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Safe, fallen down this way, I want to be just what I am.Cocteau Twinssafe at lastmore quotes

numbers: beautiful


Visualizaiton workshop at UBC B.I.G. Research Day. 11 May 2016


visualization + design

Typography geek? If you like the geometry and mathematics of these posters, you may enjoy something more letter ed. Visions of type: Type Peep Show: The Private Curves of Letters posters.

The art of Pi (`pi`), Phi (`phi`) and `e`

This section contains various art work based on `\pi`, `\phi` and `e` that I created over the years. `pi` day and `pi` approximation day artwork is kept separate.

The accidental similarity number (ASN) is a kind of overlap between numbers. I came up with this concept after creating typographical art about the `i`-ness of `\pi`.

The poster shows the accidental similarity number for `\pi`, `\phi` and `e`.

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca buy artwork
The accidental similarity number for `\pi`, `\phi` and `e` created from the first 1,000,000 digits of each number. (posters, BUY ARTWORK)
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news + thoughts

Analyzing Outliers: Influential or Nuisance?

Fri 08-04-2016

Some outliers influence the regression fit more than others.

This month our column addresses the effect that outliers have on linear regression.

You may be surprised, but not all outliers have the same influence on the fit (e.g. regression slope) or inference (e.g. confidence or prediction intervals). Outliers with large leverage—points that are far from the sample average—can have a very large effect. On the other hand, if the outlier is close to the sample average, it may not influence the regression slope at all.

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
Nature Methods Points of Significance column: Analyzing Outliers: Influential or Nuisance? (read)

Quantities such as Cook's distance and the so-called hat matrix, which defines leverage, are useful in assessing the effect of outliers.

Background reading

Altman, N. & Krzywinski, M. (2015) Points of Significance: Multiple Linear Regression Nature Methods 12:1103-1104.

Altman, N. & Krzywinski, M. (2015) Points of significance: Simple Linear Regression Nature Methods 12:999-1000.

...more about the Points of Significance column

Typographical posters of bird songs

Mon 28-03-2016

Chirp, chirp, chirp but much better looking.

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
The song of the Northern Flicker, Black-capped Chickadee, Olive-sided Flycatcher and Red-eyed Vireo. Sweet to the eye and ear. (details)

If you like these, check out my other typographical art posters.

Happy 2016 Pi Day—gravity of `\pi`

Mon 14-03-2016

Celebrate `\\pi` Day (March 14th) with colliding digits in space. This year, I celebrate the detection of gravitational waves at the LIGO lab and simulate the effect of gravity on masses created from the digits of `\\pi`.

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
1,000 digits of `\pi` under the influence of gravity. (details)

Some strange things can happen.

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
44 digits of `\pi` under the influence of gravity. (details)

The art is featured in the Gravity of Pi article on the Scientific American SA Visual blog.

Check out art from previous years: 2013 `\\pi` Day and 2014 `\\pi` Day and 2015 `\\pi` Day.

Neural Circuit Diagrams

Sun 13-03-2016

Use alignment and consistency to untangle complex circuit diagrams.

This month we apply the ideas presented in our column about drawing pathways to neural circuit diagrams. Neural circuits are networks of cells or regions, typically with a large number of variables, such as cell and neurotransmitter type.

Martin Krzywinski @MKrzywinski mkweb.bcgsc.ca
Nature Methods Points of View column: Neural circuit diagrams. (read)

We discuss how to effectively route arrows, how to avoid pitfalls of redundant encoding and suggest ways to encorporate emphasis in the layout.

Hunnicutt, B.J. & Krzywinski, M. (2016) Points of View: Neural circuit diagrams. Nature Methods 13:189.

background reading

Hunnicutt, B.J. & Krzywinski, M. (2016) Points of Viev: Pathways. Nature Methods 13:5.

Wong, B. (2010) Points of Viev: Gestalt principles (part 1). Nature Methods 7:863.

Wong, B. (2010) Points of Viev: Gestalt principles (part 2). Nature Methods 7:941.

...more about the Points of View column