In your hiding, you're alone. Kept your treasures with my bones.crawl somewhere bettermore quotes

# e: worthwhile

The Outbreak Poems — artistic emissions in a pandemic

# visualization + design

Typography geek? If you like the geometry and mathematics of these posters, you may enjoy something more letter ed. Visions of type: Type Peep Show: The Private Curves of Letters posters.

# The art of Pi ($pi$), Phi ($phi$) and $e$

This section contains various art work based on $\pi$, $\phi$ and $e$ that I created over the years. $pi$ day and $pi$ approximation day artwork is kept separate.

The accidental similarity number (ASN) is a kind of overlap between numbers. I came up with this concept after creating typographical art about the $i$-ness of $\pi$.

The poster shows the accidental similarity number for $\pi$, $\phi$ and $e$ created from the first 1,000,000 digits of each number.

The accidental similarity number for $\pi$, $\phi$ and $e$ created from the first 1,000,000 digits of each number. (PNG, BUY ARTWORK)
Segments of $\pi$, $\phi$ and $e$ are connected by thin links if the same digit is shared between two numbers, and thick links if among all three. Shown for the first 10,000 digits. (PNG)

I came up with Accidental Similarity Number immediately after creating this poster of the overlap between $\pi$, $\phi$ and $e$.

The overlap between the three interesting numbers $\pi$, $\phi$ and $e$ shown in a Nixie theme. (PNG, BUY ARTWORK)

# Virus Mutations Reveal How COVID-19 Really Spread

Mon 04-05-2020

Genetic sequences of the coronavirus tell story of when the virus arrived in each country and where it came from.

Our graphic in Scientific American's Graphic Science section in the June 2020 issue shows a phylogenetic tree based on a snapshot of the data model from Nextstrain as of 31 March 2020.

Virus Mutations Reveal How COVID-19 Really Spread. Text by Mark Fischetti (Senior Editor), art direction by Jen Christiansen (Senior Graphics Editor), source: Nextstrain (enabled by data from GISAID).

# Cover of Nature Cancer April 2020

Mon 27-04-2020

Our design on the cover of Nature Cancer's April 2020 issue shows mutation spectra of patients from the POG570 cohort of 570 individuals with advanced metastatic cancer.

Each ellipse system represents the mutation spectrum of an individual patient. Individual ellipses in the system correspond to the number of base changes in a given class and are layered by mutation count. Ellipse angle is controlled by the proportion of mutations in a class within the sample and its size is determined by a sigmoid mapping of mutation count scaled within the layer. The opacity of each system represents the duration since the diagnosis of advanced disease. (read more)

The cover design accompanies our report in the issue Pleasance, E., Titmuss, E., Williamson, L. et al. (2020) Pan-cancer analysis of advanced patient tumors reveals interactions between therapy and genomic landscapes. Nat Cancer 1:452–468.

# Modeling infectious epidemics

Wed 06-05-2020

Every day sadder and sadder news of its increase. In the City died this week 7496; and of them, 6102 of the plague. But it is feared that the true number of the dead this week is near 10,000 ....
—Samuel Pepys, 1665

This month, we begin a series of columns on epidemiological models. We start with the basic SIR model, which models the spread of an infection between three groups in a population: susceptible, infected and recovered.

Nature Methods Points of Significance column: Modeling infectious epidemics. (read)

We discuss conditions under which an outbreak occurs, estimates of spread characteristics and the effects that mitigation can play on disease trajectories. We show the trends that arise when "flattenting the curve" by decreasing $R_0$.

Nature Methods Points of Significance column: Modeling infectious epidemics. (read)

This column has an interactive supplemental component that allows you to explore how the model curves change with parameters such as infectious period, basic reproduction number and vaccination level.

Nature Methods Points of Significance column: Modeling infectious epidemics. (Interactive supplemental materials)

Bjørnstad, O.N., Shea, K., Krzywinski, M. & Altman, N. (2020) Points of significance: Modeling infectious epidemics. Nature Methods 17:455–456.

# The Outbreak Poems

Sat 04-04-2020

I'm writing poetry daily to put my feelings into words more often during the COVID-19 outbreak.

$That moment when you know a moment.$
$Branch to branch, flit, look everywhere, chirp.$
$Memory, scent of thought fleeting.$
$Distant pasts all ways in plural form.$