8203 W" /collection_date="02-Apr-2011/20-May-2012" WGS JJRW010000001-JJRW011317723 WGS_SCAFLD JJRW01S0000001-JJRW01S0143665 // LOCUS AELG01000000 10672 rc DNA linear INV 27-APR-2015 DEFINITION Bombus terrestris, whole genome shotgun sequencing project. ACCESSION AELG00000000 VERSION AELG00000000.1 DBLINK BioProject: PRJNA45869 BioSample: SAMN00009041 KEYWORDS WGS. SOURCE Bombus terrestris (buff-tailed bumblebee) ORGANISM Bombus terrestris Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Apidae; Bombus; Bombus. REFERENCE 1 (bases 1 to 10672) AUTHORS Sadd,B.M., Barribeau,S.M., Bloch,G., de Graaf,D.C., Dearden,P., Elsik,C.G., Gadau,J., Grimmelikhuijzen,C.J., Hasselmann,M., Lozier,J.D., Robertson,H.M., Smagghe,G., Stolle,E., Van Vaerenbergh,M., Waterhouse,R.M., Bornberg-Bauer,E., Klasberg,S., Bennett,A.K., Camara,F., Guigo,R., Hoff,K., Mariotti,M., Munoz-Torres,M., Murphy,T., Santesmasses,D., Amdam,G.V., Beckers,M., Beye,M., Biewer,M., Bitondi,M.M., Blaxter,M.L., Bourke,A.F., Brown,M.J., Buechel,S.D., Cameron,R., Cappelle,K., Carolan,J.C., Christiaens,O., Ciborowski,K.L., Clarke,D.F., Colgan,T.J., Collins,D.H., Cridge,A.G., Dalmay,T., Dreier,S., du Plessis,L., Duncan,E., Erler,S., Evans,J., Falcon,T., Flores,K., Freitas,F.C., Fuchikawa,T., Gempe,T., Hartfelder,K., Hauser,F., Helbing,S., Humann,F.C., Irvine,F., Jermiin,L.S., Johnson,C.E., Johnson,R.M., Jones,A.K., Kadowaki,T., Kidner,J.H., Koch,V., Kohler,A., Kraus,F.B., Lattorff,H.M., Leask,M., Lockett,G.A., Mallon,E.B., Antonio,D.S., Marxer,M., Meeus,I., Moritz,R.F., Nair,A., Napflin,K., Nissen,I., Niu,J., Nunes,F.M., Oakeshott,J.G., Osborne,A., Otte,M., Pinheiro,D.G., Rossie,N., Rueppell,O., Santos,C.G., Schmid-Hempel,R., Schmitt,B.D., Schulte,C., Simoes,Z.L., Soares,M.P., Swevers,L., Winnebeck,E.C., Wolschin,F., Yu,N., Zdobnov,E.M., Aqrawi,P.K., Blankenburg,K.P., Coyle,M., Francisco,L., Hernandez,A.G., Holder,M., Hudson,M.E., Jackson,L., Jayaseelan,J., Joshi,V., Kovar,C., Lee,S.L., Mata,R., Mathew,T., Newsham,I.F., Ngo,R., Okwuonu,G., Pham,C., Pu,L.L., Saada,N., Santibanez,J., Simmons,D., Thornton,R., Venkat,A., Walden,K.K., Wu,Y.Q., Debyser,G., Devreese,B., Asher,C., Blommaert,J., Chipman,A.D., Chittka,L., Fouks,B., Liu,J., O'Neill,M.P., Sumner,S., Puiu,D., Qu,J., Salzberg,S.L., Scherer,S.E., Muzny,D.M., Richards,S., Robinson,G.E., Gibbs,R.A., Schmid-Hempel,P. and Worley,K.C. TITLE The genomes of two key bumblebee species with primitive eusocial organization JOURNAL Genome Biol. 16 (1), 76 (2015) PUBMED 25908251 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 10672) AUTHORS Qu,J., Richards,S., Aqrawi,P., Blankenburg,K., Chen,D., Goodspeed,R., Gross,S., Holder,M., Jackson,L., Javaid,M., Joshi,V., Kovar,C., Lee,S., Mandapat,C., Mata,R., Mathew,T., Ngo,R., Nguyen,L., Nguyen,N., Okwuonu,G., Ongeri,F., Pham,C., Reid,J.G., Rio Deiros,D., Santibanez,J., Wang,M., Wu,Y.-Q., Scherer,S., Newsham,I., Worley,K.C., Muzny,D.M. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (18-NOV-2010) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA COMMENT The Bombus terrestris whole genome shotgun (WGS) project has the project accession AELG00000000. This version of the project (01) has the accession number AELG01000000, and consists of sequences AELG01000001-AELG01010672. Contact ncbi-contacts@bcm.tmc.edu for more information. The DNA source was a single haploid drone for the XLR fragment library and pools of haploid drones for the 20kb and 8kb libraries. Drones were provided by Paul Schmid-Hempel. Bter_1.0 was created with 454 Newbler assembler v. 2.3-PreRelease-10/19/2009 for the shotgun sequences, followed by local re-assembly with additional unassembled mate-pairs using Phrap to close additional gaps. ##Genome-Assembly-Data-START## Assembly Method :: Newbler v. 2.3-PreRelease-10/19/2009 and Phrap Assembly Name :: Bter_1.0 Genome Coverage :: 21.4x Sequencing Technology :: 454 ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..10672 /organism="Bombus terrestris" /mol_type="genomic DNA" /db_xref="taxon:30195" /sex="male" /note="haploid drones" WGS AELG01000001-AELG01010672 WGS_SCAFLD CM001169-CM001186 WGS_SCAFLD GL898769-GL904446 // LOCUS AADG06000000 16501 rc DNA linear INV 04-AUG-2014 DEFINITION Apis mellifera strain DH4, whole genome shotgun sequencing project. ACCESSION AADG00000000 VERSION AADG00000000.6 DBLINK BioProject: PRJNA10625 BioSample: SAMN00002455 KEYWORDS WGS. SOURCE Apis mellifera (honey bee) ORGANISM Apis mellifera Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Apidae; Apis. REFERENCE 1 (bases 1 to 16501) CONSRTM Human Genome Sequencing Center TITLE Direct Submission JOURNAL Submitted (18-DEC-2003) Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA REFERENCE 2 (bases 1 to 16501) AUTHORS Zhang,L., Deng,J., Wu,Y.-Q., Kovar,C., Aqrawi,P., Bandaranaike,D., Blankenburg,K., Chen,D., Denson,S., Dinh,H., Firestine,M., Gross,S., Han,Y., Hernandez,B., Holder,M., Jackson,L., Javaid,M., Jing,C., Jones,J., Joshi,V., Kamau,G., Korchina,V., Lee,S., Lorensuhewa,L., Mata,R., Mathew,T., Mims,S., Ngo,R., Nguyen,L., Okwuonu,G., Ongeri,F., Osuji,N., Pham,C., Puazo,M., Qu,C., Quiroz,J., Raj,R., Rio Deiros,D., Santibanez,J., Scheel,M., Scherer,S., Vee,V., Wang,M., Xin,Y., Richards,S., Reid,J.G., Newsham,I., Worley,K.C., Muzny,D.M. and Gibbs,R. TITLE Direct Submission JOURNAL Submitted (04-NOV-2010) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA COMMENT On Nov 30, 2010 this sequence version replaced AADG00000000.5. The Apis mellifera whole genome shotgun (WGS) project has the project accession AADG00000000. This version of the project (06) has the accession number AADG06000000, and consists of sequences AADG06000001-AADG06016501. Contact ncbi-contacts@bcm.tmc.edu for more information. Amel_4.5 is an improved assembly created by using ABI SOLiD sequence and Roche 454 paired-end sequence to superscaffold and fill gaps in the Amel_4.0 assembly using the Atlas-link software. The contig-level assemblies were prepared using the Atlas assembly system. ##Genome-Assembly-Data-START## Assembly Method :: Atlas assembly system v. before 2011 Assembly Name :: Amel_4.5 Genome Coverage :: 8x Sequencing Technology :: Sanger; SOLiD; 454 ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..16501 /organism="Apis mellifera" /mol_type="genomic DNA" /strain="DH4" /db_xref="taxon:7460" WGS AADG06000001-AADG06016501 WGS_SCAFLD CM000054-CM000069 WGS_SCAFLD GL630009-GL635652 LOCUS HG994961 998389 bp DNA linear INV 05-MAR-2021 DEFINITION Eimeria tenella genome assembly, chromosome: 1. ACCESSION HG994961 VERSION HG994961.1 DBLINK BioProject: PRJEB43184 BioSample: SAMEA7524401 KEYWORDS . SOURCE Eimeria tenella ORGANISM Eimeria tenella Eukaryota; Sar; Alveolata; Apicomplexa; Conoidasida; Coccidia; Eucoccidiorida; Eimeriorina; Eimeriidae; Eimeria. REFERENCE 1 CONSRTM Wellcome Sanger Tree of Life Programme TITLE Direct Submission JOURNAL Submitted (18-FEB-2021) WELLCOME SANGER INSTITUTE, Tree of Life, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom COMMENT The assembly pEimTen1.1 is based on 41x PacBio data, 10X Genomics Chromium data, and Arima Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). PacBio subreads were assembled with Canu, contigs were deduplicated using Gap5, and the assembly was scaffolded with scaff10x using E. tenella 10x Chromium Illumina reads. This was then broken with break10x and re-scaffolded using SALSA2 and E. tenella Hi-C reads. Juicebox and Tigmint were used to break scaffolds. RaGOO was then used to re-scaffold, using another assembly generated from the same PacBio reads using wtdbg2. The assembly was then polished with Arrow and Pilon, using 10x Chromium Illumina reads. It then underwent manual curation before final polishing with Pilon. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in reverse order of size. Annnotation was initially generated using Companion, with Eimeria tenella strain Houghton as the reference, and the annotations were then manually curated by Uli Bohme. FEATURES Location/Qualifiers source 1..998389 /organism="Eimeria tenella" /mol_type="genomic DNA" /db_xref="taxon:5802" /chromosome="1"