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Distractions and amusements, with a sandwich and coffee.

Here we are now at the middle of the fourth large part of this talk.
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They serve as the form for The Outbreak Poems.

On March 14th celebrate `\pi` Day. Hug `\pi`—find a way to do it.

For those who favour `\tau=2\pi` will have to postpone celebrations until July 26th. That's what you get for thinking that `\pi` is wrong. I sympathize with this position and have `\tau` day art too!

If you're not into details, you may opt to party on July 22nd, which is `\pi` approximation day (`\pi` ≈ 22/7). It's 20% more accurate that the official `\pi` day!

Finally, if you believe that `\pi = 3`, you should read why `\pi` is not equal to 3.

This year's `\pi` day art collection celebrates not only the digit but also one of the fundamental forces in nature: gravity.

In February of 2016, for the first time, gravitational waves were detected at the Laser Interferometer Gravitational-Wave Observatory (LIGO).

The signal in the detector was sonified—a process by which any data can be encoded into sound to provide hints at patterns and structure that we might otherwise miss—and we finally heard what two black holes sound like. A buzz and chirp.

The art is featured in the Gravity of Pi article on the Scientific American SA Visual blog.

All the art was processed while listening to Roses by Coeur de Pirate, a brilliant female French-Canadian songwriter, who sounds like a mix of Patricia Kaas and Lhasa. The lyrics Oublie-moi (Forget me) are fitting with this year's theme of gravity.

Mais laisse-moi tomber, laisse-nous tomber

Laisse la nuit trembler en moi

Laisse-moi tomber, laisse nous tomber

Cette fois

But let me fall, let us fall

Let the night tremble in me

Let me fall, let us fall

This time

The number `\pi` appears in the fundamental equation of general relativity, which relates gravity (left side) to energy and momentum (right side).

`R_{\mu \nu} - \tfrac{1}{2} Rg_{\mu\nu} = 8 \pi G T_{\mu \nu}`

The reason why `\pi` appears has to do with the need to include the surface area of the sphere, `4 \pi r^2` in the mathematics. This is very nicely described in Sean Carrol's article Einstein and `\pi`.

Let's make the digits of `\pi` into masses, throw them into space, and watch gravity make them collide and orbit each other. Read about the details of the simulation and look at the posters.

As the number of digits is increased, more elaborate patterns arise. Here is one simulation using 100 digits.

How about 1000 digits? In this simulation the masses are similar and they all collide within the circle.

*Genetic sequences of the coronavirus tell story of when the virus arrived in each country and where it came from.*

Our graphic in Scientific American's Graphic Science section in the June 2020 issue shows a phylogenetic tree based on a snapshot of the data model from Nextstrain as of 31 March 2020.

Our design on the cover of Nature Cancer's April 2020 issue shows mutation spectra of patients from the POG570 cohort of 570 individuals with advanced metastatic cancer.

The cover design accompanies our report in the issue Pleasance, E., Titmuss, E., Williamson, L. et al. (2020) Pan-cancer analysis of advanced patient tumors reveals interactions between therapy and genomic landscapes. *Nat Cancer* **1**:452–468.

*Every day sadder and sadder news of its increase. In the City died this week 7496; and of them, 6102 of the plague. But it is feared that the true number of the dead this week is near 10,000 ....*

—Samuel Pepys, 1665

This month, we begin a series of columns on epidemiological models. We start with the basic SIR model, which models the spread of an infection between three groups in a population: susceptible, infected and recovered.

We discuss conditions under which an outbreak occurs, estimates of spread characteristics and the effects that mitigation can play on disease trajectories. We show the trends that arise when "flattenting the curve" by decreasing `R_0`.

This column has an interactive supplemental component that allows you to explore how the model curves change with parameters such as infectious period, basic reproduction number and vaccination level.

Bjørnstad, O.N., Shea, K., Krzywinski, M. & Altman, N. (2020) Points of significance: Modeling infectious epidemics. *Nature Methods* **17**:455–456.

I'm writing poetry daily to put my feelings into words more often during the COVID-19 outbreak.

That moment when you know a moment.

Branch to branch, flit, look everywhere, chirp.

Memory, scent of thought fleeting.

Distant pasts all ways in plural form.

A poster full of epidemiological worry and statistics. Now updated with the genome of SARS-CoV-2 and COVID-19 case statistics as of 3 March 2020.

Bacterial and viral genomes of various diseases are drawn as paths with color encoding local GC content and curvature encoding local repeat content. Position of the genome encodes prevalence and mortality rate.

The deadly genomes collection has been updated with a posters of the genomes of SARS-CoV-2, the novel coronavirus that causes COVID-19.

A workshop in using the Circos Galaxy wrapper by Hiltemann and Rasche. Event organized by Australian Biocommons.

Galaxy wrapper training materials, Saskia Hiltemann, Helena Rasche, 2020 Visualisation with Circos (Galaxy Training Materials).