Martin Krzywinski / Genome Sciences Center / mkweb.bcgsc.ca Martin Krzywinski / Genome Sciences Center / mkweb.bcgsc.ca - contact me Martin Krzywinski / Genome Sciences Center / mkweb.bcgsc.ca on Twitter Martin Krzywinski / Genome Sciences Center / mkweb.bcgsc.ca - Lumondo Photography Martin Krzywinski / Genome Sciences Center / mkweb.bcgsc.ca - Pi Art Martin Krzywinski / Genome Sciences Center / mkweb.bcgsc.ca - Hilbertonians - Creatures on the Hilbert Curve
Lips that taste of tears, they say, are the best for kissing.Dorothy Parkerget cranky

science: exciting


Bioinformatics and Genome Analysis Course. Izmir International Biomedicine and Genome Institute, Izmir, Turkey. May 2–14, 2016


design + visualization

EMBO Journal 2011 Cover Contest

non-scientific image entry - fiber optics - honourable mention

For the EMBO Journal 2011 Cover Contest, I prepared two entries, one for the scientific category and one for the non-scientific category.

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
The non-scientific entry is abstract photo of fiber optics. The scientific entry was an information graphic showing a hive panel of genomic annotations in human, mouse and dog genomes. The hive panel is based on the use of the newly introduced hive plot.

About the EMBO Journal Cover Contest

The EMBO Journal non-scientific cover prize is awarded for the most interesting and beautiful image made outside the lab. Contestants may submit, for example, photos or artistic impressions of wildlife animals, plants or landscapes. Particularly welcome will also be hand or computer-generated paintings or drawings (or photographs of other works of art) related to a biological or molecular biological topic.

The EMBO Journal scientific cover prize is awarded for the most captivating and thought-provoking contribution depicting a piece of molecular biology research. Entries can include light or electron micrographs, 3D reconstructions or models of biological specimen or molecules, spectacular artefacts collected in the lab, original new views of lab equipment (but not of colleagues!), or other research-based images to be of interest to molecular biologists.

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
Examples of scientific cover image winners from previous years. My Circos image (top left) won the 2010 scientfic image cover category. (see more)

2011 Contest and Image Status

The 2011 winners have been announced. The scientific image winner was Heiti Paves, who submitted a confocal image of an Arabidopsis thaliana anther filled with pollen grains. The non-scientific winner was Dieter Lampl, with his "Blue Ice" photo — a glacier in Los Glaciares National Park in Patagonia.

My non-scientific entry (photo of fiber optics) received honourable mention and was included in the Favourites of the Jury gallery.


non-scientific image entry - fiber Optics

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
Four genomes — The illustration, originally part of a poster, shows syntenic relationships between human, chimpanzee, mouse and zebrafish genomes. Curved links encode sequence similarity and outer data tracks represent consensus similarity statistics and orthologous genes. The cover image shows a detail of a visualization prepared with the free genome comparison tool, Circos. (EMBO Journal - Best Scientific Cover - 2010)
Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
My 2011 non-scientific fiber optic entry appears in a gallery of a small selection of images that were shortlisted by the jury of The EMBO Journal Cover Contest 2011. Images were selected with the aim of highlighting the diversity and quality of submissions in both, the scientific and non-scientific categories of the contest. (view gallery)

My non-scientific entry was an abstract image photo of fiber optics. It received honourable mention and were included in the Favourites of the Jury gallery.

The motivation and technical details behind these photos are described here.

The other entry, a scientific image, was an information graphic showing a hive panel of genomic annotations in human, mouse and dog genomes, based on the use of the newly introduced hive plot.

My submission of a large Circos figure for its cover (see right), which was originally designed for a poster that introduced Circos, was awarded the 2010 EMBO Journal best scientific cover prize.

entry details

Some time ago, I did a personal project of photos of fiber optic strands. These worked out well. I had not done anything with these images, and thought they would make a competitive entry into the cover contest.

Fiber optic lamp photos / Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
My first attempt at photographing fiber optic lamp strands. These images were bundled into a set called Diving Horror, because of their likeness to creepy tentacles of creatures of the deep. (more images on flickr.)

I revisited the fiber optic lamp with a higher resolution camera (Canon 5D — original images were from a Canon 20D) and a dedicated macro lens (Sigma 150mm f2.8 EX APO DG HSM Macro) (original images were shot with the Canon EF 24-70L).

From these new images, shown below, I created five EMBO Journal cover submissions.

Fiber optic lamp photos / Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
Second attempt at photographing fiber optic lamp strands. (more images on flickr.)

The submissions would render on the cover as shown below.

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
Photos of fiber optic lamp strands. (More images on flickr.)

2011 EMBO Journal cover contest — fiber optic lamp submission images

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
2011 EMBO Cover contest submission — macro photograph of fiber optic lamp strands. (More images on flickr.)

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
2011 EMBO Cover contest submission — macro photograph of fiber optic lamp strands. (More images on flickr.)

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
2011 EMBO Cover contest submission — macro photograph of fiber optic lamp strands. (More images on flickr.)

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
2011 EMBO Cover contest submission — macro photograph of fiber optic lamp strands. (More images on flickr.)

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
2011 EMBO Cover contest submission — macro photograph of fiber optic lamp strands. (More images on flickr.)

news + thoughts

Unentangling complex plots

Fri 10-07-2015

The Points of Significance column is on vacation this month.

Meanwhile, we're showing you how to manage small multiple plots in the Points of View column Unentangling Complex Plots.

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
Nature Methods Points of View column: Unentangling complex plots. (download, more about Points of View)

Data in small multiples can vary in range, noise level and trend. Gregor McInerny and myself show you how you can deal with this by cropped and scaling the multiples to a different range to emphasize relative changes while preserving the context of the full data range to show absolute changes.

McInerny, G. & Krzywinski, M. (2015) Points of View: Unentangling complex plots. Nature Methods 12:591.

...more about the Points of View column

Fixing Jurassic World science visualizations

Fri 10-07-2015

The Jurassic World Creation Lab webpage shows you how one might create a dinosaur from a sample of DNA. First extract, sequence, assemble and fill in the gaps in the DNA and then incubate in an egg and wait.

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
We can't get dinosaur genomics right, but we can get it less wrong. (a) Corn genome used in Jurassic World Creation Lab website. Image is from the Science publication B73 Maize Genome: Complexity, Diversity, and Dynamics. Photo and composite by Universal Studios and Amblin Entertainment. (b) Random data on 8 chromosomes from chicken genome resized to triceratops genome size (3.2 Gb). Image by Martin Krzywinski. (c) Actual genome data for lizard genome, UCSC anoCar2.0, May 2010. Image by Martin Krzywinski. Triceratops outline in (b,c) from wikipedia.

With enough time, you'll grow your own brand new dinosaur. Or a stalk of corn ... with more teeth.

What went wrong? Let me explain.

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
Corn World: Teeth on the Cob.


me as a keyword list

aikido | analogies | animals | astronomy | comfortable silence | cosmology | dorothy parker | drumming | espresso | fundamental forces | good kerning | graphic design | humanism | humour | jean michel jarre | kayaking | latin | little fluffy clouds | lord of the rings | mathematics | negative space | nuance | perceptual color palettes | philosophy of science | photography | physical constants | physics | poetry | pon farr | reason | rhythm | richard feynman | science | secularism | swing | symmetry and its breaking | technology | things that make me go hmmm | typography | unix | victoria arduino | wine | words