# 768 digits of PI
#
# prime digits are hydrophobic (h)
#
# number
# 3 1415926535 8979323846 2643383279 5028841971 6939937510 5820974944
#   5923078164 0628620899 8628034825 3421170679 8214808651 3282306647
#   0938446095 5058223172 5359408128 4811174502 8410270193 8521105559
#   6446229489 5493038196 4428810975 6659334461 2847564823 3786783165
#   2712019091 4564856692 3460348610 4543266482 1339360726 0249141273
#   7245870066 0631558817 4881520920 9628292540 9171536436 7892590360
#   0113305305 4882046652 1384146951 9415116094 3305727036 5759591953
#   0921861173 8193261179 3105118548 0744623799 6274956735 1885752724
#   8912279381 8301194912 9833673362 4406566430 8602139494 6395224737
#   1907021798 6094370277 0539217176 2931767523 8467481846 7669405132
#   0005681271 4526356082 7785771342 7577896091 7363717872 1468440901
#   2249534301 4654958537 1050792279 6892589235 4201995611 2129021960
#   8640344181 5981362977 4771309960 5187072113 4999999
#
# sequence
# h ppphphphhh pphphhhppp hpphhphhhp hphppppphp pphpphhhpp hphpphpppp
#   hphhphpppp pphpphpppp pphpphpphh hphpphpphp phpppppphp hhphhpppph
#   pphpppppph hphphhhphh hhhppppphp ppppphphph pppphhppph phhppphhhp
#   pppphhpppp hpphphpppp pphppppphh pphphhpppp hpphhppphh hhpphphpph
#   hhphpppppp phppphppph hppphppppp phphhpppph phhphpphhp phppppphhh
#   hhphphpppp pphphhppph pppphhpphp pphphphhpp pphphhpphp hpphhpphpp
#   ppphhphhph ppphpppphh phpppppphp ppphpppppp hhphhhhphp hhhphppphh
#   pphppppphh ppphhppphp hpphppphpp phppphhhpp phhpphphhh ppphhhhhhp
#   ppphhhphpp phppppppph pphhphhhph pppphppphp ppphphpppp phphhhphhh
#   ppphphphpp pppphhphhh phhphphphp hphphphhhh ppphpppppp hppppphphh
#   ppphppphhp phhphhppph hhphhhphph hhhhpppppp hhphhphphh pppppppppp
#   hhpphhphpp pphpphphhh pphphphhhp ppphhpphhh phpppphppp hphpphpppp
#   pppphppppp hppphphphh phhphppppp hpphphhpph ppppppp
#
# Download Linux binary from
#
# http://www.cs.ubc.ca/labs/beta/Projects/REMC-HPPFP/

# change DIR to where the rem2dm binary is
DIR=/home/martink/work/protein.folding/bin

# change this if you have less/more than 2 hours
MAXTIME=7200

$DIR/rem2dm -maxT=220 -numLocalSteps=500 -eng=350 -maxRunTime=$MAXTIME -traceFile=pi.768 -minT=160 -expID=pi.768 -numReps=10 -seq=hppphphphhhpphphhhppphpphhphhhphphppppphppphpphhhpphphpphpppphphhphpppppphpphpppppphpphpphhhphpphpphpphpppppphphhphhpppphpphpppppphhphphhhphhhhhppppphpppppphphphpppphhppphphhppphhhppppphhpppphpphphpppppphppppphhpphphhpppphpphhppphhhhpphphpphhhphppppppphppphppphhppphpppppphphhpppphphhphpphhpphppppphhhhhphphpppppphphhppphpppphhpphppphphphhpppphphhpphphpphhpphppppphhphhphppphpppphhphpppppphpppphpppppphhphhhhphphhhphppphhpphppppphhppphhppphphpphppphppphppphhhppphhpphphhhppphhhhhhpppphhhphppphppppppphpphhphhhphpppphppphpppphphppppphphhhphhhppphphphpppppphhphhhphhphphphphphphphhhhppphpppppphppppphphhppphppphhpphhphhppphhhphhhphphhhhhpppppphhphhphphhpppppppppphhpphhphpppphpphphhhpphphphhhpppphhpphhhphpppphppphphpphpppppppphppppphppphphphhphhphppppphpphphhpphppppppp