The never-repeating digits of `\pi` can be approximated by
22/7 = 3. to within 0.04%. These pages artistically and mathematically explore rational approximations to `\pi`. This 22/7 ratio is celebrated each year on July 22nd. If you like hand waving or back-of-envelope mathematics, this day is for you: `\pi` approximation day!
What would circles look like if `\pi`=22/7?
Imagine that the circle had a tiny loop at one of its points. The circumference of this loop would be added to the circumference of the circle, but the loop would be so small that we would never notice it.
This is reminiscent of how string theories describe higher dimensions—as tiny loops at each point in space, except in my example the loop is only at one point.
This idea originated with Klein, who explained the fourth dimension as a curled up circle of a very small radius. Another way in which this curling-up is used is to say that the fifth dimension is a curled up Planck length, as explained in this Imagining 10 Dimensions video.
If this idea is difficult to wrap your head around, you're not alone. We cannot think of additional dimensions in the regular spatial sence since we have no means of experiencing such phenomena. We can however imagine how flatlanders might explain the 3rd dimension, since we can perceive it. They would draw the curled up circles in their plane because they would not have the experience of drawing with perspective mimicking our 3rd dimension.
We would draw their explanation as shown on the right in the figure above, borrowing from our concept of the 3rd spatial dimension. Now imagine showing our explanation to a flatlander. They would not see the same thing as you—the circles would not intuitively imply the higher dimension to them.
This is analogous to why we cannot draw folded up dimensions. We are merely solidlanders—flatlanders in 3d space. Creatures that can perceive more spatial dimensions would use us as examples of diminished perceptual ability.
Another way to imagine how a circle might look is a little more realistic. The theory of special relativity tells us that when we travel at speed relative to another object the dimensions of that object appear contracted to us in the direction of motion.
This contraction is always present, but essentially imperceptible unless we're travelling fast enough. For example, in order for a 1 meter object to appear contracted by the length of a hydrogen molecule (0.3 nm) we would have to be travelling at 7.3 km/s (Wolfram Alpha calculation)!
How fast would we have to be going to compress the circle sufficiently so that its circumference and radius ratio embody the `22/7` approximation of `\pi`? Pretty fast, it turns out. If we travel at just over 12,000 km/sec (0.04 times the speed of light, Wolfram Alpha calculation), the circle will compress as shown in the figure above, and the ratio of its circumference to the radius along direction of motion will make `\pi` appear to be `22/7`.
This compression in length would be barely perceptible to us. Below are both circles, shown overlapping, with `delta` being the extra length in radius required.
The value of `\delta`, which is 0.0008049179155 (if `r = 1`), can be calculated by considering the perimeter of an ellipse. The fact that `\delta` is small shouldn't be surprising since `22/7` is an excellent approximation of `\pi`, good to 0.04%.
Calculating the parameter of an ellipse is more complicated than calculating it for a circle because it uses something called an elliptic integral. This integral has no analytical solution and requires numerical approximation. Luckily, we have computers.
We can use the expression shown above for the perimeter of the ellipse to determine how much the circle needs to be deformed. Let's write `a = r + \delta` (original radius with slight deformation `\delta`) and `b=r`. Since `22/7 > \pi` we know that `\delta > 0`.
It remains to solve the equation below for a value of `\delta` that will yield a ratio of circumference to `r` of `2 \times 22/7`.
To make things simpler, let set `r=1`. Solving the equation numerically, I find $$\delta = 0.0008049179155$$
After all this, we come full-circle to the meaning of full-circle.
You might ask why I didn't change the definition of `\pi` to `22/7` in the upper limit of the integral. After all, why not make the approximation exercise more faithful to the approximation?
It turns out that if I did that I would get `\delta=0`, which brings us back to the original circle. How is this possible?
Technically, this is because the integral returns the upper limit as its answer if the eccentricity is zero (i.e., `E(x,0)=x`).
Intuitively, this is because changing the upper limit of the integral actually redefines the angle of a full revolution. Now, full-circle isn't `2 \pi` radians, but `2 \times 22/7`. Given that the ratio of the circumference of a circle to its radius is exactly the size, in radians, of a full revolution, we don't need to change the shape of the circle if we're willing to change what a full revolution means.
One of my color tools, the
colorsnap application snaps colors in an image to a set of reference colors and reports their proportion.
Below is Times Square rendered using the colors of the MTA subway lines.
Drugs could be more effective if taken when the genetic proteins they target are most active.
Design tip: rediscover CMYK primaries.
Ruben et al. A database of tissue-specific rhythmically expressed human genes has potential applications in circadian medicine Science Translational Medicine 10 Issue 458, eaat8806.
We focus on the important distinction between confidence intervals, typically used to express uncertainty of a sampling statistic such as the mean and, prediction and tolerance intervals, used to make statements about the next value to be drawn from the population.
Confidence intervals provide coverage of a single point—the population mean—with the assurance that the probability of non-coverage is some acceptable value (e.g. 0.05). On the other hand, prediction and tolerance intervals both give information about typical values from the population and the percentage of the population expected to be in the interval. For example, a tolerance interval can be configured to tell us what fraction of sampled values (e.g. 95%) will fall into an interval some fraction of the time (e.g. 95%).
Altman, N. & Krzywinski, M. (2018) Points of significance: Predicting with confidence and tolerance Nature Methods 15:843–844.
Krzywinski, M. & Altman, N. (2013) Points of significance: Importance of being uncertain. Nature Methods 10:809–810.
A 4-day introductory course on genome data parsing and visualization using Circos. Prepared for the Bioinformatics and Genome Analysis course in Institut Pasteur Tunis, Tunis, Tunisia.
Data visualization should be informative and, where possible, tasty.
Stefan Reuscher from Bioscience and Biotechnology Center at Nagoya University celebrates a publication with a Circos cake.
The cake shows an overview of a de-novo assembled genome of a wild rice species Oryza longistaminata.
The presence of constraints in experiments, such as sample size restrictions, awkward blocking or disallowed treatment combinations may make using classical designs very difficult or impossible.
Optimal design is a powerful, general purpose alternative for high quality, statistically grounded designs under nonstandard conditions.
We discuss two types of optimal designs (D-optimal and I-optimal) and show how it can be applied to a scenario with sample size and blocking constraints.
Smucker, B., Krzywinski, M. & Altman, N. (2018) Points of significance: Optimal experimental design Nature Methods 15:599–600.
Krzywinski, M., Altman, N. (2014) Points of significance: Two factor designs. Nature Methods 11:1187–1188.
Krzywinski, M. & Altman, N. (2014) Points of significance: Analysis of variance (ANOVA) and blocking. Nature Methods 11:699–700.
Krzywinski, M. & Altman, N. (2014) Points of significance: Designing comparative experiments. Nature Methods 11:597–598.