# 64 digits of PI
#
# prime digits are hydrophobic (h)
#
# number 3141592653589793238462643383279502884197169399375105820974944592
#    seq hppphphphhhpphphhhppphpphhphhhphphppppphppphpphhhpphphpphpppphph
#
# Download Linux binary from
#
# http://www.cs.ubc.ca/labs/beta/Projects/REMC-HPPFP/

# change DIR to where the rem2dm binary is
DIR=/home/martink/work/protein.folding/bin

# 60 seconds should be enough
MAXTIME=60

$DIR/rem2dm -maxT=220 -numLocalSteps=500 -eng=350 -maxRunTime=$MAXTIME -traceFile=pi.64 -minT=160 -expID=pi.64 -numReps=10 -seq=hppphphphhhpphphhhppphpphhphhhphphppppphppphpphhhpphphpphpppphph